AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017944.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017944.01.T01 MTR_3g115600 64.835 364 73 6 9 317 3 366 1.22e-151 430
MsG0380017944.01.T01 MTR_5g006670 57.062 354 99 1 14 314 6 359 9.58e-143 407
MsG0380017944.01.T01 MTR_5g006710 55.367 354 105 5 14 314 10 363 2.24e-133 384
MsG0380017944.01.T01 MTR_5g006740 53.936 343 116 2 14 314 6 348 4.16e-130 375
MsG0380017944.01.T01 MTR_5g006740 50.556 360 119 4 14 314 6 365 4.19e-123 357
MsG0380017944.01.T01 MTR_5g006780 46.832 363 130 6 14 314 10 371 1.02e-99 298
MsG0380017944.01.T01 MTR_5g006800 69.588 194 59 0 121 314 176 369 1.30e-98 295
MsG0380017944.01.T01 MTR_5g006800 66.964 112 37 0 8 119 4 115 1.15e-47 164
MsG0380017944.01.T01 MTR_5g008040 68.394 193 61 0 121 313 178 370 1.53e-97 293
MsG0380017944.01.T01 MTR_5g008040 59.091 110 45 0 14 123 12 121 7.67e-41 146
MsG0380017944.01.T01 MTR_5g006750 67.526 194 63 0 121 314 178 371 8.26e-97 291
MsG0380017944.01.T01 MTR_5g006750 66.071 112 34 2 14 122 10 120 9.36e-43 151
MsG0380017944.01.T01 MTR_5g006720 40.526 380 128 9 5 314 1 352 7.73e-76 236
MsG0380017944.01.T01 MTR_4g125470 53.922 204 83 4 121 313 185 388 6.68e-68 218
MsG0380017944.01.T01 MTR_5g006730 67.857 112 36 0 14 125 10 121 5.86e-49 160
MsG0380017944.01.T01 MTR_3g096570 77.049 61 14 0 121 181 9 69 1.12e-25 103
MsG0380017944.01.T01 MTR_3g096562 76.667 60 14 0 122 181 174 233 3.77e-24 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017944.01.T01 AT1G09400 54.206 321 94 1 25 292 4 324 6.40e-120 348
MsG0380017944.01.T01 AT1G09400 56.061 264 63 1 82 292 2 265 7.36e-101 297
MsG0380017944.01.T01 AT1G76680 69.231 195 60 0 121 315 176 370 7.18e-97 291
MsG0380017944.01.T01 AT1G76680 69.231 195 60 0 121 315 201 395 2.23e-96 290
MsG0380017944.01.T01 AT1G76680 64.407 118 42 0 5 122 1 118 2.49e-46 161
MsG0380017944.01.T01 AT1G76690 68.205 195 62 0 121 315 178 372 1.08e-95 288
MsG0380017944.01.T01 AT1G17990 47.674 258 81 3 8 211 1 258 5.63e-78 239
MsG0380017944.01.T01 AT1G18020 47.674 258 81 3 8 211 1 258 5.63e-78 239
MsG0380017944.01.T01 AT1G17990 44.961 258 80 4 8 211 1 250 1.67e-69 217
MsG0380017944.01.T01 AT2G06050 50.242 207 89 3 121 313 179 385 6.05e-65 209
MsG0380017944.01.T01 AT2G06050 50.242 207 89 3 121 313 179 385 6.05e-65 209
MsG0380017944.01.T01 AT2G06050 50.242 207 89 3 121 313 179 385 6.05e-65 209

Find 86 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCAAATACCAGGTGTATT+TGG 0.127154 3:+102502272 None:intergenic
AAGGACCTTGTTCTTGTTAA+AGG 0.178211 3:+102502900 None:intergenic
TGTCGTTCACTTTGTCCTTT+AGG 0.228951 3:+102500945 None:intergenic
ACCCAAATACACCTGGTATT+TGG 0.251049 3:-102502274 MsG0380017944.01.T01:CDS
GATCTTTCTCATGGGCATTA+AGG 0.258096 3:+102500661 None:intergenic
CTTCTTGATGGGGAAGCCTC+AGG 0.313488 3:-102502816 MsG0380017944.01.T01:CDS
TCTTATCAGCCTTGTTCAAT+TGG 0.321623 3:+102500495 None:intergenic
GGTGCGGATTTGGTAGCTTA+TGG 0.322401 3:-102500569 MsG0380017944.01.T01:CDS
TACCAAATCCGCACCATTGC+TGG 0.328132 3:+102500577 None:intergenic
GCATCCAACTCAAATCTTCT+AGG 0.344741 3:+102500518 None:intergenic
AATGGAACATTTATTGTTGC+TGG 0.345581 3:-102500635 MsG0380017944.01.T01:CDS
TCCAAATACCAGGTGTATTT+GGG 0.345635 3:+102502273 None:intergenic
GCTAAGTCATTAAGTGAATT+AGG 0.356165 3:-102500752 MsG0380017944.01.T01:CDS
TTCTCTCTTCCATATCGCTT+TGG 0.363646 3:+102503123 None:intergenic
GTAGAGTGACCAAAGCGATA+TGG 0.382511 3:-102503132 MsG0380017944.01.T01:exon
GGCCAGCAATGGTGCGGATT+TGG 0.384528 3:-102500579 MsG0380017944.01.T01:CDS
TACACCAATGATCCTGTTGT+TGG 0.393076 3:-102500464 MsG0380017944.01.T01:CDS
CTTATCAGCCTTGTTCAATT+GGG 0.402003 3:+102500496 None:intergenic
TCAAATCTTCTAGGAAGATC+TGG 0.403955 3:+102500527 None:intergenic
GACTCTAACCCTCATGCTTT+AGG 0.410599 3:-102500785 MsG0380017944.01.T01:CDS
TTCTTGATGGGGAAGCCTCA+GGG 0.414065 3:-102502815 MsG0380017944.01.T01:CDS
AACAAAGGGTGGCTTCTTGA+TGG 0.417485 3:-102502828 MsG0380017944.01.T01:CDS
TTGTTGCTGGTGGATACAAT+AGG 0.419806 3:-102500622 MsG0380017944.01.T01:CDS
CATGGGCATTAAGGACTCAT+TGG 0.438978 3:+102500670 None:intergenic
GTGGAGATACATGGAGCTAA+TGG 0.442093 3:-102500986 MsG0380017944.01.T01:CDS
AAAGCAGTTGTTGATGAGAT+TGG 0.442364 3:-102500863 MsG0380017944.01.T01:CDS
ACAAAGGGTGGCTTCTTGAT+GGG 0.459306 3:-102502827 MsG0380017944.01.T01:CDS
AACAAGGTCCTTCAATTTCG+TGG 0.462495 3:-102502889 MsG0380017944.01.T01:CDS
ATATCCAACAACAGGATCAT+TGG 0.464074 3:+102500460 None:intergenic
GCTGGAAGAGTGTCCAACTA+TGG 0.469322 3:-102502167 MsG0380017944.01.T01:intron
GTTGGAGCTGTTCATGAGAA+AGG 0.473716 3:-102502218 MsG0380017944.01.T01:CDS
TCATGAACAGCTCCAACAAT+GGG 0.476202 3:+102502224 None:intergenic
TCAAACATGGTGCACATCCC+AGG 0.477008 3:+102500704 None:intergenic
ATTCTTCAACGAACAACAAA+GGG 0.477156 3:-102502842 MsG0380017944.01.T01:CDS
CTTGCTTGATCAATTCCTAA+AGG 0.484914 3:-102500960 MsG0380017944.01.T01:CDS
TATTGTCATGTCATTGAACC+TGG 0.489334 3:-102500722 MsG0380017944.01.T01:CDS
CTCATGAACAGCTCCAACAA+TGG 0.489730 3:+102502223 None:intergenic
TCCATTGAAGATCTTTCTCA+TGG 0.490323 3:+102500652 None:intergenic
CCCATGAGAAAGATCTTCAA+TGG 0.491062 3:-102500653 MsG0380017944.01.T01:CDS
TAATCAGTATATCCAACAAC+AGG 0.503211 3:+102500452 None:intergenic
TCTTGATGGGGAAGCCTCAG+GGG 0.507314 3:-102502814 MsG0380017944.01.T01:CDS
CTAAAACCAGATACCATAGT+TGG 0.509794 3:+102502154 None:intergenic
GAAGCATGGAAACCCATTGT+TGG 0.513600 3:-102502236 MsG0380017944.01.T01:CDS
TGGTATTTGGACAAGAGAAC+AGG 0.514806 3:-102502261 MsG0380017944.01.T01:CDS
GAGAGAATAGAAGTGGTTGA+AGG 0.517064 3:-102503107 MsG0380017944.01.T01:CDS
TCTTCCTAGAAGATTTGAGT+TGG 0.518058 3:-102500522 MsG0380017944.01.T01:CDS
TTTGATGGAGTGGAGATACA+TGG 0.518838 3:-102500995 MsG0380017944.01.T01:CDS
CATTCACAATAATCAGCATA+AGG 0.519406 3:+102500812 None:intergenic
ATCAATTATATAAACAGAGT+GGG 0.530258 3:-102503159 None:intergenic
CGGATTTGGTAGCTTATGGA+AGG 0.547082 3:-102500565 MsG0380017944.01.T01:CDS
AACGACAGAGATGATGAGTA+TGG 0.548461 3:-102500929 MsG0380017944.01.T01:CDS
TATTCTTCAACGAACAACAA+AGG 0.548660 3:-102502843 MsG0380017944.01.T01:CDS
GAATAAAGAGCAGCATGTGC+TGG 0.555511 3:+102502861 None:intergenic
TATGGAAGAGAGAATAGAAG+TGG 0.557200 3:-102503114 MsG0380017944.01.T01:CDS
CCATTGAAGATCTTTCTCAT+GGG 0.558552 3:+102500653 None:intergenic
GGAAAATTCATCTGTCCCAC+AGG 0.562859 3:-102503046 MsG0380017944.01.T01:intron
GGAACATTTATTGTTGCTGG+TGG 0.563883 3:-102500632 MsG0380017944.01.T01:CDS
CAAGAGAACAGGTGGAAGCA+TGG 0.564931 3:-102502250 MsG0380017944.01.T01:CDS
TGTTCTCTTGTCCAAATACC+AGG 0.570132 3:+102502263 None:intergenic
TCGTTGTCGCTTCCCTCTAG+AGG 0.579003 3:-102500891 MsG0380017944.01.T01:CDS
TATGCTGATTATTGTGAATG+TGG 0.581554 3:-102500809 MsG0380017944.01.T01:CDS
CAAAGGGTGGCTTCTTGATG+GGG 0.582745 3:-102502826 MsG0380017944.01.T01:CDS
ACTGCTTTCACAACCTCTAG+AGG 0.583197 3:+102500878 None:intergenic
AACAATGTGTTGGCCAGCAA+TGG 0.583715 3:-102500590 MsG0380017944.01.T01:CDS
GGTGGATACAATAGGACTGA+AGG 0.596483 3:-102500614 MsG0380017944.01.T01:CDS
GGGGTCTCAGACACTGCACA+AGG 0.597651 3:-102502795 MsG0380017944.01.T01:CDS
TGGTTGAGCCACGAAATTGA+AGG 0.607509 3:+102502881 None:intergenic
GACTGAAGGAAACAATGTGT+TGG 0.609986 3:-102500600 MsG0380017944.01.T01:CDS
ACAGAGATGATGAGTATGGT+GGG 0.612337 3:-102500925 MsG0380017944.01.T01:CDS
ATGTAGATGCCTAAAGCATG+AGG 0.612576 3:+102500776 None:intergenic
AATCAATTATATAAACAGAG+TGG 0.615746 3:-102503160 None:intergenic
TCATGCTTTAGGCATCTACA+TGG 0.616635 3:-102500774 MsG0380017944.01.T01:CDS
GAGATTGGAGCTGACAAAGT+TGG 0.616749 3:-102500848 MsG0380017944.01.T01:CDS
CTGCTTTCACAACCTCTAGA+GGG 0.620027 3:+102500879 None:intergenic
GACAGAGATGATGAGTATGG+TGG 0.624080 3:-102500926 MsG0380017944.01.T01:CDS
CTTCAACGAACAACAAAGGG+TGG 0.627888 3:-102502839 MsG0380017944.01.T01:CDS
ATTGTCATGTCATTGAACCT+GGG 0.637262 3:-102500721 MsG0380017944.01.T01:CDS
TTGCACCTTTAACAAGAACA+AGG 0.637602 3:-102502905 MsG0380017944.01.T01:CDS
TGAAGGTACCCAAATACACC+TGG 0.648170 3:-102502281 MsG0380017944.01.T01:intron
TGCAGTGTCTGAGACCCCTG+AGG 0.651692 3:+102502800 None:intergenic
TATTTGGACAAGAGAACAGG+TGG 0.653872 3:-102502258 MsG0380017944.01.T01:CDS
GTTGGATGCCCAATTGAACA+AGG 0.658985 3:-102500504 MsG0380017944.01.T01:CDS
GGAGCTGTTCATGAGAAAGG+AGG 0.677401 3:-102502215 MsG0380017944.01.T01:CDS
TGTAGATGCCTAAAGCATGA+GGG 0.695124 3:+102500777 None:intergenic
TGTGTTGGCCAGCAATGGTG+CGG 0.698432 3:-102500585 MsG0380017944.01.T01:CDS
GGGTCTCAGACACTGCACAA+GGG 0.738404 3:-102502794 MsG0380017944.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAACTAAAATAAATAC+AGG - Chr3:102502480-102502499 MsG0380017944.01.T01:intron 10.0%
!!! AAAGATTTTTTAAAAAGTAA+TGG - Chr3:102501708-102501727 MsG0380017944.01.T01:intron 10.0%
!!! AAAGATTTTTTTAAACTAAT+GGG + Chr3:102501450-102501469 None:intergenic 10.0%
!!! AAGATTTTTTAAAAAGTAAT+GGG - Chr3:102501709-102501728 MsG0380017944.01.T01:intron 10.0%
!!! ATTACTTTTTAAAAAATCTT+TGG + Chr3:102501709-102501728 None:intergenic 10.0%
!!! ATTAGTTTAAAAAAATCTTT+GGG - Chr3:102501450-102501469 MsG0380017944.01.T01:intron 10.0%
!!! TTACTTTTTAAAAAATCTTT+GGG + Chr3:102501708-102501727 None:intergenic 10.0%
!! ATTCTTAGATAAAATATTCT+TGG - Chr3:102501928-102501947 MsG0380017944.01.T01:intron 15.0%
!! TGCAATATCAATTTATTATT+TGG - Chr3:102502209-102502228 MsG0380017944.01.T01:CDS 15.0%
!! TTTCTTCAAAAAAAAAACAT+TGG + Chr3:102501025-102501044 None:intergenic 15.0%
!!! AAAATAACATCTCTATTTTT+TGG - Chr3:102500793-102500812 MsG0380017944.01.T01:CDS 15.0%
!!! AAATAACATCTCTATTTTTT+GGG - Chr3:102500794-102500813 MsG0380017944.01.T01:CDS 15.0%
!!! CAAAGATTTTTTTAAACTAA+TGG + Chr3:102501451-102501470 None:intergenic 15.0%
!!! CATTAGTTTAAAAAAATCTT+TGG - Chr3:102501449-102501468 MsG0380017944.01.T01:intron 15.0%
!!! GTGTTTTATTACATTAAAAT+GGG - Chr3:102501807-102501826 MsG0380017944.01.T01:intron 15.0%
!!! TGTGTTTTATTACATTAAAA+TGG - Chr3:102501806-102501825 MsG0380017944.01.T01:intron 15.0%
!! ACAAATTTGATTGTTAACAT+TGG + Chr3:102501058-102501077 None:intergenic 20.0%
!! ACAATGAATAGTTACAATAT+AGG + Chr3:102501120-102501139 None:intergenic 20.0%
!! ACTAAACAATTTACTTCAAA+TGG - Chr3:102501880-102501899 MsG0380017944.01.T01:intron 20.0%
!! ACTAAATAAATTATTACCTG+TGG + Chr3:102500472-102500491 None:intergenic 20.0%
!! CTAAATAAATTATTACCTGT+GGG + Chr3:102500471-102500490 None:intergenic 20.0%
!! TATAAATTGTAATATCATGC+AGG - Chr3:102502297-102502316 MsG0380017944.01.T01:intron 20.0%
!! TATTAAAAGACGAATTGTTT+AGG - Chr3:102501493-102501512 MsG0380017944.01.T01:intron 20.0%
!!! AAAATAAATACAGGTTTTGA+TGG - Chr3:102502489-102502508 MsG0380017944.01.T01:intron 20.0%
!!! CATTGTAAAATGTTTTTTGT+AGG + Chr3:102500869-102500888 None:intergenic 20.0%
!!! CTACAAAAAACATTTTACAA+TGG - Chr3:102500867-102500886 MsG0380017944.01.T01:CDS 20.0%
! TGGTTAATAAACTAAGAACT+CGG - Chr3:102501900-102501919 MsG0380017944.01.T01:intron 25.0%
!! CCAACAAATAATCTAAAGTT+CGG + Chr3:102501577-102501596 None:intergenic 25.0%
!!! CATTTTTGTGTTGTCTTATT+AGG - Chr3:102500564-102500583 MsG0380017944.01.T01:CDS 25.0%
AAAAACTGATGACACAAACA+AGG + Chr3:102501531-102501550 None:intergenic 30.0%
AAAGTCAATCAATGTGATGA+GGG + Chr3:102500505-102500524 None:intergenic 30.0%
AACGTTCTATCGATATATGT+AGG + Chr3:102502011-102502030 None:intergenic 30.0%
AATGGAACATTTATTGTTGC+TGG - Chr3:102502864-102502883 MsG0380017944.01.T01:CDS 30.0%
ATGAGCTTGAGAACAAAAAT+AGG + Chr3:102500741-102500760 None:intergenic 30.0%
ATTCTTCAACGAACAACAAA+GGG - Chr3:102500657-102500676 MsG0380017944.01.T01:CDS 30.0%
CATTCACAATAATCAGCATA+AGG + Chr3:102502690-102502709 None:intergenic 30.0%
CCGAACTTTAGATTATTTGT+TGG - Chr3:102501574-102501593 MsG0380017944.01.T01:intron 30.0%
CTAATAATTACCTGCTTCTA+TGG + Chr3:102502189-102502208 None:intergenic 30.0%
CTCTAGTGTAATCTAATTAG+AGG + Chr3:102502333-102502352 None:intergenic 30.0%
GCTAAGTCATTAAGTGAATT+AGG - Chr3:102502747-102502766 MsG0380017944.01.T01:intron 30.0%
GTGTATATGTATGTAATGAC+TGG - Chr3:102500891-102500910 MsG0380017944.01.T01:CDS 30.0%
TAATCAGTATATCCAACAAC+AGG + Chr3:102503050-102503069 None:intergenic 30.0%
TATTCTTCAACGAACAACAA+AGG - Chr3:102500656-102500675 MsG0380017944.01.T01:CDS 30.0%
TGAGCTTGAGAACAAAAATA+GGG + Chr3:102500740-102500759 None:intergenic 30.0%
TTAGATCAAATGAGATGCAA+TGG - Chr3:102500989-102501008 MsG0380017944.01.T01:CDS 30.0%
! ATGAATTTTCCCATGTTGTA+TGG + Chr3:102500444-102500463 None:intergenic 30.0%
! CGAATTGTTTAGGAGAATTT+TGG - Chr3:102501503-102501522 MsG0380017944.01.T01:intron 30.0%
! GCATATTCTTTTGTCAACTT+TGG - Chr3:102501306-102501325 MsG0380017944.01.T01:intron 30.0%
! TATGCTGATTATTGTGAATG+TGG - Chr3:102502690-102502709 MsG0380017944.01.T01:intron 30.0%
! TGAAGTCATTGACAACTTTT+GGG + Chr3:102502149-102502168 None:intergenic 30.0%
! TGAATTTTCCCATGTTGTAT+GGG + Chr3:102500443-102500462 None:intergenic 30.0%
! TTTGAATCCTTGGTAATTGA+AGG - Chr3:102501201-102501220 MsG0380017944.01.T01:intron 30.0%
!! CTAGTAGCATTTTCAAGAAA+TGG + Chr3:102503074-102503093 None:intergenic 30.0%
AAATAGGCACTACAAAAGCA+AGG - Chr3:102502077-102502096 MsG0380017944.01.T01:intron 35.0%
AAGGACCTTGTTCTTGTTAA+AGG + Chr3:102500602-102500621 None:intergenic 35.0%
AGAATTGTCTAACGCAAGTA+AGG - Chr3:102501629-102501648 MsG0380017944.01.T01:intron 35.0%
AGTTGTCAATGACTTCAGAA+TGG - Chr3:102502152-102502171 MsG0380017944.01.T01:intron 35.0%
ATATCCAACAACAGGATCAT+TGG + Chr3:102503042-102503061 None:intergenic 35.0%
ATTGTCATGTCATTGAACCT+GGG - Chr3:102502778-102502797 MsG0380017944.01.T01:intron 35.0%
CAAAGTCAATCAATGTGATG+AGG + Chr3:102500506-102500525 None:intergenic 35.0%
CATCATTGCTATGTAATGCA+AGG + Chr3:102502361-102502380 None:intergenic 35.0%
CCATTGAAGATCTTTCTCAT+GGG + Chr3:102502849-102502868 None:intergenic 35.0%
CTAAAACCAGATACCATAGT+TGG + Chr3:102501348-102501367 None:intergenic 35.0%
CTTGCTTGATCAATTCCTAA+AGG - Chr3:102502539-102502558 MsG0380017944.01.T01:intron 35.0%
TACTTGCGTTAGACAATTCT+TGG + Chr3:102501629-102501648 None:intergenic 35.0%
TATGGAAGAGAGAATAGAAG+TGG - Chr3:102500385-102500404 MsG0380017944.01.T01:three_prime_UTR 35.0%
TATTGTCATGTCATTGAACC+TGG - Chr3:102502777-102502796 MsG0380017944.01.T01:intron 35.0%
TCCAAATACCAGGTGTATTT+GGG + Chr3:102501229-102501248 None:intergenic 35.0%
TCCATTGAAGATCTTTCTCA+TGG + Chr3:102502850-102502869 None:intergenic 35.0%
TCTTCCTAGAAGATTTGAGT+TGG - Chr3:102502977-102502996 MsG0380017944.01.T01:intron 35.0%
TTGCACCTTTAACAAGAACA+AGG - Chr3:102500594-102500613 MsG0380017944.01.T01:CDS 35.0%
! AAAGCAGTTGTTGATGAGAT+TGG - Chr3:102502636-102502655 MsG0380017944.01.T01:intron 35.0%
! AATTTTCCCATGTTGTATGG+GGG + Chr3:102500441-102500460 None:intergenic 35.0%
! CTGAAGTCATTGACAACTTT+TGG + Chr3:102502150-102502169 None:intergenic 35.0%
! GAATTTTCCCATGTTGTATG+GGG + Chr3:102500442-102500461 None:intergenic 35.0%
! TCAAATCTTCTAGGAAGATC+TGG + Chr3:102502975-102502994 None:intergenic 35.0%
! TCGATAGAACGTTTTTGAAC+AGG - Chr3:102502018-102502037 MsG0380017944.01.T01:intron 35.0%
!! AAATACAGGTTTTGATGGAG+TGG - Chr3:102502494-102502513 MsG0380017944.01.T01:intron 35.0%
!! CTTATCAGCCTTGTTCAATT+GGG + Chr3:102503006-102503025 None:intergenic 35.0%
!! GGTGTCACATTTTTCAAACA+TGG + Chr3:102502811-102502830 None:intergenic 35.0%
!! GTCTCAATGTTTTGAATCCT+TGG - Chr3:102501191-102501210 MsG0380017944.01.T01:intron 35.0%
!! TCTTATCAGCCTTGTTCAAT+TGG + Chr3:102503007-102503026 None:intergenic 35.0%
AACAAGGTCCTTCAATTTCG+TGG - Chr3:102500610-102500629 MsG0380017944.01.T01:CDS 40.0%
AACGACAGAGATGATGAGTA+TGG - Chr3:102502570-102502589 MsG0380017944.01.T01:intron 40.0%
AATCAATGTGATGAGGGTCT+AGG + Chr3:102500499-102500518 None:intergenic 40.0%
ACAGAGATGATGAGTATGGT+GGG - Chr3:102502574-102502593 MsG0380017944.01.T01:intron 40.0%
ACCCAAATACACCTGGTATT+TGG - Chr3:102501225-102501244 MsG0380017944.01.T01:intron 40.0%
ATGTAGATGCCTAAAGCATG+AGG + Chr3:102502726-102502745 None:intergenic 40.0%
CCCATGAGAAAGATCTTCAA+TGG - Chr3:102502846-102502865 MsG0380017944.01.T01:CDS 40.0%
CCCCTGCATTAGAAACAATA+CGG - Chr3:102501402-102501421 MsG0380017944.01.T01:intron 40.0%
CCTATTTGTGCTTGAGATTG+GGG + Chr3:102502064-102502083 None:intergenic 40.0%
CTATTTGTGCTTGAGATTGG+GGG + Chr3:102502063-102502082 None:intergenic 40.0%
GACTGAAGGAAACAATGTGT+TGG - Chr3:102502899-102502918 MsG0380017944.01.T01:CDS 40.0%
GAGAGAATAGAAGTGGTTGA+AGG - Chr3:102500392-102500411 MsG0380017944.01.T01:three_prime_UTR 40.0%
GATCTTTCTCATGGGCATTA+AGG + Chr3:102502841-102502860 None:intergenic 40.0%
GCATCCAACTCAAATCTTCT+AGG + Chr3:102502984-102503003 None:intergenic 40.0%
GCCTATTTGTGCTTGAGATT+GGG + Chr3:102502065-102502084 None:intergenic 40.0%
GGAACATTTATTGTTGCTGG+TGG - Chr3:102502867-102502886 MsG0380017944.01.T01:CDS 40.0%
GTCAGATTTCGCTTATCATG+TGG - Chr3:102501551-102501570 MsG0380017944.01.T01:intron 40.0%
GTCCAAATACCAGGTGTATT+TGG + Chr3:102501230-102501249 None:intergenic 40.0%
TACACCAATGATCCTGTTGT+TGG - Chr3:102503035-102503054 MsG0380017944.01.T01:intron 40.0%
TATTTGGACAAGAGAACAGG+TGG - Chr3:102501241-102501260 MsG0380017944.01.T01:intron 40.0%
TCATGAACAGCTCCAACAAT+GGG + Chr3:102501278-102501297 None:intergenic 40.0%
TGCCTATTTGTGCTTGAGAT+TGG + Chr3:102502066-102502085 None:intergenic 40.0%
TGGTATTTGGACAAGAGAAC+AGG - Chr3:102501238-102501257 MsG0380017944.01.T01:intron 40.0%
TGTAGATGCCTAAAGCATGA+GGG + Chr3:102502725-102502744 None:intergenic 40.0%
TGTCGTTCACTTTGTCCTTT+AGG + Chr3:102502557-102502576 None:intergenic 40.0%
TGTTCTCTTGTCCAAATACC+AGG + Chr3:102501239-102501258 None:intergenic 40.0%
TTCTCTCTTCCATATCGCTT+TGG + Chr3:102500379-102500398 None:intergenic 40.0%
TTGGGTACCTTCAATTACCA+AGG + Chr3:102501211-102501230 None:intergenic 40.0%
TTTGATGGAGTGGAGATACA+TGG - Chr3:102502504-102502523 MsG0380017944.01.T01:intron 40.0%
! AGCTTATGGAAGGCTCTTTT+TGG - Chr3:102502944-102502963 MsG0380017944.01.T01:intron 40.0%
! TACCTGCTTCTATGGCATTT+TGG + Chr3:102502181-102502200 None:intergenic 40.0%
! TCATGCTTTAGGCATCTACA+TGG - Chr3:102502725-102502744 MsG0380017944.01.T01:intron 40.0%
! TTGTTGCTGGTGGATACAAT+AGG - Chr3:102502877-102502896 MsG0380017944.01.T01:CDS 40.0%
!! AGCCGTATTGTTTCTAATGC+AGG + Chr3:102501407-102501426 None:intergenic 40.0%
!! CCGTATTGTTTCTAATGCAG+GGG + Chr3:102501405-102501424 None:intergenic 40.0%
!! GCCGTATTGTTTCTAATGCA+GGG + Chr3:102501406-102501425 None:intergenic 40.0%
AACAAAGGGTGGCTTCTTGA+TGG - Chr3:102500671-102500690 MsG0380017944.01.T01:CDS 45.0%
ACAAAGGGTGGCTTCTTGAT+GGG - Chr3:102500672-102500691 MsG0380017944.01.T01:CDS 45.0%
ACTGCTTTCACAACCTCTAG+AGG + Chr3:102502624-102502643 None:intergenic 45.0%
AGCCAAAATGCCATAGAAGC+AGG - Chr3:102502176-102502195 MsG0380017944.01.T01:CDS 45.0%
ATGTTGTATGGGGGTGAGAA+GGG + Chr3:102500432-102500451 None:intergenic 45.0%
CATGGGCATTAAGGACTCAT+TGG + Chr3:102502832-102502851 None:intergenic 45.0%
CCCCAATCTCAAGCACAAAT+AGG - Chr3:102502061-102502080 MsG0380017944.01.T01:intron 45.0%
CTCATGAACAGCTCCAACAA+TGG + Chr3:102501279-102501298 None:intergenic 45.0%
CTGCTTTCACAACCTCTAGA+GGG + Chr3:102502623-102502642 None:intergenic 45.0%
CTTCAACGAACAACAAAGGG+TGG - Chr3:102500660-102500679 MsG0380017944.01.T01:CDS 45.0%
GAAGCATGGAAACCCATTGT+TGG - Chr3:102501263-102501282 MsG0380017944.01.T01:intron 45.0%
GAATAAAGAGCAGCATGTGC+TGG + Chr3:102500641-102500660 None:intergenic 45.0%
GACAGAGATGATGAGTATGG+TGG - Chr3:102502573-102502592 MsG0380017944.01.T01:intron 45.0%
GACTCTAACCCTCATGCTTT+AGG - Chr3:102502714-102502733 MsG0380017944.01.T01:intron 45.0%
GAGATTGGAGCTGACAAAGT+TGG - Chr3:102502651-102502670 MsG0380017944.01.T01:intron 45.0%
GAGTGTCCAACTATGGTATC+TGG - Chr3:102501339-102501358 MsG0380017944.01.T01:intron 45.0%
GGAAAATTCATCTGTCCCAC+AGG - Chr3:102500453-102500472 MsG0380017944.01.T01:CDS 45.0%
GGTGGATACAATAGGACTGA+AGG - Chr3:102502885-102502904 MsG0380017944.01.T01:CDS 45.0%
GTAGAGTGACCAAAGCGATA+TGG - Chr3:102500367-102500386 MsG0380017944.01.T01:three_prime_UTR 45.0%
GTGGAGATACATGGAGCTAA+TGG - Chr3:102502513-102502532 MsG0380017944.01.T01:intron 45.0%
GTTGGAGCTGTTCATGAGAA+AGG - Chr3:102501281-102501300 MsG0380017944.01.T01:intron 45.0%
GTTGGATGCCCAATTGAACA+AGG - Chr3:102502995-102503014 MsG0380017944.01.T01:intron 45.0%
TGAACAGGTTACCAACCAGA+TGG - Chr3:102502033-102502052 MsG0380017944.01.T01:intron 45.0%
TGGTTGAGCCACGAAATTGA+AGG + Chr3:102500621-102500640 None:intergenic 45.0%
TTCTCACCCCCATACAACAT+GGG - Chr3:102500432-102500451 MsG0380017944.01.T01:CDS 45.0%
! AACAATGTGTTGGCCAGCAA+TGG - Chr3:102502909-102502928 MsG0380017944.01.T01:CDS 45.0%
! CGGATTTGGTAGCTTATGGA+AGG - Chr3:102502934-102502953 MsG0380017944.01.T01:intron 45.0%
! TTTTGTCAACTTTGGCACGC+TGG - Chr3:102501314-102501333 MsG0380017944.01.T01:intron 45.0%
!! TGAAGGTACCCAAATACACC+TGG - Chr3:102501218-102501237 MsG0380017944.01.T01:intron 45.0%
CAAAGGGTGGCTTCTTGATG+GGG - Chr3:102500673-102500692 MsG0380017944.01.T01:CDS 50.0%
CAAGAGAACAGGTGGAAGCA+TGG - Chr3:102501249-102501268 MsG0380017944.01.T01:intron 50.0%
CATGTTGTATGGGGGTGAGA+AGG + Chr3:102500433-102500452 None:intergenic 50.0%
CTTCTCACCCCCATACAACA+TGG - Chr3:102500431-102500450 MsG0380017944.01.T01:CDS 50.0%
GGAGCTGTTCATGAGAAAGG+AGG - Chr3:102501284-102501303 MsG0380017944.01.T01:intron 50.0%
TACCAAATCCGCACCATTGC+TGG + Chr3:102502925-102502944 None:intergenic 50.0%
TCAAACATGGTGCACATCCC+AGG + Chr3:102502798-102502817 None:intergenic 50.0%
TGTTGTATGGGGGTGAGAAG+GGG + Chr3:102500431-102500450 None:intergenic 50.0%
TTCATCGTTGTGAGACGTCG+AGG + Chr3:102502124-102502143 None:intergenic 50.0%
TTCTTGATGGGGAAGCCTCA+GGG - Chr3:102500684-102500703 MsG0380017944.01.T01:CDS 50.0%
! GGTGCGGATTTGGTAGCTTA+TGG - Chr3:102502930-102502949 MsG0380017944.01.T01:intron 50.0%
!! GCTGGAAGAGTGTCCAACTA+TGG - Chr3:102501332-102501351 MsG0380017944.01.T01:intron 50.0%
CTTCTTGATGGGGAAGCCTC+AGG - Chr3:102500683-102500702 MsG0380017944.01.T01:CDS 55.0%
GGGTCTCAGACACTGCACAA+GGG - Chr3:102500705-102500724 MsG0380017944.01.T01:CDS 55.0%
GTTGTGAGACGTCGAGGAGT+GGG + Chr3:102502118-102502137 None:intergenic 55.0%
TCTTGATGGGGAAGCCTCAG+GGG - Chr3:102500685-102500704 MsG0380017944.01.T01:CDS 55.0%
! TCGTTGTCGCTTCCCTCTAG+AGG - Chr3:102502608-102502627 MsG0380017944.01.T01:intron 55.0%
! TGTGTTGGCCAGCAATGGTG+CGG - Chr3:102502914-102502933 MsG0380017944.01.T01:CDS 55.0%
CGTTGTGAGACGTCGAGGAG+TGG + Chr3:102502119-102502138 None:intergenic 60.0%
GAGATTGGGGGCTGTCCATC+TGG + Chr3:102502051-102502070 None:intergenic 60.0%
GGCCAGCAATGGTGCGGATT+TGG - Chr3:102502920-102502939 MsG0380017944.01.T01:intron 60.0%
GGGGTCTCAGACACTGCACA+AGG - Chr3:102500704-102500723 MsG0380017944.01.T01:CDS 60.0%
TTGGGGGCTGTCCATCTGGT+TGG + Chr3:102502047-102502066 None:intergenic 60.0%
! TGCAGTGTCTGAGACCCCTG+AGG + Chr3:102500702-102500721 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 102500347 102503174 102500347 ID=MsG0380017944.01;Name=MsG0380017944.01
Chr3 mRNA 102500347 102503174 102500347 ID=MsG0380017944.01.T01;Parent=MsG0380017944.01;Name=MsG0380017944.01.T01;_AED=0.49;_eAED=0.49;_QI=39|0.66|1|1|1|1|4|77|318
Chr3 exon 102500347 102501019 102500347 ID=MsG0380017944.01.T01:exon:18280;Parent=MsG0380017944.01.T01
Chr3 exon 102502168 102502298 102502168 ID=MsG0380017944.01.T01:exon:18279;Parent=MsG0380017944.01.T01
Chr3 exon 102502795 102502935 102502795 ID=MsG0380017944.01.T01:exon:18278;Parent=MsG0380017944.01.T01
Chr3 exon 102503047 102503174 102503047 ID=MsG0380017944.01.T01:exon:18277;Parent=MsG0380017944.01.T01
Chr3 five_prime_UTR 102503136 102503174 102503136 ID=MsG0380017944.01.T01:five_prime_utr;Parent=MsG0380017944.01.T01
Chr3 CDS 102503047 102503135 102503047 ID=MsG0380017944.01.T01:cds;Parent=MsG0380017944.01.T01
Chr3 CDS 102502795 102502935 102502795 ID=MsG0380017944.01.T01:cds;Parent=MsG0380017944.01.T01
Chr3 CDS 102502168 102502298 102502168 ID=MsG0380017944.01.T01:cds;Parent=MsG0380017944.01.T01
Chr3 CDS 102500424 102501019 102500424 ID=MsG0380017944.01.T01:cds;Parent=MsG0380017944.01.T01
Chr3 three_prime_UTR 102500347 102500423 102500347 ID=MsG0380017944.01.T01:three_prime_utr;Parent=MsG0380017944.01.T01
Gene Sequence

>MsG0380017944.01.T01

ATGGAAGAGAGAATAGAAGTGGTTGAAGGAAAAGAAGTGATACCCCTTCTCACCCCCATACAACATGGGAAAATTCATCTGTCCCACAGGATAGTTCTTGCACCTTTAACAAGAACAAGGTCCTTCAATTTCGTGGCTCAACCAGCACATGCTGCTCTTTATTCTTCAACGAACAACAAAGGGTGGCTTCTTGATGGGGAAGCCTCAGGGGTCTCAGACACTGCACAAGGGTACCCAAATACACCTGGTATTTGGACAAGAGAACAGGTGGAAGCATGGAAACCCATTGTTGGAGCTGTTCATGAGAAAGGAGGCATATTCTTTTGTCAACTTTGGCACGCTGGAAGAGTGTCCAACTATGGTTTTGATGGAGTGGAGATACATGGAGCTAATGGATACTTGCTTGATCAATTCCTAAAGGACAAAGTGAACGACAGAGATGATGAGTATGGTGGGAGCGTAGAAAATCGTTGTCGCTTCCCTCTAGAGGTTGTGAAAGCAGTTGTTGATGAGATTGGAGCTGACAAAGTTGGTGTTAGACTTTCACCTTATGCTGATTATTGTGAATGTGGAGACTCTAACCCTCATGCTTTAGGCATCTACATGGCTAAGTCATTAAGTGAATTAGGCATTCTCTATTGTCATGTCATTGAACCTGGGATGTGCACCATGTTTGAAAAATGTGACACCAATGAGTCCTTAATGCCCATGAGAAAGATCTTCAATGGAACATTTATTGTTGCTGGTGGATACAATAGGACTGAAGGAAACAATGTGTTGGCCAGCAATGGTGCGGATTTGGTAGCTTATGGAAGGCTCTTTTTGGCAAATCCAGATCTTCCTAGAAGATTTGAGTTGGATGCCCAATTGAACAAGGCTGATAAGAGTACTTTTTACACCAATGATCCTGTTGTTGGATATACTGATTATCCATTTCTTGAAAATGCTACTAGCTAG
Protein sequence

>MsG0380017944.01.T01

MEERIEVVEGKEVIPLLTPIQHGKIHLSHRIVLAPLTRTRSFNFVAQPAHAALYSSTNNKGWLLDGEASGVSDTAQGYPNTPGIWTREQVEAWKPIVGAVHEKGGIFFCQLWHAGRVSNYGFDGVEIHGANGYLLDQFLKDKVNDRDDEYGGSVENRCRFPLEVVKAVVDEIGADKVGVRLSPYADYCECGDSNPHALGIYMAKSLSELGILYCHVIEPGMCTMFEKCDTNESLMPMRKIFNGTFIVAGGYNRTEGNNVLASNGADLVAYGRLFLANPDLPRRFELDAQLNKADKSTFYTNDPVVGYTDYPFLENATS*