AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680034332.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034332.01.T01 MTR_5g084870 84.919 431 63 1 1 429 1 431 0.0 774
MsG0680034332.01.T01 MTR_5g084850 80.415 434 76 4 1 429 1 430 0.0 721
MsG0680034332.01.T01 MTR_8g079970 77.346 437 91 3 1 429 1 437 0.0 702
MsG0680034332.01.T01 MTR_8g079950 74.142 437 105 4 1 429 1 437 0.0 676
MsG0680034332.01.T01 MTR_5g084900 76.862 376 58 3 56 429 6 354 0.0 590
MsG0680034332.01.T01 MTR_8g079980 58.864 440 166 5 1 429 1 436 0.0 515
MsG0680034332.01.T01 MTR_3g086020 37.705 427 240 12 1 419 3 411 4.86e-88 274
MsG0680034332.01.T01 MTR_2g007880 33.846 455 256 11 1 426 15 453 4.57e-76 244
MsG0680034332.01.T01 MTR_8g467580 31.416 452 273 13 1 427 1 440 4.51e-58 197
MsG0680034332.01.T01 MTR_8g467590 30.396 454 275 15 1 427 1 440 4.89e-55 189
MsG0680034332.01.T01 MTR_1g094790 30.472 466 262 16 1 426 1 444 1.34e-51 180
MsG0680034332.01.T01 MTR_7g110540 66.667 123 23 1 1 123 1 105 4.41e-48 165
MsG0680034332.01.T01 MTR_7g110540 46.053 152 47 4 238 389 104 220 1.83e-36 134
MsG0680034332.01.T01 MTR_7g085990 25.478 471 275 19 3 416 2 453 9.09e-27 112
MsG0680034332.01.T01 MTR_4g127650 23.451 452 301 13 2 416 9 452 3.67e-26 110
MsG0680034332.01.T01 MTR_7g085930 24.788 472 283 17 3 417 6 462 1.39e-25 108
MsG0680034332.01.T01 MTR_8g096530 24.706 425 270 16 23 418 25 428 2.19e-25 108
MsG0680034332.01.T01 MTR_4g007540 21.513 423 281 17 27 416 25 429 6.35e-25 106
MsG0680034332.01.T01 MTR_3g026950 24.263 441 273 16 3 397 2 427 1.20e-24 105
MsG0680034332.01.T01 MTR_2g105330 22.616 451 292 16 1 416 1 429 1.29e-24 105
MsG0680034332.01.T01 MTR_2g064495 22.395 451 293 16 1 416 1 429 1.42e-24 105
MsG0680034332.01.T01 MTR_5g076700 25.362 414 240 18 9 385 16 397 6.18e-24 103
MsG0680034332.01.T01 MTR_4g013050 24.318 440 256 15 10 416 11 406 2.36e-23 101
MsG0680034332.01.T01 MTR_3g049150 24.554 448 296 14 10 424 9 447 6.58e-23 100
MsG0680034332.01.T01 MTR_5g084920 81.034 58 10 1 1 58 1 57 9.19e-23 91.3
MsG0680034332.01.T01 MTR_1g040215 23.881 402 257 15 2 375 8 388 1.18e-22 100
MsG0680034332.01.T01 MTR_5g026320 24.009 429 274 13 2 397 17 426 1.63e-22 99.8
MsG0680034332.01.T01 MTR_3g098980 22.273 440 295 16 2 414 11 430 2.51e-22 99.0
MsG0680034332.01.T01 MTR_8g075610 22.556 399 269 16 41 413 30 414 2.58e-22 99.0
MsG0680034332.01.T01 MTR_4g055170 25.495 455 276 18 11 420 20 456 6.46e-21 95.1
MsG0680034332.01.T01 MTR_4g094842 26.869 428 256 18 3 390 4 414 1.00e-19 91.3
MsG0680034332.01.T01 MTR_4g094838 24.828 435 260 14 17 419 29 428 3.43e-19 89.7
MsG0680034332.01.T01 MTR_3g112180 22.727 440 275 14 10 413 19 429 2.38e-18 87.4
MsG0680034332.01.T01 MTR_1g040175 23.325 403 244 16 9 375 15 388 2.98e-18 87.0
MsG0680034332.01.T01 MTR_1g053315 23.690 439 271 21 1 396 16 433 4.16e-18 86.7
MsG0680034332.01.T01 MTR_7g086000 22.756 479 300 17 1 424 2 465 4.60e-18 86.7
MsG0680034332.01.T01 MTR_7g114560 29.885 174 110 5 9 174 16 185 9.91e-18 85.5
MsG0680034332.01.T01 MTR_7g027175 22.488 418 274 15 1 390 13 408 2.68e-17 84.0
MsG0680034332.01.T01 MTR_7g014200 24.074 432 271 14 16 397 20 444 3.40e-17 84.0
MsG0680034332.01.T01 MTR_5g090830 24.048 420 256 16 3 375 10 413 1.51e-16 82.0
MsG0680034332.01.T01 MTR_1g040315 27.869 183 122 5 2 177 8 187 1.74e-16 81.3
MsG0680034332.01.T01 MTR_4g022670 26.698 427 246 21 3 387 4 405 1.88e-16 81.3
MsG0680034332.01.T01 MTR_7g014620 24.823 423 257 16 24 403 13 417 2.74e-16 80.9
MsG0680034332.01.T01 MTR_4g094835 25.849 383 226 18 51 395 57 419 3.75e-16 80.5
MsG0680034332.01.T01 MTR_7g114550 29.944 177 106 6 9 174 16 185 4.00e-16 80.5
MsG0680034332.01.T01 MTR_7g114490 22.943 401 249 17 9 375 16 390 5.98e-16 80.1
MsG0680034332.01.T01 MTR_7g114520 30.769 182 105 8 9 177 17 190 1.48e-15 79.0
MsG0680034332.01.T01 MTR_5g090810 23.095 420 260 16 3 375 10 413 1.83e-15 78.6
MsG0680034332.01.T01 MTR_1g040320 31.667 180 105 6 9 177 15 187 3.42e-15 77.4
MsG0680034332.01.T01 MTR_8g041770 25.316 395 246 16 17 385 31 402 5.80e-15 77.0
MsG0680034332.01.T01 MTR_3g100150 26.829 164 112 4 10 169 18 177 2.14e-14 75.5
MsG0680034332.01.T01 MTR_1g081660 22.321 448 295 16 9 423 24 451 2.16e-14 75.1
MsG0680034332.01.T01 MTR_2g036780 27.108 166 113 4 10 171 19 180 2.28e-14 75.1
MsG0680034332.01.T01 MTR_1g011660 28.205 156 105 4 22 172 23 176 7.17e-14 73.6
MsG0680034332.01.T01 MTR_3g101900 24.161 447 310 16 3 424 7 449 7.52e-14 73.6
MsG0680034332.01.T01 MTR_3g071320 22.697 445 281 19 11 415 13 434 1.25e-13 72.8
MsG0680034332.01.T01 MTR_3g102010 23.851 457 307 18 3 426 7 455 3.50e-13 71.6
MsG0680034332.01.T01 MTR_1g035890 26.786 168 113 5 10 171 18 181 6.00e-13 70.5
MsG0680034332.01.T01 MTR_5g090880 22.652 362 232 12 52 373 60 413 7.17e-12 67.4
MsG0680034332.01.T01 MTR_4g094832 25.444 338 212 14 82 395 82 403 2.24e-11 65.9
MsG0680034332.01.T01 MTR_7g110610 26.486 185 118 8 1 177 3 177 4.46e-11 64.7
MsG0680034332.01.T01 MTR_8g039950 33.333 120 66 5 9 121 15 127 7.04e-11 60.1
MsG0680034332.01.T02 MTR_5g084870 85.821 134 19 0 1 134 298 431 8.75e-84 252
MsG0680034332.01.T02 MTR_5g084850 76.471 136 30 1 1 134 295 430 4.03e-74 227
MsG0680034332.01.T02 MTR_5g084900 76.866 134 23 1 1 134 229 354 4.98e-72 219
MsG0680034332.01.T02 MTR_8g079970 74.453 137 32 1 1 134 301 437 1.02e-69 216
MsG0680034332.01.T02 MTR_8g079950 70.073 137 38 1 1 134 301 437 3.49e-66 207
MsG0680034332.01.T02 MTR_8g079980 64.122 131 42 2 9 134 306 436 8.32e-54 175
MsG0680034332.01.T02 MTR_2g007880 45.192 104 54 2 30 131 351 453 2.53e-22 91.3
MsG0680034332.01.T02 MTR_3g086020 52.941 68 32 0 57 124 344 411 6.41e-21 87.0
MsG0680034332.01.T02 MTR_8g467580 40.426 94 51 2 42 132 349 440 1.20e-15 72.4
MsG0680034332.01.T02 MTR_8g467590 41.667 84 44 2 52 132 359 440 7.02e-15 70.1
MsG0680034332.01.T02 MTR_7g110540 40.000 85 50 1 10 94 137 220 3.50e-13 64.7
MsG0680034332.01.T02 MTR_1g094790 40.789 76 40 2 59 131 371 444 3.28e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034332.01.T01 AT3G26040 35.214 443 261 13 1 427 1 433 5.89e-81 256
MsG0680034332.01.T01 AT1G24430 33.790 438 268 9 1 427 3 429 2.62e-74 239
MsG0680034332.01.T01 AT4G15390 32.207 444 278 12 1 427 6 443 8.09e-67 220
MsG0680034332.01.T01 AT4G15390 32.207 444 278 12 1 427 6 443 8.09e-67 220
MsG0680034332.01.T01 AT1G24420 35.714 448 244 17 3 426 5 432 1.72e-66 219
MsG0680034332.01.T01 AT1G24420 35.714 448 244 17 3 426 5 432 1.72e-66 219
MsG0680034332.01.T01 AT3G30280 31.920 448 273 15 1 427 4 440 2.91e-65 216
MsG0680034332.01.T01 AT5G23970 32.816 451 253 16 1 427 1 425 9.79e-64 211
MsG0680034332.01.T01 AT5G47950 31.473 448 258 14 1 427 4 423 1.56e-58 197
MsG0680034332.01.T01 AT5G47980 32.962 449 266 17 1 426 3 439 8.41e-57 193
MsG0680034332.01.T01 AT4G15400 28.384 458 265 17 2 426 4 431 8.21e-40 148
MsG0680034332.01.T01 AT5G48930 23.714 447 289 19 1 414 1 428 4.32e-28 115
MsG0680034332.01.T01 AT2G19070 25.670 448 281 18 10 416 11 447 5.53e-28 115
MsG0680034332.01.T01 AT3G48720 24.485 437 272 18 9 413 15 425 3.61e-26 110
MsG0680034332.01.T01 AT5G63560 24.476 429 274 17 11 413 17 421 5.29e-26 109
MsG0680034332.01.T01 AT5G41040 25.445 393 240 14 11 373 25 394 6.47e-26 109
MsG0680034332.01.T01 AT5G41040 25.445 393 240 14 11 373 41 410 6.70e-26 109
MsG0680034332.01.T01 AT5G17540 22.374 438 296 16 9 417 15 437 3.68e-21 95.9
MsG0680034332.01.T01 AT1G31490 23.834 386 255 11 11 373 14 383 3.15e-20 92.8
MsG0680034332.01.T01 AT5G67150 25.652 460 283 20 2 421 4 444 5.94e-20 92.0
MsG0680034332.01.T01 AT1G65450 24.318 440 281 16 11 417 26 446 7.72e-20 91.7
MsG0680034332.01.T01 AT5G57840 23.415 410 262 14 1 375 1 393 1.46e-19 90.9
MsG0680034332.01.T01 AT4G31910 24.641 418 249 14 2 371 8 407 1.38e-15 79.0
MsG0680034332.01.T01 AT1G78990 24.784 347 215 14 59 375 67 397 1.54e-15 79.0
MsG0680034332.01.T01 AT5G38130 25.278 360 229 15 41 373 64 410 3.17e-14 74.7
MsG0680034332.01.T01 AT2G25150 21.903 452 296 18 9 420 19 453 3.49e-14 74.7
MsG0680034332.01.T01 AT1G32910 24.332 374 228 14 38 375 46 400 5.31e-14 73.9
MsG0680034332.01.T01 AT5G07860 23.400 453 298 17 2 419 7 445 1.11e-13 73.2
MsG0680034332.01.T01 AT1G27620 21.578 431 285 15 11 413 17 422 1.16e-13 72.8
MsG0680034332.01.T01 AT5G67160 25.073 343 221 13 55 373 52 382 1.24e-13 72.8
MsG0680034332.01.T01 AT5G07870 23.542 463 305 19 2 423 7 461 1.65e-11 66.2
MsG0680034332.01.T01 AT4G29250 27.381 168 94 6 22 169 32 191 2.05e-11 65.9
MsG0680034332.01.T02 AT1G24430 42.424 132 76 0 1 132 298 429 9.97e-31 114
MsG0680034332.01.T02 AT3G26040 53.947 76 35 0 57 132 358 433 5.97e-23 93.2
MsG0680034332.01.T02 AT1G24420 45.000 100 52 2 35 131 333 432 1.13e-22 92.4
MsG0680034332.01.T02 AT1G24420 45.000 100 52 2 35 131 333 432 1.13e-22 92.4
MsG0680034332.01.T02 AT3G30280 43.210 81 45 1 53 132 360 440 2.01e-20 85.9
MsG0680034332.01.T02 AT5G23970 33.333 135 84 2 3 132 292 425 3.15e-20 85.5
MsG0680034332.01.T02 AT4G15390 43.210 81 45 1 53 132 363 443 1.00e-19 84.0
MsG0680034332.01.T02 AT4G15390 43.210 81 45 1 53 132 363 443 1.00e-19 84.0
MsG0680034332.01.T02 AT5G47980 33.577 137 75 3 7 131 307 439 1.38e-18 80.9
MsG0680034332.01.T02 AT4G15400 36.066 122 58 3 32 134 314 434 1.15e-16 75.5
MsG0680034332.01.T02 AT5G47950 39.506 81 48 1 53 132 343 423 1.21e-16 75.5

Find 71 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTCTCTCTAAATAATTT+TGG 0.114275 6:+85846117 None:intergenic
TTCCATCTTCATCAAGATTT+TGG 0.131779 6:+85846571 None:intergenic
TACCACAATCTCTGGGAAAA+TGG 0.164083 6:+85846479 None:intergenic
CCAATGTATGAAGCGGATTT+TGG 0.170583 6:-85846003 MsG0680034332.01.T01:CDS
AAAACAATGTGGTATTTAAA+AGG 0.222238 6:-85846449 MsG0680034332.01.T01:CDS
CCAACATGGGTGACCACTTT+TGG 0.236794 6:-85845970 MsG0680034332.01.T01:CDS
ATCATTCATGAAGTTGAAAA+TGG 0.240127 6:+85846608 None:intergenic
CAAGCACGCTGTTTCAATAA+TGG 0.246941 6:-85846331 MsG0680034332.01.T01:CDS
CATCATGTCTAAACATTGTT+TGG 0.259672 6:+85845811 None:intergenic
GTTTATTTGAATGGCTATAA+AGG 0.308022 6:+85846695 None:intergenic
GGAAATGGAAATAGAGGATT+TGG 0.317777 6:-85846184 MsG0680034332.01.T01:CDS
AAGCACGCTGTTTCAATAAT+GGG 0.324962 6:-85846330 MsG0680034332.01.T01:CDS
ATTTGCATGAGTCACAAAAT+TGG 0.329140 6:-85846642 MsG0680034332.01.T01:CDS
TCTCTCTTTACCACAATCTC+TGG 0.338772 6:+85846471 None:intergenic
TCTTTCCATTGCAATTCATC+AGG 0.366379 6:+85846735 None:intergenic
TGCAAAACAGTTTATTTGAA+TGG 0.367290 6:+85846686 None:intergenic
TCACCCTTTAGTTTACTTGA+TGG 0.383738 6:-85846534 MsG0680034332.01.T01:CDS
TGAGAAGGAGTTGGTGATGA+AGG 0.383816 6:+85847050 None:intergenic
GAACATGGAAGATAATTATA+TGG 0.400217 6:-85845881 MsG0680034332.01.T01:CDS
TGCAGTGATTAAGTCTCTTA+AGG 0.405342 6:-85846412 MsG0680034332.01.T01:CDS
GTTGGCAAATAAGAAGGAAA+TGG 0.414374 6:-85846199 MsG0680034332.01.T01:CDS
TTTCAACTTCATGAATGATT+GGG 0.414945 6:-85846604 MsG0680034332.01.T01:CDS
GATTAAGTCTCTTAAGGAAA+TGG 0.420225 6:-85846406 MsG0680034332.01.T01:CDS
ACCACAATCTCTGGGAAAAT+GGG 0.431736 6:+85846480 None:intergenic
TAAGAAGGAAATGGAAATAG+AGG 0.434120 6:-85846190 MsG0680034332.01.T01:CDS
AGTTGGTGATGAAGGTTTGA+TGG 0.434934 6:+85847058 None:intergenic
AGCCAAAATCTTGATGAAGA+TGG 0.438456 6:-85846573 MsG0680034332.01.T01:CDS
TGCAATGGAAAGACATGGAT+TGG 0.442817 6:-85846725 MsG0680034332.01.T01:CDS
GGATAAAGTTTGAGGTGAGA+AGG 0.443809 6:+85847035 None:intergenic
GTCTATGTTGGCAAATAAGA+AGG 0.447511 6:-85846205 MsG0680034332.01.T01:CDS
CCAAAATCCGCTTCATACAT+TGG 0.450217 6:+85846003 None:intergenic
ATCAATGTTTAGCATGGTTG+TGG 0.450484 6:-85846292 MsG0680034332.01.T01:CDS
ACCTTGATCATTGCATTCAA+TGG 0.451625 6:+85846842 None:intergenic
TCCTCCATCAAGTAAACTAA+AGG 0.453406 6:+85846530 None:intergenic
AAAGTGTAGGGAACATACTT+TGG 0.455506 6:-85846233 MsG0680034332.01.T01:CDS
TTGGTCTGTCAAATAAAAGA+AGG 0.457762 6:-85846165 MsG0680034332.01.T01:CDS
CCATGCTAAACATTGATGTC+TGG 0.457782 6:+85846298 None:intergenic
TTAAGAGACTTAATCACTGC+AGG 0.463023 6:+85846414 None:intergenic
AAGTAATGACACATAGTTAC+GGG 0.468479 6:+85846986 None:intergenic
AAGAGAGTGGATAAAGTTTG+AGG 0.488221 6:+85847027 None:intergenic
GCAATTCATCAGGGAACAAA+GGG 0.500489 6:+85846745 None:intergenic
CTCTCTTTACCACAATCTCT+GGG 0.506292 6:+85846472 None:intergenic
CCTCCATCAAGTAAACTAAA+GGG 0.507177 6:+85846531 None:intergenic
TGGATACAAGAGATGGAGAT+GGG 0.510515 6:-85845918 MsG0680034332.01.T01:CDS
ACCATTGAATGCAATGATCA+AGG 0.512385 6:-85846843 MsG0680034332.01.T01:CDS
AGAAAGTAATTCTATTTCCA+TGG 0.521761 6:+85847088 None:intergenic
AGTTTGAGGTGAGAAGGAGT+TGG 0.524419 6:+85847041 None:intergenic
CCTTACAGAACAACCAAAAG+TGG 0.529496 6:+85845957 None:intergenic
AAAATGGGCAAATCCCTTTG+TGG 0.529925 6:+85846495 None:intergenic
CCAGACATCAATGTTTAGCA+TGG 0.535069 6:-85846298 MsG0680034332.01.T01:CDS
TGCAATTCATCAGGGAACAA+AGG 0.535516 6:+85846744 None:intergenic
CTTTCCATTGCAATTCATCA+GGG 0.536177 6:+85846736 None:intergenic
ATGGATACAAGAGATGGAGA+TGG 0.539300 6:-85845919 MsG0680034332.01.T01:CDS
AAAGTAATGACACATAGTTA+CGG 0.546947 6:+85846985 None:intergenic
AACATTGTTTGGATTAAGAG+AGG 0.547055 6:+85845822 None:intergenic
ATTATTTAGAGAGAAAGAGA+AGG 0.560275 6:-85846112 MsG0680034332.01.T01:CDS
CCCTTTAGTTTACTTGATGG+AGG 0.573653 6:-85846531 MsG0680034332.01.T01:CDS
CCAAAAGTGGTCACCCATGT+TGG 0.577438 6:+85845970 None:intergenic
AGTTACAACTTGTACACGTG+TGG 0.588043 6:+85846365 None:intergenic
TGGTCTGTCAAATAAAAGAA+GGG 0.590588 6:-85846164 MsG0680034332.01.T01:CDS
TTGGATGGGGAAAACCAACA+TGG 0.595660 6:-85845984 MsG0680034332.01.T01:CDS
TGTTCCCTGATGAATTGCAA+TGG 0.602006 6:-85846740 MsG0680034332.01.T01:CDS
TCGGTTTCCAATGTATGAAG+CGG 0.603496 6:-85846010 MsG0680034332.01.T01:CDS
GATTGAAGCAATTGTGAACA+TGG 0.613709 6:-85845896 MsG0680034332.01.T01:CDS
AGCACGCTGTTTCAATAATG+GGG 0.615102 6:-85846329 MsG0680034332.01.T01:CDS
ATGTTGTCTATGAAAGAGAG+TGG 0.633995 6:+85847014 None:intergenic
TGAATTGCAATGGAAAGACA+TGG 0.639854 6:-85846730 MsG0680034332.01.T01:CDS
GTTACAACTTGTACACGTGT+GGG 0.659137 6:+85846366 None:intergenic
TGGATGGGGAAAACCAACAT+GGG 0.660202 6:-85845983 MsG0680034332.01.T01:CDS
GTGTACAAGTTGTAACTGCG+TGG 0.696651 6:-85846359 MsG0680034332.01.T01:CDS
GGTAAAGAGAGAAAACAATG+TGG 0.722617 6:-85846460 MsG0680034332.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACAATGTGGTATTTAAA+AGG - Chr6:85846456-85846475 MsG0680034332.01.T01:CDS 20.0%
!!! AAACTTTTATTCTCAGAATA+TGG + Chr6:85846854-85846873 None:intergenic 20.0%
!!! AAGGAATATTGTAATTTTGA+TGG - Chr6:85846967-85846986 MsG0680034332.01.T01:CDS 20.0%
!!! TCTTTCTCTCTAAATAATTT+TGG + Chr6:85846791-85846810 None:intergenic 20.0%
! AAAGTAATGACACATAGTTA+CGG + Chr6:85845923-85845942 None:intergenic 25.0%
! ATCATTCATGAAGTTGAAAA+TGG + Chr6:85846300-85846319 None:intergenic 25.0%
! ATTATTTAGAGAGAAAGAGA+AGG - Chr6:85846793-85846812 MsG0680034332.01.T01:CDS 25.0%
! GAACATGGAAGATAATTATA+TGG - Chr6:85847024-85847043 MsG0680034332.01.T01:CDS 25.0%
! GTTTATTTGAATGGCTATAA+AGG + Chr6:85846213-85846232 None:intergenic 25.0%
! TGCAAAACAGTTTATTTGAA+TGG + Chr6:85846222-85846241 None:intergenic 25.0%
! TTTCAACTTCATGAATGATT+GGG - Chr6:85846301-85846320 MsG0680034332.01.T01:CDS 25.0%
!! TCTAAATACTATCATTTTGC+TGG - Chr6:85846020-85846039 MsG0680034332.01.T01:CDS 25.0%
!! TTTTCAACTTCATGAATGAT+TGG - Chr6:85846300-85846319 MsG0680034332.01.T01:CDS 25.0%
!!! GTTTGTTTACTTTTAGTAGT+TGG - Chr6:85846870-85846889 MsG0680034332.01.T01:CDS 25.0%
AACATTGTTTGGATTAAGAG+AGG + Chr6:85847086-85847105 None:intergenic 30.0%
AAGTAATGACACATAGTTAC+GGG + Chr6:85845922-85845941 None:intergenic 30.0%
ATTTGCATGAGTCACAAAAT+TGG - Chr6:85846263-85846282 MsG0680034332.01.T01:CDS 30.0%
GATTAAGTCTCTTAAGGAAA+TGG - Chr6:85846499-85846518 MsG0680034332.01.T01:CDS 30.0%
TAAGAAGGAAATGGAAATAG+AGG - Chr6:85846715-85846734 MsG0680034332.01.T01:CDS 30.0%
TGGTCTGTCAAATAAAAGAA+GGG - Chr6:85846741-85846760 MsG0680034332.01.T01:CDS 30.0%
TTGGTCTGTCAAATAAAAGA+AGG - Chr6:85846740-85846759 MsG0680034332.01.T01:CDS 30.0%
! AATACTATCATTTTGCTGGT+AGG - Chr6:85846024-85846043 MsG0680034332.01.T01:CDS 30.0%
! CAAATAAACTGTTTTGCATG+TGG - Chr6:85846224-85846243 MsG0680034332.01.T01:CDS 30.0%
! CATTGCATGAAAAAAGTGTA+GGG - Chr6:85846660-85846679 MsG0680034332.01.T01:CDS 30.0%
! TTCCATCTTCATCAAGATTT+TGG + Chr6:85846337-85846356 None:intergenic 30.0%
!! ATTTTGATGGATACAAGAGA+TGG - Chr6:85846980-85846999 MsG0680034332.01.T01:CDS 30.0%
!! TTACTTTTAGTAGTTGGTGT+CGG - Chr6:85846876-85846895 MsG0680034332.01.T01:CDS 30.0%
!!! GTTGTGCTATTTTGGAATTT+TGG + Chr6:85845974-85845993 None:intergenic 30.0%
!!! TGTGTTATTTTTAGTCACAG+AGG - Chr6:85846085-85846104 MsG0680034332.01.T01:CDS 30.0%
!!! TTTTCGAAGTTGTGCTATTT+TGG + Chr6:85845982-85846001 None:intergenic 30.0%
AAAGTGTAGGGAACATACTT+TGG - Chr6:85846672-85846691 MsG0680034332.01.T01:CDS 35.0%
AAGAGAGTGGATAAAGTTTG+AGG + Chr6:85845881-85845900 None:intergenic 35.0%
ACCATTGAATGCAATGATCA+AGG - Chr6:85846062-85846081 MsG0680034332.01.T01:CDS 35.0%
ACCTTGATCATTGCATTCAA+TGG + Chr6:85846066-85846085 None:intergenic 35.0%
AGCCAAAATCTTGATGAAGA+TGG - Chr6:85846332-85846351 MsG0680034332.01.T01:CDS 35.0%
ATCAATGTTTAGCATGGTTG+TGG - Chr6:85846613-85846632 MsG0680034332.01.T01:CDS 35.0%
ATGTTGTCTATGAAAGAGAG+TGG + Chr6:85845894-85845913 None:intergenic 35.0%
CCTCCATCAAGTAAACTAAA+GGG + Chr6:85846377-85846396 None:intergenic 35.0%
CTTTCCATTGCAATTCATCA+GGG + Chr6:85846172-85846191 None:intergenic 35.0%
GATTGAAGCAATTGTGAACA+TGG - Chr6:85847009-85847028 MsG0680034332.01.T01:CDS 35.0%
GGAAATGGAAATAGAGGATT+TGG - Chr6:85846721-85846740 MsG0680034332.01.T01:CDS 35.0%
GGTAAAGAGAGAAAACAATG+TGG - Chr6:85846445-85846464 MsG0680034332.01.T01:CDS 35.0%
GTCTATGTTGGCAAATAAGA+AGG - Chr6:85846700-85846719 MsG0680034332.01.T01:CDS 35.0%
GTTGGCAAATAAGAAGGAAA+TGG - Chr6:85846706-85846725 MsG0680034332.01.T01:CDS 35.0%
TCCTCCATCAAGTAAACTAA+AGG + Chr6:85846378-85846397 None:intergenic 35.0%
TCTTTCCATTGCAATTCATC+AGG + Chr6:85846173-85846192 None:intergenic 35.0%
TGAATTGCAATGGAAAGACA+TGG - Chr6:85846175-85846194 MsG0680034332.01.T01:CDS 35.0%
TGCAGTGATTAAGTCTCTTA+AGG - Chr6:85846493-85846512 MsG0680034332.01.T01:CDS 35.0%
TTAAGAGACTTAATCACTGC+AGG + Chr6:85846494-85846513 None:intergenic 35.0%
! AAGCACGCTGTTTCAATAAT+GGG - Chr6:85846575-85846594 MsG0680034332.01.T01:CDS 35.0%
! ACAGATTTTCAGTGGGATTT+TGG + Chr6:85846136-85846155 None:intergenic 35.0%
! ATAAACTGTTTTGCATGTGG+AGG - Chr6:85846227-85846246 MsG0680034332.01.T01:CDS 35.0%
! CCATTGCATGAAAAAAGTGT+AGG - Chr6:85846659-85846678 MsG0680034332.01.T01:CDS 35.0%
! TCACCCTTTAGTTTACTTGA+TGG - Chr6:85846371-85846390 MsG0680034332.01.T01:CDS 35.0%
! TTTTGGTCTCTACTCTTGTT+TGG + Chr6:85845957-85845976 None:intergenic 35.0%
!!! ACACTTTTTTCATGCAATGG+AGG + Chr6:85846659-85846678 None:intergenic 35.0%
!!! ACTTTGGTTTTCGTCTATGT+TGG - Chr6:85846688-85846707 MsG0680034332.01.T01:CDS 35.0%
!!! ATCAAGATTTTGGCTGATCA+TGG + Chr6:85846327-85846346 None:intergenic 35.0%
!!! CCTACACTTTTTTCATGCAA+TGG + Chr6:85846662-85846681 None:intergenic 35.0%
AAAATGGGCAAATCCCTTTG+TGG + Chr6:85846413-85846432 None:intergenic 40.0%
AGTTACAACTTGTACACGTG+TGG + Chr6:85846543-85846562 None:intergenic 40.0%
ATGGATACAAGAGATGGAGA+TGG - Chr6:85846986-85847005 MsG0680034332.01.T01:CDS 40.0%
CCAAAATCCGCTTCATACAT+TGG + Chr6:85846905-85846924 None:intergenic 40.0%
CCAGACATCAATGTTTAGCA+TGG - Chr6:85846607-85846626 MsG0680034332.01.T01:CDS 40.0%
CCATGCTAAACATTGATGTC+TGG + Chr6:85846610-85846629 None:intergenic 40.0%
CCTTACAGAACAACCAAAAG+TGG + Chr6:85846951-85846970 None:intergenic 40.0%
CTCTCTTTACCACAATCTCT+GGG + Chr6:85846436-85846455 None:intergenic 40.0%
GCAATTCATCAGGGAACAAA+GGG + Chr6:85846163-85846182 None:intergenic 40.0%
GTTACAACTTGTACACGTGT+GGG + Chr6:85846542-85846561 None:intergenic 40.0%
TCGGTTTCCAATGTATGAAG+CGG - Chr6:85846895-85846914 MsG0680034332.01.T01:CDS 40.0%
TCTCTCTTTACCACAATCTC+TGG + Chr6:85846437-85846456 None:intergenic 40.0%
TGCAATGGAAAGACATGGAT+TGG - Chr6:85846180-85846199 MsG0680034332.01.T01:CDS 40.0%
TGCAATTCATCAGGGAACAA+AGG + Chr6:85846164-85846183 None:intergenic 40.0%
TGGATACAAGAGATGGAGAT+GGG - Chr6:85846987-85847006 MsG0680034332.01.T01:CDS 40.0%
TGTTCCCTGATGAATTGCAA+TGG - Chr6:85846165-85846184 MsG0680034332.01.T01:CDS 40.0%
! ACCACAATCTCTGGGAAAAT+GGG + Chr6:85846428-85846447 None:intergenic 40.0%
! AGCACGCTGTTTCAATAATG+GGG - Chr6:85846576-85846595 MsG0680034332.01.T01:CDS 40.0%
! AGGGTTCAACAGATTTTCAG+TGG + Chr6:85846144-85846163 None:intergenic 40.0%
! CAAGCACGCTGTTTCAATAA+TGG - Chr6:85846574-85846593 MsG0680034332.01.T01:CDS 40.0%
! CCCTTTAGTTTACTTGATGG+AGG - Chr6:85846374-85846393 MsG0680034332.01.T01:CDS 40.0%
! GGATAAAGTTTGAGGTGAGA+AGG + Chr6:85845873-85845892 None:intergenic 40.0%
! GGGTTCAACAGATTTTCAGT+GGG + Chr6:85846143-85846162 None:intergenic 40.0%
! TACCACAATCTCTGGGAAAA+TGG + Chr6:85846429-85846448 None:intergenic 40.0%
!! AGTTGGTGATGAAGGTTTGA+TGG + Chr6:85845850-85845869 None:intergenic 40.0%
!! CCAATGTATGAAGCGGATTT+TGG - Chr6:85846902-85846921 MsG0680034332.01.T01:CDS 40.0%
!! CCACTTTTGGTTGTTCTGTA+AGG - Chr6:85846948-85846967 MsG0680034332.01.T01:CDS 40.0%
!! GTATGAAGCGGATTTTGGAT+GGG - Chr6:85846907-85846926 MsG0680034332.01.T01:CDS 40.0%
!! TATGAAGCGGATTTTGGATG+GGG - Chr6:85846908-85846927 MsG0680034332.01.T01:CDS 40.0%
!! TGTATGAAGCGGATTTTGGA+TGG - Chr6:85846906-85846925 MsG0680034332.01.T01:CDS 40.0%
!!! AGCGTCGATTTTTCCACAAA+GGG - Chr6:85846397-85846416 MsG0680034332.01.T01:CDS 40.0%
GTGTACAAGTTGTAACTGCG+TGG - Chr6:85846546-85846565 MsG0680034332.01.T01:CDS 45.0%
TGGATGGGGAAAACCAACAT+GGG - Chr6:85846922-85846941 MsG0680034332.01.T01:CDS 45.0%
TTGGATGGGGAAAACCAACA+TGG - Chr6:85846921-85846940 MsG0680034332.01.T01:CDS 45.0%
! AGTTTGAGGTGAGAAGGAGT+TGG + Chr6:85845867-85845886 None:intergenic 45.0%
! CTGTTTTGCATGTGGAGGAA+TGG - Chr6:85846232-85846251 MsG0680034332.01.T01:CDS 45.0%
!! TGAGAAGGAGTTGGTGATGA+AGG + Chr6:85845858-85845877 None:intergenic 45.0%
!!! GAGCGTCGATTTTTCCACAA+AGG - Chr6:85846396-85846415 MsG0680034332.01.T01:CDS 45.0%
CCAAAAGTGGTCACCCATGT+TGG + Chr6:85846938-85846957 None:intergenic 50.0%
! CCAACATGGGTGACCACTTT+TGG - Chr6:85846935-85846954 MsG0680034332.01.T01:CDS 50.0%
! GCCCATTTTCCCAGAGATTG+TGG - Chr6:85846424-85846443 MsG0680034332.01.T01:CDS 50.0%
Chromosome Type Strat End Strand Name
Chr6 gene 85845819 85847108 85845819 ID=MsG0680034332.01;Name=MsG0680034332.01
Chr6 mRNA 85845819 85847108 85845819 ID=MsG0680034332.01.T01;Parent=MsG0680034332.01;Name=MsG0680034332.01.T01;_AED=0.02;_eAED=0.02;_QI=0|-1|0|1|-1|1|1|0|429
Chr6 exon 85845819 85847108 85845819 ID=MsG0680034332.01.T01:exon:7200;Parent=MsG0680034332.01.T01
Chr6 CDS 85845819 85847108 85845819 ID=MsG0680034332.01.T01:cds;Parent=MsG0680034332.01.T01
Chr6 mRNA 85845819 85846223 85845819 ID=MsG0680034332.01.T02;Parent=MsG0680034332.01;Name=MsG0680034332.01.T02;_AED=0.35;_eAED=0.35;_QI=0|-1|0|1|-1|0|1|0|134
Chr6 exon 85845819 85846223 85845819 ID=MsG0680034332.01.T02:exon:7201;Parent=MsG0680034332.01.T02
Chr6 CDS 85845819 85846223 85845819 ID=MsG0680034332.01.T02:cds;Parent=MsG0680034332.01.T02
Gene Sequence

>MsG0680034332.01.T01

ATGGAAATAGAATTACTTTCTAGAGAAACCATCAAACCTTCATCACCAACTCCTTCTCACCTCAAACTTTATCCACTCTCTTTCATAGACAACATTGTTTCCCGTAACTATGTGTCATTACTTTACTTTTACAAGCCAAACAAGAGTAGAGACCAAAATTCCAAAATAGCACAACTTCGAAAATCTTTATCTCAACTTTTATCTAAATACTATCATTTTGCTGGTAGGATTAAAGATAAAATTACCATTGAATGCAATGATCAAGGTGTGTTATTTTTAGTCACAGAGGTAAAAAACAAACTTTCAGATATTCTCCAAAATCCCACTGAAAATCTGTTGAACCCTTTGTTCCCTGATGAATTGCAATGGAAAGACATGGATTGGAGTGCAACCTTTATAGCCATTCAAATAAACTGTTTTGCATGTGGAGGAATGGCAATAAGTATTTGCATGAGTCACAAAATTGGTGATGCTTCAACCATTTTCAACTTCATGAATGATTGGGCCATGATCAGCCAAAATCTTGATGAAGATGGAAAAGAGTTATTAGTATCACCCTTTAGTTTACTTGATGGAGGAGCGTCGATTTTTCCACAAAGGGATTTGCCCATTTTCCCAGAGATTGTGGTAAAGAGAGAAAACAATGTGGTATTTAAAAGGTTTGTTTTCAATCCTGCAGTGATTAAGTCTCTTAAGGAAATGGTAACTTCTATGCATTCTCCCACACGTGTACAAGTTGTAACTGCGTGGATTTACAAGCACGCTGTTTCAATAATGGGGTTAAATTTCCAGACATCAATGTTTAGCATGGTTGTGGATCTTCGCAGAAGAATGATTCCTCCATTGCATGAAAAAAGTGTAGGGAACATACTTTGGTTTTCGTCTATGTTGGCAAATAAGAAGGAAATGGAAATAGAGGATTTGGTCTGTCAAATAAAAGAAGGGTTATCTGAGTGTTGTGATGTTTATCCAAAATTATTTAGAGAGAAAGAGAAGGATAAGATATCTGAGTGCTTGAAGCAAGTTACACAGCCATATTCTGAGAATAAAAGTTTGTTTACTTTTAGTAGTTGGTGTCGGTTTCCAATGTATGAAGCGGATTTTGGATGGGGAAAACCAACATGGGTGACCACTTTTGGTTGTTCTGTAAGGAATATTGTAATTTTGATGGATACAAGAGATGGAGATGGGATTGAAGCAATTGTGAACATGGAAGATAATTATATGGCTAAGTTCGAACGTGATTTTGAGCTTCTTCGATATGCCTCTCTTAATCCAAACAATGTTTAG

>MsG0680034332.01.T02

ATGTTGGCAAATAAGAAGGAAATGGAAATAGAGGATTTGGTCTGTCAAATAAAAGAAGGGTTATCTGAGTGTTGTGATGTTTATCCAAAATTATTTAGAGAGAAAGAGAAGGATAAGATATCTGAGTGCTTGAAGCAAGTTACACAGCCATATTCTGAGAATAAAAGTTTGTTTACTTTTAGTAGTTGGTGTCGGTTTCCAATGTATGAAGCGGATTTTGGATGGGGAAAACCAACATGGGTGACCACTTTTGGTTGTTCTGTAAGGAATATTGTAATTTTGATGGATACAAGAGATGGAGATGGGATTGAAGCAATTGTGAACATGGAAGATAATTATATGGCTAAGTTCGAACGTGATTTTGAGCTTCTTCGATATGCCTCTCTTAATCCAAACAATGTTTAG

Protein sequence

>MsG0680034332.01.T01

MEIELLSRETIKPSSPTPSHLKLYPLSFIDNIVSRNYVSLLYFYKPNKSRDQNSKIAQLRKSLSQLLSKYYHFAGRIKDKITIECNDQGVLFLVTEVKNKLSDILQNPTENLLNPLFPDELQWKDMDWSATFIAIQINCFACGGMAISICMSHKIGDASTIFNFMNDWAMISQNLDEDGKELLVSPFSLLDGGASIFPQRDLPIFPEIVVKRENNVVFKRFVFNPAVIKSLKEMVTSMHSPTRVQVVTAWIYKHAVSIMGLNFQTSMFSMVVDLRRRMIPPLHEKSVGNILWFSSMLANKKEMEIEDLVCQIKEGLSECCDVYPKLFREKEKDKISECLKQVTQPYSENKSLFTFSSWCRFPMYEADFGWGKPTWVTTFGCSVRNIVILMDTRDGDGIEAIVNMEDNYMAKFERDFELLRYASLNPNNV*

>MsG0680034332.01.T02

MLANKKEMEIEDLVCQIKEGLSECCDVYPKLFREKEKDKISECLKQVTQPYSENKSLFTFSSWCRFPMYEADFGWGKPTWVTTFGCSVRNIVILMDTRDGDGIEAIVNMEDNYMAKFERDFELLRYASLNPNNV*