AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006325.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006325.01.T01 MTR_2g005960 54.472 246 22 5 20 218 6 208 4.51e-75 226
MsG0280006325.01.T01 MTR_7g089080 43.333 90 46 3 132 218 183 270 1.05e-13 70.1
MsG0280006325.01.T01 MTR_5g088980 36.458 96 56 3 127 219 144 237 1.46e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006325.01.T01 AT4G37490 29.680 219 126 6 27 219 21 237 2.42e-15 74.3
MsG0280006325.01.T01 AT3G11520 28.311 219 120 7 29 218 20 230 2.73e-15 74.3
MsG0280006325.01.T01 AT3G11520 28.311 219 120 7 29 218 20 230 2.80e-15 74.3
MsG0280006325.01.T01 AT5G06150 29.075 227 114 9 35 218 31 253 1.38e-14 72.0
MsG0280006325.01.T01 AT5G06150 29.075 227 114 9 35 218 31 253 2.61e-14 71.6
MsG0280006325.01.T01 AT1G34460 29.358 218 99 8 37 218 145 343 5.58e-14 70.5
MsG0280006325.01.T01 AT1G34460 29.358 218 99 8 37 218 145 343 5.58e-14 70.5
MsG0280006325.01.T01 AT1G34460 29.358 218 99 8 37 218 145 343 5.58e-14 70.5
MsG0280006325.01.T01 AT1G34460 29.358 218 99 8 37 218 145 343 5.58e-14 70.5
MsG0280006325.01.T01 AT1G34460 31.373 204 113 9 37 218 145 343 5.67e-14 70.5
MsG0280006325.01.T01 AT1G34460 31.373 204 113 9 37 218 145 343 5.76e-14 70.5
MsG0280006325.01.T01 AT1G34460 31.373 204 113 9 37 218 131 329 6.46e-14 70.5
MsG0280006325.01.T01 AT2G26760 44.318 88 44 3 132 216 114 199 7.44e-14 70.1
MsG0280006325.01.T01 AT1G34460 30.732 205 110 9 37 218 145 340 1.45e-13 69.3
MsG0280006325.01.T01 AT1G34460 30.732 205 110 9 37 218 145 340 1.45e-13 69.3
MsG0280006325.01.T01 AT1G76310 37.615 109 62 3 109 213 138 244 1.54e-11 63.5
MsG0280006325.01.T01 AT1G76310 37.615 109 62 3 109 213 138 244 1.64e-11 63.5
MsG0280006325.01.T01 AT1G76310 37.615 109 62 3 109 213 138 244 1.68e-11 63.2
MsG0280006325.01.T01 AT1G76310 37.615 109 62 3 109 213 138 244 2.06e-11 62.8

Find 46 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGATGCTATTAATAATT+TGG 0.165741 2:-442601 MsG0280006325.01.T01:CDS
TTAGCTGGCACTTCTAATTC+TGG 0.308253 2:+443345 None:intergenic
CACTAACATCAGATCTCTTT+AGG 0.324792 2:+442270 None:intergenic
TCTGCAATTCAAGACGATAA+TGG 0.378719 2:+442358 None:intergenic
AGAGGTGGCCATCAAGTTCT+TGG 0.398498 2:-443654 MsG0280006325.01.T01:CDS
GTTTGACGCTCAACTATGAT+TGG 0.400347 2:+446229 None:intergenic
CGATATCTCCAAGAACTTGA+TGG 0.417687 2:+443646 None:intergenic
TTTCTTGCAGGGAGAGATAA+GGG 0.418838 2:-443693 MsG0280006325.01.T01:intron
ATGTCAACAGTCTGATCCTT+GGG 0.430682 2:+443018 None:intergenic
ATGTCAACATCATGATTCTC+TGG 0.433621 2:+442630 None:intergenic
AGATGATGCTATTAATAATA+TGG 0.435281 2:-442989 MsG0280006325.01.T01:CDS
ATCATAGTTGAGCGTCAAAC+AGG 0.445609 2:-446226 MsG0280006325.01.T01:CDS
CATCAAGTTCTTGGAGATAT+CGG 0.449503 2:-443645 MsG0280006325.01.T01:CDS
GCACTTCTAATTCTGGTACC+AGG 0.460854 2:+443352 None:intergenic
CATGTCAACAGTCTGATCCT+TGG 0.464984 2:+443017 None:intergenic
AAGAAATCAAAATGTGTATG+AGG 0.469215 2:-442410 MsG0280006325.01.T01:CDS
GGAGATATCGGTAATCTTGA+GGG 0.474467 2:-443633 MsG0280006325.01.T01:CDS
GTTTCTTGCAGGGAGAGATA+AGG 0.481740 2:-443694 MsG0280006325.01.T01:intron
TCCTCTTCGTTTGCAGACCC+TGG 0.504181 2:-443370 MsG0280006325.01.T01:CDS
CACTTCTAATTCTGGTACCA+GGG 0.504441 2:+443353 None:intergenic
GTGTATGAGGATTATTATTG+TGG 0.508172 2:-442397 MsG0280006325.01.T01:CDS
CTGGCTCAAATGTCAAGATC+CGG 0.512046 2:+442649 None:intergenic
TGGAGATATCGGTAATCTTG+AGG 0.517970 2:-443634 MsG0280006325.01.T01:CDS
CCAACTCTTGTTCGAGCCCA+AGG 0.521673 2:-443034 MsG0280006325.01.T01:CDS
GATTATTATTGTGGAATGGT+TGG 0.523494 2:-442388 MsG0280006325.01.T01:CDS
CCTTGGGCTCGAACAAGAGT+TGG 0.532847 2:+443034 None:intergenic
CAAGGATCAGACTGTTGACA+TGG 0.539460 2:-443016 MsG0280006325.01.T01:CDS
AAAATTACAGAACCTTGTGA+TGG 0.541379 2:+443593 None:intergenic
ACGCCTTGGTCATAATTAGC+TGG 0.543546 2:+443330 None:intergenic
CTCTTTAGGTATACTAGTCA+AGG 0.544676 2:+442284 None:intergenic
GAATCAAGTTTCAGACTACA+TGG 0.549031 2:-442442 MsG0280006325.01.T01:CDS
TGAATCAGGTTTGAAATGAA+TGG 0.554219 2:-443393 MsG0280006325.01.T01:intron
TGAGGATTATTATTGTGGAA+TGG 0.566827 2:-442392 MsG0280006325.01.T01:CDS
GATTCTTTAGTACAACGCCT+TGG 0.584480 2:+443316 None:intergenic
GAGAGATAAGGGAAAGCAGA+AGG 0.586551 2:-443682 MsG0280006325.01.T01:CDS
GGAAAGCAGAAGGCAGAAAG+AGG 0.589384 2:-443672 MsG0280006325.01.T01:CDS
AAGCAGAAGGCAGAAAGAGG+TGG 0.604430 2:-443669 MsG0280006325.01.T01:CDS
AAATTACAGAACCTTGTGAT+GGG 0.613242 2:+443594 None:intergenic
GAGATATCGGTAATCTTGAG+GGG 0.639049 2:-443632 MsG0280006325.01.T01:CDS
AGATTTCACGACCCATCACA+AGG 0.642914 2:-443605 MsG0280006325.01.T01:intron
AGAGAATCATGATGTTGACA+TGG 0.645414 2:-442628 MsG0280006325.01.T01:CDS
ACCAGGGTCTGCAAACGAAG+AGG 0.649187 2:+443369 None:intergenic
TAGGTATACTAGTCAAGGAG+AGG 0.650933 2:+442289 None:intergenic
AAGGATCAGACTGTTGACAT+GGG 0.656300 2:-443015 MsG0280006325.01.T01:CDS
GTGCCAGCTAATTATGACCA+AGG 0.665369 2:-443333 MsG0280006325.01.T01:CDS
TCGTCTTGAATTGCAGACAG+AGG 0.683191 2:-442352 MsG0280006325.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATATAATGAAAAAATAAA+AGG + Chr2:446011-446030 None:intergenic 10.0%
!! ATTTGATTCAAAATTTAATT+AGG + Chr2:443940-443959 None:intergenic 10.0%
!!! ATTTATTTTTTTTTGATAGA+AGG - Chr2:443336-443355 MsG0280006325.01.T01:CDS 10.0%
!!! TTTGTCTTTTTATATAAAAT+AGG + Chr2:442376-442395 None:intergenic 10.0%
!!! TTTTATTTTTTCATTATATG+TGG - Chr2:446010-446029 MsG0280006325.01.T01:intron 10.0%
!! AAAAGATGCTATTAATAATT+TGG - Chr2:445933-445952 MsG0280006325.01.T01:intron 15.0%
!! ATTTGATAAAAACTTACATA+TGG - Chr2:444122-444141 MsG0280006325.01.T01:intron 15.0%
!! TTAATATTTATGTATGAATC+AGG - Chr2:445127-445146 MsG0280006325.01.T01:intron 15.0%
!! TTTGATAAAAACTTACATAT+GGG - Chr2:444123-444142 MsG0280006325.01.T01:intron 15.0%
!!! ATCATTTGTATTTTTAACAT+TGG + Chr2:442424-442443 None:intergenic 15.0%
!!! ATTTATGTATATGTATTTTG+TGG - Chr2:443368-443387 MsG0280006325.01.T01:CDS 15.0%
!!! TCATTTGTATTTTTAACATT+GGG + Chr2:442423-442442 None:intergenic 15.0%
!!! TTTTAATCCAAAATTGAATT+AGG + Chr2:444004-444023 None:intergenic 15.0%
!! AACTATAAGGTTATCAAAAT+CGG + Chr2:443607-443626 None:intergenic 20.0%
!! AAGGTAATATATTAAGAACA+TGG + Chr2:444238-444257 None:intergenic 20.0%
!! AATAAAAAAGTTTAAGTGAG+GGG + Chr2:443840-443859 None:intergenic 20.0%
!! AATCTAGACAAAATACTTAA+AGG + Chr2:443265-443284 None:intergenic 20.0%
!! AATGTAGGAAAATCATAATA+AGG - Chr2:442342-442361 MsG0280006325.01.T01:CDS 20.0%
!! AGAAAGAAATATTTGATGTT+TGG + Chr2:444746-444765 None:intergenic 20.0%
!! AGATGATGCTATTAATAATA+TGG - Chr2:445545-445564 MsG0280006325.01.T01:intron 20.0%
!! ATGAAAAAATAAAAGGAGAT+AGG + Chr2:446004-446023 None:intergenic 20.0%
!! ATGTAGGAAAATCATAATAA+GGG - Chr2:442343-442362 MsG0280006325.01.T01:CDS 20.0%
!! CAATAAAAAAGTTTAAGTGA+GGG + Chr2:443841-443860 None:intergenic 20.0%
!! CTAGATTCAATTATTTCATT+TGG + Chr2:443882-443901 None:intergenic 20.0%
!! GTTAGGATTATATTCAAAAA+AGG - Chr2:444639-444658 MsG0280006325.01.T01:intron 20.0%
!! TACTATCAATATCAACAAAT+GGG + Chr2:443632-443651 None:intergenic 20.0%
!! TATAAATTAGATTCTCATGA+AGG - Chr2:444187-444206 MsG0280006325.01.T01:intron 20.0%
!! TCAATAAAAAAGTTTAAGTG+AGG + Chr2:443842-443861 None:intergenic 20.0%
!! TGTAATGAAATAAAAATCCA+TGG + Chr2:445471-445490 None:intergenic 20.0%
!! TTAAAATGACAATACAATAC+TGG - Chr2:444040-444059 MsG0280006325.01.T01:intron 20.0%
!! TTACTATCAATATCAACAAA+TGG + Chr2:443633-443652 None:intergenic 20.0%
!! TTCTTTAGTAGTCATAATAA+TGG + Chr2:443293-443312 None:intergenic 20.0%
!!! AAACAAAATAGTGATTTGTT+AGG + Chr2:445256-445275 None:intergenic 20.0%
!!! AACAAAATAGTGATTTGTTA+GGG + Chr2:445255-445274 None:intergenic 20.0%
!!! AAGACAAAGTATTAGAAATT+AGG - Chr2:442388-442407 MsG0280006325.01.T01:CDS 20.0%
!!! AATTGATAAATTTTAGATGC+AGG - Chr2:446065-446084 MsG0280006325.01.T01:intron 20.0%
!!! AGACAAAGTATTAGAAATTA+GGG - Chr2:442389-442408 MsG0280006325.01.T01:CDS 20.0%
!!! AGATTCTATTTTCTTATTTG+AGG - Chr2:444538-444557 MsG0280006325.01.T01:intron 20.0%
!!! AGTGAAAGAATGAAATTTTT+TGG + Chr2:443122-443141 None:intergenic 20.0%
!!! GATTCTATTTTCTTATTTGA+GGG - Chr2:444539-444558 MsG0280006325.01.T01:intron 20.0%
!!! TCAGAATTTTAAGAAATCAT+TGG + Chr2:444783-444802 None:intergenic 20.0%
!!! TGATTGTTTAGATTGATTTA+AGG + Chr2:443968-443987 None:intergenic 20.0%
!!! TTTTTCATTATATGTGGATA+GGG - Chr2:446016-446035 MsG0280006325.01.T01:intron 20.0%
!!! TTTTTTCATTATATGTGGAT+AGG - Chr2:446015-446034 MsG0280006325.01.T01:intron 20.0%
! AAACTTTCATGCAAAACTAT+TGG - Chr2:445042-445061 MsG0280006325.01.T01:intron 25.0%
! AAGAAATCAAAATGTGTATG+AGG - Chr2:446124-446143 MsG0280006325.01.T01:intron 25.0%
! AATAAAAGGAGATAGGTAAT+AGG + Chr2:445997-446016 None:intergenic 25.0%
! ACAAAGCTTAAGATTAACAA+GGG - Chr2:442738-442757 MsG0280006325.01.T01:intron 25.0%
! ACTAAAGAATATTTGCATCT+AGG - Chr2:443304-443323 MsG0280006325.01.T01:intron 25.0%
! ACTATAAGGTTATCAAAATC+GGG + Chr2:443606-443625 None:intergenic 25.0%
! AGAAAAGAAAATACCTATAG+AGG + Chr2:444567-444586 None:intergenic 25.0%
! AGAAAATCACCAAGAAAAAT+CGG + Chr2:445842-445861 None:intergenic 25.0%
! AGTGAAAATTGAAGAACAAT+TGG - Chr2:444612-444631 MsG0280006325.01.T01:intron 25.0%
! ATCAAATATTTCTTTCTCCT+TGG - Chr2:444749-444768 MsG0280006325.01.T01:intron 25.0%
! CTATGAGTTTCACAAAATTA+CGG - Chr2:445697-445716 MsG0280006325.01.T01:intron 25.0%
! GTCATTAAACATATAGTGAT+AGG - Chr2:445640-445659 MsG0280006325.01.T01:intron 25.0%
! TATATTACCTTGCTAGTATT+TGG - Chr2:444247-444266 MsG0280006325.01.T01:intron 25.0%
! TATTCATGCTATCAATACTT+GGG + Chr2:442809-442828 None:intergenic 25.0%
! TCGATGTTATATACAAGTAT+TGG + Chr2:444374-444393 None:intergenic 25.0%
! TTAACTAAAACTCTAACAGT+TGG - Chr2:445299-445318 MsG0280006325.01.T01:intron 25.0%
! TTTACAGCTATATTGTAATC+AGG - Chr2:444281-444300 MsG0280006325.01.T01:intron 25.0%
!! AATTTTATGTTTCTTCTAGC+TGG + Chr2:442631-442650 None:intergenic 25.0%
!! CTTTTGTGTATTTATAGAAC+CGG + Chr2:443098-443117 None:intergenic 25.0%
!! GAATTTTGTAGAATCGATAT+AGG + Chr2:443513-443532 None:intergenic 25.0%
!! TTTTGTGTATTTATAGAACC+GGG + Chr2:443097-443116 None:intergenic 25.0%
!!! CTTTTTTCATTCCATTCTAT+GGG - Chr2:442456-442475 MsG0280006325.01.T01:CDS 25.0%
!!! GTTTGTTCGTTTTTTGATAA+GGG - Chr2:443043-443062 MsG0280006325.01.T01:CDS 25.0%
!!! TCTTTTTTCATTCCATTCTA+TGG - Chr2:442455-442474 MsG0280006325.01.T01:CDS 25.0%
AAAATCGCAATCAAAATCGA+AGG + Chr2:443470-443489 None:intergenic 30.0%
AAAATTACAGAACCTTGTGA+TGG + Chr2:444944-444963 None:intergenic 30.0%
AAATTACAGAACCTTGTGAT+GGG + Chr2:444943-444962 None:intergenic 30.0%
ACAATGTGTTAGTCAATGTA+AGG + Chr2:442851-442870 None:intergenic 30.0%
AGTAGCTATTAGTATATCAC+AGG - Chr2:444322-444341 MsG0280006325.01.T01:intron 30.0%
ATACACAGCAAGACTTATTT+GGG - Chr2:444499-444518 MsG0280006325.01.T01:intron 30.0%
CAAGCATCTCATTTATACTT+TGG + Chr2:442586-442605 None:intergenic 30.0%
CAGGTCAAATTATTGAATGT+AGG - Chr2:442327-442346 MsG0280006325.01.T01:CDS 30.0%
CGGTTCTATAAATACACAAA+AGG - Chr2:443096-443115 MsG0280006325.01.T01:intron 30.0%
CTATTCATGCTATCAATACT+TGG + Chr2:442810-442829 None:intergenic 30.0%
CTATTTACCAAATACTAGCA+AGG + Chr2:444257-444276 None:intergenic 30.0%
GACAAAGCTTAAGATTAACA+AGG - Chr2:442737-442756 MsG0280006325.01.T01:intron 30.0%
GATTAAAGTACATGTCATTC+AGG - Chr2:442659-442678 MsG0280006325.01.T01:intron 30.0%
GATTATTATTGTGGAATGGT+TGG - Chr2:446146-446165 MsG0280006325.01.T01:intron 30.0%
GTAAGACTATGATCATGATA+AGG - Chr2:443649-443668 MsG0280006325.01.T01:CDS 30.0%
GTATATAACATCGAACTTTG+AGG - Chr2:444380-444399 MsG0280006325.01.T01:intron 30.0%
GTGTATGAGGATTATTATTG+TGG - Chr2:446137-446156 MsG0280006325.01.T01:intron 30.0%
TAAAATCGCAATCAAAATCG+AGG + Chr2:443471-443490 None:intergenic 30.0%
TCAAATTAAAACCACAGTCA+TGG + Chr2:444108-444127 None:intergenic 30.0%
TGAGGATTATTATTGTGGAA+TGG - Chr2:446142-446161 MsG0280006325.01.T01:intron 30.0%
! AAATCGAAGGATTTTACTCA+AGG + Chr2:443535-443554 None:intergenic 30.0%
! AATCATTGGTTGAAAATCCA+AGG + Chr2:444769-444788 None:intergenic 30.0%
! ATTTTGTCAAAGCTACACTT+CGG + Chr2:445754-445773 None:intergenic 30.0%
! TAAGCTTTGTCACTTATTTG+TGG + Chr2:442728-442747 None:intergenic 30.0%
! TATATCACAGGCACAAATTT+TGG - Chr2:444334-444353 MsG0280006325.01.T01:intron 30.0%
! TGAATCAGGTTTGAAATGAA+TGG - Chr2:445141-445160 MsG0280006325.01.T01:intron 30.0%
! TGATAGATTTTGCCTGTTTT+TGG + Chr2:442956-442975 None:intergenic 30.0%
!! CAATTTGAAAGTGCTTTCAT+CGG - Chr2:442539-442558 MsG0280006325.01.T01:intron 30.0%
!! GACTAGTCCTAATTCAATTT+TGG - Chr2:443994-444013 MsG0280006325.01.T01:intron 30.0%
!! GATAGATTTTGCCTGTTTTT+GGG + Chr2:442955-442974 None:intergenic 30.0%
!! GTGTAGCTTTGACAAAATTA+CGG - Chr2:445756-445775 MsG0280006325.01.T01:intron 30.0%
!! TTGTAGTTGGCTTGTATAAT+TGG + Chr2:445599-445618 None:intergenic 30.0%
!! TTTAATTTTCACCATGACTG+TGG - Chr2:444094-444113 MsG0280006325.01.T01:intron 30.0%
!!! AAATTTTGGAGTAACTGCAT+GGG - Chr2:444348-444367 MsG0280006325.01.T01:intron 30.0%
!!! AGGATTTGATGGATTTTGAA+GGG - Chr2:443021-443040 MsG0280006325.01.T01:CDS 30.0%
!!! GGTTTGTTCGTTTTTTGATA+AGG - Chr2:443042-443061 MsG0280006325.01.T01:CDS 30.0%
AAATTCATCTTCTGCTCTAG+AGG + Chr2:444703-444722 None:intergenic 35.0%
ACACTTCCTCAATAGTTACA+CGG - Chr2:443148-443167 MsG0280006325.01.T01:intron 35.0%
AGAGAATCATGATGTTGACA+TGG - Chr2:445906-445925 MsG0280006325.01.T01:intron 35.0%
ATCAAATCCTGCGATTTGAA+CGG + Chr2:443011-443030 None:intergenic 35.0%
ATGAATCGTATTCAATGTCG+AGG - Chr2:443680-443699 MsG0280006325.01.T01:CDS 35.0%
ATGCTTTCATGTTTCTTGCA+GGG - Chr2:444830-444849 MsG0280006325.01.T01:intron 35.0%
ATGTCAACATCATGATTCTC+TGG + Chr2:445907-445926 None:intergenic 35.0%
CAACAAATGGGTCAACTATA+AGG + Chr2:443620-443639 None:intergenic 35.0%
CACATTGTGATTCTACCTAA+CGG - Chr2:445782-445801 MsG0280006325.01.T01:intron 35.0%
CATACACAGCAAGACTTATT+TGG - Chr2:444498-444517 MsG0280006325.01.T01:intron 35.0%
CATCAAGTTCTTGGAGATAT+CGG - Chr2:444889-444908 MsG0280006325.01.T01:intron 35.0%
CTAAATGCCTGACAAAATGA+TGG + Chr2:443236-443255 None:intergenic 35.0%
CTCTTTAGGTATACTAGTCA+AGG + Chr2:446253-446272 None:intergenic 35.0%
CTTACATATGGGAATCATAC+TGG - Chr2:444134-444153 MsG0280006325.01.T01:intron 35.0%
GAAGAACAATTGGCTATGTT+AGG - Chr2:444622-444641 MsG0280006325.01.T01:intron 35.0%
GAATCAAGTTTCAGACTACA+TGG - Chr2:446092-446111 MsG0280006325.01.T01:intron 35.0%
TATGCTTTCATGTTTCTTGC+AGG - Chr2:444829-444848 MsG0280006325.01.T01:intron 35.0%
TCGATATAGGATAGCAAAGT+CGG + Chr2:443500-443519 None:intergenic 35.0%
TCTGCAATTCAAGACGATAA+TGG + Chr2:446179-446198 None:intergenic 35.0%
TGAGTTTCACAAAATTACGG+TGG - Chr2:445700-445719 MsG0280006325.01.T01:intron 35.0%
TTAAGTGAGGGCAATGTAAA+AGG - Chr2:442691-442710 MsG0280006325.01.T01:intron 35.0%
TTGCAAGCAACAAATAAGCT+TGG + Chr2:445022-445041 None:intergenic 35.0%
! AAAATCGGGACTTTTCGAAA+GGG + Chr2:443592-443611 None:intergenic 35.0%
! AAAGCACTTTCAAATTGGAG+GGG + Chr2:442536-442555 None:intergenic 35.0%
! ATAAGGGTCAATTTTTGACC+CGG - Chr2:443059-443078 MsG0280006325.01.T01:intron 35.0%
! CATCATTTTGTCAGGCATTT+AGG - Chr2:443234-443253 MsG0280006325.01.T01:intron 35.0%
! CTTGTAGTACTTTTCTTGCA+GGG - Chr2:444982-445001 MsG0280006325.01.T01:intron 35.0%
! TCTTGTAGTACTTTTCTTGC+AGG - Chr2:444981-445000 MsG0280006325.01.T01:intron 35.0%
! TGAAAGCATACACAGTAACA+TGG + Chr2:444819-444838 None:intergenic 35.0%
! TGAATCGAAAAAGAGAGTGT+AGG - Chr2:444463-444482 MsG0280006325.01.T01:intron 35.0%
! TGTAACTATTGAGGAAGTGT+GGG + Chr2:443148-443167 None:intergenic 35.0%
!! CGATGAAAGCACTTTCAAAT+TGG + Chr2:442541-442560 None:intergenic 35.0%
!! GAAAGCACTTTCAAATTGGA+GGG + Chr2:442537-442556 None:intergenic 35.0%
!! TGAAAGCACTTTCAAATTGG+AGG + Chr2:442538-442557 None:intergenic 35.0%
!!! AGGAGAAGTGTTTTAAGTGA+GGG - Chr2:442679-442698 MsG0280006325.01.T01:intron 35.0%
!!! CAAATTTTGGAGTAACTGCA+TGG - Chr2:444347-444366 MsG0280006325.01.T01:intron 35.0%
!!! CAGGATTTGATGGATTTTGA+AGG - Chr2:443020-443039 MsG0280006325.01.T01:CDS 35.0%
AACCAAGGTTAGAAGAACCA+TGG - Chr2:445451-445470 MsG0280006325.01.T01:intron 40.0%
AAGGATCAGACTGTTGACAT+GGG - Chr2:445519-445538 MsG0280006325.01.T01:intron 40.0%
ACAATCCCGTGTAACTATTG+AGG + Chr2:443157-443176 None:intergenic 40.0%
ATCACCAAGAAAAATCGGTC+TGG + Chr2:445837-445856 None:intergenic 40.0%
ATCATAGTTGAGCGTCAAAC+AGG - Chr2:442308-442327 MsG0280006325.01.T01:CDS 40.0%
ATCCATGGTTCTTCTAACCT+TGG + Chr2:445456-445475 None:intergenic 40.0%
ATGTCAACAGTCTGATCCTT+GGG + Chr2:445519-445538 None:intergenic 40.0%
CACTTCCTCAATAGTTACAC+GGG - Chr2:443149-443168 MsG0280006325.01.T01:intron 40.0%
CACTTCTAATTCTGGTACCA+GGG + Chr2:445184-445203 None:intergenic 40.0%
CATAGCAAAGTCCCAAAAAC+AGG - Chr2:442941-442960 MsG0280006325.01.T01:intron 40.0%
CGATATAGGATAGCAAAGTC+GGG + Chr2:443499-443518 None:intergenic 40.0%
CGATATCTCCAAGAACTTGA+TGG + Chr2:444891-444910 None:intergenic 40.0%
GAGATATCGGTAATCTTGAG+GGG - Chr2:444902-444921 MsG0280006325.01.T01:intron 40.0%
GATTCTTTAGTACAACGCCT+TGG + Chr2:445221-445240 None:intergenic 40.0%
GGAGATATCGGTAATCTTGA+GGG - Chr2:444901-444920 MsG0280006325.01.T01:intron 40.0%
GTAGGTTTAGACTAACCGTT+AGG + Chr2:445800-445819 None:intergenic 40.0%
GTGTAACTATTGAGGAAGTG+TGG + Chr2:443149-443168 None:intergenic 40.0%
GTTCAAATCGCAGGATTTGA+TGG - Chr2:443010-443029 MsG0280006325.01.T01:CDS 40.0%
GTTTGACGCTCAACTATGAT+TGG + Chr2:442308-442327 None:intergenic 40.0%
TAGGTATACTAGTCAAGGAG+AGG + Chr2:446248-446267 None:intergenic 40.0%
TATGATGCATGCCCATAGAA+TGG + Chr2:442470-442489 None:intergenic 40.0%
TATGATGCGTTTCTGTTAGC+CGG - Chr2:445866-445885 MsG0280006325.01.T01:intron 40.0%
TCACCAAGAAAAATCGGTCT+GGG + Chr2:445836-445855 None:intergenic 40.0%
TCGAAAGGGAGTAGCAAAAT+CGG + Chr2:443578-443597 None:intergenic 40.0%
TGGAGATATCGGTAATCTTG+AGG - Chr2:444900-444919 MsG0280006325.01.T01:intron 40.0%
TTAGCTGGCACTTCTAATTC+TGG + Chr2:445192-445211 None:intergenic 40.0%
TTATTTGAGGGCTCCTCTAT+AGG - Chr2:444551-444570 MsG0280006325.01.T01:intron 40.0%
TTTCTTGCAGGGAGAGATAA+GGG - Chr2:444841-444860 MsG0280006325.01.T01:intron 40.0%
! ACCACATTGCGTTTTGTAGT+TGG + Chr2:445612-445631 None:intergenic 40.0%
! AGTCGCAAAAACCAGGATTT+TGG + Chr2:442896-442915 None:intergenic 40.0%
! ATCGAAAAAGAGAGTGTAGG+AGG - Chr2:444466-444485 MsG0280006325.01.T01:intron 40.0%
! CAAAATCGGGACTTTTCGAA+AGG + Chr2:443593-443612 None:intergenic 40.0%
! GCTTGAAGATCTTTAAGAGC+TGG - Chr2:442601-442620 MsG0280006325.01.T01:CDS 40.0%
! GTAACTATTGAGGAAGTGTG+GGG + Chr2:443147-443166 None:intergenic 40.0%
! GTCGCAAAAACCAGGATTTT+GGG + Chr2:442895-442914 None:intergenic 40.0%
! TAACTATTGAGGAAGTGTGG+GGG + Chr2:443146-443165 None:intergenic 40.0%
! TTCCTGTCCATCATTTTGTC+AGG - Chr2:443226-443245 MsG0280006325.01.T01:intron 40.0%
!! TGACAAAATGATGGACAGGA+AGG + Chr2:443227-443246 None:intergenic 40.0%
!!! CAGGAGAAGTGTTTTAAGTG+AGG - Chr2:442678-442697 MsG0280006325.01.T01:intron 40.0%
!!! CTGTTTTTGGGACTTTGCTA+TGG + Chr2:442943-442962 None:intergenic 40.0%
ACCAAGAAAAATCGGTCTGG+GGG + Chr2:445834-445853 None:intergenic 45.0%
ACGCCTTGGTCATAATTAGC+TGG + Chr2:445207-445226 None:intergenic 45.0%
AGATTTCACGACCCATCACA+AGG - Chr2:444929-444948 MsG0280006325.01.T01:intron 45.0%
AGGAAGGAGGCAATCTAGTT+AGG + Chr2:443211-443230 None:intergenic 45.0%
ATCGTCTCAACTCTCAACCA+AGG - Chr2:445436-445455 MsG0280006325.01.T01:intron 45.0%
CAAGGATCAGACTGTTGACA+TGG - Chr2:445518-445537 MsG0280006325.01.T01:intron 45.0%
CACCAAGAAAAATCGGTCTG+GGG + Chr2:445835-445854 None:intergenic 45.0%
CATGTCAACAGTCTGATCCT+TGG + Chr2:445520-445539 None:intergenic 45.0%
CGAAAGGGAGTAGCAAAATC+GGG + Chr2:443577-443596 None:intergenic 45.0%
CGACTTAAGTCCCAAAATCC+TGG - Chr2:442882-442901 MsG0280006325.01.T01:intron 45.0%
CGAGAAACATGGAGGAAACA+AGG - Chr2:443743-443762 MsG0280006325.01.T01:intron 45.0%
CTGGCTCAAATGTCAAGATC+CGG + Chr2:445888-445907 None:intergenic 45.0%
GAGAGATAAGGGAAAGCAGA+AGG - Chr2:444852-444871 MsG0280006325.01.T01:intron 45.0%
GATGCGCATACAACTATGGA+AGG + Chr2:442514-442533 None:intergenic 45.0%
GCACTTCTAATTCTGGTACC+AGG + Chr2:445185-445204 None:intergenic 45.0%
GCCAACTACAAAACGCAATG+TGG - Chr2:445608-445627 MsG0280006325.01.T01:intron 45.0%
GGTTGTACAACGCAGAATGT+TGG - Chr2:442759-442778 MsG0280006325.01.T01:intron 45.0%
GTACAACGCAGAATGTTGGT+AGG - Chr2:442763-442782 MsG0280006325.01.T01:intron 45.0%
GTCGAGGAAGAAACTGTTGA+TGG - Chr2:443696-443715 MsG0280006325.01.T01:intron 45.0%
GTGAAATCCGTTCAAATCGC+AGG - Chr2:443001-443020 MsG0280006325.01.T01:CDS 45.0%
GTGCCAGCTAATTATGACCA+AGG - Chr2:445201-445220 MsG0280006325.01.T01:intron 45.0%
GTTTCTTGCAGGGAGAGATA+AGG - Chr2:444840-444859 MsG0280006325.01.T01:intron 45.0%
TACGCAAAGTCGCAAAAACC+AGG + Chr2:442903-442922 None:intergenic 45.0%
TAGTTCTCGCTCGAGAAACA+TGG - Chr2:443732-443751 MsG0280006325.01.T01:intron 45.0%
TCGTCTTGAATTGCAGACAG+AGG - Chr2:446182-446201 MsG0280006325.01.T01:intron 45.0%
TTGTCAAAGCTACACTTCGG+AGG + Chr2:445751-445770 None:intergenic 45.0%
TTTCTCGAGCGAGAACTAGT+TGG + Chr2:443730-443749 None:intergenic 45.0%
! AACCGGGTCAATTTTCGAAC+CGG + Chr2:443081-443100 None:intergenic 45.0%
! AAGAGCAAGCACTGCTATTC+TGG + Chr2:444425-444444 None:intergenic 45.0%
!! CAAAATGATGGACAGGAAGG+AGG + Chr2:443224-443243 None:intergenic 45.0%
!! TGCCTGACAAAATGATGGAC+AGG + Chr2:443231-443250 None:intergenic 45.0%
!!! TTAACATTATTTTTTTTTTT+TGG - Chr2:443439-443458 MsG0280006325.01.T01:intron 5.0%
!!! TTTTATTCAAATTTAAAATA+AGG + Chr2:443906-443925 None:intergenic 5.0%
AAAATCGGTCTGGGGGATAG+AGG + Chr2:445827-445846 None:intergenic 50.0%
AAGCAGAAGGCAGAAAGAGG+TGG - Chr2:444865-444884 MsG0280006325.01.T01:intron 50.0%
AGAGGTGGCCATCAAGTTCT+TGG - Chr2:444880-444899 MsG0280006325.01.T01:intron 50.0%
AGGGGATGCGCATACAACTA+TGG + Chr2:442518-442537 None:intergenic 50.0%
GGAAAGCAGAAGGCAGAAAG+AGG - Chr2:444862-444881 MsG0280006325.01.T01:intron 50.0%
TTCTCGCTCGAGAAACATGG+AGG - Chr2:443735-443754 MsG0280006325.01.T01:intron 50.0%
! ACCCGGTTCGAAAATTGACC+CGG - Chr2:443076-443095 MsG0280006325.01.T01:intron 50.0%
! ACCGGGTCAATTTTCGAACC+GGG + Chr2:443080-443099 None:intergenic 50.0%
!! TCCCCCAGACCGATTTTTCT+TGG - Chr2:445830-445849 MsG0280006325.01.T01:intron 50.0%
ACCAGGGTCTGCAAACGAAG+AGG + Chr2:445168-445187 None:intergenic 55.0%
AGAACACTCACTGCTGCAGC+TGG + Chr2:445076-445095 None:intergenic 55.0%
CCAACTCTTGTTCGAGCCCA+AGG - Chr2:445500-445519 MsG0280006325.01.T01:intron 55.0%
CCTTGGGCTCGAACAAGAGT+TGG + Chr2:445503-445522 None:intergenic 55.0%
GTAGGAAAGTGAGCGCGTCT+AGG - Chr2:442781-442800 MsG0280006325.01.T01:intron 55.0%
TCCTCTTCGTTTGCAGACCC+TGG - Chr2:445164-445183 MsG0280006325.01.T01:intron 55.0%
! CTGGGGGATAGAGGAAGTGT+AGG + Chr2:445818-445837 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr2 gene 442278 446278 442278 ID=MsG0280006325.01;Name=MsG0280006325.01
Chr2 mRNA 442278 446278 442278 ID=MsG0280006325.01.T01;Parent=MsG0280006325.01;Name=MsG0280006325.01.T01;_AED=0.50;_eAED=0.56;_QI=0|0|0|1|1|1|6|0|220
Chr2 exon 446212 446278 446212 ID=MsG0280006325.01.T01:exon:718;Parent=MsG0280006325.01.T01
Chr2 exon 443606 443705 443606 ID=MsG0280006325.01.T01:exon:717;Parent=MsG0280006325.01.T01
Chr2 exon 443314 443407 443314 ID=MsG0280006325.01.T01:exon:716;Parent=MsG0280006325.01.T01
Chr2 exon 442967 443064 442967 ID=MsG0280006325.01.T01:exon:715;Parent=MsG0280006325.01.T01
Chr2 exon 442566 442671 442566 ID=MsG0280006325.01.T01:exon:714;Parent=MsG0280006325.01.T01
Chr2 exon 442278 442475 442278 ID=MsG0280006325.01.T01:exon:713;Parent=MsG0280006325.01.T01
Chr2 CDS 446212 446278 446212 ID=MsG0280006325.01.T01:cds;Parent=MsG0280006325.01.T01
Chr2 CDS 443606 443705 443606 ID=MsG0280006325.01.T01:cds;Parent=MsG0280006325.01.T01
Chr2 CDS 443314 443407 443314 ID=MsG0280006325.01.T01:cds;Parent=MsG0280006325.01.T01
Chr2 CDS 442967 443064 442967 ID=MsG0280006325.01.T01:cds;Parent=MsG0280006325.01.T01
Chr2 CDS 442566 442671 442566 ID=MsG0280006325.01.T01:cds;Parent=MsG0280006325.01.T01
Chr2 CDS 442278 442475 442278 ID=MsG0280006325.01.T01:cds;Parent=MsG0280006325.01.T01
Gene Sequence

>MsG0280006325.01.T01

ATGGTGGAGCACTTGTACAACTATATTCCAATCATAGTTGAGCGTCAAACAGGTCAAATTATTGAATGGAGAGATAAGGGAAAGCAGAAGGCAGAAAGAGGTGGCCATCAAGTTCTTGGAGATATCGGTAATCTTGAGGGGAATCAGATTTCACGACCCATCACAAGGTTTGAAATGAATGGTCCTCTTCGTTTGCAGACCCTGGTACCAGAATTAGAAGTGCCAGCTAATTATGACCAAGGCGTTGTACTAAAGAATCGTACTGCTCTCCAACTCTTGTTCGAGCCCAAGGATCAGACTGTTGACATGGGTGCAGATGATGCTATTAATAATATGGAAGAAGCTGAATATCTTGACAACCGGATCTTGACATTTGAGCCAGAGAATCATGATGTTGACATGGAAACAAAAGATGCTATTAATAATTTGGAAGCAGTTCAATATCTTGATATCAAGCTAACAGAAATGCAGGAAGAGAATCAAGTTTCAGACTACATGGAATCACAGAAAGAAATCAAAATGTGTATGAGGATTATTATTGTGGAATGGTTGGTTAAAGTCCATTATCGTCTTGAATTGCAGACAGAGGCACTCTTTCTTACTATTAACATAATTGAAATTGATAGATACCTCTCCTTGACTAGTATACCTAAAGAGATCTGA

Protein sequence

>MsG0280006325.01.T01

MVEHLYNYIPIIVERQTGQIIEWRDKGKQKAERGGHQVLGDIGNLEGNQISRPITRFEMNGPLRLQTLVPELEVPANYDQGVVLKNRTALQLLFEPKDQTVDMGADDAINNMEEAEYLDNRILTFEPENHDVDMETKDAINNLEAVQYLDIKLTEMQEENQVSDYMESQKEIKMCMRIIIVEWLVKVHYRLELQTEALFLTINIIEIDRYLSLTSIPKEI*