AlfalfaGEDB | MsG0380017795.01

M. sativa cultivar ZhongmuNo.1 / MsG0380017795.01

KEGG: -
GO: GO:0016747
PFAM: PF02458

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017795.01.T01	XP_013462152.1	96.732	459	10	1	1	454	1	459	0	915

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017795.01.T01	P0DO25	38.515	431	232	16	20	433	14	428	1.04E-73	241

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017795.01.T01	A0A072V2V4	96.732	459	10	1	1	454	1	459	0.0	915

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
MsG0380017795.01	MsG0680034332.01	PPI
MsG0380017795.01	MsG0580029362.01	PPI
MsG0580029361.01	MsG0380017795.01	PPI
MsG0580029363.01	MsG0380017795.01	PPI

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017795.01.T01	MTR_3g112180	96.732	459	10	1	1	454	1	459	0.0	915
MsG0380017795.01.T01	MTR_3g071320	37.269	432	244	11	20	434	13	434	3.26e-86	271
MsG0380017795.01.T01	MTR_8g096530	32.735	446	271	13	18	449	13	443	1.20e-65	218
MsG0380017795.01.T01	MTR_1g053315	35.000	440	245	17	19	428	25	453	3.39e-63	212
MsG0380017795.01.T01	MTR_7g027175	32.634	429	258	13	20	433	24	436	1.41e-60	204
MsG0380017795.01.T01	MTR_5g076700	31.841	402	243	14	14	399	13	399	3.21e-59	201
MsG0380017795.01.T01	MTR_3g098980	32.009	428	262	13	15	429	18	429	4.50e-58	197
MsG0380017795.01.T01	MTR_1g040175	34.536	388	226	12	20	393	17	390	1.58e-57	196
MsG0380017795.01.T01	MTR_7g114490	32.908	392	236	11	20	397	18	396	3.54e-57	197
MsG0380017795.01.T01	MTR_7g114560	33.249	394	235	13	14	393	13	392	1.68e-55	191

Showing 1 to 10 of 85 entries

Previous1 2 3 4 5…9Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017795.01.T01	AT1G27620	60.899	445	160	7	6	445	3	438	0.0	546
MsG0380017795.01.T01	AT2G40230	40.984	427	225	13	18	429	11	425	5.90e-92	285
MsG0380017795.01.T01	AT5G41040	33.099	426	254	12	20	429	25	435	3.08e-67	221
MsG0380017795.01.T01	AT5G41040	33.099	426	254	12	20	429	41	451	4.61e-67	221
MsG0380017795.01.T01	AT5G63560	33.108	444	265	16	1	432	1	424	3.11e-64	213
MsG0380017795.01.T01	AT3G48720	32.710	428	259	13	20	433	17	429	4.63e-63	210
MsG0380017795.01.T01	AT1G03390	33.484	442	255	15	11	428	25	451	2.20e-61	207
MsG0380017795.01.T01	AT3G03480	33.676	389	228	12	20	393	27	400	2.27e-52	183
MsG0380017795.01.T01	AT5G07080	30.735	449	256	17	17	432	19	445	2.65e-46	166
MsG0380017795.01.T01	AT5G17540	30.711	394	246	13	20	399	17	397	9.36e-45	162

Showing 1 to 10 of 37 entries

Previous1 2 3 4Next

Find 121 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAATAATAAATAGAA+GGG	0.509439	3:+100737884	None:intergenic
AACACGTGGCGCCAGTGGAA+GGG	0.554156	3:+100735753	None:intergenic
AACCTACCAAAAGGATATTA+CGG	0.444592	3:-100735429	MsG0380017795.01.T01:CDS
AACGGATGTATCAACTAGCT+TGG	0.489906	3:-100735247	MsG0380017795.01.T01:CDS
AACTTCCTCCATGACTTGTT+TGG	0.373591	3:+100737413	None:intergenic
AACTTGAGGAGGTTTACTTG+AGG	0.644894	3:+100735666	None:intergenic
AAGCTTGAAGTGGATTGCAA+TGG	0.596995	3:-100737506	MsG0380017795.01.T01:CDS
AAGGTAGTACACTTAAGTGA+AGG	0.583790	3:+100735564	None:intergenic
AAGTAGCTTCACAATTAGAG+TGG	0.583672	3:+100735479	None:intergenic
AAGTAGTGGCAGCACACACG+TGG	0.645012	3:-100735539	MsG0380017795.01.T01:CDS

Showing 1 to 10 of 121 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACATGAGAGGAGTTTATTT+CGG	+	Chr3:100736298-100736317	None:intergenic	30.0%
AACCTACCAAAAGGATATTA+CGG	-	Chr3:100737284-100737303	MsG0380017795.01.T01:intron	30.0%
AAGAGAGTCAAAAACAGAAA+AGG	+	Chr3:100734849-100734868	None:intergenic	30.0%
AATCTAACCTGAACTATAAG+AGG	+	Chr3:100735366-100735385	None:intergenic	30.0%
ATAAATGATGTGGGTACTAA+GGG	+	Chr3:100737086-100737105	None:intergenic	30.0%
ATATCACAATGGTCTAAACT+AGG	-	Chr3:100737491-100737510	MsG0380017795.01.T01:CDS	30.0%
ATGACATTACATATGATCAG+GGG	+	Chr3:100735451-100735470	None:intergenic	30.0%
ATTACAAAGACATAGCCAAA+AGG	+	Chr3:100737802-100737821	None:intergenic	30.0%
CAAAAGGATATTACGGAAAT+GGG	-	Chr3:100737291-100737310	MsG0380017795.01.T01:intron	30.0%
GAATGACATTACATATGATC+AGG	+	Chr3:100735453-100735472	None:intergenic	30.0%

Showing 1 to 10 of 181 entries

Previous1 2 3 4 5…19Next

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	100734821	100737914	100734821	ID=MsG0380017795.01;Name=MsG0380017795.01
Chr3	mRNA	100734821	100737914	100734821	ID=MsG0380017795.01.T01;Parent=MsG0380017795.01;Name=MsG0380017795.01.T01;_AED=0.25;_eAED=0.25;_QI=116\|1\|1\|1\|1\|1\|2\|169\|454
Chr3	exon	100734821	100735913	100734821	ID=MsG0380017795.01.T01:exon:27418;Parent=MsG0380017795.01.T01
Chr3	exon	100737358	100737914	100737358	ID=MsG0380017795.01.T01:exon:27417;Parent=MsG0380017795.01.T01
Chr3	five_prime_UTR	100737799	100737914	100737799	ID=MsG0380017795.01.T01:five_prime_utr;Parent=MsG0380017795.01.T01
Chr3	CDS	100737358	100737798	100737358	ID=MsG0380017795.01.T01:cds;Parent=MsG0380017795.01.T01
Chr3	CDS	100734990	100735913	100734990	ID=MsG0380017795.01.T01:cds;Parent=MsG0380017795.01.T01
Chr3	three_prime_UTR	100734821	100734989	100734821	ID=MsG0380017795.01.T01:three_prime_utr;Parent=MsG0380017795.01.T01

Gene Sequence

>MsG0380017795.01.T01

ATGTCAAAATCAATGGAACTCCCTGATTGTATCTATCCATGCCAACCAATCACTAGTATTCCACCAAGTGTTCCAACGCCAAAACATTCTCTCTATCTTTCTAATCTTGATGACCAAAAGTTCCTTAGATTTTCTATCAAGTATTTGTACATTTTCAAGAAATCTGTGAATTTGGATCATTTGAAGTGTTCTCTATCAAGAGTTTTAGTGGATTATTACCCTTTAGCTGGGAGGTTGAGAAGTTGTTCCTCTAATTTGGATGATGAGAAGAAGCTTGAAGTGGATTGCAATGGAGAAGGTGCTTTGTTTGTTGAGGCTTTCATGTCTATAACTGCTGAAGAATTACTTGAACCTTCTAAGTTGCCAAACAAGTCATGGAGGAAGTTCACGTATAAGGTGGAATCTCAAAGTTTCTTAGATGTTCCTCCTCTTATAGTTCAGTCAACAAGTCTCCGTTGCGGAGGAATGATTCTATGCACCGCAATCAACCACTGCCTATGCGATGGTATTGGCACATCTCAATTTCTACACGCATGGGCACAACTAACCAAAAATCCTCAAACCAATTTGACCATCCCACCCTTCCACTGGCGCCACGTGTTGAAACCACGATACCCTCCCACCGTAAACCTCCTCAATCCCGGATACACTAGAACACAACCAACACCTCAAGTAAACCTCCTCAAGTTAATACAATCACAACCCTTAGTACCCACATCATTTATCTTTAATCCCTCCCATGTCCTCTACTTAAAGAAACAATGTGTCCCTTCACTTAAGTGTACTACCTTTGAAGTAGTGGCAGCACACACGTGGCGCTCTTGGATTCGTTCAATGAATTTATCATTACCCTCCACTCTAATTGTGAAGCTACTTTTCTCTATTAACATTCGTACCATAATGAACCTACCAAAAGGATATTACGGAAATGGGTTTCTATTAGGATGTGCTGAAAGTACTATAAAGGACTTGGTAGAGAATAATTTGCATCATGGTGTGAAGTTAGTGCAAAAGGCTAAGTCAACGGTTAATGATGAGGAATATATTAGATCAACGGTTGATTTGTTGGAGGATAAAACAGTTAAAACGGATGTATCAACTAGCTTGGTTATATCACAATGGTCTAAACTAGGGTTAGAAGAAGTGGATTTTGGAGAGGGAAAAGCGTTACATATGGGTCCTTTAACAAGTGATGTTTATTGCTTATTTTTACCGGTTATTGGTGGTGATGTTAATGCTGTGAGAATGGTTGTTTCTGTGCCGGAGAGTATGGTTGAAAATTTTCAATATTATATGAAGGAAAGCTGGGAAAGGAAAATAGAAAAAAATGAGGATCATCATGTGCATGAGAATCCATTTTTCTAA

Protein sequence

>MsG0380017795.01.T01

MSKSMELPDCIYPCQPITSIPPSVPTPKHSLYLSNLDDQKFLRFSIKYLYIFKKSVNLDHLKCSLSRVLVDYYPLAGRLRSCSSNLDDEKKLEVDCNGEGALFVEAFMSITAEELLEPSKLPNKSWRKFTYKVESQSFLDVPPLIVQSTSLRCGGMILCTAINHCLCDGIGTSQFLHAWAQLTKNPQTNLTIPPFHWRHVLKPRYPPTVNLLNPGYTRTQPTPQVNLLKLIQSQPLVPTSFIFNPSHVLYLKKQCVPSLKCTTFEVVAAHTWRSWIRSMNLSLPSTLIVKLLFSINIRTIMNLPKGYYGNGFLLGCAESTIKDLVENNLHHGVKLVQKAKSTVNDEEYIRSTVDLLEDKTVKTDVSTSLVISQWSKLGLEEVDFGEGKALHMGPLTSDVYCLFLPVIGGDVNAVRMVVSVPESMVENFQYYMKESWERKIEKNEDHHVHENPFF*