AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046238.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046238.01.T01 MTR_4g103680 72.845 232 11 2 1 232 1 180 3.73e-107 317
MsG0880046238.01.T01 MTR_5g042880 67.949 234 21 4 1 232 1 182 3.63e-97 292
MsG0880046238.01.T01 MTR_3g088970 54.310 232 53 4 1 232 1 179 1.79e-70 223
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046238.01.T01 AT4G24830 75.781 128 12 1 105 232 88 196 3.17e-59 193
MsG0880046238.01.T01 AT4G24830 75.781 128 12 1 105 232 88 196 5.54e-59 194

Find 67 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAGTCCTTTACGACTAAT+TGG 0.184464 8:+70875128 None:intergenic
CATGATTATGCTGTCTAAAT+TGG 0.188122 8:-70875313 MsG0880046238.01.T01:intron
ACGTAGCCCGCTACCCTTCT+TGG 0.260980 8:+70875926 None:intergenic
CAGAGAATATTCTGTTTAAT+CGG 0.269629 8:-70876680 MsG0880046238.01.T01:CDS
CGAAGTACCTTTGCAATTAC+AGG 0.273791 8:+70875013 None:intergenic
TAATTGCGTGCGTGCGGCTT+TGG 0.303374 8:+70876968 None:intergenic
AAAGCCGCACGCACGCAATT+AGG 0.326522 8:-70876966 MsG0880046238.01.T01:five_prime_UTR
CAAGTACTTCCTCTCATAAA+TGG 0.334381 8:+70875057 None:intergenic
CTTTGTATTGCAGCGATATT+CGG 0.335042 8:-70876383 MsG0880046238.01.T01:intron
CGTATAGGGTATAAAAGAAT+TGG 0.348572 8:-70875188 MsG0880046238.01.T01:intron
GACTAATTGGGAGGCTCCAC+TGG 0.351872 8:+70875141 None:intergenic
TAACCCATGTTCATTCAAAA+AGG 0.356247 8:-70876646 MsG0880046238.01.T01:intron
CCCGCTACCCTTCTTGGCTT+CGG 0.371984 8:+70875932 None:intergenic
ATATTCTGTTTAATCGGGTT+TGG 0.378824 8:-70876674 MsG0880046238.01.T01:CDS
TATAAAAGAATTGGACGGTT+TGG 0.385364 8:-70875179 MsG0880046238.01.T01:CDS
TGGTGCTGCAGAGAGAATTA+TGG 0.387537 8:-70875408 MsG0880046238.01.T01:intron
GCTACGTGGAAAATTGAATA+AGG 0.387753 8:-70875910 MsG0880046238.01.T01:CDS
CAAGTCCTTTACGACTAATT+GGG 0.405173 8:+70875129 None:intergenic
GTCGGTGCTGGTAGACTTCA+AGG 0.424838 8:-70876517 MsG0880046238.01.T01:CDS
ACTCCTTCCCTTCATGCAAC+AGG 0.446702 8:-70876869 MsG0880046238.01.T01:intron
AGAGAATATTCTGTTTAATC+GGG 0.449216 8:-70876679 MsG0880046238.01.T01:CDS
GTATTTCCTTGCTTGCGTGC+TGG 0.449287 8:-70875082 MsG0880046238.01.T01:CDS
TATGAGAGGAAGTACTTGCT+TGG 0.452415 8:-70875052 MsG0880046238.01.T01:CDS
ATGAGAGGAAGTACTTGCTT+GGG 0.457223 8:-70875051 MsG0880046238.01.T01:CDS
GTTCTTGTTCACTTCACCAA+TGG 0.484175 8:-70876933 MsG0880046238.01.T01:exon
TTGAAAAGTAACGACATACT+TGG 0.489699 8:+70875352 None:intergenic
GTGTGCTTCACTGCTGATGT+TGG 0.505167 8:-70875375 MsG0880046238.01.T01:CDS
GGCAGTATCACGCAGTCATA+CGG 0.506933 8:-70875967 MsG0880046238.01.T01:CDS
CTGTAATTGCAAAGGTACTT+CGG 0.508990 8:-70875012 MsG0880046238.01.T01:CDS
ATTAGTCGTAAAGGACTTGA+AGG 0.509453 8:-70875125 MsG0880046238.01.T01:CDS
GTTGTACTTGCTTACAGTGG+TGG 0.512883 8:-70875888 MsG0880046238.01.T01:CDS
TTCATGACATGCAGTTGTAA+AGG 0.514606 8:-70875988 MsG0880046238.01.T01:intron
TACCTTTGCAATTACAGGAC+GGG 0.515868 8:+70875018 None:intergenic
TCTGTTTAATCGGGTTTGGA+AGG 0.518126 8:-70876670 MsG0880046238.01.T01:CDS
AATGCTTTCAACTGAGCCAT+TGG 0.522346 8:+70876917 None:intergenic
CAGTCATTGTCCCATGGTTG+AGG 0.522691 8:-70875854 MsG0880046238.01.T01:intron
AGGAGAACCTGTTGCATGAA+GGG 0.528602 8:+70876862 None:intergenic
CCAAGAGCTAGTGTCGGTGC+TGG 0.529991 8:-70876529 MsG0880046238.01.T01:CDS
GCGATATTCGGTCAAAATTG+TGG 0.535470 8:-70876371 MsG0880046238.01.T01:CDS
AGCCTCCCAATTAGTCGTAA+AGG 0.540721 8:-70875134 MsG0880046238.01.T01:CDS
CCAGCACCGACACTAGCTCT+TGG 0.552890 8:+70876529 None:intergenic
GTACTTGCTTGGGACCTCAA+TGG 0.557948 8:-70875041 MsG0880046238.01.T01:CDS
AAGGAGAACCTGTTGCATGA+AGG 0.558077 8:+70876861 None:intergenic
TCCGAAGCCAAGAAGGGTAG+CGG 0.564921 8:-70875933 MsG0880046238.01.T01:CDS
CCGAAGCCAAGAAGGGTAGC+GGG 0.565040 8:-70875932 MsG0880046238.01.T01:CDS
CCGCAATATAAAAGATGTTG+AGG 0.567311 8:+70876328 None:intergenic
GTAGTAGCGCATAGATGTGA+AGG 0.570777 8:+70876893 None:intergenic
TGAAGATTCCGAAGCCAAGA+AGG 0.576232 8:-70875940 MsG0880046238.01.T01:CDS
CAACATATATACCTCAACCA+TGG 0.584663 8:+70875843 None:intergenic
GAACCTGTTGCATGAAGGGA+AGG 0.585609 8:+70876866 None:intergenic
AACATATATACCTCAACCAT+GGG 0.591621 8:+70875844 None:intergenic
GGCCCGTCCTGTAATTGCAA+AGG 0.597766 8:-70875020 MsG0880046238.01.T01:CDS
ATGGCACCAGCACGCAAGCA+AGG 0.605414 8:+70875076 None:intergenic
GAAGATTCCGAAGCCAAGAA+GGG 0.607784 8:-70875939 MsG0880046238.01.T01:CDS
AATTACAGGACGGGCCATTG+AGG 0.609012 8:+70875027 None:intergenic
ACACATCAGTCATTGTCCCA+TGG 0.619335 8:-70875860 MsG0880046238.01.T01:CDS
GTCCTTTACGACTAATTGGG+AGG 0.620171 8:+70875132 None:intergenic
ACAACCTAATTGCGTGCGTG+CGG 0.637398 8:+70876962 None:intergenic
TAGGGTATAAAAGAATTGGA+CGG 0.644179 8:-70875184 MsG0880046238.01.T01:CDS
AGTCGTAAAGGACTTGAAGG+AGG 0.661011 8:-70875122 MsG0880046238.01.T01:CDS
GAAGCCAAAGCAAAAGCCAG+TGG 0.662975 8:-70875157 MsG0880046238.01.T01:CDS
AAGAAGGGTAGCGGGCTACG+TGG 0.672202 8:-70875924 MsG0880046238.01.T01:CDS
AAGGTTGTACTTGCTTACAG+TGG 0.676821 8:-70875891 MsG0880046238.01.T01:CDS
GTACCTTTGCAATTACAGGA+CGG 0.677711 8:+70875017 None:intergenic
GTATCACGCAGTCATACGGA+TGG 0.685063 8:-70875963 MsG0880046238.01.T01:CDS
TTGAAACCAAGAGCTAGTGT+CGG 0.691852 8:-70876535 MsG0880046238.01.T01:CDS
GTGCTGGTGCCATTTATGAG+AGG 0.694541 8:-70875066 MsG0880046238.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATCTTATTTAATGATTT+TGG - Chr8:70876556-70876575 MsG0880046238.01.T01:intron 10.0%
!! AATGTAATGAAAATCAATAA+AGG + Chr8:70875234-70875253 None:intergenic 15.0%
!! ATGTAATGAAAATCAATAAA+GGG + Chr8:70875233-70875252 None:intergenic 15.0%
!! CAACATATAAAGAATAAAAT+TGG + Chr8:70875823-70875842 None:intergenic 15.0%
!! TAGAAAAATAAAAAAGAACA+AGG + Chr8:70876167-70876186 None:intergenic 15.0%
!!! ATGTTTTAACTTAAAGAATA+TGG + Chr8:70875702-70875721 None:intergenic 15.0%
!!! CAATTTTATTCTTTATATGT+TGG - Chr8:70875821-70875840 MsG0880046238.01.T01:intron 15.0%
!! AACAAAATCAATTTCGTATA+GGG - Chr8:70876782-70876801 MsG0880046238.01.T01:intron 20.0%
!! AGAACAAATTATACAACAAT+AGG + Chr8:70876530-70876549 None:intergenic 20.0%
!! ATCTAATCAATATAATCAAC+TGG + Chr8:70875932-70875951 None:intergenic 20.0%
!! GTTAATGACATTCAAAAAAT+GGG + Chr8:70875198-70875217 None:intergenic 20.0%
!! GTTATAAGATTGTAAATATC+CGG - Chr8:70876708-70876727 MsG0880046238.01.T01:intron 20.0%
!! TAACAAAATCAATTTCGTAT+AGG - Chr8:70876781-70876800 MsG0880046238.01.T01:intron 20.0%
!! TCTTTATTCAGAATATACAA+AGG + Chr8:70876221-70876240 None:intergenic 20.0%
!! TGTTAATGACATTCAAAAAA+TGG + Chr8:70875199-70875218 None:intergenic 20.0%
!! TTAATGACATTCAAAAAATG+GGG + Chr8:70875197-70875216 None:intergenic 20.0%
!!! TGAGCATTCTTTAAAAAAAA+GGG + Chr8:70876433-70876452 None:intergenic 20.0%
! AACAATAGGTAACTTCAAAA+TGG + Chr8:70876516-70876535 None:intergenic 25.0%
! AAGAATATGGTTTCAAATTG+CGG + Chr8:70875689-70875708 None:intergenic 25.0%
! AGAGAATATTCTGTTTAATC+GGG - Chr8:70875305-70875324 MsG0880046238.01.T01:intron 25.0%
! ATTCAACTACAAAGAACAAT+AGG + Chr8:70875750-70875769 None:intergenic 25.0%
! ATTGCATGATTTATAAACCA+TGG - Chr8:70875532-70875551 MsG0880046238.01.T01:intron 25.0%
! CAACTACACAGATTAAAAAA+GGG + Chr8:70875432-70875451 None:intergenic 25.0%
! CAGAGAATATTCTGTTTAAT+CGG - Chr8:70875304-70875323 MsG0880046238.01.T01:intron 25.0%
! CATAATTATTCAATAGCATG+TGG - Chr8:70875719-70875738 MsG0880046238.01.T01:intron 25.0%
! CATTAGACTTAACTATCAAA+CGG + Chr8:70875956-70875975 None:intergenic 25.0%
! CTTTATATGTTGGAAATGAA+TGG - Chr8:70875831-70875850 MsG0880046238.01.T01:intron 25.0%
! TCAACTACACAGATTAAAAA+AGG + Chr8:70875433-70875452 None:intergenic 25.0%
!! CTGAGCATTCTTTAAAAAAA+AGG + Chr8:70876434-70876453 None:intergenic 25.0%
!! TTAAGATTTAAGACCTTATC+AGG - Chr8:70875777-70875796 MsG0880046238.01.T01:intron 25.0%
!!! TACGAAATTGATTTTGTTAC+CGG + Chr8:70876780-70876799 None:intergenic 25.0%
AAAGAATGCTCAGTAATTTG+AGG - Chr8:70876236-70876255 MsG0880046238.01.T01:intron 30.0%
AACATATATACCTCAACCAT+GGG + Chr8:70876143-70876162 None:intergenic 30.0%
AAGAATGCTCAGTAATTTGA+GGG - Chr8:70876237-70876256 MsG0880046238.01.T01:intron 30.0%
ATACAAAGGTTCACAAAGAA+CGG + Chr8:70875589-70875608 None:intergenic 30.0%
ATATTCTGTTTAATCGGGTT+TGG - Chr8:70875310-70875329 MsG0880046238.01.T01:intron 30.0%
ATGCTGTCTAAATTGGTTAT+TGG - Chr8:70876678-70876697 MsG0880046238.01.T01:CDS 30.0%
ATTCAGAATATACAAAGGAG+AGG + Chr8:70876216-70876235 None:intergenic 30.0%
CATGATTATGCTGTCTAAAT+TGG - Chr8:70876671-70876690 MsG0880046238.01.T01:CDS 30.0%
CGTATAGGGTATAAAAGAAT+TGG - Chr8:70876796-70876815 MsG0880046238.01.T01:intron 30.0%
TAACCCATGTTCATTCAAAA+AGG - Chr8:70875338-70875357 MsG0880046238.01.T01:CDS 30.0%
TAGGGTATAAAAGAATTGGA+CGG - Chr8:70876800-70876819 MsG0880046238.01.T01:intron 30.0%
TATAAAAGAATTGGACGGTT+TGG - Chr8:70876805-70876824 MsG0880046238.01.T01:intron 30.0%
TCTAAATTGGTTATTGGAAG+AGG - Chr8:70876684-70876703 MsG0880046238.01.T01:intron 30.0%
TTGAAAAGTAACGACATACT+TGG + Chr8:70876635-70876654 None:intergenic 30.0%
TTGAAAGTGGATAAATTCAG+TGG - Chr8:70875890-70875909 MsG0880046238.01.T01:CDS 30.0%
! AATCCACATACAGTTTTCAA+TGG + Chr8:70875515-70875534 None:intergenic 30.0%
! ATCACCTTTTTGAATGAACA+TGG + Chr8:70875345-70875364 None:intergenic 30.0%
! CCTCAACATCTTTTATATTG+CGG - Chr8:70875656-70875675 MsG0880046238.01.T01:intron 30.0%
! TCACCTTTTTGAATGAACAT+GGG + Chr8:70875344-70875363 None:intergenic 30.0%
AAAGTGGATAAATTCAGTGG+AGG - Chr8:70875893-70875912 MsG0880046238.01.T01:CDS 35.0%
AGAATGCTCAGTAATTTGAG+GGG - Chr8:70876238-70876257 MsG0880046238.01.T01:intron 35.0%
AGAGATGTAGTTTAATCGAG+TGG - Chr8:70876467-70876486 MsG0880046238.01.T01:intron 35.0%
ATTAGTCGTAAAGGACTTGA+AGG - Chr8:70876859-70876878 MsG0880046238.01.T01:intron 35.0%
CAACATATATACCTCAACCA+TGG + Chr8:70876144-70876163 None:intergenic 35.0%
CAAGTACTTCCTCTCATAAA+TGG + Chr8:70876930-70876949 None:intergenic 35.0%
CAAGTCCTTTACGACTAATT+GGG + Chr8:70876858-70876877 None:intergenic 35.0%
CATCACGTTAATACCTGATA+AGG + Chr8:70875793-70875812 None:intergenic 35.0%
CCGCAATATAAAAGATGTTG+AGG + Chr8:70875659-70875678 None:intergenic 35.0%
CTGAGTAAAACAAATTCTCC+TGG + Chr8:70876734-70876753 None:intergenic 35.0%
CTTTGTATTGCAGCGATATT+CGG - Chr8:70875601-70875620 MsG0880046238.01.T01:intron 35.0%
GATCCATTGAAAACTGTATG+TGG - Chr8:70875509-70875528 MsG0880046238.01.T01:intron 35.0%
GCTACGTGGAAAATTGAATA+AGG - Chr8:70876074-70876093 MsG0880046238.01.T01:intron 35.0%
GTAGTTTAATCGAGTGGAAT+GGG - Chr8:70876473-70876492 MsG0880046238.01.T01:intron 35.0%
TATAAACCATGGTGAATCTG+TGG - Chr8:70875543-70875562 MsG0880046238.01.T01:intron 35.0%
TCAAGTCCTTTACGACTAAT+TGG + Chr8:70876859-70876878 None:intergenic 35.0%
TCTTGTGTAAAAACAGGGTA+AGG - Chr8:70876333-70876352 MsG0880046238.01.T01:CDS 35.0%
TGTAGTTTAATCGAGTGGAA+TGG - Chr8:70876472-70876491 MsG0880046238.01.T01:intron 35.0%
TTAAAACCACAGATTCACCA+TGG + Chr8:70875552-70875571 None:intergenic 35.0%
TTCATGACATGCAGTTGTAA+AGG - Chr8:70875996-70876015 MsG0880046238.01.T01:intron 35.0%
! CATCTTTTATATTGCGGTTG+CGG - Chr8:70875662-70875681 MsG0880046238.01.T01:intron 35.0%
! CTTTAAAAAAAAGGGCAACC+CGG + Chr8:70876425-70876444 None:intergenic 35.0%
!! CTGTAATTGCAAAGGTACTT+CGG - Chr8:70876972-70876991 MsG0880046238.01.T01:five_prime_UTR 35.0%
!!! GAATCTGTGGTTTTAAACTG+CGG - Chr8:70875556-70875575 MsG0880046238.01.T01:intron 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG + Chr8:70876334-70876353 None:intergenic 35.0%
AAGATTGTAAATATCCGGCC+AGG - Chr8:70876713-70876732 MsG0880046238.01.T01:intron 40.0%
AAGGTTGTACTTGCTTACAG+TGG - Chr8:70876093-70876112 MsG0880046238.01.T01:intron 40.0%
AATGCTTTCAACTGAGCCAT+TGG + Chr8:70875070-70875089 None:intergenic 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG - Chr8:70876327-70876346 MsG0880046238.01.T01:intron 40.0%
AGAGAGCGAAATGAAAACGA+AGG + Chr8:70875145-70875164 None:intergenic 40.0%
AGAGGATTGTGAACTTGTGA+TGG + Chr8:70876198-70876217 None:intergenic 40.0%
AGTAATTTGAGGGGTAACCT+TGG - Chr8:70876247-70876266 MsG0880046238.01.T01:intron 40.0%
CAGCCTCTTGTGTAAAAACA+GGG - Chr8:70876328-70876347 MsG0880046238.01.T01:intron 40.0%
CGAATATCGCTGCAATACAA+AGG + Chr8:70875603-70875622 None:intergenic 40.0%
GCGATATTCGGTCAAAATTG+TGG - Chr8:70875613-70875632 MsG0880046238.01.T01:intron 40.0%
GTAAAACAAATTCTCCTGGC+CGG + Chr8:70876730-70876749 None:intergenic 40.0%
GTACCTTTGCAATTACAGGA+CGG + Chr8:70876970-70876989 None:intergenic 40.0%
GTTCTTGTTCACTTCACCAA+TGG - Chr8:70875051-70875070 MsG0880046238.01.T01:CDS 40.0%
TACCTTTGCAATTACAGGAC+GGG + Chr8:70876969-70876988 None:intergenic 40.0%
TCTGTTTAATCGGGTTTGGA+AGG - Chr8:70875314-70875333 MsG0880046238.01.T01:CDS 40.0%
TTGAAACCAAGAGCTAGTGT+CGG - Chr8:70875449-70875468 MsG0880046238.01.T01:intron 40.0%
TTGTTGATGTGCTACATGTC+CGG - Chr8:70876758-70876777 MsG0880046238.01.T01:intron 40.0%
! ATTTGCGTCGATGTTGAAAG+TGG - Chr8:70875877-70875896 MsG0880046238.01.T01:CDS 40.0%
! CGAAGTACCTTTGCAATTAC+AGG + Chr8:70876974-70876993 None:intergenic 40.0%
!! ATGAGAGGAAGTACTTGCTT+GGG - Chr8:70876933-70876952 MsG0880046238.01.T01:exon 40.0%
!! TATGAGAGGAAGTACTTGCT+TGG - Chr8:70876932-70876951 MsG0880046238.01.T01:exon 40.0%
AAGGAGAACCTGTTGCATGA+AGG + Chr8:70875126-70875145 None:intergenic 45.0%
ACACATCAGTCATTGTCCCA+TGG - Chr8:70876124-70876143 MsG0880046238.01.T01:intron 45.0%
AGCCTCCCAATTAGTCGTAA+AGG - Chr8:70876850-70876869 MsG0880046238.01.T01:intron 45.0%
AGGAGAACCTGTTGCATGAA+GGG + Chr8:70875125-70875144 None:intergenic 45.0%
AGTCGTAAAGGACTTGAAGG+AGG - Chr8:70876862-70876881 MsG0880046238.01.T01:intron 45.0%
CGTGCAATACACCAAATGGT+GGG - Chr8:70876359-70876378 MsG0880046238.01.T01:CDS 45.0%
GAAGATTCCGAAGCCAAGAA+GGG - Chr8:70876045-70876064 MsG0880046238.01.T01:intron 45.0%
GACTTGAACCCATGACCTTA+CGG + Chr8:70876301-70876320 None:intergenic 45.0%
GTAGTAGCGCATAGATGTGA+AGG + Chr8:70875094-70875113 None:intergenic 45.0%
GTCCTTTACGACTAATTGGG+AGG + Chr8:70876855-70876874 None:intergenic 45.0%
GTTGTACTTGCTTACAGTGG+TGG - Chr8:70876096-70876115 MsG0880046238.01.T01:intron 45.0%
GTTGTTGTCATGTGACCGTA+AGG - Chr8:70876283-70876302 MsG0880046238.01.T01:intron 45.0%
TCATGTGACCGTAAGGTCAT+GGG - Chr8:70876290-70876309 MsG0880046238.01.T01:intron 45.0%
TGAAGATTCCGAAGCCAAGA+AGG - Chr8:70876044-70876063 MsG0880046238.01.T01:intron 45.0%
! TTACACAAGAGGCTGTTTCC+AGG + Chr8:70876323-70876342 None:intergenic 45.0%
!! TGGTGCTGCAGAGAGAATTA+TGG - Chr8:70876576-70876595 MsG0880046238.01.T01:intron 45.0%
AAGGTCATGGGTTCAAGTCC+TGG - Chr8:70876302-70876321 MsG0880046238.01.T01:intron 50.0%
AATTACAGGACGGGCCATTG+AGG + Chr8:70876960-70876979 None:intergenic 50.0%
ACAACCTAATTGCGTGCGTG+CGG + Chr8:70875025-70875044 None:intergenic 50.0%
ACTCCTTCCCTTCATGCAAC+AGG - Chr8:70875115-70875134 MsG0880046238.01.T01:CDS 50.0%
CAACTTTACCAGTTGCGCCA+AGG + Chr8:70876267-70876286 None:intergenic 50.0%
CAGTCATTGTCCCATGGTTG+AGG - Chr8:70876130-70876149 MsG0880046238.01.T01:intron 50.0%
GAACCTGTTGCATGAAGGGA+AGG + Chr8:70875121-70875140 None:intergenic 50.0%
GAAGCCAAAGCAAAAGCCAG+TGG - Chr8:70876827-70876846 MsG0880046238.01.T01:intron 50.0%
GCGTGCAATACACCAAATGG+TGG - Chr8:70876358-70876377 MsG0880046238.01.T01:CDS 50.0%
GCTGCGTGCAATACACCAAA+TGG - Chr8:70876355-70876374 MsG0880046238.01.T01:CDS 50.0%
GGCAGTATCACGCAGTCATA+CGG - Chr8:70876017-70876036 MsG0880046238.01.T01:intron 50.0%
GTACTTGCTTGGGACCTCAA+TGG - Chr8:70876943-70876962 MsG0880046238.01.T01:five_prime_UTR 50.0%
GTATCACGCAGTCATACGGA+TGG - Chr8:70876021-70876040 MsG0880046238.01.T01:intron 50.0%
GTATTTCCTTGCTTGCGTGC+TGG - Chr8:70876902-70876921 MsG0880046238.01.T01:CDS 50.0%
GTCATGTGACCGTAAGGTCA+TGG - Chr8:70876289-70876308 MsG0880046238.01.T01:intron 50.0%
GTGTGCTTCACTGCTGATGT+TGG - Chr8:70876609-70876628 MsG0880046238.01.T01:intron 50.0%
!! GTGCTGGTGCCATTTATGAG+AGG - Chr8:70876918-70876937 MsG0880046238.01.T01:exon 50.0%
AAAGCCGCACGCACGCAATT+AGG - Chr8:70875018-70875037 MsG0880046238.01.T01:CDS 55.0%
ACTGAAGCTCCCGCATATGC+AGG + Chr8:70876399-70876418 None:intergenic 55.0%
CTGAAGCTCCCGCATATGCA+GGG + Chr8:70876398-70876417 None:intergenic 55.0%
GACTAATTGGGAGGCTCCAC+TGG + Chr8:70876846-70876865 None:intergenic 55.0%
GGCCCGTCCTGTAATTGCAA+AGG - Chr8:70876964-70876983 MsG0880046238.01.T01:five_prime_UTR 55.0%
TAATTGCGTGCGTGCGGCTT+TGG + Chr8:70875019-70875038 None:intergenic 55.0%
TCCGAAGCCAAGAAGGGTAG+CGG - Chr8:70876051-70876070 MsG0880046238.01.T01:intron 55.0%
!! GTCGGTGCTGGTAGACTTCA+AGG - Chr8:70875467-70875486 MsG0880046238.01.T01:intron 55.0%
!!! GGCTCCACTGGCTTTTGCTT+TGG + Chr8:70876834-70876853 None:intergenic 55.0%
ACGTAGCCCGCTACCCTTCT+TGG + Chr8:70876061-70876080 None:intergenic 60.0%
AGGGGTAACCTTGGCGCAAC+TGG - Chr8:70876256-70876275 MsG0880046238.01.T01:intron 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG - Chr8:70876403-70876422 MsG0880046238.01.T01:intron 60.0%
ATGGCACCAGCACGCAAGCA+AGG + Chr8:70876911-70876930 None:intergenic 60.0%
CATATGCAGGGTCCGGGAAG+GGG + Chr8:70876386-70876405 None:intergenic 60.0%
CCCGCTACCCTTCTTGGCTT+CGG + Chr8:70876055-70876074 None:intergenic 60.0%
CCGAAGCCAAGAAGGGTAGC+GGG - Chr8:70876052-70876071 MsG0880046238.01.T01:intron 60.0%
CTTCCCGGACCCTGCATATG+CGG - Chr8:70876386-70876405 MsG0880046238.01.T01:intron 60.0%
GCATATGCAGGGTCCGGGAA+GGG + Chr8:70876387-70876406 None:intergenic 60.0%
TTCCCGGACCCTGCATATGC+GGG - Chr8:70876387-70876406 MsG0880046238.01.T01:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - Chr8:70876371-70876390 MsG0880046238.01.T01:CDS 60.0%
!! AAGAAGGGTAGCGGGCTACG+TGG - Chr8:70876060-70876079 MsG0880046238.01.T01:intron 60.0%
!! CCAAGAGCTAGTGTCGGTGC+TGG - Chr8:70875455-70875474 MsG0880046238.01.T01:intron 60.0%
!! CCAGCACCGACACTAGCTCT+TGG + Chr8:70875458-70875477 None:intergenic 60.0%
CGCATATGCAGGGTCCGGGA+AGG + Chr8:70876388-70876407 None:intergenic 65.0%
CGGGAAGGGGTCCCACCATT+TGG + Chr8:70876373-70876392 None:intergenic 65.0%
CTCCCGCATATGCAGGGTCC+GGG + Chr8:70876392-70876411 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG + Chr8:70876393-70876412 None:intergenic 65.0%
TGCGGGAGCTTCAGTGCACC+GGG - Chr8:70876404-70876423 MsG0880046238.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 70875000 70877006 70875000 ID=MsG0880046238.01;Name=MsG0880046238.01
Chr8 mRNA 70875000 70877006 70875000 ID=MsG0880046238.01.T01;Parent=MsG0880046238.01;Name=MsG0880046238.01.T01;_AED=0.41;_eAED=0.51;_QI=70|0.5|0.42|1|0.83|0.85|7|0|236
Chr8 exon 70875000 70875203 70875000 ID=MsG0880046238.01.T01:exon:15346;Parent=MsG0880046238.01.T01
Chr8 exon 70875314 70875419 70875314 ID=MsG0880046238.01.T01:exon:15345;Parent=MsG0880046238.01.T01
Chr8 exon 70875855 70875996 70875855 ID=MsG0880046238.01.T01:exon:15344;Parent=MsG0880046238.01.T01
Chr8 exon 70876329 70876392 70876329 ID=MsG0880046238.01.T01:exon:15343;Parent=MsG0880046238.01.T01
Chr8 exon 70876483 70876557 70876483 ID=MsG0880046238.01.T01:exon:15342;Parent=MsG0880046238.01.T01
Chr8 exon 70876647 70876699 70876647 ID=MsG0880046238.01.T01:exon:15341;Parent=MsG0880046238.01.T01
Chr8 exon 70876870 70877006 70876870 ID=MsG0880046238.01.T01:exon:15340;Parent=MsG0880046238.01.T01
Chr8 five_prime_UTR 70876937 70877006 70876937 ID=MsG0880046238.01.T01:five_prime_utr;Parent=MsG0880046238.01.T01
Chr8 CDS 70876870 70876936 70876870 ID=MsG0880046238.01.T01:cds;Parent=MsG0880046238.01.T01
Chr8 CDS 70876647 70876699 70876647 ID=MsG0880046238.01.T01:cds;Parent=MsG0880046238.01.T01
Chr8 CDS 70876483 70876557 70876483 ID=MsG0880046238.01.T01:cds;Parent=MsG0880046238.01.T01
Chr8 CDS 70876329 70876392 70876329 ID=MsG0880046238.01.T01:cds;Parent=MsG0880046238.01.T01
Chr8 CDS 70875855 70875996 70875855 ID=MsG0880046238.01.T01:cds;Parent=MsG0880046238.01.T01
Chr8 CDS 70875314 70875419 70875314 ID=MsG0880046238.01.T01:cds;Parent=MsG0880046238.01.T01
Chr8 CDS 70875000 70875203 70875000 ID=MsG0880046238.01.T01:cds;Parent=MsG0880046238.01.T01
Gene Sequence

>MsG0880046238.01.T01

ATGGCTCAGTTGAAAGCATTTCCTTCACATCTATGCGCTACTACTACTCCTTCCCTTCATGCAACAGAGAATATTCTGTTTAATCGGGTTTGGAAGGCTAACCCATGTTCATTCAAAAAGTTGAAACCAAGAGCTAGTGTCGGTGCTGGTAGACTTCAAGGTGAGATTATTTTGTCTCAAGATCCATTGAAAACTCGATATTCGGTCAAAATTGTGGTTACGACACTGTTGCAGAGACCTCAACATCTTTTATATTGCGTTGTAAAGGCAGTATCACGCAGTCATACGGATGGTGAAGATTCCGAAGCCAAGAAGGGTAGCGGGCTACGTGGAAAATTGAATAAGGTTGTACTTGCTTACAGTGGTGGCTTAGACACATCAGTCATTGTCCCATGGTTGAGAGAGAATTATGGTTGTGATGTTGTGTGCTTCACTGCTGATGTTGGCCAAGTATGTCGTTACTTTTCAAATTTATTTCGTCTAATCATGATTATGCTGTCTAAATTGGGTATAAAAGAATTGGACGGTTTGGAAGCCAAAGCAAAAGCCAGTGGAGCCTCCCAATTAGTCGTAAAGGACTTGAAGGAGGAATTTGTTAAAGATTACGTATTTCCTTGCTTGCGTGCTGGTGCCATTTATGAGAGGAAGTACTTGCTTGGGACCTCAATGGCCCGTCCTGTAATTGCAAAGGTACTTCGGCTTGAAGTTTGA
Protein sequence

>MsG0880046238.01.T01

MAQLKAFPSHLCATTTPSLHATENILFNRVWKANPCSFKKLKPRASVGAGRLQGEIILSQDPLKTRYSVKIVVTTLLQRPQHLLYCVVKAVSRSHTDGEDSEAKKGSGLRGKLNKVVLAYSGGLDTSVIVPWLRENYGCDVVCFTADVGQVCRYFSNLFRLIMIMLSKLGIKELDGLEAKAKASGASQLVVKDLKEEFVKDYVFPCLRAGAIYERKYLLGTSMARPVIAKVLRLEV*