Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018208.01.T01 | RHN46368.1 | 77.941 | 476 | 105 | 0 | 1 | 476 | 375 | 850 | 0 | 790 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018208.01.T01 | A0A396H0U1 | 77.941 | 476 | 105 | 0 | 1 | 476 | 375 | 850 | 0.0 | 790 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047925.01 | MsG0480018208.01 | 0.816573 | 5.158674e-52 | 3.668864e-49 |
| MsG0180002518.01 | MsG0480018208.01 | 0.805591 | 1.239767e-49 | 6.584824e-47 |
| MsG0280006325.01 | MsG0480018208.01 | 0.806428 | 8.264377e-50 | 4.484610e-47 |
| MsG0480018208.01 | MsG0480018664.01 | 0.801651 | 8.142112e-49 | 3.909260e-46 |
| MsG0480018208.01 | MsG0880044644.01 | 0.812870 | 3.411205e-51 | 2.193557e-48 |
| MsG0280009248.01 | MsG0480018208.01 | 0.801826 | 7.496869e-49 | 3.615576e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018208.01.T01 | MTR_3g457840 | 77.941 | 476 | 105 | 0 | 1 | 476 | 1 | 476 | 0.0 | 786 |
| MsG0480018208.01.T01 | MTR_0143s0020 | 78.151 | 476 | 104 | 0 | 1 | 476 | 1 | 476 | 0.0 | 785 |
| MsG0480018208.01.T01 | MTR_5g470710 | 77.941 | 476 | 105 | 0 | 1 | 476 | 1 | 476 | 0.0 | 784 |
| MsG0480018208.01.T01 | MTR_6g014055 | 78.151 | 476 | 104 | 0 | 1 | 476 | 1 | 476 | 0.0 | 783 |
| MsG0480018208.01.T01 | MTR_3g026088 | 77.941 | 476 | 105 | 0 | 1 | 476 | 1 | 476 | 0.0 | 783 |
| MsG0480018208.01.T01 | MTR_7g081465 | 78.151 | 476 | 104 | 0 | 1 | 476 | 1 | 476 | 0.0 | 782 |
| MsG0480018208.01.T01 | MTR_0038s0010 | 78.151 | 476 | 104 | 0 | 1 | 476 | 1 | 476 | 0.0 | 781 |
| MsG0480018208.01.T01 | MTR_8g047030 | 77.731 | 476 | 106 | 0 | 1 | 476 | 1 | 476 | 0.0 | 780 |
| MsG0480018208.01.T01 | MTR_3g026875 | 78.243 | 478 | 102 | 1 | 1 | 476 | 1 | 478 | 0.0 | 779 |
| MsG0480018208.01.T01 | MTR_2g435990 | 77.521 | 476 | 107 | 0 | 1 | 476 | 1 | 476 | 0.0 | 779 |
| MsG0480018208.01.T01 | MTR_0350s0030 | 77.731 | 476 | 106 | 0 | 1 | 476 | 1 | 476 | 0.0 | 778 |
| MsG0480018208.01.T01 | MTR_0029s0020 | 78.243 | 478 | 102 | 1 | 1 | 476 | 1 | 478 | 0.0 | 778 |
| MsG0480018208.01.T01 | MTR_0143s0050 | 78.452 | 478 | 101 | 1 | 1 | 476 | 1 | 478 | 0.0 | 778 |
| MsG0480018208.01.T01 | MTR_4g016445 | 77.731 | 476 | 106 | 0 | 1 | 476 | 1 | 476 | 0.0 | 778 |
| MsG0480018208.01.T01 | MTR_3g049113 | 77.101 | 476 | 109 | 0 | 1 | 476 | 1 | 476 | 0.0 | 778 |
| MsG0480018208.01.T01 | MTR_6g074695 | 77.521 | 476 | 107 | 0 | 1 | 476 | 1 | 476 | 0.0 | 777 |
| MsG0480018208.01.T01 | MTR_5g423980 | 77.941 | 476 | 105 | 0 | 1 | 476 | 1 | 476 | 0.0 | 777 |
| MsG0480018208.01.T01 | MTR_4g465410 | 77.941 | 476 | 105 | 0 | 1 | 476 | 1 | 476 | 0.0 | 776 |
| MsG0480018208.01.T01 | MTR_2g038655 | 77.521 | 476 | 107 | 0 | 1 | 476 | 1 | 476 | 0.0 | 776 |
| MsG0480018208.01.T01 | MTR_5g071147 | 77.311 | 476 | 108 | 0 | 1 | 476 | 1 | 476 | 0.0 | 776 |
| MsG0480018208.01.T01 | MTR_0089s0050 | 78.801 | 467 | 99 | 0 | 1 | 467 | 108 | 574 | 0.0 | 775 |
| MsG0480018208.01.T01 | MTR_6g046375 | 77.731 | 476 | 106 | 0 | 1 | 476 | 1 | 476 | 0.0 | 775 |
| MsG0480018208.01.T01 | MTR_4g044687 | 79.289 | 478 | 97 | 1 | 1 | 476 | 1 | 478 | 0.0 | 773 |
| MsG0480018208.01.T01 | MTR_7g071103 | 77.311 | 476 | 108 | 0 | 1 | 476 | 1 | 476 | 0.0 | 773 |
| MsG0480018208.01.T01 | MTR_3g451310 | 77.311 | 476 | 108 | 0 | 1 | 476 | 1 | 476 | 0.0 | 773 |
| MsG0480018208.01.T01 | MTR_6g072867 | 77.615 | 478 | 105 | 1 | 1 | 476 | 1 | 478 | 0.0 | 772 |
| MsG0480018208.01.T01 | MTR_6g065615 | 77.824 | 478 | 104 | 1 | 1 | 476 | 1 | 478 | 0.0 | 772 |
| MsG0480018208.01.T01 | MTR_0237s0060 | 76.891 | 476 | 110 | 0 | 1 | 476 | 1 | 476 | 0.0 | 771 |
| MsG0480018208.01.T01 | MTR_4g039657 | 77.311 | 476 | 108 | 0 | 1 | 476 | 1 | 476 | 0.0 | 771 |
| MsG0480018208.01.T01 | MTR_5g078975 | 77.101 | 476 | 109 | 0 | 1 | 476 | 1 | 476 | 0.0 | 770 |
| MsG0480018208.01.T01 | MTR_8g442840 | 77.406 | 478 | 106 | 1 | 1 | 476 | 1 | 478 | 0.0 | 770 |
| MsG0480018208.01.T01 | MTR_7g046515 | 79.176 | 461 | 96 | 0 | 1 | 461 | 1 | 461 | 0.0 | 769 |
| MsG0480018208.01.T01 | MTR_0089s0130 | 77.197 | 478 | 107 | 1 | 1 | 476 | 1 | 478 | 0.0 | 769 |
| MsG0480018208.01.T01 | MTR_2g090930 | 77.731 | 476 | 106 | 0 | 1 | 476 | 1 | 476 | 0.0 | 764 |
| MsG0480018208.01.T01 | MTR_5g060015 | 77.568 | 477 | 105 | 1 | 2 | 476 | 25 | 501 | 0.0 | 762 |
| MsG0480018208.01.T01 | MTR_0089s0070 | 76.987 | 478 | 108 | 1 | 1 | 476 | 1 | 478 | 0.0 | 762 |
| MsG0480018208.01.T01 | MTR_5g015985 | 77.731 | 476 | 106 | 0 | 1 | 476 | 1 | 476 | 0.0 | 759 |
| MsG0480018208.01.T01 | MTR_4g043765 | 78.947 | 456 | 96 | 0 | 1 | 456 | 1 | 456 | 0.0 | 755 |
| MsG0480018208.01.T01 | MTR_5g059485 | 77.311 | 476 | 108 | 0 | 1 | 476 | 1 | 476 | 0.0 | 754 |
| MsG0480018208.01.T01 | MTR_0336s0030 | 77.311 | 476 | 108 | 0 | 1 | 476 | 1 | 476 | 0.0 | 754 |
| MsG0480018208.01.T01 | MTR_5g095335 | 78.319 | 452 | 98 | 0 | 1 | 452 | 1 | 452 | 0.0 | 750 |
| MsG0480018208.01.T01 | MTR_8g009322 | 76.360 | 478 | 101 | 2 | 1 | 476 | 1 | 468 | 0.0 | 746 |
| MsG0480018208.01.T01 | MTR_7g071873 | 75.000 | 476 | 106 | 1 | 1 | 476 | 1 | 463 | 0.0 | 741 |
| MsG0480018208.01.T01 | MTR_3g026893 | 76.573 | 461 | 97 | 1 | 1 | 461 | 1 | 450 | 0.0 | 733 |
| MsG0480018208.01.T01 | MTR_7g010875 | 72.899 | 476 | 103 | 1 | 1 | 476 | 1 | 450 | 0.0 | 710 |
| MsG0480018208.01.T01 | MTR_6g057540 | 73.109 | 476 | 103 | 2 | 1 | 476 | 24 | 474 | 0.0 | 707 |
| MsG0480018208.01.T01 | MTR_1g051570 | 74.837 | 461 | 91 | 1 | 1 | 461 | 1 | 436 | 0.0 | 706 |
| MsG0480018208.01.T01 | MTR_4g044730 | 73.191 | 470 | 100 | 2 | 1 | 470 | 36 | 479 | 0.0 | 700 |
| MsG0480018208.01.T01 | MTR_0109s0050 | 71.548 | 478 | 108 | 2 | 1 | 476 | 1 | 452 | 0.0 | 689 |
| MsG0480018208.01.T01 | MTR_6g466430 | 70.711 | 478 | 115 | 3 | 1 | 476 | 1 | 455 | 0.0 | 679 |
| MsG0480018208.01.T01 | MTR_6g072855 | 72.594 | 478 | 111 | 4 | 1 | 476 | 12 | 471 | 0.0 | 679 |
| MsG0480018208.01.T01 | MTR_0124s0070 | 78.125 | 416 | 89 | 1 | 63 | 476 | 7 | 422 | 0.0 | 674 |
| MsG0480018208.01.T01 | MTR_4g040010 | 70.502 | 478 | 88 | 4 | 1 | 476 | 25 | 451 | 0.0 | 669 |
| MsG0480018208.01.T01 | MTR_2g065338 | 78.446 | 399 | 86 | 0 | 1 | 399 | 1 | 399 | 0.0 | 652 |
| MsG0480018208.01.T01 | MTR_6g463770 | 66.176 | 476 | 99 | 4 | 1 | 476 | 1 | 414 | 0.0 | 611 |
| MsG0480018208.01.T01 | MTR_7g070985 | 78.502 | 307 | 66 | 0 | 170 | 476 | 1 | 307 | 0.0 | 520 |
| MsG0480018208.01.T01 | MTR_8g052425 | 79.934 | 304 | 61 | 0 | 1 | 304 | 1 | 304 | 1.96e-179 | 506 |
| MsG0480018208.01.T01 | MTR_8g051925 | 66.398 | 372 | 72 | 1 | 105 | 476 | 11 | 329 | 8.61e-179 | 504 |
| MsG0480018208.01.T01 | MTR_5g041255 | 77.241 | 290 | 64 | 1 | 1 | 290 | 1 | 288 | 1.36e-160 | 464 |
| MsG0480018208.01.T01 | MTR_3g047715 | 47.309 | 446 | 232 | 2 | 2 | 445 | 6 | 450 | 2.58e-143 | 419 |
| MsG0480018208.01.T01 | MTR_0159s0050 | 78.175 | 252 | 55 | 0 | 1 | 252 | 1 | 252 | 4.93e-141 | 405 |
| MsG0480018208.01.T01 | MTR_3g013580 | 47.085 | 446 | 230 | 3 | 2 | 443 | 4 | 447 | 2.67e-140 | 411 |
| MsG0480018208.01.T01 | MTR_2g082450 | 45.770 | 461 | 245 | 3 | 2 | 457 | 6 | 466 | 5.13e-140 | 411 |
| MsG0480018208.01.T01 | MTR_2g049380 | 47.865 | 445 | 229 | 2 | 1 | 443 | 5 | 448 | 1.26e-138 | 407 |
| MsG0480018208.01.T01 | MTR_6g074500 | 45.553 | 461 | 246 | 3 | 2 | 457 | 6 | 466 | 8.55e-138 | 405 |
| MsG0480018208.01.T01 | MTR_3g091160 | 45.336 | 461 | 245 | 4 | 2 | 457 | 4 | 462 | 1.81e-135 | 399 |
| MsG0480018208.01.T01 | MTR_5g046540 | 44.902 | 461 | 249 | 3 | 2 | 457 | 6 | 466 | 5.71e-135 | 398 |
| MsG0480018208.01.T01 | MTR_5g005270 | 43.469 | 467 | 248 | 4 | 1 | 457 | 1 | 461 | 7.17e-135 | 397 |
| MsG0480018208.01.T01 | MTR_5g011880 | 43.167 | 461 | 258 | 2 | 1 | 457 | 1 | 461 | 7.57e-135 | 397 |
| MsG0480018208.01.T01 | MTR_8g038320 | 42.950 | 461 | 259 | 2 | 1 | 457 | 1 | 461 | 8.53e-135 | 397 |
| MsG0480018208.01.T01 | MTR_3g022320 | 42.950 | 461 | 259 | 2 | 1 | 457 | 1 | 461 | 1.58e-134 | 397 |
| MsG0480018208.01.T01 | MTR_3g051650 | 45.119 | 461 | 246 | 4 | 2 | 457 | 4 | 462 | 2.37e-134 | 396 |
| MsG0480018208.01.T01 | MTR_7g006680 | 44.902 | 461 | 247 | 4 | 2 | 457 | 4 | 462 | 2.85e-134 | 396 |
| MsG0480018208.01.T01 | MTR_7g046110 | 45.575 | 452 | 235 | 3 | 2 | 449 | 4 | 448 | 3.01e-134 | 396 |
| MsG0480018208.01.T01 | MTR_3g060990 | 42.733 | 461 | 260 | 2 | 1 | 457 | 1 | 461 | 4.69e-134 | 395 |
| MsG0480018208.01.T01 | MTR_3g058020 | 42.950 | 461 | 259 | 2 | 1 | 457 | 1 | 461 | 7.01e-134 | 395 |
| MsG0480018208.01.T01 | MTR_3g034870 | 42.733 | 461 | 260 | 2 | 1 | 457 | 1 | 461 | 1.00e-133 | 394 |
| MsG0480018208.01.T01 | MTR_5g080530 | 45.354 | 452 | 236 | 3 | 2 | 449 | 4 | 448 | 1.40e-133 | 394 |
| MsG0480018208.01.T01 | MTR_0047s0160 | 42.827 | 467 | 251 | 4 | 1 | 457 | 1 | 461 | 1.47e-133 | 394 |
| MsG0480018208.01.T01 | MTR_3g018710 | 42.888 | 464 | 255 | 4 | 1 | 457 | 1 | 461 | 3.38e-133 | 393 |
| MsG0480018208.01.T01 | MTR_1g053435 | 42.612 | 467 | 252 | 4 | 1 | 457 | 1 | 461 | 1.12e-132 | 392 |
| MsG0480018208.01.T01 | MTR_7g010390 | 42.733 | 461 | 260 | 2 | 1 | 457 | 1 | 461 | 1.96e-132 | 391 |
| MsG0480018208.01.T01 | MTR_4g054440 | 42.827 | 467 | 251 | 4 | 1 | 457 | 1 | 461 | 2.16e-132 | 391 |
| MsG0480018208.01.T01 | MTR_4g031710 | 42.950 | 461 | 258 | 3 | 1 | 457 | 1 | 460 | 6.69e-132 | 390 |
| MsG0480018208.01.T01 | MTR_0014s0420 | 46.171 | 444 | 236 | 2 | 2 | 443 | 6 | 448 | 2.59e-131 | 389 |
| MsG0480018208.01.T01 | MTR_0046s0100 | 43.791 | 459 | 253 | 3 | 2 | 456 | 35 | 492 | 2.82e-131 | 389 |
| MsG0480018208.01.T01 | MTR_3g015377 | 43.624 | 447 | 248 | 2 | 1 | 443 | 1 | 447 | 4.27e-131 | 388 |
| MsG0480018208.01.T01 | MTR_0866s0010 | 46.682 | 422 | 222 | 2 | 24 | 443 | 2 | 422 | 3.81e-127 | 384 |
| MsG0480018208.01.T01 | MTR_5g028560 | 45.067 | 446 | 241 | 2 | 2 | 443 | 4 | 449 | 4.35e-127 | 377 |
| MsG0480018208.01.T01 | MTR_7g079940 | 44.843 | 446 | 242 | 2 | 2 | 443 | 4 | 449 | 7.56e-127 | 377 |
| MsG0480018208.01.T01 | MTR_5g036210 | 45.190 | 447 | 239 | 3 | 2 | 443 | 4 | 449 | 1.02e-126 | 377 |
| MsG0480018208.01.T01 | MTR_3g100770 | 45.190 | 447 | 239 | 3 | 2 | 443 | 4 | 449 | 1.80e-126 | 376 |
| MsG0480018208.01.T01 | MTR_7g028120 | 45.067 | 446 | 241 | 2 | 2 | 443 | 4 | 449 | 2.52e-126 | 375 |
| MsG0480018208.01.T01 | MTR_7g077015 | 45.011 | 471 | 233 | 8 | 2 | 457 | 6 | 465 | 5.67e-126 | 375 |
| MsG0480018208.01.T01 | MTR_4g009470 | 45.556 | 450 | 237 | 4 | 2 | 445 | 6 | 453 | 8.83e-126 | 374 |
| MsG0480018208.01.T01 | MTR_6g027000 | 44.966 | 447 | 240 | 3 | 2 | 443 | 4 | 449 | 2.43e-125 | 373 |
| MsG0480018208.01.T01 | MTR_0029s0060 | 44.643 | 448 | 244 | 2 | 2 | 445 | 4 | 451 | 2.62e-125 | 373 |
| MsG0480018208.01.T01 | MTR_1g018990 | 44.619 | 446 | 243 | 2 | 2 | 443 | 4 | 449 | 2.67e-125 | 373 |
| MsG0480018208.01.T01 | MTR_3g082580 | 44.619 | 446 | 243 | 2 | 2 | 443 | 4 | 449 | 3.18e-125 | 373 |
| MsG0480018208.01.T01 | MTR_5g040810 | 44.395 | 446 | 244 | 2 | 2 | 443 | 4 | 449 | 2.26e-124 | 370 |
| MsG0480018208.01.T01 | MTR_5g074255 | 44.619 | 446 | 243 | 2 | 2 | 443 | 4 | 449 | 7.28e-124 | 369 |
| MsG0480018208.01.T01 | MTR_5g015640 | 44.170 | 446 | 245 | 2 | 2 | 443 | 4 | 449 | 4.35e-123 | 367 |
| MsG0480018208.01.T01 | MTR_3g046487 | 70.866 | 254 | 45 | 2 | 1 | 254 | 1 | 225 | 7.48e-122 | 355 |
| MsG0480018208.01.T01 | MTR_5g084310 | 44.843 | 446 | 242 | 2 | 2 | 443 | 4 | 449 | 2.40e-120 | 360 |
| MsG0480018208.01.T01 | MTR_5g085650 | 44.843 | 446 | 242 | 2 | 2 | 443 | 4 | 449 | 2.40e-120 | 360 |
| MsG0480018208.01.T01 | MTR_8g054530 | 42.516 | 461 | 234 | 5 | 2 | 457 | 6 | 440 | 2.05e-119 | 357 |
| MsG0480018208.01.T01 | MTR_6g471550 | 43.897 | 467 | 248 | 5 | 2 | 458 | 6 | 468 | 1.32e-118 | 356 |
| MsG0480018208.01.T01 | MTR_3g023410 | 44.444 | 450 | 238 | 4 | 2 | 443 | 6 | 451 | 4.46e-116 | 350 |
| MsG0480018208.01.T01 | MTR_6g061790 | 44.568 | 451 | 236 | 5 | 2 | 443 | 6 | 451 | 8.08e-116 | 349 |
| MsG0480018208.01.T01 | MTR_3g452070 | 45.961 | 359 | 192 | 1 | 2 | 358 | 6 | 364 | 5.95e-112 | 335 |
| MsG0480018208.01.T01 | MTR_3g067340 | 40.359 | 446 | 211 | 4 | 2 | 443 | 46 | 440 | 2.09e-109 | 332 |
| MsG0480018208.01.T01 | MTR_3g020590 | 41.256 | 446 | 236 | 3 | 2 | 443 | 4 | 427 | 5.37e-108 | 328 |
| MsG0480018208.01.T01 | MTR_3g047220 | 47.745 | 377 | 169 | 7 | 2 | 369 | 6 | 363 | 7.44e-108 | 327 |
| MsG0480018208.01.T01 | MTR_7g045955 | 37.901 | 467 | 235 | 4 | 1 | 459 | 1 | 420 | 2.93e-107 | 325 |
| MsG0480018208.01.T01 | MTR_1g036610 | 42.478 | 452 | 219 | 5 | 2 | 445 | 6 | 424 | 6.33e-107 | 325 |
| MsG0480018208.01.T01 | MTR_3g046447 | 68.860 | 228 | 44 | 2 | 251 | 476 | 15 | 217 | 2.21e-104 | 310 |
| MsG0480018208.01.T01 | MTR_3g451910 | 48.406 | 345 | 173 | 3 | 1 | 342 | 22 | 364 | 3.05e-104 | 318 |
| MsG0480018208.01.T01 | MTR_6g445330 | 77.128 | 188 | 41 | 1 | 290 | 475 | 1 | 188 | 2.17e-99 | 296 |
| MsG0480018208.01.T01 | MTR_7g035370 | 35.745 | 470 | 257 | 4 | 2 | 469 | 47 | 473 | 1.06e-96 | 300 |
| MsG0480018208.01.T01 | MTR_3g067475 | 41.408 | 355 | 177 | 3 | 71 | 421 | 2 | 329 | 3.07e-96 | 293 |
| MsG0480018208.01.T01 | MTR_5g086900 | 39.775 | 445 | 220 | 6 | 2 | 443 | 6 | 405 | 4.44e-95 | 294 |
| MsG0480018208.01.T01 | MTR_0632s0030 | 45.687 | 313 | 168 | 1 | 147 | 457 | 7 | 319 | 2.76e-92 | 283 |
| MsG0480018208.01.T01 | MTR_4g049270 | 38.530 | 449 | 218 | 10 | 2 | 445 | 6 | 401 | 7.50e-88 | 278 |
| MsG0480018208.01.T01 | MTR_0418s0010 | 75.145 | 173 | 43 | 0 | 1 | 173 | 1 | 173 | 2.74e-86 | 262 |
| MsG0480018208.01.T01 | MTR_3g448820 | 76.163 | 172 | 41 | 0 | 1 | 172 | 1 | 172 | 8.13e-86 | 261 |
| MsG0480018208.01.T01 | MTR_8g470910 | 43.450 | 313 | 146 | 2 | 147 | 457 | 7 | 290 | 1.12e-78 | 247 |
| MsG0480018208.01.T01 | MTR_6g464470 | 59.565 | 230 | 77 | 3 | 1 | 218 | 1 | 226 | 4.18e-76 | 245 |
| MsG0480018208.01.T01 | MTR_0260s0010 | 70.950 | 179 | 52 | 0 | 1 | 179 | 1 | 179 | 4.58e-74 | 249 |
| MsG0480018208.01.T01 | MTR_8g466900 | 40.288 | 278 | 116 | 2 | 35 | 312 | 2 | 229 | 4.92e-65 | 211 |
| MsG0480018208.01.T01 | MTR_0782s0010 | 35.036 | 274 | 136 | 3 | 170 | 443 | 1 | 232 | 1.23e-49 | 170 |
| MsG0480018208.01.T01 | MTR_6g072130 | 29.762 | 420 | 228 | 12 | 2 | 373 | 11 | 411 | 4.86e-47 | 171 |
| MsG0480018208.01.T01 | MTR_6g073790 | 74.528 | 106 | 27 | 0 | 1 | 106 | 9 | 114 | 5.95e-46 | 157 |
| MsG0480018208.01.T01 | MTR_5g081070 | 31.778 | 343 | 205 | 7 | 25 | 358 | 19 | 341 | 2.22e-45 | 162 |
| MsG0480018208.01.T01 | MTR_6g084020 | 31.965 | 341 | 181 | 9 | 22 | 336 | 14 | 329 | 1.29e-42 | 154 |
| MsG0480018208.01.T01 | MTR_0094s0100 | 36.111 | 216 | 118 | 2 | 237 | 451 | 1 | 197 | 5.75e-38 | 138 |
| MsG0480018208.01.T01 | MTR_3g053450 | 41.558 | 154 | 78 | 2 | 146 | 294 | 3 | 149 | 2.12e-31 | 119 |
| MsG0480018208.01.T01 | MTR_6g034655 | 77.941 | 68 | 15 | 0 | 1 | 68 | 1 | 68 | 2.52e-29 | 112 |
| MsG0480018208.01.T01 | MTR_0048s0010 | 38.860 | 193 | 103 | 4 | 24 | 204 | 2 | 191 | 1.50e-28 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 165 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATGCTCCCACAGGAATT+AGG | 0.179297 | 4:+1606883 | MsG0480018208.01.T01:CDS |
| TTTCTTAATGTACCTCTTCT+TGG | 0.228996 | 4:+1606750 | MsG0480018208.01.T01:CDS |
| ATTCTTGCACTCCTCATCTA+TGG | 0.237384 | 4:+1606411 | MsG0480018208.01.T01:CDS |
| TGAGCATCCTCCTACTTCTT+TGG | 0.275016 | 4:+1606248 | MsG0480018208.01.T01:CDS |
| GATCTCGCTTTGCGACAATT+TGG | 0.278644 | 4:+1606801 | MsG0480018208.01.T01:CDS |
| CAAATTCAAGGAAGTGGATT+TGG | 0.280157 | 4:+1605984 | MsG0480018208.01.T01:CDS |
| GTCTATTTCACAGAGGATTA+TGG | 0.291055 | 4:+1606653 | MsG0480018208.01.T01:CDS |
| TTCACTTCAGAGTATATTCT+TGG | 0.296037 | 4:+1606345 | MsG0480018208.01.T01:CDS |
| AGGAATTAGGGAGGGTTTCA+TGG | 0.314459 | 4:+1606896 | MsG0480018208.01.T01:CDS |
| CACCTCTTTCTTCCGAAGCT+TGG | 0.317158 | 4:-1606928 | None:intergenic |
| TTTGGCTAGTTTGAGAGATT+TGG | 0.322814 | 4:+1606002 | MsG0480018208.01.T01:CDS |
| CAAAGTAGGAACCGGATTCT+TGG | 0.336640 | 4:-1606496 | None:intergenic |
| GTGAGCCAAACCACTTCATT+AGG | 0.347141 | 4:-1606684 | None:intergenic |
| AGAGGCTTATTCTTGCTTGA+TGG | 0.348385 | 4:+1606188 | MsG0480018208.01.T01:CDS |
| AGAGTCAAGGAAATCATCTT+TGG | 0.366614 | 4:+1606717 | MsG0480018208.01.T01:CDS |
| TCCACGACAATCCGGAGAAT+TGG | 0.368047 | 4:+1606631 | MsG0480018208.01.T01:CDS |
| TCCACGAAGTCATCAAGATT+TGG | 0.368220 | 4:-1606447 | None:intergenic |
| ATCCACTTCCTTGAATTTGT+AGG | 0.371562 | 4:-1605980 | None:intergenic |
| GTTGTGTGCCTCTCCTCTAT+AGG | 0.372370 | 4:+1606580 | MsG0480018208.01.T01:CDS |
| CAATGCTCCCACAGGAATTA+GGG | 0.373773 | 4:+1606884 | MsG0480018208.01.T01:CDS |
| AATATATCCACGACCTTTGC+CGG | 0.376428 | 4:-1606553 | None:intergenic |
| CTGGTTTCCGACATCGTTAC+GGG | 0.384887 | 4:+1606046 | MsG0480018208.01.T01:CDS |
| GTAGGCACCAACTGAAAGTC+TGG | 0.392943 | 4:-1606162 | None:intergenic |
| GAGGCTTATTCTTGCTTGAT+GGG | 0.397523 | 4:+1606189 | MsG0480018208.01.T01:CDS |
| ATGGGTTTATCTATTGCTAA+GGG | 0.412389 | 4:+1606207 | MsG0480018208.01.T01:CDS |
| ACCTACCCAGGAGATGTATC+AGG | 0.413200 | 4:+1607094 | MsG0480018208.01.T01:CDS |
| TGAGCCAAACCACTTCATTA+GGG | 0.417145 | 4:-1606683 | None:intergenic |
| GATCTTCCATTCCAAGAATC+CGG | 0.425171 | 4:+1606485 | MsG0480018208.01.T01:CDS |
| GCGAAATAAACCACCTATAG+AGG | 0.425326 | 4:-1606593 | None:intergenic |
| ACGGGCACCCCTAGCCCTCT+TGG | 0.425585 | 4:-1607303 | None:intergenic |
| TACTTCTTTGGTTATTGCCA+AGG | 0.426214 | 4:+1606260 | MsG0480018208.01.T01:CDS |
| GATGGGTTTATCTATTGCTA+AGG | 0.434055 | 4:+1606206 | MsG0480018208.01.T01:CDS |
| TGGAAGCTTGGTCCAAGCTT+CGG | 0.434192 | 4:+1606916 | MsG0480018208.01.T01:CDS |
| TTCTTGCACTCCTCATCTAT+GGG | 0.435808 | 4:+1606412 | MsG0480018208.01.T01:CDS |
| AATTGTCGCAAAGCGAGATC+CGG | 0.436066 | 4:-1606798 | None:intergenic |
| TCCAAATCTTGATGACTTCG+TGG | 0.439528 | 4:+1606446 | MsG0480018208.01.T01:CDS |
| TCACCCCTAATGAAGTGGTT+TGG | 0.441464 | 4:+1606679 | MsG0480018208.01.T01:CDS |
| TGATGGGCTTATCTTTCATC+GGG | 0.441671 | 4:-1606827 | None:intergenic |
| CATGCTATTCACGATCGTTC+CGG | 0.443217 | 4:+1606534 | MsG0480018208.01.T01:CDS |
| TGAGAGACTCCAAGAGGGCT+AGG | 0.443487 | 4:+1607294 | MsG0480018208.01.T01:CDS |
| GAAGAAAGAGGTGAAGCATA+TGG | 0.444408 | 4:+1606938 | MsG0480018208.01.T01:CDS |
| ATGTACCTCTTCTTGGTACC+CGG | 0.445039 | 4:+1606757 | MsG0480018208.01.T01:CDS |
| CCTAATTCCTGTGGGAGCAT+TGG | 0.445340 | 4:-1606883 | None:intergenic |
| GTCCTACAAATTCAAGGAAG+TGG | 0.447103 | 4:+1605978 | MsG0480018208.01.T01:CDS |
| ACTGGTTTCCGACATCGTTA+CGG | 0.455402 | 4:+1606045 | MsG0480018208.01.T01:CDS |
| AATGCTCCTGATACATCTCC+TGG | 0.457080 | 4:-1607100 | None:intergenic |
| GATCGTTCCGGCAAAGGTCG+TGG | 0.459133 | 4:+1606546 | MsG0480018208.01.T01:CDS |
| GAAGTCTTTCCACGACAATC+CGG | 0.459234 | 4:+1606623 | MsG0480018208.01.T01:CDS |
| GCATTTAGCTATGGAGAGTC+GGG | 0.467908 | 4:+1607118 | MsG0480018208.01.T01:CDS |
| AGGAGCTGTAGCAAGATTGA+TGG | 0.469070 | 4:-1606844 | None:intergenic |
| GACTAAGTCCTACAAATTCA+AGG | 0.471682 | 4:+1605972 | MsG0480018208.01.T01:CDS |
| TGAGAACTTGATCATGACTT+TGG | 0.483224 | 4:+1607175 | MsG0480018208.01.T01:CDS |
| TCACTTCAGAGTATATTCTT+GGG | 0.485377 | 4:+1606346 | MsG0480018208.01.T01:CDS |
| ATTGTCGCAAAGCGAGATCC+GGG | 0.485451 | 4:-1606797 | None:intergenic |
| TTTGAGAGATTTGGCACTCA+AGG | 0.490029 | 4:+1606011 | MsG0480018208.01.T01:CDS |
| CTTGGAATGGAAGATCATAA+TGG | 0.490448 | 4:-1606478 | None:intergenic |
| TGATACATCTCCTGGGTAGG+TGG | 0.492078 | 4:-1607092 | None:intergenic |
| GGGAGGGTTTCATGGAAGCT+TGG | 0.494265 | 4:+1606904 | MsG0480018208.01.T01:CDS |
| TACTTTCCCAGACTTTCAGT+TGG | 0.495045 | 4:+1606155 | MsG0480018208.01.T01:CDS |
| ATAAACCAAGCTGAGGAGAT+TGG | 0.498676 | 4:+1607005 | MsG0480018208.01.T01:CDS |
| TCAGCTAGCAAAGTAGGAAC+CGG | 0.498881 | 4:-1606504 | None:intergenic |
| AGGTGAAGCATATGGGTGTA+AGG | 0.499200 | 4:+1606946 | MsG0480018208.01.T01:CDS |
| TTGATGGGCTTATCTTTCAT+CGG | 0.499444 | 4:-1606828 | None:intergenic |
| TAAGGCTAAGAGAGAGATTG+AGG | 0.500034 | 4:+1607253 | MsG0480018208.01.T01:CDS |
| TTCTATTCTTCATACTAATG+TGG | 0.500803 | 4:+1606077 | MsG0480018208.01.T01:CDS |
| AGCATTTAGCTATGGAGAGT+CGG | 0.500898 | 4:+1607117 | MsG0480018208.01.T01:CDS |
| TCAGTTGGTGCCTACTCTAG+AGG | 0.502024 | 4:+1606170 | MsG0480018208.01.T01:CDS |
| TTGGAGTAGTGAAAGAAGTA+AGG | 0.504418 | 4:-1606864 | None:intergenic |
| CAACCTCAATACCACTTGTC+AGG | 0.509664 | 4:+1606374 | MsG0480018208.01.T01:CDS |
| GTTATAGTTGATTCCACCCC+GGG | 0.510038 | 4:-1606775 | None:intergenic |
| CTGACAAGTGGTATTGAGGT+TGG | 0.512337 | 4:-1606373 | None:intergenic |
| AAGGAAATCATCTTTGGTGG+TGG | 0.514701 | 4:+1606723 | MsG0480018208.01.T01:CDS |
| GAGAGACTCCAAGAGGGCTA+GGG | 0.519818 | 4:+1607295 | MsG0480018208.01.T01:CDS |
| AGATTTGGCACTCAAGGTTG+AGG | 0.521650 | 4:+1606017 | MsG0480018208.01.T01:CDS |
| TGTACCTCTTCTTGGTACCC+GGG | 0.524285 | 4:+1606758 | MsG0480018208.01.T01:CDS |
| ATAAGCCTCATGAGCAATAC+CGG | 0.525460 | 4:-1606970 | None:intergenic |
| AACTTGATCATGACTTTGGA+TGG | 0.529065 | 4:+1607179 | MsG0480018208.01.T01:CDS |
| AGATCCTCAAGCATGGGAAG+TGG | 0.531612 | 4:-1607378 | None:intergenic |
| ATTCACGATCGTTCCGGCAA+AGG | 0.532432 | 4:+1606540 | MsG0480018208.01.T01:CDS |
| TGTCTGCATCTGTTCCTACC+AGG | 0.536824 | 4:+1607054 | MsG0480018208.01.T01:CDS |
| AAGAAAGAGGTGAAGCATAT+GGG | 0.537876 | 4:+1606939 | MsG0480018208.01.T01:CDS |
| AAGCATATGGGTGTAAGGTC+CGG | 0.541339 | 4:+1606951 | MsG0480018208.01.T01:CDS |
| GATACATCTCCTGGGTAGGT+GGG | 0.547650 | 4:-1607091 | None:intergenic |
| GGCTCTCACCCCTAATGAAG+TGG | 0.548061 | 4:+1606674 | MsG0480018208.01.T01:CDS |
| TATGTGTCAGCTAGCAAAGT+AGG | 0.548247 | 4:-1606510 | None:intergenic |
| TAGGAACCGGATTCTTGGAA+TGG | 0.548483 | 4:-1606491 | None:intergenic |
| AGACATCGGAGGTTGTAAGA+TGG | 0.548831 | 4:-1606287 | None:intergenic |
| CACTACTCCAATGCTCCCAC+AGG | 0.548893 | 4:+1606876 | MsG0480018208.01.T01:CDS |
| GGAGCTGTAGCAAGATTGAT+GGG | 0.552465 | 4:-1606843 | None:intergenic |
| GCCTCTACTCCCACCTACCC+AGG | 0.553067 | 4:+1607082 | MsG0480018208.01.T01:CDS |
| GTCAAGGAAATCATCTTTGG+TGG | 0.555236 | 4:+1606720 | MsG0480018208.01.T01:CDS |
| GTCACTAAGGCACGTATCCG+AGG | 0.556092 | 4:+1606321 | MsG0480018208.01.T01:CDS |
| GCAAAGCCCCGTAACGATGT+CGG | 0.557511 | 4:-1606053 | None:intergenic |
| GCTTCCACTTCCCATGCTTG+AGG | 0.557562 | 4:+1607374 | MsG0480018208.01.T01:CDS |
| TGCAGACACATATCTCATAG+AGG | 0.558309 | 4:-1607039 | None:intergenic |
| CACTCCCGCTTCTAGAGTCA+AGG | 0.561069 | 4:+1606704 | MsG0480018208.01.T01:CDS |
| ACATATCTCATAGAGGGGTA+AGG | 0.561119 | 4:-1607032 | None:intergenic |
| TGGGAGTAGAGGCAAAGGCC+TGG | 0.564150 | 4:-1607072 | None:intergenic |
| AGAGTCGGGAGAAGCATCAG+TGG | 0.564445 | 4:+1607132 | MsG0480018208.01.T01:CDS |
| GCATACCAATCTCCTCAGCT+TGG | 0.565430 | 4:-1607010 | None:intergenic |
| TGTGAAATAGACCAATTCTC+CGG | 0.567161 | 4:-1606642 | None:intergenic |
| CAAGAATAAGCCTCTAGAGT+AGG | 0.568558 | 4:-1606180 | None:intergenic |
| AGGATGCTCAAGCCCCGCGA+AGG | 0.568678 | 4:-1606235 | None:intergenic |
| GCAGACACATATCTCATAGA+GGG | 0.570059 | 4:-1607038 | None:intergenic |
| TTGGCAATAACCAAAGAAGT+AGG | 0.570545 | 4:-1606258 | None:intergenic |
| GGGTTTATCTATTGCTAAGG+GGG | 0.574107 | 4:+1606209 | MsG0480018208.01.T01:CDS |
| GGTTGTAAGATGGAGATCCT+TGG | 0.575219 | 4:-1606277 | None:intergenic |
| ATTTCCTTGACTCTAGAAGC+GGG | 0.576966 | 4:-1606708 | None:intergenic |
| GTCCAAGCTTCGGAAGAAAG+AGG | 0.577189 | 4:+1606926 | MsG0480018208.01.T01:CDS |
| GTATCAGGAGCATTTAGCTA+TGG | 0.578172 | 4:+1607109 | MsG0480018208.01.T01:CDS |
| AGGAAATCATCTTTGGTGGT+GGG | 0.578271 | 4:+1606724 | MsG0480018208.01.T01:CDS |
| CCTCTTCTTGGTACCCGGGG+TGG | 0.586370 | 4:+1606762 | MsG0480018208.01.T01:CDS |
| CTCAAGAGTGTCCTGACAAG+TGG | 0.587573 | 4:-1606385 | None:intergenic |
| TCCTGGGTAGGTGGGAGTAG+AGG | 0.588090 | 4:-1607083 | None:intergenic |
| GTCGGGAGAAGCATCAGTGG+AGG | 0.589135 | 4:+1607135 | MsG0480018208.01.T01:CDS |
| CTCAAGGTTGAGGATCCGAC+TGG | 0.589466 | 4:+1606027 | MsG0480018208.01.T01:CDS |
| AGTATCGTGCATAGAAGTCA+CGG | 0.592453 | 4:-1607322 | None:intergenic |
| GTGTGCCTCTCCTCTATAGG+TGG | 0.593396 | 4:+1606583 | MsG0480018208.01.T01:CDS |
| GTGGAGGGCTAGATACTATG+AGG | 0.594229 | 4:+1607151 | MsG0480018208.01.T01:CDS |
| GGATGCTCAAGCCCCGCGAA+GGG | 0.596283 | 4:-1606234 | None:intergenic |
| AGTAGAGGCAAAGGCCTGGT+AGG | 0.597506 | 4:-1607068 | None:intergenic |
| TCCTGATACATCTCCTGGGT+AGG | 0.598828 | 4:-1607095 | None:intergenic |
| ACCAATTCTCCGGATTGTCG+TGG | 0.598960 | 4:-1606632 | None:intergenic |
| GATCATGACTTTGGATGGAA+AGG | 0.599743 | 4:+1607184 | MsG0480018208.01.T01:CDS |
| GCAATAACCAAAGAAGTAGG+AGG | 0.599926 | 4:-1606255 | None:intergenic |
| GAAACCCTCCCTAATTCCTG+TGG | 0.601054 | 4:-1606892 | None:intergenic |
| AGAGACTCCAAGAGGGCTAG+GGG | 0.601078 | 4:+1607296 | MsG0480018208.01.T01:CDS |
| CAGCTATGAGTCTGAGTCTG+AGG | 0.601252 | 4:+1607346 | MsG0480018208.01.T01:CDS |
| TGTCCTGACAAGTGGTATTG+AGG | 0.601784 | 4:-1606377 | None:intergenic |
| TGTCGTGGAAAGACTTCGGA+AGG | 0.604879 | 4:-1606617 | None:intergenic |
| AAGGTCCGGTATTGCTCATG+AGG | 0.605540 | 4:+1606965 | MsG0480018208.01.T01:CDS |
| TCGGGAGAAGCATCAGTGGA+GGG | 0.607708 | 4:+1607136 | MsG0480018208.01.T01:CDS |
| TAGGCACCAACTGAAAGTCT+GGG | 0.608081 | 4:-1606161 | None:intergenic |
| GATTTCCTTGACTCTAGAAG+CGG | 0.610412 | 4:-1606709 | None:intergenic |
| AATTCTATGATCAGAAGTAT+CGG | 0.612055 | 4:+1606127 | MsG0480018208.01.T01:CDS |
| CCACCCCGGGTACCAAGAAG+AGG | 0.614269 | 4:-1606762 | None:intergenic |
| ACTGAAGAAAGAGTTAGCTA+AGG | 0.614736 | 4:+1607235 | MsG0480018208.01.T01:CDS |
| AGAGAATAAACCCATAGATG+AGG | 0.614859 | 4:-1606422 | None:intergenic |
| TATACTCTGAAGTGAACCCT+CGG | 0.615311 | 4:-1606338 | None:intergenic |
| GGATGAGCAGCAGACTCATG+AGG | 0.624523 | 4:+1607205 | MsG0480018208.01.T01:CDS |
| ATGCTCCTGATACATCTCCT+GGG | 0.624675 | 4:-1607099 | None:intergenic |
| TAACGATGTCGGAAACCAGT+CGG | 0.625510 | 4:-1606042 | None:intergenic |
| TCATGAGGCTTATACACAGT+GGG | 0.627203 | 4:+1606980 | MsG0480018208.01.T01:CDS |
| GTATCGTGCATAGAAGTCAC+GGG | 0.630427 | 4:-1607321 | None:intergenic |
| AAACCCTCCCTAATTCCTGT+GGG | 0.633258 | 4:-1606891 | None:intergenic |
| GTACCTCTTCTTGGTACCCG+GGG | 0.633568 | 4:+1606759 | MsG0480018208.01.T01:CDS |
| CACTTGTCAGGACACTCTTG+AGG | 0.634588 | 4:+1606386 | MsG0480018208.01.T01:CDS |
| TCACTAAGGCACGTATCCGA+GGG | 0.637895 | 4:+1606322 | MsG0480018208.01.T01:CDS |
| TGCTCCCACAGGAATTAGGG+AGG | 0.642920 | 4:+1606887 | MsG0480018208.01.T01:CDS |
| GGATTGTCGTGGAAAGACTT+CGG | 0.643124 | 4:-1606621 | None:intergenic |
| GTAGGTGGGAGTAGAGGCAA+AGG | 0.643195 | 4:-1607077 | None:intergenic |
| GCTCCCACAGGAATTAGGGA+GGG | 0.643904 | 4:+1606888 | MsG0480018208.01.T01:CDS |
| GGTTATAGTTGATTCCACCC+CGG | 0.646112 | 4:-1606776 | None:intergenic |
| TGGTTTCCGACATCGTTACG+GGG | 0.646287 | 4:+1606047 | MsG0480018208.01.T01:CDS |
| CGGAACGATCGTGAATAGCA+TGG | 0.648248 | 4:-1606533 | None:intergenic |
| GGGTGGAATCAACTATAACC+CGG | 0.649516 | 4:+1606779 | MsG0480018208.01.T01:CDS |
| TGGGTTTATCTATTGCTAAG+GGG | 0.654847 | 4:+1606208 | MsG0480018208.01.T01:CDS |
| GAGCCAAACCACTTCATTAG+GGG | 0.666408 | 4:-1606682 | None:intergenic |
| TGCTTATGAGAGACTCCAAG+AGG | 0.679549 | 4:+1607288 | MsG0480018208.01.T01:CDS |
| GTGGGTGATAAACCAAGCTG+AGG | 0.679807 | 4:+1606998 | MsG0480018208.01.T01:CDS |
| ATAAACCACCTATAGAGGAG+AGG | 0.682178 | 4:-1606588 | None:intergenic |
| GCTTATGAGAGACTCCAAGA+GGG | 0.688934 | 4:+1607289 | MsG0480018208.01.T01:CDS |
| CAGACACATATCTCATAGAG+GGG | 0.700087 | 4:-1607037 | None:intergenic |
| CTCATGAGGCTTATACACAG+TGG | 0.710700 | 4:+1606979 | MsG0480018208.01.T01:CDS |
| AGAATTGGTCTATTTCACAG+AGG | 0.721523 | 4:+1606646 | MsG0480018208.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TTCTATTCTTCATACTAATG+TGG | + | Chr4:1606077-1606096 | MsG0480018208.01.T01:CDS | 25.0% |
| !! | AATTCTATGATCAGAAGTAT+CGG | + | Chr4:1606127-1606146 | MsG0480018208.01.T01:CDS | 25.0% |
| ATGGGTTTATCTATTGCTAA+GGG | + | Chr4:1606207-1606226 | MsG0480018208.01.T01:CDS | 30.0% | |
| TCACTTCAGAGTATATTCTT+GGG | + | Chr4:1606346-1606365 | MsG0480018208.01.T01:CDS | 30.0% | |
| TTCACTTCAGAGTATATTCT+TGG | + | Chr4:1606345-1606364 | MsG0480018208.01.T01:CDS | 30.0% | |
| TTTCTTAATGTACCTCTTCT+TGG | + | Chr4:1606750-1606769 | MsG0480018208.01.T01:CDS | 30.0% | |
| AACTTGATCATGACTTTGGA+TGG | + | Chr4:1607179-1607198 | MsG0480018208.01.T01:CDS | 35.0% | |
| AAGAAAGAGGTGAAGCATAT+GGG | + | Chr4:1606939-1606958 | MsG0480018208.01.T01:CDS | 35.0% | |
| ACTGAAGAAAGAGTTAGCTA+AGG | + | Chr4:1607235-1607254 | MsG0480018208.01.T01:CDS | 35.0% | |
| AGAGAATAAACCCATAGATG+AGG | - | Chr4:1606425-1606444 | None:intergenic | 35.0% | |
| AGAGTCAAGGAAATCATCTT+TGG | + | Chr4:1606717-1606736 | MsG0480018208.01.T01:CDS | 35.0% | |
| ATCCACTTCCTTGAATTTGT+AGG | - | Chr4:1605983-1606002 | None:intergenic | 35.0% | |
| CTCCAAAAATCTTGTCACTA+AGG | + | Chr4:1606308-1606327 | MsG0480018208.01.T01:CDS | 35.0% | |
| CTTGGAATGGAAGATCATAA+TGG | - | Chr4:1606481-1606500 | None:intergenic | 35.0% | |
| GACTAAGTCCTACAAATTCA+AGG | + | Chr4:1605972-1605991 | MsG0480018208.01.T01:CDS | 35.0% | |
| GTCTATTTCACAGAGGATTA+TGG | + | Chr4:1606653-1606672 | MsG0480018208.01.T01:CDS | 35.0% | |
| TACTTCTTTGGTTATTGCCA+AGG | + | Chr4:1606260-1606279 | MsG0480018208.01.T01:CDS | 35.0% | |
| TGAGAACTTGATCATGACTT+TGG | + | Chr4:1607175-1607194 | MsG0480018208.01.T01:CDS | 35.0% | |
| TGGGTTTATCTATTGCTAAG+GGG | + | Chr4:1606208-1606227 | MsG0480018208.01.T01:CDS | 35.0% | |
| TGTGAAATAGACCAATTCTC+CGG | - | Chr4:1606645-1606664 | None:intergenic | 35.0% | |
| TTGGAGTAGTGAAAGAAGTA+AGG | - | Chr4:1606867-1606886 | None:intergenic | 35.0% | |
| TTGGCAATAACCAAAGAAGT+AGG | - | Chr4:1606261-1606280 | None:intergenic | 35.0% | |
| ! | AGAATTGGTCTATTTCACAG+AGG | + | Chr4:1606646-1606665 | MsG0480018208.01.T01:CDS | 35.0% |
| ! | CAAATTCAAGGAAGTGGATT+TGG | + | Chr4:1605984-1606003 | MsG0480018208.01.T01:CDS | 35.0% |
| ! | GATGGGTTTATCTATTGCTA+AGG | + | Chr4:1606206-1606225 | MsG0480018208.01.T01:CDS | 35.0% |
| ! | TGCCTTAGTGACAAGATTTT+TGG | - | Chr4:1606313-1606332 | None:intergenic | 35.0% |
| !! | GACAAGATTTTTGGAGACAT+CGG | - | Chr4:1606304-1606323 | None:intergenic | 35.0% |
| !! | TTGATGGGCTTATCTTTCAT+CGG | - | Chr4:1606831-1606850 | None:intergenic | 35.0% |
| !! | TTTGGCTAGTTTGAGAGATT+TGG | + | Chr4:1606002-1606021 | MsG0480018208.01.T01:CDS | 35.0% |
| AAGGAAATCATCTTTGGTGG+TGG | + | Chr4:1606723-1606742 | MsG0480018208.01.T01:CDS | 40.0% | |
| AATATATCCACGACCTTTGC+CGG | - | Chr4:1606556-1606575 | None:intergenic | 40.0% | |
| ACATATCTCATAGAGGGGTA+AGG | - | Chr4:1607035-1607054 | None:intergenic | 40.0% | |
| AGAGGCTTATTCTTGCTTGA+TGG | + | Chr4:1606188-1606207 | MsG0480018208.01.T01:CDS | 40.0% | |
| AGCATTTAGCTATGGAGAGT+CGG | + | Chr4:1607117-1607136 | MsG0480018208.01.T01:CDS | 40.0% | |
| AGTATCGTGCATAGAAGTCA+CGG | - | Chr4:1607325-1607344 | None:intergenic | 40.0% | |
| ATAAACCAAGCTGAGGAGAT+TGG | + | Chr4:1607005-1607024 | MsG0480018208.01.T01:CDS | 40.0% | |
| ATAAACCACCTATAGAGGAG+AGG | - | Chr4:1606591-1606610 | None:intergenic | 40.0% | |
| ATAAGCCTCATGAGCAATAC+CGG | - | Chr4:1606973-1606992 | None:intergenic | 40.0% | |
| ATTCTTGCACTCCTCATCTA+TGG | + | Chr4:1606411-1606430 | MsG0480018208.01.T01:CDS | 40.0% | |
| CAGACACATATCTCATAGAG+GGG | - | Chr4:1607040-1607059 | None:intergenic | 40.0% | |
| GAAGAAAGAGGTGAAGCATA+TGG | + | Chr4:1606938-1606957 | MsG0480018208.01.T01:CDS | 40.0% | |
| GAGGCTTATTCTTGCTTGAT+GGG | + | Chr4:1606189-1606208 | MsG0480018208.01.T01:CDS | 40.0% | |
| GATCATGACTTTGGATGGAA+AGG | + | Chr4:1607184-1607203 | MsG0480018208.01.T01:CDS | 40.0% | |
| GATCTTCCATTCCAAGAATC+CGG | + | Chr4:1606485-1606504 | MsG0480018208.01.T01:CDS | 40.0% | |
| GCAATAACCAAAGAAGTAGG+AGG | - | Chr4:1606258-1606277 | None:intergenic | 40.0% | |
| GCAGACACATATCTCATAGA+GGG | - | Chr4:1607041-1607060 | None:intergenic | 40.0% | |
| GCGAAATAAACCACCTATAG+AGG | - | Chr4:1606596-1606615 | None:intergenic | 40.0% | |
| GGGTTTATCTATTGCTAAGG+GGG | + | Chr4:1606209-1606228 | MsG0480018208.01.T01:CDS | 40.0% | |
| GTCAAGGAAATCATCTTTGG+TGG | + | Chr4:1606720-1606739 | MsG0480018208.01.T01:CDS | 40.0% | |
| GTCCTACAAATTCAAGGAAG+TGG | + | Chr4:1605978-1605997 | MsG0480018208.01.T01:CDS | 40.0% | |
| TAAGGCTAAGAGAGAGATTG+AGG | + | Chr4:1607253-1607272 | MsG0480018208.01.T01:CDS | 40.0% | |
| TACTTTCCCAGACTTTCAGT+TGG | + | Chr4:1606155-1606174 | MsG0480018208.01.T01:CDS | 40.0% | |
| TATGTGTCAGCTAGCAAAGT+AGG | - | Chr4:1606513-1606532 | None:intergenic | 40.0% | |
| TCATGAGGCTTATACACAGT+GGG | + | Chr4:1606980-1606999 | MsG0480018208.01.T01:CDS | 40.0% | |
| TCCACGAAGTCATCAAGATT+TGG | - | Chr4:1606450-1606469 | None:intergenic | 40.0% | |
| TGAGCCAAACCACTTCATTA+GGG | - | Chr4:1606686-1606705 | None:intergenic | 40.0% | |
| TGCAGACACATATCTCATAG+AGG | - | Chr4:1607042-1607061 | None:intergenic | 40.0% | |
| TTCTTGCACTCCTCATCTAT+GGG | + | Chr4:1606412-1606431 | MsG0480018208.01.T01:CDS | 40.0% | |
| TTTGAGAGATTTGGCACTCA+AGG | + | Chr4:1606011-1606030 | MsG0480018208.01.T01:CDS | 40.0% | |
| ! | AGGAAATCATCTTTGGTGGT+GGG | + | Chr4:1606724-1606743 | MsG0480018208.01.T01:CDS | 40.0% |
| ! | ATTTCCTTGACTCTAGAAGC+GGG | - | Chr4:1606711-1606730 | None:intergenic | 40.0% |
| ! | GATTTCCTTGACTCTAGAAG+CGG | - | Chr4:1606712-1606731 | None:intergenic | 40.0% |
| ! | TCCAAATCTTGATGACTTCG+TGG | + | Chr4:1606446-1606465 | MsG0480018208.01.T01:CDS | 40.0% |
| !! | AAGATTTTTGGAGACATCGG+AGG | - | Chr4:1606301-1606320 | None:intergenic | 40.0% |
| !! | CAAGAATAAGCCTCTAGAGT+AGG | - | Chr4:1606183-1606202 | None:intergenic | 40.0% |
| !! | GTATCAGGAGCATTTAGCTA+TGG | + | Chr4:1607109-1607128 | MsG0480018208.01.T01:CDS | 40.0% |
| !! | TATACTCTGAAGTGAACCCT+CGG | - | Chr4:1606341-1606360 | None:intergenic | 40.0% |
| !! | TGATGGGCTTATCTTTCATC+GGG | - | Chr4:1606830-1606849 | None:intergenic | 40.0% |
| AAACCCTCCCTAATTCCTGT+GGG | - | Chr4:1606894-1606913 | None:intergenic | 45.0% | |
| AAGCATATGGGTGTAAGGTC+CGG | + | Chr4:1606951-1606970 | MsG0480018208.01.T01:CDS | 45.0% | |
| AATGCTCCTGATACATCTCC+TGG | - | Chr4:1607103-1607122 | None:intergenic | 45.0% | |
| AATTGTCGCAAAGCGAGATC+CGG | - | Chr4:1606801-1606820 | None:intergenic | 45.0% | |
| AGACATCGGAGGTTGTAAGA+TGG | - | Chr4:1606290-1606309 | None:intergenic | 45.0% | |
| AGATTTGGCACTCAAGGTTG+AGG | + | Chr4:1606017-1606036 | MsG0480018208.01.T01:CDS | 45.0% | |
| AGGAATTAGGGAGGGTTTCA+TGG | + | Chr4:1606896-1606915 | MsG0480018208.01.T01:CDS | 45.0% | |
| AGGAGCTGTAGCAAGATTGA+TGG | - | Chr4:1606847-1606866 | None:intergenic | 45.0% | |
| AGGTGAAGCATATGGGTGTA+AGG | + | Chr4:1606946-1606965 | MsG0480018208.01.T01:CDS | 45.0% | |
| ATGCTCCTGATACATCTCCT+GGG | - | Chr4:1607102-1607121 | None:intergenic | 45.0% | |
| ATGTACCTCTTCTTGGTACC+CGG | + | Chr4:1606757-1606776 | MsG0480018208.01.T01:CDS | 45.0% | |
| CAAAGTAGGAACCGGATTCT+TGG | - | Chr4:1606499-1606518 | None:intergenic | 45.0% | |
| CAACCTCAATACCACTTGTC+AGG | + | Chr4:1606374-1606393 | MsG0480018208.01.T01:CDS | 45.0% | |
| CAATGCTCCCACAGGAATTA+GGG | + | Chr4:1606884-1606903 | MsG0480018208.01.T01:CDS | 45.0% | |
| CATGCTATTCACGATCGTTC+CGG | + | Chr4:1606534-1606553 | MsG0480018208.01.T01:CDS | 45.0% | |
| CTCATGAGGCTTATACACAG+TGG | + | Chr4:1606979-1606998 | MsG0480018208.01.T01:CDS | 45.0% | |
| GAAGTCTTTCCACGACAATC+CGG | + | Chr4:1606623-1606642 | MsG0480018208.01.T01:CDS | 45.0% | |
| GAGCCAAACCACTTCATTAG+GGG | - | Chr4:1606685-1606704 | None:intergenic | 45.0% | |
| GATCTCGCTTTGCGACAATT+TGG | + | Chr4:1606801-1606820 | MsG0480018208.01.T01:CDS | 45.0% | |
| GCATTTAGCTATGGAGAGTC+GGG | + | Chr4:1607118-1607137 | MsG0480018208.01.T01:CDS | 45.0% | |
| GCTTATGAGAGACTCCAAGA+GGG | + | Chr4:1607289-1607308 | MsG0480018208.01.T01:CDS | 45.0% | |
| GGAGCTGTAGCAAGATTGAT+GGG | - | Chr4:1606846-1606865 | None:intergenic | 45.0% | |
| GGATTGTCGTGGAAAGACTT+CGG | - | Chr4:1606624-1606643 | None:intergenic | 45.0% | |
| GGGTGGAATCAACTATAACC+CGG | + | Chr4:1606779-1606798 | MsG0480018208.01.T01:CDS | 45.0% | |
| GGTTGTAAGATGGAGATCCT+TGG | - | Chr4:1606280-1606299 | None:intergenic | 45.0% | |
| GTATCGTGCATAGAAGTCAC+GGG | - | Chr4:1607324-1607343 | None:intergenic | 45.0% | |
| GTGAGCCAAACCACTTCATT+AGG | - | Chr4:1606687-1606706 | None:intergenic | 45.0% | |
| TAACGATGTCGGAAACCAGT+CGG | - | Chr4:1606045-1606064 | None:intergenic | 45.0% | |
| TAGGAACCGGATTCTTGGAA+TGG | - | Chr4:1606494-1606513 | None:intergenic | 45.0% | |
| TAGGCACCAACTGAAAGTCT+GGG | - | Chr4:1606164-1606183 | None:intergenic | 45.0% | |
| TCACCCCTAATGAAGTGGTT+TGG | + | Chr4:1606679-1606698 | MsG0480018208.01.T01:CDS | 45.0% | |
| TCAGCTAGCAAAGTAGGAAC+CGG | - | Chr4:1606507-1606526 | None:intergenic | 45.0% | |
| TGAGCATCCTCCTACTTCTT+TGG | + | Chr4:1606248-1606267 | MsG0480018208.01.T01:CDS | 45.0% | |
| TGCTTATGAGAGACTCCAAG+AGG | + | Chr4:1607288-1607307 | MsG0480018208.01.T01:CDS | 45.0% | |
| TGTCCTGACAAGTGGTATTG+AGG | - | Chr4:1606380-1606399 | None:intergenic | 45.0% | |
| ! | ACTGGTTTCCGACATCGTTA+CGG | + | Chr4:1606045-1606064 | MsG0480018208.01.T01:CDS | 45.0% |
| ! | CTGACAAGTGGTATTGAGGT+TGG | - | Chr4:1606376-1606395 | None:intergenic | 45.0% |
| ! | GGTTATAGTTGATTCCACCC+CGG | - | Chr4:1606779-1606798 | None:intergenic | 45.0% |
| ! | GTTATAGTTGATTCCACCCC+GGG | - | Chr4:1606778-1606797 | None:intergenic | 45.0% |
| AAGGTCCGGTATTGCTCATG+AGG | + | Chr4:1606965-1606984 | MsG0480018208.01.T01:CDS | 50.0% | |
| ACCAATTCTCCGGATTGTCG+TGG | - | Chr4:1606635-1606654 | None:intergenic | 50.0% | |
| ACCTACCCAGGAGATGTATC+AGG | + | Chr4:1607094-1607113 | MsG0480018208.01.T01:CDS | 50.0% | |
| ATTCACGATCGTTCCGGCAA+AGG | + | Chr4:1606540-1606559 | MsG0480018208.01.T01:CDS | 50.0% | |
| ATTGTCGCAAAGCGAGATCC+GGG | - | Chr4:1606800-1606819 | None:intergenic | 50.0% | |
| CACCTCTTTCTTCCGAAGCT+TGG | - | Chr4:1606931-1606950 | None:intergenic | 50.0% | |
| CACTTGTCAGGACACTCTTG+AGG | + | Chr4:1606386-1606405 | MsG0480018208.01.T01:CDS | 50.0% | |
| CAGCTATGAGTCTGAGTCTG+AGG | + | Chr4:1607346-1607365 | MsG0480018208.01.T01:CDS | 50.0% | |
| CCAATGCTCCCACAGGAATT+AGG | + | Chr4:1606883-1606902 | MsG0480018208.01.T01:CDS | 50.0% | |
| CGGAACGATCGTGAATAGCA+TGG | - | Chr4:1606536-1606555 | None:intergenic | 50.0% | |
| CTGGTTTCCGACATCGTTAC+GGG | + | Chr4:1606046-1606065 | MsG0480018208.01.T01:CDS | 50.0% | |
| GAAACCCTCCCTAATTCCTG+TGG | - | Chr4:1606895-1606914 | None:intergenic | 50.0% | |
| GATACATCTCCTGGGTAGGT+GGG | - | Chr4:1607094-1607113 | None:intergenic | 50.0% | |
| GCATACCAATCTCCTCAGCT+TGG | - | Chr4:1607013-1607032 | None:intergenic | 50.0% | |
| GTAGGCACCAACTGAAAGTC+TGG | - | Chr4:1606165-1606184 | None:intergenic | 50.0% | |
| GTCCAAGCTTCGGAAGAAAG+AGG | + | Chr4:1606926-1606945 | MsG0480018208.01.T01:CDS | 50.0% | |
| GTGGAGGGCTAGATACTATG+AGG | + | Chr4:1607151-1607170 | MsG0480018208.01.T01:CDS | 50.0% | |
| GTGGGTGATAAACCAAGCTG+AGG | + | Chr4:1606998-1607017 | MsG0480018208.01.T01:CDS | 50.0% | |
| GTTGTGTGCCTCTCCTCTAT+AGG | + | Chr4:1606580-1606599 | MsG0480018208.01.T01:CDS | 50.0% | |
| TCACTAAGGCACGTATCCGA+GGG | + | Chr4:1606322-1606341 | MsG0480018208.01.T01:CDS | 50.0% | |
| TCCACGACAATCCGGAGAAT+TGG | + | Chr4:1606631-1606650 | MsG0480018208.01.T01:CDS | 50.0% | |
| TCCTGATACATCTCCTGGGT+AGG | - | Chr4:1607098-1607117 | None:intergenic | 50.0% | |
| TGATACATCTCCTGGGTAGG+TGG | - | Chr4:1607095-1607114 | None:intergenic | 50.0% | |
| TGGAAGCTTGGTCCAAGCTT+CGG | + | Chr4:1606916-1606935 | MsG0480018208.01.T01:CDS | 50.0% | |
| TGGTTTCCGACATCGTTACG+GGG | + | Chr4:1606047-1606066 | MsG0480018208.01.T01:CDS | 50.0% | |
| TGTACCTCTTCTTGGTACCC+GGG | + | Chr4:1606758-1606777 | MsG0480018208.01.T01:CDS | 50.0% | |
| TGTCGTGGAAAGACTTCGGA+AGG | - | Chr4:1606620-1606639 | None:intergenic | 50.0% | |
| TGTCTGCATCTGTTCCTACC+AGG | + | Chr4:1607054-1607073 | MsG0480018208.01.T01:CDS | 50.0% | |
| ! | CCTAATTCCTGTGGGAGCAT+TGG | - | Chr4:1606886-1606905 | None:intergenic | 50.0% |
| ! | TCAGTTGGTGCCTACTCTAG+AGG | + | Chr4:1606170-1606189 | MsG0480018208.01.T01:CDS | 50.0% |
| !! | CTCAAGAGTGTCCTGACAAG+TGG | - | Chr4:1606388-1606407 | None:intergenic | 50.0% |
| AGAGACTCCAAGAGGGCTAG+GGG | + | Chr4:1607296-1607315 | MsG0480018208.01.T01:CDS | 55.0% | |
| AGTAGAGGCAAAGGCCTGGT+AGG | - | Chr4:1607071-1607090 | None:intergenic | 55.0% | |
| CACTACTCCAATGCTCCCAC+AGG | + | Chr4:1606876-1606895 | MsG0480018208.01.T01:CDS | 55.0% | |
| CTCAAGGTTGAGGATCCGAC+TGG | + | Chr4:1606027-1606046 | MsG0480018208.01.T01:CDS | 55.0% | |
| GAGAGACTCCAAGAGGGCTA+GGG | + | Chr4:1607295-1607314 | MsG0480018208.01.T01:CDS | 55.0% | |
| GCAAAGCCCCGTAACGATGT+CGG | - | Chr4:1606056-1606075 | None:intergenic | 55.0% | |
| GCTCCCACAGGAATTAGGGA+GGG | + | Chr4:1606888-1606907 | MsG0480018208.01.T01:CDS | 55.0% | |
| GGATGAGCAGCAGACTCATG+AGG | + | Chr4:1607205-1607224 | MsG0480018208.01.T01:CDS | 55.0% | |
| GGCTCTCACCCCTAATGAAG+TGG | + | Chr4:1606674-1606693 | MsG0480018208.01.T01:CDS | 55.0% | |
| GGGAGGGTTTCATGGAAGCT+TGG | + | Chr4:1606904-1606923 | MsG0480018208.01.T01:CDS | 55.0% | |
| GTACCTCTTCTTGGTACCCG+GGG | + | Chr4:1606759-1606778 | MsG0480018208.01.T01:CDS | 55.0% | |
| GTAGGTGGGAGTAGAGGCAA+AGG | - | Chr4:1607080-1607099 | None:intergenic | 55.0% | |
| GTCACTAAGGCACGTATCCG+AGG | + | Chr4:1606321-1606340 | MsG0480018208.01.T01:CDS | 55.0% | |
| GTGTGCCTCTCCTCTATAGG+TGG | + | Chr4:1606583-1606602 | MsG0480018208.01.T01:CDS | 55.0% | |
| TGAGAGACTCCAAGAGGGCT+AGG | + | Chr4:1607294-1607313 | MsG0480018208.01.T01:CDS | 55.0% | |
| TGCTCCCACAGGAATTAGGG+AGG | + | Chr4:1606887-1606906 | MsG0480018208.01.T01:CDS | 55.0% | |
| !! | AGAGTCGGGAGAAGCATCAG+TGG | + | Chr4:1607132-1607151 | MsG0480018208.01.T01:CDS | 55.0% |
| !! | CACTCCCGCTTCTAGAGTCA+AGG | + | Chr4:1606704-1606723 | MsG0480018208.01.T01:CDS | 55.0% |
| !! | TCGGGAGAAGCATCAGTGGA+GGG | + | Chr4:1607136-1607155 | MsG0480018208.01.T01:CDS | 55.0% |
| GATCGTTCCGGCAAAGGTCG+TGG | + | Chr4:1606546-1606565 | MsG0480018208.01.T01:CDS | 60.0% | |
| TCCTGGGTAGGTGGGAGTAG+AGG | - | Chr4:1607086-1607105 | None:intergenic | 60.0% | |
| TGGGAGTAGAGGCAAAGGCC+TGG | - | Chr4:1607075-1607094 | None:intergenic | 60.0% | |
| !! | GTCGGGAGAAGCATCAGTGG+AGG | + | Chr4:1607135-1607154 | MsG0480018208.01.T01:CDS | 60.0% |
| !! | TGCTAAGGGGGTACCCTTCG+CGG | + | Chr4:1606221-1606240 | MsG0480018208.01.T01:CDS | 60.0% |
| AGGATGCTCAAGCCCCGCGA+AGG | - | Chr4:1606238-1606257 | None:intergenic | 65.0% | |
| CCACCCCGGGTACCAAGAAG+AGG | - | Chr4:1606765-1606784 | None:intergenic | 65.0% | |
| CCTCTTCTTGGTACCCGGGG+TGG | + | Chr4:1606762-1606781 | MsG0480018208.01.T01:CDS | 65.0% | |
| GCCTCTACTCCCACCTACCC+AGG | + | Chr4:1607082-1607101 | MsG0480018208.01.T01:CDS | 65.0% | |
| GGATGCTCAAGCCCCGCGAA+GGG | - | Chr4:1606237-1606256 | None:intergenic | 65.0% | |
| !! | CTAAGGGGGTACCCTTCGCG+GGG | + | Chr4:1606223-1606242 | MsG0480018208.01.T01:CDS | 65.0% |
| !! | GCTAAGGGGGTACCCTTCGC+GGG | + | Chr4:1606222-1606241 | MsG0480018208.01.T01:CDS | 65.0% |
| ACGGGCACCCCTAGCCCTCT+TGG | - | Chr4:1607306-1607325 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 1605964 | 1607394 | 1605964 | ID=MsG0480018208.01;Name=MsG0480018208.01 |
| Chr4 | mRNA | 1605964 | 1607394 | 1605964 | ID=MsG0480018208.01.T01;Parent=MsG0480018208.01;Name=MsG0480018208.01.T01;_AED=0.43;_eAED=0.43;_QI=0|-1|0|1|-1|1|1|0|476 |
| Chr4 | exon | 1605964 | 1607394 | 1605964 | ID=MsG0480018208.01.T01:exon:554;Parent=MsG0480018208.01.T01 |
| Chr4 | CDS | 1605964 | 1607394 | 1605964 | ID=MsG0480018208.01.T01:cds;Parent=MsG0480018208.01.T01 |
| Gene Sequence |
| Protein sequence |
