Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0680034332.01.T01 | XP_003616845.1 | 84.919 | 431 | 63 | 1 | 1 | 429 | 1 | 431 | 0 | 774 |
MsG0680034332.01.T02 | XP_003616845.1 | 85.821 | 134 | 19 | 0 | 1 | 134 | 298 | 431 | 7.22E-80 | 252 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0680034332.01.T01 | A0A2P1GIW7 | 34.023 | 435 | 240 | 12 | 2 | 416 | 4 | 411 | 3.45E-73 | 238 |
MsG0680034332.01.T02 | A0A2K8FQU5 | 44.66 | 103 | 50 | 2 | 30 | 130 | 322 | 419 | 1.05E-22 | 95.1 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0680034332.01.T01 | G7K7H3 | 84.919 | 431 | 63 | 1 | 1 | 429 | 1 | 431 | 0.0 | 774 |
MsG0680034332.01.T02 | G7K7H3 | 85.821 | 134 | 19 | 0 | 1 | 134 | 298 | 431 | 3.45e-80 | 252 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0680034310.01 | MsG0680034332.01 | 0.804623 | 1.976971e-49 | 1.024160e-46 |
MsG0680034312.01 | MsG0680034332.01 | 0.817379 | 3.399325e-52 | 2.471662e-49 |
MsG0680034330.01 | MsG0680034332.01 | 0.800844 | 1.190999e-48 | 5.603177e-46 |
MsG0680034332.01 | MsG0680034354.01 | 0.829103 | 6.206563e-55 | 6.289930e-52 |
MsG0680034332.01 | MsG0680034356.01 | 0.807048 | 6.113611e-50 | 3.370812e-47 |
MsG0680034332.01 | MsG0680034357.01 | 0.811059 | 8.460570e-51 | 5.185217e-48 |
MsG0680034332.01 | MsG0680034366.01 | 0.811518 | 6.725269e-51 | 4.171954e-48 |
MsG0680034332.01 | MsG0680034367.01 | 0.818460 | 1.937582e-52 | 1.451372e-49 |
MsG0680034332.01 | MsG0680034369.01 | 0.827524 | 1.491966e-54 | 1.443892e-51 |
MsG0680034332.01 | MsG0680034418.01 | 0.813451 | 2.542623e-51 | 1.661131e-48 |
MsG0480019024.01 | MsG0680034332.01 | 0.812491 | 4.127942e-51 | 2.628393e-48 |
MsG0280009232.01 | MsG0680034332.01 | 0.824358 | 8.428275e-54 | 7.448122e-51 |
PPI
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0680034332.01.T01 | MTR_5g084870 | 84.919 | 431 | 63 | 1 | 1 | 429 | 1 | 431 | 0.0 | 774 |
MsG0680034332.01.T01 | MTR_5g084850 | 80.415 | 434 | 76 | 4 | 1 | 429 | 1 | 430 | 0.0 | 721 |
MsG0680034332.01.T01 | MTR_8g079970 | 77.346 | 437 | 91 | 3 | 1 | 429 | 1 | 437 | 0.0 | 702 |
MsG0680034332.01.T01 | MTR_8g079950 | 74.142 | 437 | 105 | 4 | 1 | 429 | 1 | 437 | 0.0 | 676 |
MsG0680034332.01.T01 | MTR_5g084900 | 76.862 | 376 | 58 | 3 | 56 | 429 | 6 | 354 | 0.0 | 590 |
MsG0680034332.01.T01 | MTR_8g079980 | 58.864 | 440 | 166 | 5 | 1 | 429 | 1 | 436 | 0.0 | 515 |
MsG0680034332.01.T01 | MTR_3g086020 | 37.705 | 427 | 240 | 12 | 1 | 419 | 3 | 411 | 4.86e-88 | 274 |
MsG0680034332.01.T01 | MTR_2g007880 | 33.846 | 455 | 256 | 11 | 1 | 426 | 15 | 453 | 4.57e-76 | 244 |
MsG0680034332.01.T01 | MTR_8g467580 | 31.416 | 452 | 273 | 13 | 1 | 427 | 1 | 440 | 4.51e-58 | 197 |
MsG0680034332.01.T01 | MTR_8g467590 | 30.396 | 454 | 275 | 15 | 1 | 427 | 1 | 440 | 4.89e-55 | 189 |
MsG0680034332.01.T01 | MTR_1g094790 | 30.472 | 466 | 262 | 16 | 1 | 426 | 1 | 444 | 1.34e-51 | 180 |
MsG0680034332.01.T01 | MTR_7g110540 | 66.667 | 123 | 23 | 1 | 1 | 123 | 1 | 105 | 4.41e-48 | 165 |
MsG0680034332.01.T01 | MTR_7g110540 | 46.053 | 152 | 47 | 4 | 238 | 389 | 104 | 220 | 1.83e-36 | 134 |
MsG0680034332.01.T01 | MTR_7g085990 | 25.478 | 471 | 275 | 19 | 3 | 416 | 2 | 453 | 9.09e-27 | 112 |
MsG0680034332.01.T01 | MTR_4g127650 | 23.451 | 452 | 301 | 13 | 2 | 416 | 9 | 452 | 3.67e-26 | 110 |
MsG0680034332.01.T01 | MTR_7g085930 | 24.788 | 472 | 283 | 17 | 3 | 417 | 6 | 462 | 1.39e-25 | 108 |
MsG0680034332.01.T01 | MTR_8g096530 | 24.706 | 425 | 270 | 16 | 23 | 418 | 25 | 428 | 2.19e-25 | 108 |
MsG0680034332.01.T01 | MTR_4g007540 | 21.513 | 423 | 281 | 17 | 27 | 416 | 25 | 429 | 6.35e-25 | 106 |
MsG0680034332.01.T01 | MTR_3g026950 | 24.263 | 441 | 273 | 16 | 3 | 397 | 2 | 427 | 1.20e-24 | 105 |
MsG0680034332.01.T01 | MTR_2g105330 | 22.616 | 451 | 292 | 16 | 1 | 416 | 1 | 429 | 1.29e-24 | 105 |
MsG0680034332.01.T01 | MTR_2g064495 | 22.395 | 451 | 293 | 16 | 1 | 416 | 1 | 429 | 1.42e-24 | 105 |
MsG0680034332.01.T01 | MTR_5g076700 | 25.362 | 414 | 240 | 18 | 9 | 385 | 16 | 397 | 6.18e-24 | 103 |
MsG0680034332.01.T01 | MTR_4g013050 | 24.318 | 440 | 256 | 15 | 10 | 416 | 11 | 406 | 2.36e-23 | 101 |
MsG0680034332.01.T01 | MTR_3g049150 | 24.554 | 448 | 296 | 14 | 10 | 424 | 9 | 447 | 6.58e-23 | 100 |
MsG0680034332.01.T01 | MTR_5g084920 | 81.034 | 58 | 10 | 1 | 1 | 58 | 1 | 57 | 9.19e-23 | 91.3 |
MsG0680034332.01.T01 | MTR_1g040215 | 23.881 | 402 | 257 | 15 | 2 | 375 | 8 | 388 | 1.18e-22 | 100 |
MsG0680034332.01.T01 | MTR_5g026320 | 24.009 | 429 | 274 | 13 | 2 | 397 | 17 | 426 | 1.63e-22 | 99.8 |
MsG0680034332.01.T01 | MTR_3g098980 | 22.273 | 440 | 295 | 16 | 2 | 414 | 11 | 430 | 2.51e-22 | 99.0 |
MsG0680034332.01.T01 | MTR_8g075610 | 22.556 | 399 | 269 | 16 | 41 | 413 | 30 | 414 | 2.58e-22 | 99.0 |
MsG0680034332.01.T01 | MTR_4g055170 | 25.495 | 455 | 276 | 18 | 11 | 420 | 20 | 456 | 6.46e-21 | 95.1 |
MsG0680034332.01.T01 | MTR_4g094842 | 26.869 | 428 | 256 | 18 | 3 | 390 | 4 | 414 | 1.00e-19 | 91.3 |
MsG0680034332.01.T01 | MTR_4g094838 | 24.828 | 435 | 260 | 14 | 17 | 419 | 29 | 428 | 3.43e-19 | 89.7 |
MsG0680034332.01.T01 | MTR_3g112180 | 22.727 | 440 | 275 | 14 | 10 | 413 | 19 | 429 | 2.38e-18 | 87.4 |
MsG0680034332.01.T01 | MTR_1g040175 | 23.325 | 403 | 244 | 16 | 9 | 375 | 15 | 388 | 2.98e-18 | 87.0 |
MsG0680034332.01.T01 | MTR_1g053315 | 23.690 | 439 | 271 | 21 | 1 | 396 | 16 | 433 | 4.16e-18 | 86.7 |
MsG0680034332.01.T01 | MTR_7g086000 | 22.756 | 479 | 300 | 17 | 1 | 424 | 2 | 465 | 4.60e-18 | 86.7 |
MsG0680034332.01.T01 | MTR_7g114560 | 29.885 | 174 | 110 | 5 | 9 | 174 | 16 | 185 | 9.91e-18 | 85.5 |
MsG0680034332.01.T01 | MTR_7g027175 | 22.488 | 418 | 274 | 15 | 1 | 390 | 13 | 408 | 2.68e-17 | 84.0 |
MsG0680034332.01.T01 | MTR_7g014200 | 24.074 | 432 | 271 | 14 | 16 | 397 | 20 | 444 | 3.40e-17 | 84.0 |
MsG0680034332.01.T01 | MTR_5g090830 | 24.048 | 420 | 256 | 16 | 3 | 375 | 10 | 413 | 1.51e-16 | 82.0 |
MsG0680034332.01.T01 | MTR_1g040315 | 27.869 | 183 | 122 | 5 | 2 | 177 | 8 | 187 | 1.74e-16 | 81.3 |
MsG0680034332.01.T01 | MTR_4g022670 | 26.698 | 427 | 246 | 21 | 3 | 387 | 4 | 405 | 1.88e-16 | 81.3 |
MsG0680034332.01.T01 | MTR_7g014620 | 24.823 | 423 | 257 | 16 | 24 | 403 | 13 | 417 | 2.74e-16 | 80.9 |
MsG0680034332.01.T01 | MTR_4g094835 | 25.849 | 383 | 226 | 18 | 51 | 395 | 57 | 419 | 3.75e-16 | 80.5 |
MsG0680034332.01.T01 | MTR_7g114550 | 29.944 | 177 | 106 | 6 | 9 | 174 | 16 | 185 | 4.00e-16 | 80.5 |
MsG0680034332.01.T01 | MTR_7g114490 | 22.943 | 401 | 249 | 17 | 9 | 375 | 16 | 390 | 5.98e-16 | 80.1 |
MsG0680034332.01.T01 | MTR_7g114520 | 30.769 | 182 | 105 | 8 | 9 | 177 | 17 | 190 | 1.48e-15 | 79.0 |
MsG0680034332.01.T01 | MTR_5g090810 | 23.095 | 420 | 260 | 16 | 3 | 375 | 10 | 413 | 1.83e-15 | 78.6 |
MsG0680034332.01.T01 | MTR_1g040320 | 31.667 | 180 | 105 | 6 | 9 | 177 | 15 | 187 | 3.42e-15 | 77.4 |
MsG0680034332.01.T01 | MTR_8g041770 | 25.316 | 395 | 246 | 16 | 17 | 385 | 31 | 402 | 5.80e-15 | 77.0 |
MsG0680034332.01.T01 | MTR_3g100150 | 26.829 | 164 | 112 | 4 | 10 | 169 | 18 | 177 | 2.14e-14 | 75.5 |
MsG0680034332.01.T01 | MTR_1g081660 | 22.321 | 448 | 295 | 16 | 9 | 423 | 24 | 451 | 2.16e-14 | 75.1 |
MsG0680034332.01.T01 | MTR_2g036780 | 27.108 | 166 | 113 | 4 | 10 | 171 | 19 | 180 | 2.28e-14 | 75.1 |
MsG0680034332.01.T01 | MTR_1g011660 | 28.205 | 156 | 105 | 4 | 22 | 172 | 23 | 176 | 7.17e-14 | 73.6 |
MsG0680034332.01.T01 | MTR_3g101900 | 24.161 | 447 | 310 | 16 | 3 | 424 | 7 | 449 | 7.52e-14 | 73.6 |
MsG0680034332.01.T01 | MTR_3g071320 | 22.697 | 445 | 281 | 19 | 11 | 415 | 13 | 434 | 1.25e-13 | 72.8 |
MsG0680034332.01.T01 | MTR_3g102010 | 23.851 | 457 | 307 | 18 | 3 | 426 | 7 | 455 | 3.50e-13 | 71.6 |
MsG0680034332.01.T01 | MTR_1g035890 | 26.786 | 168 | 113 | 5 | 10 | 171 | 18 | 181 | 6.00e-13 | 70.5 |
MsG0680034332.01.T01 | MTR_5g090880 | 22.652 | 362 | 232 | 12 | 52 | 373 | 60 | 413 | 7.17e-12 | 67.4 |
MsG0680034332.01.T01 | MTR_4g094832 | 25.444 | 338 | 212 | 14 | 82 | 395 | 82 | 403 | 2.24e-11 | 65.9 |
MsG0680034332.01.T01 | MTR_7g110610 | 26.486 | 185 | 118 | 8 | 1 | 177 | 3 | 177 | 4.46e-11 | 64.7 |
MsG0680034332.01.T01 | MTR_8g039950 | 33.333 | 120 | 66 | 5 | 9 | 121 | 15 | 127 | 7.04e-11 | 60.1 |
MsG0680034332.01.T02 | MTR_5g084870 | 85.821 | 134 | 19 | 0 | 1 | 134 | 298 | 431 | 8.75e-84 | 252 |
MsG0680034332.01.T02 | MTR_5g084850 | 76.471 | 136 | 30 | 1 | 1 | 134 | 295 | 430 | 4.03e-74 | 227 |
MsG0680034332.01.T02 | MTR_5g084900 | 76.866 | 134 | 23 | 1 | 1 | 134 | 229 | 354 | 4.98e-72 | 219 |
MsG0680034332.01.T02 | MTR_8g079970 | 74.453 | 137 | 32 | 1 | 1 | 134 | 301 | 437 | 1.02e-69 | 216 |
MsG0680034332.01.T02 | MTR_8g079950 | 70.073 | 137 | 38 | 1 | 1 | 134 | 301 | 437 | 3.49e-66 | 207 |
MsG0680034332.01.T02 | MTR_8g079980 | 64.122 | 131 | 42 | 2 | 9 | 134 | 306 | 436 | 8.32e-54 | 175 |
MsG0680034332.01.T02 | MTR_2g007880 | 45.192 | 104 | 54 | 2 | 30 | 131 | 351 | 453 | 2.53e-22 | 91.3 |
MsG0680034332.01.T02 | MTR_3g086020 | 52.941 | 68 | 32 | 0 | 57 | 124 | 344 | 411 | 6.41e-21 | 87.0 |
MsG0680034332.01.T02 | MTR_8g467580 | 40.426 | 94 | 51 | 2 | 42 | 132 | 349 | 440 | 1.20e-15 | 72.4 |
MsG0680034332.01.T02 | MTR_8g467590 | 41.667 | 84 | 44 | 2 | 52 | 132 | 359 | 440 | 7.02e-15 | 70.1 |
MsG0680034332.01.T02 | MTR_7g110540 | 40.000 | 85 | 50 | 1 | 10 | 94 | 137 | 220 | 3.50e-13 | 64.7 |
MsG0680034332.01.T02 | MTR_1g094790 | 40.789 | 76 | 40 | 2 | 59 | 131 | 371 | 444 | 3.28e-11 | 59.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0680034332.01.T01 | AT3G26040 | 35.214 | 443 | 261 | 13 | 1 | 427 | 1 | 433 | 5.89e-81 | 256 |
MsG0680034332.01.T01 | AT1G24430 | 33.790 | 438 | 268 | 9 | 1 | 427 | 3 | 429 | 2.62e-74 | 239 |
MsG0680034332.01.T01 | AT4G15390 | 32.207 | 444 | 278 | 12 | 1 | 427 | 6 | 443 | 8.09e-67 | 220 |
MsG0680034332.01.T01 | AT4G15390 | 32.207 | 444 | 278 | 12 | 1 | 427 | 6 | 443 | 8.09e-67 | 220 |
MsG0680034332.01.T01 | AT1G24420 | 35.714 | 448 | 244 | 17 | 3 | 426 | 5 | 432 | 1.72e-66 | 219 |
MsG0680034332.01.T01 | AT1G24420 | 35.714 | 448 | 244 | 17 | 3 | 426 | 5 | 432 | 1.72e-66 | 219 |
MsG0680034332.01.T01 | AT3G30280 | 31.920 | 448 | 273 | 15 | 1 | 427 | 4 | 440 | 2.91e-65 | 216 |
MsG0680034332.01.T01 | AT5G23970 | 32.816 | 451 | 253 | 16 | 1 | 427 | 1 | 425 | 9.79e-64 | 211 |
MsG0680034332.01.T01 | AT5G47950 | 31.473 | 448 | 258 | 14 | 1 | 427 | 4 | 423 | 1.56e-58 | 197 |
MsG0680034332.01.T01 | AT5G47980 | 32.962 | 449 | 266 | 17 | 1 | 426 | 3 | 439 | 8.41e-57 | 193 |
MsG0680034332.01.T01 | AT4G15400 | 28.384 | 458 | 265 | 17 | 2 | 426 | 4 | 431 | 8.21e-40 | 148 |
MsG0680034332.01.T01 | AT5G48930 | 23.714 | 447 | 289 | 19 | 1 | 414 | 1 | 428 | 4.32e-28 | 115 |
MsG0680034332.01.T01 | AT2G19070 | 25.670 | 448 | 281 | 18 | 10 | 416 | 11 | 447 | 5.53e-28 | 115 |
MsG0680034332.01.T01 | AT3G48720 | 24.485 | 437 | 272 | 18 | 9 | 413 | 15 | 425 | 3.61e-26 | 110 |
MsG0680034332.01.T01 | AT5G63560 | 24.476 | 429 | 274 | 17 | 11 | 413 | 17 | 421 | 5.29e-26 | 109 |
MsG0680034332.01.T01 | AT5G41040 | 25.445 | 393 | 240 | 14 | 11 | 373 | 25 | 394 | 6.47e-26 | 109 |
MsG0680034332.01.T01 | AT5G41040 | 25.445 | 393 | 240 | 14 | 11 | 373 | 41 | 410 | 6.70e-26 | 109 |
MsG0680034332.01.T01 | AT5G17540 | 22.374 | 438 | 296 | 16 | 9 | 417 | 15 | 437 | 3.68e-21 | 95.9 |
MsG0680034332.01.T01 | AT1G31490 | 23.834 | 386 | 255 | 11 | 11 | 373 | 14 | 383 | 3.15e-20 | 92.8 |
MsG0680034332.01.T01 | AT5G67150 | 25.652 | 460 | 283 | 20 | 2 | 421 | 4 | 444 | 5.94e-20 | 92.0 |
MsG0680034332.01.T01 | AT1G65450 | 24.318 | 440 | 281 | 16 | 11 | 417 | 26 | 446 | 7.72e-20 | 91.7 |
MsG0680034332.01.T01 | AT5G57840 | 23.415 | 410 | 262 | 14 | 1 | 375 | 1 | 393 | 1.46e-19 | 90.9 |
MsG0680034332.01.T01 | AT4G31910 | 24.641 | 418 | 249 | 14 | 2 | 371 | 8 | 407 | 1.38e-15 | 79.0 |
MsG0680034332.01.T01 | AT1G78990 | 24.784 | 347 | 215 | 14 | 59 | 375 | 67 | 397 | 1.54e-15 | 79.0 |
MsG0680034332.01.T01 | AT5G38130 | 25.278 | 360 | 229 | 15 | 41 | 373 | 64 | 410 | 3.17e-14 | 74.7 |
MsG0680034332.01.T01 | AT2G25150 | 21.903 | 452 | 296 | 18 | 9 | 420 | 19 | 453 | 3.49e-14 | 74.7 |
MsG0680034332.01.T01 | AT1G32910 | 24.332 | 374 | 228 | 14 | 38 | 375 | 46 | 400 | 5.31e-14 | 73.9 |
MsG0680034332.01.T01 | AT5G07860 | 23.400 | 453 | 298 | 17 | 2 | 419 | 7 | 445 | 1.11e-13 | 73.2 |
MsG0680034332.01.T01 | AT1G27620 | 21.578 | 431 | 285 | 15 | 11 | 413 | 17 | 422 | 1.16e-13 | 72.8 |
MsG0680034332.01.T01 | AT5G67160 | 25.073 | 343 | 221 | 13 | 55 | 373 | 52 | 382 | 1.24e-13 | 72.8 |
MsG0680034332.01.T01 | AT5G07870 | 23.542 | 463 | 305 | 19 | 2 | 423 | 7 | 461 | 1.65e-11 | 66.2 |
MsG0680034332.01.T01 | AT4G29250 | 27.381 | 168 | 94 | 6 | 22 | 169 | 32 | 191 | 2.05e-11 | 65.9 |
MsG0680034332.01.T02 | AT1G24430 | 42.424 | 132 | 76 | 0 | 1 | 132 | 298 | 429 | 9.97e-31 | 114 |
MsG0680034332.01.T02 | AT3G26040 | 53.947 | 76 | 35 | 0 | 57 | 132 | 358 | 433 | 5.97e-23 | 93.2 |
MsG0680034332.01.T02 | AT1G24420 | 45.000 | 100 | 52 | 2 | 35 | 131 | 333 | 432 | 1.13e-22 | 92.4 |
MsG0680034332.01.T02 | AT1G24420 | 45.000 | 100 | 52 | 2 | 35 | 131 | 333 | 432 | 1.13e-22 | 92.4 |
MsG0680034332.01.T02 | AT3G30280 | 43.210 | 81 | 45 | 1 | 53 | 132 | 360 | 440 | 2.01e-20 | 85.9 |
MsG0680034332.01.T02 | AT5G23970 | 33.333 | 135 | 84 | 2 | 3 | 132 | 292 | 425 | 3.15e-20 | 85.5 |
MsG0680034332.01.T02 | AT4G15390 | 43.210 | 81 | 45 | 1 | 53 | 132 | 363 | 443 | 1.00e-19 | 84.0 |
MsG0680034332.01.T02 | AT4G15390 | 43.210 | 81 | 45 | 1 | 53 | 132 | 363 | 443 | 1.00e-19 | 84.0 |
MsG0680034332.01.T02 | AT5G47980 | 33.577 | 137 | 75 | 3 | 7 | 131 | 307 | 439 | 1.38e-18 | 80.9 |
MsG0680034332.01.T02 | AT4G15400 | 36.066 | 122 | 58 | 3 | 32 | 134 | 314 | 434 | 1.15e-16 | 75.5 |
MsG0680034332.01.T02 | AT5G47950 | 39.506 | 81 | 48 | 1 | 53 | 132 | 343 | 423 | 1.21e-16 | 75.5 |
Find 71 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTTTCTCTCTAAATAATTT+TGG | 0.114275 | 6:+85846117 | None:intergenic |
TTCCATCTTCATCAAGATTT+TGG | 0.131779 | 6:+85846571 | None:intergenic |
TACCACAATCTCTGGGAAAA+TGG | 0.164083 | 6:+85846479 | None:intergenic |
CCAATGTATGAAGCGGATTT+TGG | 0.170583 | 6:-85846003 | MsG0680034332.01.T01:CDS |
AAAACAATGTGGTATTTAAA+AGG | 0.222238 | 6:-85846449 | MsG0680034332.01.T01:CDS |
CCAACATGGGTGACCACTTT+TGG | 0.236794 | 6:-85845970 | MsG0680034332.01.T01:CDS |
ATCATTCATGAAGTTGAAAA+TGG | 0.240127 | 6:+85846608 | None:intergenic |
CAAGCACGCTGTTTCAATAA+TGG | 0.246941 | 6:-85846331 | MsG0680034332.01.T01:CDS |
CATCATGTCTAAACATTGTT+TGG | 0.259672 | 6:+85845811 | None:intergenic |
GTTTATTTGAATGGCTATAA+AGG | 0.308022 | 6:+85846695 | None:intergenic |
GGAAATGGAAATAGAGGATT+TGG | 0.317777 | 6:-85846184 | MsG0680034332.01.T01:CDS |
AAGCACGCTGTTTCAATAAT+GGG | 0.324962 | 6:-85846330 | MsG0680034332.01.T01:CDS |
ATTTGCATGAGTCACAAAAT+TGG | 0.329140 | 6:-85846642 | MsG0680034332.01.T01:CDS |
TCTCTCTTTACCACAATCTC+TGG | 0.338772 | 6:+85846471 | None:intergenic |
TCTTTCCATTGCAATTCATC+AGG | 0.366379 | 6:+85846735 | None:intergenic |
TGCAAAACAGTTTATTTGAA+TGG | 0.367290 | 6:+85846686 | None:intergenic |
TCACCCTTTAGTTTACTTGA+TGG | 0.383738 | 6:-85846534 | MsG0680034332.01.T01:CDS |
TGAGAAGGAGTTGGTGATGA+AGG | 0.383816 | 6:+85847050 | None:intergenic |
GAACATGGAAGATAATTATA+TGG | 0.400217 | 6:-85845881 | MsG0680034332.01.T01:CDS |
TGCAGTGATTAAGTCTCTTA+AGG | 0.405342 | 6:-85846412 | MsG0680034332.01.T01:CDS |
GTTGGCAAATAAGAAGGAAA+TGG | 0.414374 | 6:-85846199 | MsG0680034332.01.T01:CDS |
TTTCAACTTCATGAATGATT+GGG | 0.414945 | 6:-85846604 | MsG0680034332.01.T01:CDS |
GATTAAGTCTCTTAAGGAAA+TGG | 0.420225 | 6:-85846406 | MsG0680034332.01.T01:CDS |
ACCACAATCTCTGGGAAAAT+GGG | 0.431736 | 6:+85846480 | None:intergenic |
TAAGAAGGAAATGGAAATAG+AGG | 0.434120 | 6:-85846190 | MsG0680034332.01.T01:CDS |
AGTTGGTGATGAAGGTTTGA+TGG | 0.434934 | 6:+85847058 | None:intergenic |
AGCCAAAATCTTGATGAAGA+TGG | 0.438456 | 6:-85846573 | MsG0680034332.01.T01:CDS |
TGCAATGGAAAGACATGGAT+TGG | 0.442817 | 6:-85846725 | MsG0680034332.01.T01:CDS |
GGATAAAGTTTGAGGTGAGA+AGG | 0.443809 | 6:+85847035 | None:intergenic |
GTCTATGTTGGCAAATAAGA+AGG | 0.447511 | 6:-85846205 | MsG0680034332.01.T01:CDS |
CCAAAATCCGCTTCATACAT+TGG | 0.450217 | 6:+85846003 | None:intergenic |
ATCAATGTTTAGCATGGTTG+TGG | 0.450484 | 6:-85846292 | MsG0680034332.01.T01:CDS |
ACCTTGATCATTGCATTCAA+TGG | 0.451625 | 6:+85846842 | None:intergenic |
TCCTCCATCAAGTAAACTAA+AGG | 0.453406 | 6:+85846530 | None:intergenic |
AAAGTGTAGGGAACATACTT+TGG | 0.455506 | 6:-85846233 | MsG0680034332.01.T01:CDS |
TTGGTCTGTCAAATAAAAGA+AGG | 0.457762 | 6:-85846165 | MsG0680034332.01.T01:CDS |
CCATGCTAAACATTGATGTC+TGG | 0.457782 | 6:+85846298 | None:intergenic |
TTAAGAGACTTAATCACTGC+AGG | 0.463023 | 6:+85846414 | None:intergenic |
AAGTAATGACACATAGTTAC+GGG | 0.468479 | 6:+85846986 | None:intergenic |
AAGAGAGTGGATAAAGTTTG+AGG | 0.488221 | 6:+85847027 | None:intergenic |
GCAATTCATCAGGGAACAAA+GGG | 0.500489 | 6:+85846745 | None:intergenic |
CTCTCTTTACCACAATCTCT+GGG | 0.506292 | 6:+85846472 | None:intergenic |
CCTCCATCAAGTAAACTAAA+GGG | 0.507177 | 6:+85846531 | None:intergenic |
TGGATACAAGAGATGGAGAT+GGG | 0.510515 | 6:-85845918 | MsG0680034332.01.T01:CDS |
ACCATTGAATGCAATGATCA+AGG | 0.512385 | 6:-85846843 | MsG0680034332.01.T01:CDS |
AGAAAGTAATTCTATTTCCA+TGG | 0.521761 | 6:+85847088 | None:intergenic |
AGTTTGAGGTGAGAAGGAGT+TGG | 0.524419 | 6:+85847041 | None:intergenic |
CCTTACAGAACAACCAAAAG+TGG | 0.529496 | 6:+85845957 | None:intergenic |
AAAATGGGCAAATCCCTTTG+TGG | 0.529925 | 6:+85846495 | None:intergenic |
CCAGACATCAATGTTTAGCA+TGG | 0.535069 | 6:-85846298 | MsG0680034332.01.T01:CDS |
TGCAATTCATCAGGGAACAA+AGG | 0.535516 | 6:+85846744 | None:intergenic |
CTTTCCATTGCAATTCATCA+GGG | 0.536177 | 6:+85846736 | None:intergenic |
ATGGATACAAGAGATGGAGA+TGG | 0.539300 | 6:-85845919 | MsG0680034332.01.T01:CDS |
AAAGTAATGACACATAGTTA+CGG | 0.546947 | 6:+85846985 | None:intergenic |
AACATTGTTTGGATTAAGAG+AGG | 0.547055 | 6:+85845822 | None:intergenic |
ATTATTTAGAGAGAAAGAGA+AGG | 0.560275 | 6:-85846112 | MsG0680034332.01.T01:CDS |
CCCTTTAGTTTACTTGATGG+AGG | 0.573653 | 6:-85846531 | MsG0680034332.01.T01:CDS |
CCAAAAGTGGTCACCCATGT+TGG | 0.577438 | 6:+85845970 | None:intergenic |
AGTTACAACTTGTACACGTG+TGG | 0.588043 | 6:+85846365 | None:intergenic |
TGGTCTGTCAAATAAAAGAA+GGG | 0.590588 | 6:-85846164 | MsG0680034332.01.T01:CDS |
TTGGATGGGGAAAACCAACA+TGG | 0.595660 | 6:-85845984 | MsG0680034332.01.T01:CDS |
TGTTCCCTGATGAATTGCAA+TGG | 0.602006 | 6:-85846740 | MsG0680034332.01.T01:CDS |
TCGGTTTCCAATGTATGAAG+CGG | 0.603496 | 6:-85846010 | MsG0680034332.01.T01:CDS |
GATTGAAGCAATTGTGAACA+TGG | 0.613709 | 6:-85845896 | MsG0680034332.01.T01:CDS |
AGCACGCTGTTTCAATAATG+GGG | 0.615102 | 6:-85846329 | MsG0680034332.01.T01:CDS |
ATGTTGTCTATGAAAGAGAG+TGG | 0.633995 | 6:+85847014 | None:intergenic |
TGAATTGCAATGGAAAGACA+TGG | 0.639854 | 6:-85846730 | MsG0680034332.01.T01:CDS |
GTTACAACTTGTACACGTGT+GGG | 0.659137 | 6:+85846366 | None:intergenic |
TGGATGGGGAAAACCAACAT+GGG | 0.660202 | 6:-85845983 | MsG0680034332.01.T01:CDS |
GTGTACAAGTTGTAACTGCG+TGG | 0.696651 | 6:-85846359 | MsG0680034332.01.T01:CDS |
GGTAAAGAGAGAAAACAATG+TGG | 0.722617 | 6:-85846460 | MsG0680034332.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAACAATGTGGTATTTAAA+AGG | - | Chr6:85846456-85846475 | MsG0680034332.01.T01:CDS | 20.0% |
!!! | AAACTTTTATTCTCAGAATA+TGG | + | Chr6:85846854-85846873 | None:intergenic | 20.0% |
!!! | AAGGAATATTGTAATTTTGA+TGG | - | Chr6:85846967-85846986 | MsG0680034332.01.T01:CDS | 20.0% |
!!! | TCTTTCTCTCTAAATAATTT+TGG | + | Chr6:85846791-85846810 | None:intergenic | 20.0% |
! | AAAGTAATGACACATAGTTA+CGG | + | Chr6:85845923-85845942 | None:intergenic | 25.0% |
! | ATCATTCATGAAGTTGAAAA+TGG | + | Chr6:85846300-85846319 | None:intergenic | 25.0% |
! | ATTATTTAGAGAGAAAGAGA+AGG | - | Chr6:85846793-85846812 | MsG0680034332.01.T01:CDS | 25.0% |
! | GAACATGGAAGATAATTATA+TGG | - | Chr6:85847024-85847043 | MsG0680034332.01.T01:CDS | 25.0% |
! | GTTTATTTGAATGGCTATAA+AGG | + | Chr6:85846213-85846232 | None:intergenic | 25.0% |
! | TGCAAAACAGTTTATTTGAA+TGG | + | Chr6:85846222-85846241 | None:intergenic | 25.0% |
! | TTTCAACTTCATGAATGATT+GGG | - | Chr6:85846301-85846320 | MsG0680034332.01.T01:CDS | 25.0% |
!! | TCTAAATACTATCATTTTGC+TGG | - | Chr6:85846020-85846039 | MsG0680034332.01.T01:CDS | 25.0% |
!! | TTTTCAACTTCATGAATGAT+TGG | - | Chr6:85846300-85846319 | MsG0680034332.01.T01:CDS | 25.0% |
!!! | GTTTGTTTACTTTTAGTAGT+TGG | - | Chr6:85846870-85846889 | MsG0680034332.01.T01:CDS | 25.0% |
AACATTGTTTGGATTAAGAG+AGG | + | Chr6:85847086-85847105 | None:intergenic | 30.0% | |
AAGTAATGACACATAGTTAC+GGG | + | Chr6:85845922-85845941 | None:intergenic | 30.0% | |
ATTTGCATGAGTCACAAAAT+TGG | - | Chr6:85846263-85846282 | MsG0680034332.01.T01:CDS | 30.0% | |
GATTAAGTCTCTTAAGGAAA+TGG | - | Chr6:85846499-85846518 | MsG0680034332.01.T01:CDS | 30.0% | |
TAAGAAGGAAATGGAAATAG+AGG | - | Chr6:85846715-85846734 | MsG0680034332.01.T01:CDS | 30.0% | |
TGGTCTGTCAAATAAAAGAA+GGG | - | Chr6:85846741-85846760 | MsG0680034332.01.T01:CDS | 30.0% | |
TTGGTCTGTCAAATAAAAGA+AGG | - | Chr6:85846740-85846759 | MsG0680034332.01.T01:CDS | 30.0% | |
! | AATACTATCATTTTGCTGGT+AGG | - | Chr6:85846024-85846043 | MsG0680034332.01.T01:CDS | 30.0% |
! | CAAATAAACTGTTTTGCATG+TGG | - | Chr6:85846224-85846243 | MsG0680034332.01.T01:CDS | 30.0% |
! | CATTGCATGAAAAAAGTGTA+GGG | - | Chr6:85846660-85846679 | MsG0680034332.01.T01:CDS | 30.0% |
! | TTCCATCTTCATCAAGATTT+TGG | + | Chr6:85846337-85846356 | None:intergenic | 30.0% |
!! | ATTTTGATGGATACAAGAGA+TGG | - | Chr6:85846980-85846999 | MsG0680034332.01.T01:CDS | 30.0% |
!! | TTACTTTTAGTAGTTGGTGT+CGG | - | Chr6:85846876-85846895 | MsG0680034332.01.T01:CDS | 30.0% |
!!! | GTTGTGCTATTTTGGAATTT+TGG | + | Chr6:85845974-85845993 | None:intergenic | 30.0% |
!!! | TGTGTTATTTTTAGTCACAG+AGG | - | Chr6:85846085-85846104 | MsG0680034332.01.T01:CDS | 30.0% |
!!! | TTTTCGAAGTTGTGCTATTT+TGG | + | Chr6:85845982-85846001 | None:intergenic | 30.0% |
AAAGTGTAGGGAACATACTT+TGG | - | Chr6:85846672-85846691 | MsG0680034332.01.T01:CDS | 35.0% | |
AAGAGAGTGGATAAAGTTTG+AGG | + | Chr6:85845881-85845900 | None:intergenic | 35.0% | |
ACCATTGAATGCAATGATCA+AGG | - | Chr6:85846062-85846081 | MsG0680034332.01.T01:CDS | 35.0% | |
ACCTTGATCATTGCATTCAA+TGG | + | Chr6:85846066-85846085 | None:intergenic | 35.0% | |
AGCCAAAATCTTGATGAAGA+TGG | - | Chr6:85846332-85846351 | MsG0680034332.01.T01:CDS | 35.0% | |
ATCAATGTTTAGCATGGTTG+TGG | - | Chr6:85846613-85846632 | MsG0680034332.01.T01:CDS | 35.0% | |
ATGTTGTCTATGAAAGAGAG+TGG | + | Chr6:85845894-85845913 | None:intergenic | 35.0% | |
CCTCCATCAAGTAAACTAAA+GGG | + | Chr6:85846377-85846396 | None:intergenic | 35.0% | |
CTTTCCATTGCAATTCATCA+GGG | + | Chr6:85846172-85846191 | None:intergenic | 35.0% | |
GATTGAAGCAATTGTGAACA+TGG | - | Chr6:85847009-85847028 | MsG0680034332.01.T01:CDS | 35.0% | |
GGAAATGGAAATAGAGGATT+TGG | - | Chr6:85846721-85846740 | MsG0680034332.01.T01:CDS | 35.0% | |
GGTAAAGAGAGAAAACAATG+TGG | - | Chr6:85846445-85846464 | MsG0680034332.01.T01:CDS | 35.0% | |
GTCTATGTTGGCAAATAAGA+AGG | - | Chr6:85846700-85846719 | MsG0680034332.01.T01:CDS | 35.0% | |
GTTGGCAAATAAGAAGGAAA+TGG | - | Chr6:85846706-85846725 | MsG0680034332.01.T01:CDS | 35.0% | |
TCCTCCATCAAGTAAACTAA+AGG | + | Chr6:85846378-85846397 | None:intergenic | 35.0% | |
TCTTTCCATTGCAATTCATC+AGG | + | Chr6:85846173-85846192 | None:intergenic | 35.0% | |
TGAATTGCAATGGAAAGACA+TGG | - | Chr6:85846175-85846194 | MsG0680034332.01.T01:CDS | 35.0% | |
TGCAGTGATTAAGTCTCTTA+AGG | - | Chr6:85846493-85846512 | MsG0680034332.01.T01:CDS | 35.0% | |
TTAAGAGACTTAATCACTGC+AGG | + | Chr6:85846494-85846513 | None:intergenic | 35.0% | |
! | AAGCACGCTGTTTCAATAAT+GGG | - | Chr6:85846575-85846594 | MsG0680034332.01.T01:CDS | 35.0% |
! | ACAGATTTTCAGTGGGATTT+TGG | + | Chr6:85846136-85846155 | None:intergenic | 35.0% |
! | ATAAACTGTTTTGCATGTGG+AGG | - | Chr6:85846227-85846246 | MsG0680034332.01.T01:CDS | 35.0% |
! | CCATTGCATGAAAAAAGTGT+AGG | - | Chr6:85846659-85846678 | MsG0680034332.01.T01:CDS | 35.0% |
! | TCACCCTTTAGTTTACTTGA+TGG | - | Chr6:85846371-85846390 | MsG0680034332.01.T01:CDS | 35.0% |
! | TTTTGGTCTCTACTCTTGTT+TGG | + | Chr6:85845957-85845976 | None:intergenic | 35.0% |
!!! | ACACTTTTTTCATGCAATGG+AGG | + | Chr6:85846659-85846678 | None:intergenic | 35.0% |
!!! | ACTTTGGTTTTCGTCTATGT+TGG | - | Chr6:85846688-85846707 | MsG0680034332.01.T01:CDS | 35.0% |
!!! | ATCAAGATTTTGGCTGATCA+TGG | + | Chr6:85846327-85846346 | None:intergenic | 35.0% |
!!! | CCTACACTTTTTTCATGCAA+TGG | + | Chr6:85846662-85846681 | None:intergenic | 35.0% |
AAAATGGGCAAATCCCTTTG+TGG | + | Chr6:85846413-85846432 | None:intergenic | 40.0% | |
AGTTACAACTTGTACACGTG+TGG | + | Chr6:85846543-85846562 | None:intergenic | 40.0% | |
ATGGATACAAGAGATGGAGA+TGG | - | Chr6:85846986-85847005 | MsG0680034332.01.T01:CDS | 40.0% | |
CCAAAATCCGCTTCATACAT+TGG | + | Chr6:85846905-85846924 | None:intergenic | 40.0% | |
CCAGACATCAATGTTTAGCA+TGG | - | Chr6:85846607-85846626 | MsG0680034332.01.T01:CDS | 40.0% | |
CCATGCTAAACATTGATGTC+TGG | + | Chr6:85846610-85846629 | None:intergenic | 40.0% | |
CCTTACAGAACAACCAAAAG+TGG | + | Chr6:85846951-85846970 | None:intergenic | 40.0% | |
CTCTCTTTACCACAATCTCT+GGG | + | Chr6:85846436-85846455 | None:intergenic | 40.0% | |
GCAATTCATCAGGGAACAAA+GGG | + | Chr6:85846163-85846182 | None:intergenic | 40.0% | |
GTTACAACTTGTACACGTGT+GGG | + | Chr6:85846542-85846561 | None:intergenic | 40.0% | |
TCGGTTTCCAATGTATGAAG+CGG | - | Chr6:85846895-85846914 | MsG0680034332.01.T01:CDS | 40.0% | |
TCTCTCTTTACCACAATCTC+TGG | + | Chr6:85846437-85846456 | None:intergenic | 40.0% | |
TGCAATGGAAAGACATGGAT+TGG | - | Chr6:85846180-85846199 | MsG0680034332.01.T01:CDS | 40.0% | |
TGCAATTCATCAGGGAACAA+AGG | + | Chr6:85846164-85846183 | None:intergenic | 40.0% | |
TGGATACAAGAGATGGAGAT+GGG | - | Chr6:85846987-85847006 | MsG0680034332.01.T01:CDS | 40.0% | |
TGTTCCCTGATGAATTGCAA+TGG | - | Chr6:85846165-85846184 | MsG0680034332.01.T01:CDS | 40.0% | |
! | ACCACAATCTCTGGGAAAAT+GGG | + | Chr6:85846428-85846447 | None:intergenic | 40.0% |
! | AGCACGCTGTTTCAATAATG+GGG | - | Chr6:85846576-85846595 | MsG0680034332.01.T01:CDS | 40.0% |
! | AGGGTTCAACAGATTTTCAG+TGG | + | Chr6:85846144-85846163 | None:intergenic | 40.0% |
! | CAAGCACGCTGTTTCAATAA+TGG | - | Chr6:85846574-85846593 | MsG0680034332.01.T01:CDS | 40.0% |
! | CCCTTTAGTTTACTTGATGG+AGG | - | Chr6:85846374-85846393 | MsG0680034332.01.T01:CDS | 40.0% |
! | GGATAAAGTTTGAGGTGAGA+AGG | + | Chr6:85845873-85845892 | None:intergenic | 40.0% |
! | GGGTTCAACAGATTTTCAGT+GGG | + | Chr6:85846143-85846162 | None:intergenic | 40.0% |
! | TACCACAATCTCTGGGAAAA+TGG | + | Chr6:85846429-85846448 | None:intergenic | 40.0% |
!! | AGTTGGTGATGAAGGTTTGA+TGG | + | Chr6:85845850-85845869 | None:intergenic | 40.0% |
!! | CCAATGTATGAAGCGGATTT+TGG | - | Chr6:85846902-85846921 | MsG0680034332.01.T01:CDS | 40.0% |
!! | CCACTTTTGGTTGTTCTGTA+AGG | - | Chr6:85846948-85846967 | MsG0680034332.01.T01:CDS | 40.0% |
!! | GTATGAAGCGGATTTTGGAT+GGG | - | Chr6:85846907-85846926 | MsG0680034332.01.T01:CDS | 40.0% |
!! | TATGAAGCGGATTTTGGATG+GGG | - | Chr6:85846908-85846927 | MsG0680034332.01.T01:CDS | 40.0% |
!! | TGTATGAAGCGGATTTTGGA+TGG | - | Chr6:85846906-85846925 | MsG0680034332.01.T01:CDS | 40.0% |
!!! | AGCGTCGATTTTTCCACAAA+GGG | - | Chr6:85846397-85846416 | MsG0680034332.01.T01:CDS | 40.0% |
GTGTACAAGTTGTAACTGCG+TGG | - | Chr6:85846546-85846565 | MsG0680034332.01.T01:CDS | 45.0% | |
TGGATGGGGAAAACCAACAT+GGG | - | Chr6:85846922-85846941 | MsG0680034332.01.T01:CDS | 45.0% | |
TTGGATGGGGAAAACCAACA+TGG | - | Chr6:85846921-85846940 | MsG0680034332.01.T01:CDS | 45.0% | |
! | AGTTTGAGGTGAGAAGGAGT+TGG | + | Chr6:85845867-85845886 | None:intergenic | 45.0% |
! | CTGTTTTGCATGTGGAGGAA+TGG | - | Chr6:85846232-85846251 | MsG0680034332.01.T01:CDS | 45.0% |
!! | TGAGAAGGAGTTGGTGATGA+AGG | + | Chr6:85845858-85845877 | None:intergenic | 45.0% |
!!! | GAGCGTCGATTTTTCCACAA+AGG | - | Chr6:85846396-85846415 | MsG0680034332.01.T01:CDS | 45.0% |
CCAAAAGTGGTCACCCATGT+TGG | + | Chr6:85846938-85846957 | None:intergenic | 50.0% | |
! | CCAACATGGGTGACCACTTT+TGG | - | Chr6:85846935-85846954 | MsG0680034332.01.T01:CDS | 50.0% |
! | GCCCATTTTCCCAGAGATTG+TGG | - | Chr6:85846424-85846443 | MsG0680034332.01.T01:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr6 | gene | 85845819 | 85847108 | 85845819 | ID=MsG0680034332.01;Name=MsG0680034332.01 |
Chr6 | mRNA | 85845819 | 85847108 | 85845819 | ID=MsG0680034332.01.T01;Parent=MsG0680034332.01;Name=MsG0680034332.01.T01;_AED=0.02;_eAED=0.02;_QI=0|-1|0|1|-1|1|1|0|429 |
Chr6 | exon | 85845819 | 85847108 | 85845819 | ID=MsG0680034332.01.T01:exon:7200;Parent=MsG0680034332.01.T01 |
Chr6 | CDS | 85845819 | 85847108 | 85845819 | ID=MsG0680034332.01.T01:cds;Parent=MsG0680034332.01.T01 |
Chr6 | mRNA | 85845819 | 85846223 | 85845819 | ID=MsG0680034332.01.T02;Parent=MsG0680034332.01;Name=MsG0680034332.01.T02;_AED=0.35;_eAED=0.35;_QI=0|-1|0|1|-1|0|1|0|134 |
Chr6 | exon | 85845819 | 85846223 | 85845819 | ID=MsG0680034332.01.T02:exon:7201;Parent=MsG0680034332.01.T02 |
Chr6 | CDS | 85845819 | 85846223 | 85845819 | ID=MsG0680034332.01.T02:cds;Parent=MsG0680034332.01.T02 |
Gene Sequence |
Protein sequence |