AlfalfaGEDB | MsG0480018538.01

M. sativa cultivar ZhongmuNo.1 / MsG0480018538.01

KEGG: -
GO: GO:0004672 GO:0005515 GO:0005524 GO:0006468 GO:0007165 GO:0043531
PFAM: PF00069 PF00931 PF01582

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018538.01.T01	KEH28833.1	66.797	1024	210	15	74	1022	1	969	0	1232

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018538.01.T01	O82500	34.088	927	509	21	74	911	1	914	9.92E-137	447

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018538.01.T01	A0A072UIB7	66.797	1024	210	15	74	1022	1	969	0.0	1232

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000983.01	MsG0480018538.01	0.833903	4.082469e-56	4.767869e-53
MsG0180004099.01	MsG0480018538.01	0.813286	2.763561e-51	1.797247e-48
MsG0380015805.01	MsG0480018538.01	0.808066	3.717807e-50	2.104995e-47
MsG0480018346.01	MsG0480018538.01	0.818468	1.929502e-52	1.445612e-49
MsG0480018527.01	MsG0480018538.01	0.863491	2.396775e-64	7.278627e-61
MsG0480018529.01	MsG0480018538.01	0.891010	5.864241e-74	5.052176e-70
MsG0480018538.01	MsG0880041896.01	0.833456	5.277923e-56	6.081518e-53
MsG0480018538.01	MsG0880044041.01	0.821291	4.364596e-53	3.536327e-50

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0480018538.01.T01	MTR_4g013370	66.797	1024	210	15	74	1022	1	969	1232
MsG0480018538.01.T01	MTR_4g014340	63.974	1077	264	19	41	1012	36	1093	1202
MsG0480018538.01.T01	MTR_4g014280	57.482	1096	283	17	41	1013	22	1057	1098
MsG0480018538.01.T01	MTR_4g014300	56.204	1096	324	20	41	1009	22	1088	1050
MsG0480018538.01.T01	MTR_5g031270	69.259	823	202	10	68	860	158	959	1039
MsG0480018538.01.T01	MTR_4g014310	55.018	1096	311	20	41	1013	9	1045	1009
MsG0480018538.01.T01	MTR_4g014310	56.172	1045	303	19	65	1013	36	1021	999
MsG0480018538.01.T01	MTR_4g014220	56.792	1060	315	21	41	1013	22	1025	988
MsG0480018538.01.T01	MTR_4g014120	66.989	827	221	11	74	860	1	815	962
MsG0480018538.01.T01	MTR_4g014240	52.924	1026	377	18	82	1012	70	1084	952

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018538.01.T01	AT5G41750	36.180	890	474	25	83	894	12	885	1.19e-139	452
MsG0480018538.01.T01	AT5G41750	36.180	890	474	25	83	894	12	885	1.19e-139	452
MsG0480018538.01.T01	AT5G41540	35.150	899	484	23	74	890	1	882	1.53e-138	448
MsG0480018538.01.T01	AT5G22690	36.045	885	454	25	84	905	10	845	5.65e-138	442
MsG0480018538.01.T01	AT4G11170	34.088	927	509	21	74	911	1	914	1.01e-137	447
MsG0480018538.01.T01	AT5G22690	36.045	885	454	25	84	905	10	845	1.21e-137	442
MsG0480018538.01.T01	AT5G22690	36.036	888	450	25	84	905	10	845	1.91e-136	442
MsG0480018538.01.T01	AT5G22690	36.036	888	450	25	84	905	10	845	4.12e-136	441
MsG0480018538.01.T01	AT5G49140	36.342	831	443	20	83	845	14	826	1.92e-131	427
MsG0480018538.01.T01	AT5G17680	36.136	797	449	18	83	837	17	795	2.37e-131	435

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Find 226 sgRNAs with CRISPR-Local

Find 466 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATCATACTTTGAATG+AGG	0.568272	4:-6315892	None:intergenic
AAAACTATGCTTCTTCACGT+TGG	0.652736	4:+6316091	MsG0480018538.01.T01:CDS
AAAAGTCTGGTAACTCCTTC+AGG	0.382664	4:-6318617	None:intergenic
AAAATCCAAGGTTGAGATAA+AGG	0.347352	4:-6318797	None:intergenic
AAACATATACCTGCTGCTCG+AGG	0.597492	4:+6321509	MsG0480018538.01.T01:CDS
AAAGATGATCTGTTTGAGGT+TGG	0.508125	4:+6317510	MsG0480018538.01.T01:CDS
AAAGCTTTGGTGTGGAGTGC+AGG	0.532118	4:+6318448	MsG0480018538.01.T01:CDS
AACAGTTGCTGAACAATTCA+AGG	0.377803	4:+6319112	MsG0480018538.01.T01:CDS
AACATATACCTGCTGCTCGA+GGG	0.582736	4:+6321510	MsG0480018538.01.T01:CDS
AACCAAGAGAATATAGTACA+TGG	0.582559	4:+6321608	MsG0480018538.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCCAAGGTTGAGATAA+AGG	-	Chr4:6318800-6318819	None:intergenic	30.0%
AAAGCTATACGAGAAACTAT+TGG	-	Chr4:6315504-6315523	None:intergenic	30.0%
AAAGGACAAAATGAGAATCA+AGG	+	Chr4:6321134-6321153	MsG0480018538.01.T01:intron	30.0%
AACCAAGAGAATATAGTACA+TGG	+	Chr4:6321608-6321627	MsG0480018538.01.T01:CDS	30.0%
AAGAACTAATGGAATTCCTT+TGG	-	Chr4:6317646-6317665	None:intergenic	30.0%
AAGCTATACGAGAAACTATT+GGG	-	Chr4:6315503-6315522	None:intergenic	30.0%
AAGGACAAAATGAGAATCAA+GGG	+	Chr4:6321135-6321154	MsG0480018538.01.T01:intron	30.0%
AATAAGTACTTGCTTATCTC+TGG	-	Chr4:6317475-6317494	None:intergenic	30.0%
AATCAGTTGCATATACAAAG+AGG	-	Chr4:6320589-6320608	None:intergenic	30.0%
AATTGCTGGTAAATGTTGTA+AGG	-	Chr4:6318761-6318780	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	6314629	6322141	6314629	ID=MsG0480018538.01;Name=MsG0480018538.01
Chr4	mRNA	6314629	6322141	6314629	ID=MsG0480018538.01.T01;Parent=MsG0480018538.01;Name=MsG0480018538.01.T01;_AED=0.56;_eAED=0.56;_QI=0\|0.5\|0.22\|0.88\|1\|1\|9\|0\|1237
Chr4	exon	6314629	6314745	6314629	ID=MsG0480018538.01.T01:exon:2188;Parent=MsG0480018538.01.T01
Chr4	exon	6314825	6314908	6314825	ID=MsG0480018538.01.T01:exon:2189;Parent=MsG0480018538.01.T01
Chr4	exon	6315856	6316334	6315856	ID=MsG0480018538.01.T01:exon:2190;Parent=MsG0480018538.01.T01
Chr4	exon	6316973	6317400	6316973	ID=MsG0480018538.01.T01:exon:2191;Parent=MsG0480018538.01.T01
Chr4	exon	6317472	6318091	6317472	ID=MsG0480018538.01.T01:exon:2192;Parent=MsG0480018538.01.T01
Chr4	exon	6318188	6318469	6318188	ID=MsG0480018538.01.T01:exon:2193;Parent=MsG0480018538.01.T01
Chr4	exon	6318576	6319147	6318576	ID=MsG0480018538.01.T01:exon:2194;Parent=MsG0480018538.01.T01
Chr4	exon	6319254	6319726	6319254	ID=MsG0480018538.01.T01:exon:2195;Parent=MsG0480018538.01.T01
Chr4	exon	6321483	6322141	6321483	ID=MsG0480018538.01.T01:exon:2196;Parent=MsG0480018538.01.T01
Chr4	CDS	6314629	6314745	6314629	ID=MsG0480018538.01.T01:cds;Parent=MsG0480018538.01.T01
Chr4	CDS	6314825	6314908	6314825	ID=MsG0480018538.01.T01:cds;Parent=MsG0480018538.01.T01
Chr4	CDS	6315856	6316334	6315856	ID=MsG0480018538.01.T01:cds;Parent=MsG0480018538.01.T01
Chr4	CDS	6316973	6317400	6316973	ID=MsG0480018538.01.T01:cds;Parent=MsG0480018538.01.T01
Chr4	CDS	6317472	6318091	6317472	ID=MsG0480018538.01.T01:cds;Parent=MsG0480018538.01.T01
Chr4	CDS	6318188	6318469	6318188	ID=MsG0480018538.01.T01:cds;Parent=MsG0480018538.01.T01
Chr4	CDS	6318576	6319147	6318576	ID=MsG0480018538.01.T01:cds;Parent=MsG0480018538.01.T01
Chr4	CDS	6319254	6319726	6319254	ID=MsG0480018538.01.T01:cds;Parent=MsG0480018538.01.T01
Chr4	CDS	6321483	6322141	6321483	ID=MsG0480018538.01.T01:cds;Parent=MsG0480018538.01.T01

Gene Sequence

>MsG0480018538.01.T01

ATGATTATCCTTTTGGGCTGGATCATTGCTCTCTTGAGCTTCCTCAAATTTGTTGTGTTGTTATTGCGCCATGGTCAAGGAACACGTGATGGGGCGGGTCTTATTCCTGAGGTTGAGAGAAGTAAGGCATCGCCAGATGGAATTGTTGCTGGAACCTCTAACTTGGAAATGCAGCCATTAGGGGTCTCTGATATAAAACATGGTGCAGCAGAAAAGGCAATGCCAAACAACAATACTCCTCATTCAAAGTATGATGTTTTTGTAAGCTTTAGGGGTGAGGATATCCGCCACGACTTTCTAAGCCATTTGGTTAAGGCTTTTCCTCAAAAGCAAATAAATGCTTTTGTCGATGACAAACTTAAGAGGGGAGATGACATATCGGATTCACTTGTTGAAGCAATTGAAGGATCATCCATTTTATTGGTCATATTCTCAGAAAACTATGCTTCTTCACGTTGGTGTTTAGAAGAACTTGTGAAAATAATTGATTGCAAAGAGAAATATGGACAGATTGTAATACCTATTTTCTATGGGGTAGATCCTACAGAAGTACGACATCAAAAGAAGTGTTATGAATTTGCTCAACTTGTAAAAAAGTATGAATTGTCCGAGGTTCAAATGTGGAGAGACGCTTTGAAAAAATCAGCTAATTTGTCGGGAATCAAGTCATTAGATTTTAAGAATGATGCCGTGCTGGTGGAAGAAATCACCAAGGTTGTGTTGATGAGGTTGAGTAAGCTCAAGAATTCACCAGTTAACTCAAAAAAACTTGTTGGAATTGACAAATCTATTTCACATTTGAAATCATTGTTAAAGAAAGAGTCACACAAGGCCCCTGTTATTGGAATTTGGGGTATGGGCGGTATTGGCAAGACAACTATTGCAAAAGAATTATTTGACCAAATTTGTTCTGAATATGATGGTTGTTGTTTCTTGGAAAAGGCAAGTGAAGAGTTAACAAGACATGGAATGGAATCTTTAAAAAATAAACTTTTTTCTGAACTATTGGCAGAAGATGTGAAAATTGATACACCAAATTGGTTGCCTAGTGATATTGAGAGGCGGATTGGCCGCATGAAGGTTCTTATCGTTCTTGATGACGTCAAGGCCAGAGATAAGCAAGTACTTATTGCTAATGAAGTTGATAAAGATGATCTGTTTGAGGTTGGGGTATTGGGTCCTACTGAAAAACTTGCGCTTTTCAATTTGAATGCCTTTAAACAAAGTGATCTTGAAGTTGATCAGTTTTGTGATGTATCAAAGAGGGTGATCAATTATGCCAAAGGAATTCCATTAGTTCTTAAAGTTTTGGCTAATATGCTTCGTGGAAAAAGTAAAGAAGTATGGGAAAGTCAACTAGACAAACTTAGAAAACTGCAAGATAAAGAAGTTCATGATGTAATGATACAAAGTTACAATGATCTTGATTGTTTGGAGAAAAAATATTTTTTAGATATTGCTTGTTTCTTCAATGGGTTGAATTTGAAAGTGGATTACATGAAACTTTTATTGAGAGATTCTAACAGTGATAAGTCAGTGGCTTTTGTGTTAGAAAGGTTGGAAGACAAAGCTCTTATAACTATTTCTGAAGATAATGTTATATCTATGCATGACATTCTACAAGAAATGGGTCGGGAGGTTGTTCGCCGAGAATCTAGTAAAGACCCTGAAAAACGCAGTCACTTATGGGACCCTGATGAAATTTATGATGTATTGAAAAATGACATGGGTACCAATGTTATTAGAAGCATAAGTCTGTCAACAATATGGAAGCTCAAGTTAAGCCCTCATGTATTTGATAAGATGACCGATCTTCAATTTTTGAATTTTCGTGATATAGAGGGGTTTGATTGTTTTCCTCAAGGGCTTCAATCTTTTCCACGTGGTATAAAATATCTTCATTGGACATACTGCCCTCTAAAATCATTGCCAGAGAAGTTTTCTGCAGAGAATCTTGTTATATTGGACTTGTCATATAGCCTACTGGAAAAGCTTTGGTGTGGAGTGCAGAATCTAGTTAATTTAAAAGAAGTTAAACTCAGTTGGTCAAGCCTGAAGGAGTTACCAGACTTTTCAGAAGCCCTAAAACTTAAGGTATTGAATATGAGATATTGTCGTCAGTTAGAAAGCATCCATCCATCTATTTTCTCTCTTGACAAGCTTGTGCATTTGGACCTAAATAATTGTGATTCCCTTACAACATTTACCAGCAATTCCAATTTAAGCTCCCTCCTTTATCTCAACCTTGGATTTTGCAAAAAACTTAGTGAATTCTCAGTGACTTCAGAGAATATAGTAGAACTATATCTATCCAGATGTCCCATCAATGCACTGCCATCATCTTTTGGATGTCAAAGCAATCTAGAAATCCTGGTTTTAAATGATACTGAAATTGAGATCATACCTTCAAGCATCAAGAATCTTACAAGACTAAGGAAACTAGACATACGACGTTGCTCAAAGCTTCTGGCTCTACCTGAGCTTCCTTCATCAGTTGAAACTCTACTTGTTGACTGTGAGTCACTGAAGACTGTATTGTTCCCTTCAACAGTTGCTGAACAATTCAAGGAAAACAAGAAAGGAGCAGTGTATGCTTATCCTGGAAGTAGTGTTCCAGATTGGTTTGAGTACAAGACAACAAATGATGACATGATTGTTGATCTCTCTCCACATCATCTCTCCCCTTTGCTGGGCTTTGTTTTTTGCTTTGTTATTGCTTGGGGGACCGGATTTTTTAGCAAAATTAAATTGAAAATTACTATAATTGAGGGTGACGATGAAAAGGATGGCGTCCATATCGACTGGCATATGCCATCGGGTTCTCAGTTCTCAGTGTTTAATTATTCAGAGCATGTGTGCATGATATACGACCAACGATGTTCTTCTCAGTACCTAACTAGAATAGCAAAAAATCAGACAAGCTTTAAAATCAAGGTTTCAGCATGGACAGAATTCCTTTCCATCAAGGAGAAGTTAAAAGCGTTTGGCATGAGCCCCATAAACCAGTCAACATATCAAAATCTCATTCAACAAATGGAATACGAATGTGCTGAAGTCAAAAGATCTGATATTGATATTTCTAAACATATACCTGCTGCTCGAGGGCCTGAAATTGTCGTTGAATGGCCAACAAGGATGAAAATAGCAATTGGAATCGTCAATGGTCTCTCTTGCCTCCATAACCAAGAGAATATAGTACATGGAAATCTCACCTCAAGTAACATACTATTGGATGAGCAAACAAACCCTCACATCACAGATTTTGGTCTTTCAAGACTAATGACAACTTCAGCCAACACCAACATCATTGCTACAGCAGGAAGTCTCGGATACAATGCACCGGAGCTTTCAAAGACAAAGAAACCTACCACAAAGACCGACGTTTACAGCCTCAGCGTTATTCTTTTGGAGCTTTTAATAACTGGTAAACCACCAGGAGAACCAACAAATGGCATAGACTTGCCTCAATATGTTGCATCCATTGTTAAAGAAGAATGGACAAATGAAGTGTTTGATTTGGAACTCATGAGGGATGGACCAACGATAGGAGATGAACTTCTTAATACATTGAAATTAGCTTTGCATTGTGTTGATCCATCACCTTTTGCTAGGCCTGAAGTTAAACAAGTTTTGCAACAGTTAGAGGAGATTAAGCCAGTATTGGTCGAAGTTCAAGTTGATGATGATGGAGCAAAGGTTCAAACAGATGAATAA

Protein sequence

>MsG0480018538.01.T01

MIILLGWIIALLSFLKFVVLLLRHGQGTRDGAGLIPEVERSKASPDGIVAGTSNLEMQPLGVSDIKHGAAEKAMPNNNTPHSKYDVFVSFRGEDIRHDFLSHLVKAFPQKQINAFVDDKLKRGDDISDSLVEAIEGSSILLVIFSENYASSRWCLEELVKIIDCKEKYGQIVIPIFYGVDPTEVRHQKKCYEFAQLVKKYELSEVQMWRDALKKSANLSGIKSLDFKNDAVLVEEITKVVLMRLSKLKNSPVNSKKLVGIDKSISHLKSLLKKESHKAPVIGIWGMGGIGKTTIAKELFDQICSEYDGCCFLEKASEELTRHGMESLKNKLFSELLAEDVKIDTPNWLPSDIERRIGRMKVLIVLDDVKARDKQVLIANEVDKDDLFEVGVLGPTEKLALFNLNAFKQSDLEVDQFCDVSKRVINYAKGIPLVLKVLANMLRGKSKEVWESQLDKLRKLQDKEVHDVMIQSYNDLDCLEKKYFLDIACFFNGLNLKVDYMKLLLRDSNSDKSVAFVLERLEDKALITISEDNVISMHDILQEMGREVVRRESSKDPEKRSHLWDPDEIYDVLKNDMGTNVIRSISLSTIWKLKLSPHVFDKMTDLQFLNFRDIEGFDCFPQGLQSFPRGIKYLHWTYCPLKSLPEKFSAENLVILDLSYSLLEKLWCGVQNLVNLKEVKLSWSSLKELPDFSEALKLKVLNMRYCRQLESIHPSIFSLDKLVHLDLNNCDSLTTFTSNSNLSSLLYLNLGFCKKLSEFSVTSENIVELYLSRCPINALPSSFGCQSNLEILVLNDTEIEIIPSSIKNLTRLRKLDIRRCSKLLALPELPSSVETLLVDCESLKTVLFPSTVAEQFKENKKGAVYAYPGSSVPDWFEYKTTNDDMIVDLSPHHLSPLLGFVFCFVIAWGTGFFSKIKLKITIIEGDDEKDGVHIDWHMPSGSQFSVFNYSEHVCMIYDQRCSSQYLTRIAKNQTSFKIKVSAWTEFLSIKEKLKAFGMSPINQSTYQNLIQQMEYECAEVKRSDIDISKHIPAARGPEIVVEWPTRMKIAIGIVNGLSCLHNQENIVHGNLTSSNILLDEQTNPHITDFGLSRLMTTSANTNIIATAGSLGYNAPELSKTKKPTTKTDVYSLSVILLELLITGKPPGEPTNGIDLPQYVASIVKEEWTNEVFDLELMRDGPTIGDELLNTLKLALHCVDPSPFARPEVKQVLQQLEEIKPVLVEVQVDDDGAKVQTDE*