AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018607.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018607.01.T01 MTR_4g415290 98.990 495 5 0 1 495 1 495 0.0 998
MsG0480018607.01.T01 MTR_7g067380 84.040 495 77 2 1 494 3 496 0.0 853
MsG0480018607.01.T01 MTR_8g030620 62.118 491 179 5 7 491 10 499 0.0 634
MsG0480018607.01.T01 MTR_1g040500 57.895 494 200 5 7 494 6 497 0.0 589
MsG0480018607.01.T01 MTR_5g080360 51.255 478 223 4 21 492 2 475 3.32e-164 474
MsG0480018607.01.T01 MTR_5g091660 50.509 491 227 7 7 491 51 531 1.20e-162 471
MsG0480018607.01.T01 MTR_3g448430 46.626 489 242 8 8 489 35 511 6.95e-150 438
MsG0480018607.01.T01 MTR_1g086650 43.542 480 254 8 17 489 60 529 3.42e-127 381
MsG0480018607.01.T01 MTR_5g061520 41.975 486 267 8 15 494 10 486 7.89e-121 363
MsG0480018607.01.T01 MTR_3g048330 52.837 282 120 3 220 493 1 277 1.18e-99 301
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018607.01.T01 AT2G38110 80.000 485 95 1 7 489 10 494 0.0 791
MsG0480018607.01.T01 AT4G00400 61.680 488 181 5 7 491 10 494 0.0 606
MsG0480018607.01.T01 AT1G01610 60.976 492 185 6 7 494 10 498 0.0 596
MsG0480018607.01.T01 AT3G11430 51.553 483 212 5 19 489 9 481 7.59e-166 478
MsG0480018607.01.T01 AT5G06090 48.765 486 221 6 19 489 7 479 7.07e-153 445
MsG0480018607.01.T01 AT1G06520 44.767 516 249 11 5 490 76 585 1.34e-146 432
MsG0480018607.01.T01 AT1G02390 39.468 489 276 9 16 490 46 528 1.51e-110 338
MsG0480018607.01.T01 AT4G01950 39.351 493 269 11 17 492 41 520 5.39e-108 331
MsG0480018607.01.T01 AT4G01950 39.351 493 269 11 17 492 69 548 1.56e-107 331
MsG0480018607.01.T01 AT3G11325 49.237 262 100 1 228 489 144 372 1.12e-83 264
MsG0480018607.01.T01 AT3G11325 37.143 105 66 0 31 135 9 113 3.98e-16 80.5
MsG0480018607.01.T01 AT3G11325 49.237 262 100 1 228 489 141 369 1.43e-83 264
MsG0480018607.01.T01 AT3G11325 37.143 105 66 0 31 135 6 110 4.08e-16 80.5

Find 127 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTATCCTTCCTTGTTAAAT+TGG 0.158055 4:+7302038 None:intergenic
GAGGCAGTTATGAAAGAATT+TGG 0.160182 4:-7306165 MsG0480018607.01.T01:CDS
GTACATAATATGTTATATTT+AGG 0.232961 4:+7301685 None:intergenic
TTGCACTCTTAACCTTCTTA+TGG 0.235930 4:-7302719 MsG0480018607.01.T01:CDS
GTGCATCTTTGTGATGTAAA+AGG 0.268997 4:-7301602 MsG0480018607.01.T01:three_prime_UTR
TTTGTGCTACATTTAGAAAT+TGG 0.290743 4:+7306669 None:intergenic
GAATCATACTTTCAATCTTA+AGG 0.293063 4:-7302686 MsG0480018607.01.T01:CDS
GAGTAACAATTTGCCTGATT+TGG 0.303564 4:-7306142 MsG0480018607.01.T01:CDS
AATTATATTCAAAGGGTTCT+TGG 0.305203 4:-7302084 MsG0480018607.01.T01:CDS
AGAAGCTTGTTTCTTGGTAA+TGG 0.311340 4:+7302795 None:intergenic
GATAAGTATGCTATTCTTGC+AGG 0.334585 4:-7302021 MsG0480018607.01.T01:CDS
GGGCTTAGAAGCTTGTTTCT+TGG 0.336364 4:+7302789 None:intergenic
AGTAACAATTTGCCTGATTT+GGG 0.342680 4:-7306141 MsG0480018607.01.T01:CDS
AATCATACTTTCAATCTTAA+GGG 0.343266 4:-7302685 MsG0480018607.01.T01:CDS
TTTCTTGAATCAGTTACCTT+TGG 0.350040 4:-7302148 MsG0480018607.01.T01:CDS
AGGGTTCTTGGAGGGACTCT+TGG 0.352717 4:-7302072 MsG0480018607.01.T01:CDS
AATGAATTGTATTACAGTTA+TGG 0.352845 4:-7301552 MsG0480018607.01.T01:three_prime_UTR
GGATTCATGAACACAAAATA+AGG 0.356896 4:+7302192 None:intergenic
CCAAGGTCTCGGAGACAAAT+AGG 0.357156 4:+7306490 None:intergenic
GAAGCTTGTTTCTTGGTAAT+GGG 0.362820 4:+7302796 None:intergenic
AGGCAGTTATGAAAGAATTT+GGG 0.373459 4:-7306164 MsG0480018607.01.T01:CDS
TGGAAGGTGTTCAATTCGTT+CGG 0.374308 4:-7306354 MsG0480018607.01.T01:CDS
ACATCACAAAGATGCACTAT+AGG 0.375350 4:+7301608 None:intergenic
TCTCTACAAGTCGTTCCTTC+CGG 0.391720 4:+7302339 None:intergenic
TAAAAGCCGTTGCGCTTTCA+AGG 0.395510 4:-7302425 MsG0480018607.01.T01:CDS
GTTGTTACAGGAGTTGCATT+AGG 0.400843 4:-7302507 MsG0480018607.01.T01:CDS
CCGGATCTAAAACTGTTCTA+TGG 0.400923 4:+7302529 None:intergenic
GAGGGCAAGTGGGTTTGTTA+AGG 0.407100 4:-7306220 MsG0480018607.01.T01:CDS
TGGTACAATTATAAATTACT+TGG 0.415906 4:-7302627 MsG0480018607.01.T01:CDS
ACCTTCTTATGGATGCCAAT+TGG 0.419088 4:-7302708 MsG0480018607.01.T01:CDS
TTGAACACCTTCCATGTCTC+TGG 0.423670 4:+7306363 None:intergenic
TTAGAAATTGGTGGGAAAAG+TGG 0.430405 4:+7306681 None:intergenic
AGTGCGACGAGCATGTAGTA+TGG 0.432920 4:+7306579 None:intergenic
GGAAGGTGTTCAATTCGTTC+GGG 0.434242 4:-7306353 MsG0480018607.01.T01:CDS
CACGGCTAGTCCAAGGTTGA+TGG 0.435779 4:-7306316 MsG0480018607.01.T01:CDS
GTAGAGAACCATTTCTATTG+AGG 0.438636 4:-7302323 MsG0480018607.01.T01:CDS
GCACTAAACCTCAATAGAAA+TGG 0.442088 4:+7302315 None:intergenic
ATTGAAAGTATGATTCCAAT+TGG 0.443499 4:+7302693 None:intergenic
CTGTCTCCCAGTCCCAAATC+AGG 0.448486 4:+7306129 None:intergenic
CAATTTGCCTGATTTGGGAC+TGG 0.449611 4:-7306136 MsG0480018607.01.T01:CDS
ATGCTCGTCGCACTCGAAGC+TGG 0.455449 4:-7306570 MsG0480018607.01.T01:CDS
AAGAGTGCAAATAGAGGGGT+TGG 0.455638 4:+7302732 None:intergenic
ATGGGATTCTTATGCACAAA+TGG 0.458400 4:-7301492 MsG0480018607.01.T01:three_prime_UTR
TCCAATTGGCATCCATAAGA+AGG 0.458669 4:+7302707 None:intergenic
AAAATTTCCTCCATTTGTCA+TGG 0.460136 4:-7306712 MsG0480018607.01.T01:exon
GGTGCTAGGGACTGAATTGA+TGG 0.464183 4:-7306256 MsG0480018607.01.T01:CDS
AACTTTGAAATTAAACATCA+TGG 0.466576 4:+7301752 None:intergenic
AGATGTAACAATGTGGCATA+TGG 0.467889 4:-7301511 MsG0480018607.01.T01:three_prime_UTR
AATTTGCCTGATTTGGGACT+GGG 0.468437 4:-7306135 MsG0480018607.01.T01:CDS
AATGGGTCACATTTAGTCCT+TGG 0.469115 4:+7302813 None:intergenic
AAGGAACCAGGAGTTCTTGT+TGG 0.472018 4:-7306201 MsG0480018607.01.T01:CDS
TAGTTGATTTATGTTGTTGA+GGG 0.473744 4:-7301639 MsG0480018607.01.T01:three_prime_UTR
CAAAGAAAGATTAAAATTGA+AGG 0.475845 4:-7301975 MsG0480018607.01.T01:exon
TGCTTCGTATTAATCGCGAC+AGG 0.478003 4:+7302261 None:intergenic
TTTCTCGGTCAGTGTTGCCT+AGG 0.478351 4:-7306407 MsG0480018607.01.T01:CDS
TTGTCACATTCGCGGGGCTA+AGG 0.481220 4:-7306449 MsG0480018607.01.T01:CDS
TTGGGAGTAGATAAGGTGCT+AGG 0.486623 4:-7306270 MsG0480018607.01.T01:CDS
AAATTTCCTCCATTTGTCAT+GGG 0.486963 4:-7306711 MsG0480018607.01.T01:exon
TGCTACATTTAGAAATTGGT+GGG 0.489746 4:+7306673 None:intergenic
TTAATCTTTGTCACATTCGC+GGG 0.496943 4:-7306456 MsG0480018607.01.T01:CDS
ATAAAGAAATTGCTTGAAGA+AGG 0.497977 4:-7302378 MsG0480018607.01.T01:CDS
GGCTCGCGGACACAAATTGT+TGG 0.498712 4:-7302217 MsG0480018607.01.T01:CDS
TTGTGAGGGAAATATGGAAT+TGG 0.500040 4:+7306769 None:intergenic
CTAAGTCGGATGCGACGGTT+TGG 0.500319 4:+7306634 None:intergenic
AATGCAACTCCTGTAACAAC+CGG 0.501114 4:+7302510 None:intergenic
GAAATATATGAAAGGGACTA+AGG 0.501854 4:+7306518 None:intergenic
CACATTACAGGAAGGATACA+TGG 0.503595 4:-7302838 MsG0480018607.01.T01:intron
AGTTGCAAATTATATTCAAA+GGG 0.504087 4:-7302091 MsG0480018607.01.T01:CDS
AAGTTGCAAATTATATTCAA+AGG 0.504845 4:-7302092 MsG0480018607.01.T01:CDS
ATGCACTTCGCGACACGAGA+AGG 0.506648 4:+7306604 None:intergenic
TGTTCACCAACAAGAACTCC+TGG 0.509031 4:+7306195 None:intergenic
AAGAAAGTGATCTCATAAGT+TGG 0.509395 4:+7302165 None:intergenic
GCTATTCTTGCAGGAACAGA+TGG 0.510039 4:-7302012 MsG0480018607.01.T01:CDS
GGAATAAGAGTAATTAGAAA+AGG 0.510705 4:-7302606 MsG0480018607.01.T01:CDS
CCTATTTGTCTCCGAGACCT+TGG 0.512360 4:-7306490 MsG0480018607.01.T01:CDS
GTGCTACATTTAGAAATTGG+TGG 0.515992 4:+7306672 None:intergenic
AGGTTAAGAGTGCAAATAGA+GGG 0.520148 4:+7302727 None:intergenic
CAAGCTATAGAGATTATAGT+TGG 0.520674 4:+7306797 None:intergenic
CCTTTGGAATTGACTTGCAG+TGG 0.525418 4:-7302132 MsG0480018607.01.T01:CDS
AGGTGACTTAGTGATTTGTC+CGG 0.526292 4:-7302358 MsG0480018607.01.T01:CDS
GGTACGTGAAATATATGAAA+GGG 0.527101 4:+7306511 None:intergenic
GAGACGTGGAGATTGTTTCT+CGG 0.527308 4:-7306422 MsG0480018607.01.T01:CDS
AAGGTTAAGAGTGCAAATAG+AGG 0.530421 4:+7302726 None:intergenic
TGACTTCATGTCTATTTGCA+AGG 0.539001 4:-7306094 MsG0480018607.01.T01:intron
ATATTCAAAGGGTTCTTGGA+GGG 0.546066 4:-7302080 MsG0480018607.01.T01:CDS
TGTTGGTGAACACAAGAAAG+AGG 0.548662 4:-7306184 MsG0480018607.01.T01:CDS
TGGGAGTAGATAAGGTGCTA+GGG 0.549005 4:-7306269 MsG0480018607.01.T01:CDS
GTAGTTGATTTATGTTGTTG+AGG 0.551188 4:-7301640 MsG0480018607.01.T01:three_prime_UTR
AGTGGGTTTGTTAAGGAACC+AGG 0.551989 4:-7306213 MsG0480018607.01.T01:CDS
AATGGCTCAACCATCAACCT+TGG 0.553342 4:+7306306 None:intergenic
TGTCTCTGGATGCACGTCCT+CGG 0.553696 4:+7306377 None:intergenic
ATGTACCAATTTAACAAGGA+AGG 0.557734 4:-7302043 MsG0480018607.01.T01:CDS
TATATTCAAAGGGTTCTTGG+AGG 0.558009 4:-7302081 MsG0480018607.01.T01:CDS
TGCACTTCGCGACACGAGAA+GGG 0.558723 4:+7306605 None:intergenic
AAAAGCCGTTGCGCTTTCAA+GGG 0.561930 4:-7302424 MsG0480018607.01.T01:CDS
TGGAATTGACTTGCAGTGGA+GGG 0.564415 4:-7302128 MsG0480018607.01.T01:CDS
AGGTACGTGAAATATATGAA+AGG 0.567264 4:+7306510 None:intergenic
TTGGAATTGACTTGCAGTGG+AGG 0.571130 4:-7302129 MsG0480018607.01.T01:CDS
AAAGAAAGATTAAAATTGAA+GGG 0.571255 4:-7301974 MsG0480018607.01.T01:exon
AATTTCCTCCATTTGTCATG+GGG 0.573194 4:-7306710 MsG0480018607.01.T01:exon
GACAATCCTATCCGTTAACT+CGG 0.578226 4:+7302284 None:intergenic
ATTAATCTTTGTCACATTCG+CGG 0.578687 4:-7306457 MsG0480018607.01.T01:CDS
GTGATCTCATAAGTTGGCAT+AGG 0.582217 4:+7302171 None:intergenic
GGTTAAGAGTGCAAATAGAG+GGG 0.592460 4:+7302728 None:intergenic
ACCGTCTAAGTCGGATGCGA+CGG 0.594019 4:+7306629 None:intergenic
TCGTCGCTAAATGTTAAAGA+CGG 0.595020 4:-7301851 MsG0480018607.01.T01:three_prime_UTR
AGGACGTGCATCCAGAGACA+TGG 0.604083 4:-7306374 MsG0480018607.01.T01:CDS
TCTTTCCCTTGAAAGCGCAA+CGG 0.605263 4:+7302419 None:intergenic
ACATTGTCACGGCTAGTCCA+AGG 0.617998 4:-7306323 MsG0480018607.01.T01:CDS
GTTGCCTAGGTTCTATGCCG+AGG 0.628644 4:-7306394 MsG0480018607.01.T01:CDS
GATGTAACAATGTGGCATAT+GGG 0.632032 4:-7301510 MsG0480018607.01.T01:three_prime_UTR
GCTTCGTATTAATCGCGACA+GGG 0.633339 4:+7302262 None:intergenic
ATTTCCTCCATTTGTCATGG+GGG 0.637687 4:-7306709 MsG0480018607.01.T01:exon
CCACTGCAAGTCAATTCCAA+AGG 0.649071 4:+7302132 None:intergenic
GACTTAGTGATTTGTCCGGA+AGG 0.655073 4:-7302354 MsG0480018607.01.T01:CDS
ACGTCCTCGGCATAGAACCT+AGG 0.656526 4:+7306390 None:intergenic
TTGAATGTACCAATTTAACA+AGG 0.660163 4:-7302047 MsG0480018607.01.T01:CDS
GAGAAGGGTACCGTCTAAGT+CGG 0.661088 4:+7306620 None:intergenic
AATTGGTGGGAAAAGTGGAA+AGG 0.662471 4:+7306686 None:intergenic
ACCGTCGCATCCGACTTAGA+CGG 0.666373 4:-7306630 MsG0480018607.01.T01:CDS
TAATCTTTGTCACATTCGCG+GGG 0.673980 4:-7306455 MsG0480018607.01.T01:CDS
AGGAAGGATACATGGTACCA+AGG 0.676497 4:-7302830 MsG0480018607.01.T01:CDS
CGGGAAACGATACATTGTCA+CGG 0.691995 4:-7306334 MsG0480018607.01.T01:CDS
CGTGCATCCAGAGACATGGA+AGG 0.693169 4:-7306370 MsG0480018607.01.T01:CDS
GGGGCTAAGGATAAGAGACG+TGG 0.717767 4:-7306436 MsG0480018607.01.T01:CDS
AAGGGAAAGAGATAGAGATG+CGG 0.731861 4:-7302406 MsG0480018607.01.T01:CDS
CTGATTGAGATGTAACAATG+TGG 0.770996 4:-7301518 MsG0480018607.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAAAAATACATAGTT+AGG + Chr4:7304973-7304992 None:intergenic 10.0%
!! TGATGATTATTAAATTATAT+CGG - Chr4:7303720-7303739 MsG0480018607.01.T01:intron 10.0%
!!! ATGAATGTTTTATTAATTAA+TGG - Chr4:7302499-7302518 MsG0480018607.01.T01:CDS 10.0%
!!! TTTTTTAAAACACAATATTA+CGG - Chr4:7304678-7304697 MsG0480018607.01.T01:intron 10.0%
!! AAAGAAAGATTAAAATTGAA+GGG - Chr4:7306305-7306324 MsG0480018607.01.T01:CDS 15.0%
!! AACTAACACATTATATAATT+TGG + Chr4:7302290-7302309 None:intergenic 15.0%
!! ATAACAAAAATATACATGAA+TGG + Chr4:7302758-7302777 None:intergenic 15.0%
!! CAAAAACATGATAAATAAAT+AGG + Chr4:7302732-7302751 None:intergenic 15.0%
!! GTACATAATATGTTATATTT+AGG + Chr4:7306597-7306616 None:intergenic 15.0%
!! TAAAATTGAGAAATCAAAAT+AGG + Chr4:7303447-7303466 None:intergenic 15.0%
!! TAATAGACTATAATTTAGAA+TGG - Chr4:7302577-7302596 MsG0480018607.01.T01:CDS 15.0%
!! TATAAAACATCAATAAAGTT+AGG + Chr4:7303973-7303992 None:intergenic 15.0%
!! TTTGATTAATCAAAATCTAA+TGG - Chr4:7302836-7302855 MsG0480018607.01.T01:intron 15.0%
!!! ATTTTCATACATTTTTTATG+TGG + Chr4:7304462-7304481 None:intergenic 15.0%
!!! TTATATAATGTGTTAGTTTA+TGG - Chr4:7302376-7302395 MsG0480018607.01.T01:CDS 15.0%
!!! TTTTCATCTGTAATTTAATT+TGG + Chr4:7306387-7306406 None:intergenic 15.0%
!!! TTTTTTTTTCAATCTAACTT+AGG - Chr4:7303266-7303285 MsG0480018607.01.T01:intron 15.0%
!! AAATAAAATTTAGGAAGTCT+AGG + Chr4:7304528-7304547 None:intergenic 20.0%
!! AACAAGGACAAATAAAATTT+AGG + Chr4:7304537-7304556 None:intergenic 20.0%
!! AAGTTGCAAATTATATTCAA+AGG - Chr4:7306187-7306206 MsG0480018607.01.T01:CDS 20.0%
!! AATAAAATTTAGGAAGTCTA+GGG + Chr4:7304527-7304546 None:intergenic 20.0%
!! AATCATACTTTCAATCTTAA+GGG - Chr4:7305594-7305613 MsG0480018607.01.T01:intron 20.0%
!! AATGAATTGTATTACAGTTA+TGG - Chr4:7306727-7306746 MsG0480018607.01.T01:five_prime_UTR 20.0%
!! AGAAAAGAAAAAAAAGAACA+AGG + Chr4:7304553-7304572 None:intergenic 20.0%
!! AGAAATAATTAGACAATGTT+TGG + Chr4:7305421-7305440 None:intergenic 20.0%
!! AGTTGCAAATTATATTCAAA+GGG - Chr4:7306188-7306207 MsG0480018607.01.T01:CDS 20.0%
!! ATTAAATTGACTACATAAAC+TGG + Chr4:7302679-7302698 None:intergenic 20.0%
!! CAAAGAAAGATTAAAATTGA+AGG - Chr4:7306304-7306323 MsG0480018607.01.T01:CDS 20.0%
!! CAATTATAAAATCAGTTCTA+GGG - Chr4:7304180-7304199 MsG0480018607.01.T01:intron 20.0%
!! CTAAAAAAATGAATTATCGA+CGG + Chr4:7306494-7306513 None:intergenic 20.0%
!! TGACAACTAAAAAATTATAC+TGG + Chr4:7303059-7303078 None:intergenic 20.0%
!! TGGTACAATTATAAATTACT+TGG - Chr4:7305652-7305671 MsG0480018607.01.T01:intron 20.0%
!! TTATGATAACTTTATGAGTT+TGG + Chr4:7304941-7304960 None:intergenic 20.0%
!! TTTCTTCTTCTGTATATTAT+TGG + Chr4:7304136-7304155 None:intergenic 20.0%
!!! AAAGAGTACTACTAAATAAT+AGG + Chr4:7304420-7304439 None:intergenic 20.0%
!!! AACTTTAGAGAACAAAAAAA+TGG + Chr4:7303945-7303964 None:intergenic 20.0%
!!! AACTTTGAAATTAAACATCA+TGG + Chr4:7306530-7306549 None:intergenic 20.0%
!!! ATTTTTGTAGATGTGATATT+AGG - Chr4:7303389-7303408 MsG0480018607.01.T01:intron 20.0%
!!! CTGTATTTTATCTTTTGTTA+TGG - Chr4:7305357-7305376 MsG0480018607.01.T01:intron 20.0%
!!! GTTTTAGGTGAAAAAAAAAT+AGG + Chr4:7303327-7303346 None:intergenic 20.0%
!!! TCTTTTTCAAATTTCTGTTT+TGG - Chr4:7303628-7303647 MsG0480018607.01.T01:intron 20.0%
!!! TTTTAGTTGTCACAAATTAA+GGG - Chr4:7303067-7303086 MsG0480018607.01.T01:intron 20.0%
!!! TTTTATAGGCGAAATTATTT+CGG + Chr4:7305839-7305858 None:intergenic 20.0%
!!! TTTTTAGTTGTCACAAATTA+AGG - Chr4:7303066-7303085 MsG0480018607.01.T01:intron 20.0%
!!! TTTTTGTAGATGTGATATTA+GGG - Chr4:7303390-7303409 MsG0480018607.01.T01:intron 20.0%
! AAATTATCAGTTCATAGACT+AGG + Chr4:7305021-7305040 None:intergenic 25.0%
! AATAAATAGGCAGATAGATA+TGG + Chr4:7302719-7302738 None:intergenic 25.0%
! AATTATATTCAAAGGGTTCT+TGG - Chr4:7306195-7306214 MsG0480018607.01.T01:CDS 25.0%
! AATTGGAAGATATCCAATTA+GGG + Chr4:7304165-7304184 None:intergenic 25.0%
! AGACATAAATTTAAGGAAAG+AGG + Chr4:7303810-7303829 None:intergenic 25.0%
! AGTACTACTAAATAATAGGT+TGG + Chr4:7304416-7304435 None:intergenic 25.0%
! ATAAAATTTAGGAAGTCTAG+GGG + Chr4:7304526-7304545 None:intergenic 25.0%
! ATAAAGAAATTGCTTGAAGA+AGG - Chr4:7305901-7305920 MsG0480018607.01.T01:intron 25.0%
! ATACTGTCATATGGTAATAT+TGG + Chr4:7304878-7304897 None:intergenic 25.0%
! ATGTGATATTAGGGATTTAA+AGG - Chr4:7303399-7303418 MsG0480018607.01.T01:intron 25.0%
! ATTGAGAAATCAAAATAGGA+AGG + Chr4:7303443-7303462 None:intergenic 25.0%
! CAACTAAAAAATTATACTGG+AGG + Chr4:7303056-7303075 None:intergenic 25.0%
! CAATATTACGGATAATACTT+TGG - Chr4:7304690-7304709 MsG0480018607.01.T01:intron 25.0%
! CAGATAGATATGGATATATT+AGG + Chr4:7302709-7302728 None:intergenic 25.0%
! CATATTCATAAGTTGTATTC+AGG - Chr4:7305282-7305301 MsG0480018607.01.T01:intron 25.0%
! CCAATTATAAAATCAGTTCT+AGG - Chr4:7304179-7304198 MsG0480018607.01.T01:intron 25.0%
! CGAAAACAGACATAAATTTA+AGG + Chr4:7303817-7303836 None:intergenic 25.0%
! GAAGAAAAAAAATCCCTAAT+TGG - Chr4:7304149-7304168 MsG0480018607.01.T01:intron 25.0%
! GAATCATACTTTCAATCTTA+AGG - Chr4:7305593-7305612 MsG0480018607.01.T01:intron 25.0%
! GGAATAAGAGTAATTAGAAA+AGG - Chr4:7305673-7305692 MsG0480018607.01.T01:intron 25.0%
! GGATATAGAGATGTTAAAAT+GGG + Chr4:7304261-7304280 None:intergenic 25.0%
! TAAAGATAGAAAAAGACAGA+TGG + Chr4:7303887-7303906 None:intergenic 25.0%
! TAATTGGAAGATATCCAATT+AGG + Chr4:7304166-7304185 None:intergenic 25.0%
! TACCCTCATGAAAAATAATT+GGG + Chr4:7305513-7305532 None:intergenic 25.0%
! TACTGTCATATGGTAATATT+GGG + Chr4:7304877-7304896 None:intergenic 25.0%
! TGGATATAGAGATGTTAAAA+TGG + Chr4:7304262-7304281 None:intergenic 25.0%
! TGTGATATTAGGGATTTAAA+GGG - Chr4:7303400-7303419 MsG0480018607.01.T01:intron 25.0%
! TTGAATGTACCAATTTAACA+AGG - Chr4:7306232-7306251 MsG0480018607.01.T01:CDS 25.0%
! TTTAGTTGTCACAAATTAAG+GGG - Chr4:7303068-7303087 MsG0480018607.01.T01:intron 25.0%
! TTTGTGCTACATTTAGAAAT+TGG + Chr4:7301613-7301632 None:intergenic 25.0%
!! AATTATACTGGAGGATATTT+TGG + Chr4:7303047-7303066 None:intergenic 25.0%
!! AATTGATGGTTACAAAAACA+GGG - Chr4:7302037-7302056 MsG0480018607.01.T01:CDS 25.0%
!! AGACTATAATTTAGAATGGA+TGG - Chr4:7302581-7302600 MsG0480018607.01.T01:CDS 25.0%
!! AGTCATATTTCACAAGTTTT+AGG + Chr4:7303342-7303361 None:intergenic 25.0%
!! ATTGAAAGTATGATTCCAAT+TGG + Chr4:7305589-7305608 None:intergenic 25.0%
!! CATTTTATCATACTGTCATA+TGG + Chr4:7304887-7304906 None:intergenic 25.0%
!! CTAATTATTTCTCACATTAC+AGG - Chr4:7305429-7305448 MsG0480018607.01.T01:intron 25.0%
!! TAGTTGATTTATGTTGTTGA+GGG - Chr4:7306640-7306659 MsG0480018607.01.T01:CDS 25.0%
!!! AAGTTTGTTTTATGGAACAT+CGG - Chr4:7306041-7306060 MsG0480018607.01.T01:intron 25.0%
!!! AATGGAGGAAATTTTTTTGA+AGG + Chr4:7301562-7301581 None:intergenic 25.0%
!!! AATTGACTAGTATTTTAGCT+TGG + Chr4:7304212-7304231 None:intergenic 25.0%
!!! ATTGACTAGTATTTTAGCTT+GGG + Chr4:7304211-7304230 None:intergenic 25.0%
!!! CCATTTGTTAAGACATTTTT+GGG - Chr4:7301991-7302010 MsG0480018607.01.T01:CDS 25.0%
!!! CCTAGAACTGATTTTATAAT+TGG + Chr4:7304182-7304201 None:intergenic 25.0%
!!! GTGAAAGTATTTTGAACAAA+TGG - Chr4:7305246-7305265 MsG0480018607.01.T01:intron 25.0%
!!! TTCAAATTTCTGTTTTGGAT+GGG - Chr4:7303633-7303652 MsG0480018607.01.T01:intron 25.0%
!!! TTTCAAATTTCTGTTTTGGA+TGG - Chr4:7303632-7303651 MsG0480018607.01.T01:intron 25.0%
AAAATTTCCTCCATTTGTCA+TGG - Chr4:7301567-7301586 MsG0480018607.01.T01:three_prime_UTR 30.0%
AAATTTCCTCCATTTGTCAT+GGG - Chr4:7301568-7301587 MsG0480018607.01.T01:three_prime_UTR 30.0%
AAGAAAGTGATCTCATAAGT+TGG + Chr4:7306117-7306136 None:intergenic 30.0%
ACAATAACTAAGCTCTCTTT+GGG - Chr4:7302884-7302903 MsG0480018607.01.T01:intron 30.0%
ACCCAACATCAAAAAATTAG+GGG + Chr4:7303746-7303765 None:intergenic 30.0%
ACTGTCATATGGTAATATTG+GGG + Chr4:7304876-7304895 None:intergenic 30.0%
AGGCAGTTATGAAAGAATTT+GGG - Chr4:7302115-7302134 MsG0480018607.01.T01:CDS 30.0%
AGGTACGTGAAATATATGAA+AGG + Chr4:7301772-7301791 None:intergenic 30.0%
AGTAACAATTTGCCTGATTT+GGG - Chr4:7302138-7302157 MsG0480018607.01.T01:CDS 30.0%
ATGAACTGATAATTTCCACA+TGG - Chr4:7305026-7305045 MsG0480018607.01.T01:intron 30.0%
ATGTACCAATTTAACAAGGA+AGG - Chr4:7306236-7306255 MsG0480018607.01.T01:CDS 30.0%
ATTAATCTTTGTCACATTCG+CGG - Chr4:7301822-7301841 MsG0480018607.01.T01:three_prime_UTR 30.0%
CAAGCTATAGAGATTATAGT+TGG + Chr4:7301485-7301504 None:intergenic 30.0%
CAATAAACACGATACTGATA+TGG - Chr4:7304025-7304044 MsG0480018607.01.T01:intron 30.0%
CACCCAACATCAAAAAATTA+GGG + Chr4:7303747-7303766 None:intergenic 30.0%
CATAAATTTAAGGAAAGAGG+AGG + Chr4:7303807-7303826 None:intergenic 30.0%
CCCAAAAATGTCTTAACAAA+TGG + Chr4:7301994-7302013 None:intergenic 30.0%
CTACCCTCATGAAAAATAAT+TGG + Chr4:7305514-7305533 None:intergenic 30.0%
CTTATCCTTCCTTGTTAAAT+TGG + Chr4:7306244-7306263 None:intergenic 30.0%
CTTTACCTGAAAAAATTGCT+TGG - Chr4:7305632-7305651 MsG0480018607.01.T01:intron 30.0%
GAAATATATGAAAGGGACTA+AGG + Chr4:7301764-7301783 None:intergenic 30.0%
GGATTCATGAACACAAAATA+AGG + Chr4:7306090-7306109 None:intergenic 30.0%
GGTACGTGAAATATATGAAA+GGG + Chr4:7301771-7301790 None:intergenic 30.0%
GTATGGGTGACATTAAATTT+GGG - Chr4:7304782-7304801 MsG0480018607.01.T01:intron 30.0%
GTCTGTTTGAGAGTTTAAAA+GGG + Chr4:7303193-7303212 None:intergenic 30.0%
TCACCCAACATCAAAAAATT+AGG + Chr4:7303748-7303767 None:intergenic 30.0%
TCTGTTTGAGAGTTTAAAAG+GGG + Chr4:7303192-7303211 None:intergenic 30.0%
TGCTACATTTAGAAATTGGT+GGG + Chr4:7301609-7301628 None:intergenic 30.0%
TGTATGGGTGACATTAAATT+TGG - Chr4:7304781-7304800 MsG0480018607.01.T01:intron 30.0%
TTAGTTGTCACAAATTAAGG+GGG - Chr4:7303069-7303088 MsG0480018607.01.T01:intron 30.0%
TTCTAGATATCACAGATTCA+GGG - Chr4:7304569-7304588 MsG0480018607.01.T01:intron 30.0%
TTTCTAGATATCACAGATTC+AGG - Chr4:7304568-7304587 MsG0480018607.01.T01:intron 30.0%
TTTCTTGAATCAGTTACCTT+TGG - Chr4:7306131-7306150 MsG0480018607.01.T01:CDS 30.0%
! AAGTTGTATTCAGGCTTTTT+AGG - Chr4:7305291-7305310 MsG0480018607.01.T01:intron 30.0%
! AGAAAACCTTAACTGTTTTG+TGG + Chr4:7305079-7305098 None:intergenic 30.0%
! CAAAACAGTTAAGGTTTTCT+AGG - Chr4:7305079-7305098 MsG0480018607.01.T01:intron 30.0%
! GAAAACCTTAACTGTTTTGT+GGG + Chr4:7305078-7305097 None:intergenic 30.0%
! GAATTGATGGTTACAAAAAC+AGG - Chr4:7302036-7302055 MsG0480018607.01.T01:CDS 30.0%
! GTAGTTGATTTATGTTGTTG+AGG - Chr4:7306639-7306658 MsG0480018607.01.T01:CDS 30.0%
! GTTTTCGTGCATAATTTTTC+CGG - Chr4:7303830-7303849 MsG0480018607.01.T01:intron 30.0%
! TTATTTCTCACATTACAGGA+AGG - Chr4:7305433-7305452 MsG0480018607.01.T01:intron 30.0%
! TTTGCTAAGATGTTTTGTGA+GGG + Chr4:7301527-7301546 None:intergenic 30.0%
!! AAGCCCAATTATTTTTCATG+AGG - Chr4:7305507-7305526 MsG0480018607.01.T01:intron 30.0%
!! AGCCCAATTATTTTTCATGA+GGG - Chr4:7305508-7305527 MsG0480018607.01.T01:intron 30.0%
!! ATTAAGGGGGTTTTATATCT+TGG - Chr4:7303082-7303101 MsG0480018607.01.T01:intron 30.0%
!! ATTGAGTTGAGTTGGATTAT+AGG - Chr4:7304229-7304248 MsG0480018607.01.T01:intron 30.0%
!! GCCATTTGTTAAGACATTTT+TGG - Chr4:7301990-7302009 MsG0480018607.01.T01:CDS 30.0%
!! TTGAGTTGAGTTGGATTATA+GGG - Chr4:7304230-7304249 MsG0480018607.01.T01:intron 30.0%
!!! ACGAAGCAAAGTTTGTTTTA+TGG - Chr4:7306033-7306052 MsG0480018607.01.T01:intron 30.0%
!!! CAAGCAATTTTTTCAGGTAA+AGG + Chr4:7305634-7305653 None:intergenic 30.0%
!!! GATTAATGTTTTGATTGCCA+AGG + Chr4:7301809-7301828 None:intergenic 30.0%
!!! TGACTTTTCTGAAACAATTC+AGG - Chr4:7303357-7303376 MsG0480018607.01.T01:intron 30.0%
!!! TTGTACCAAGCAATTTTTTC+AGG + Chr4:7305640-7305659 None:intergenic 30.0%
AAACCACCGATATAACTTCA+TGG - Chr4:7305052-7305071 MsG0480018607.01.T01:intron 35.0%
AAATGGACCATGGTTTGAAT+TGG + Chr4:7303928-7303947 None:intergenic 35.0%
AACTGATAATTTCCACATGG+AGG - Chr4:7305029-7305048 MsG0480018607.01.T01:intron 35.0%
AATGGACCATGGTTTGAATT+GGG + Chr4:7303927-7303946 None:intergenic 35.0%
AATTTCCTCCATTTGTCATG+GGG - Chr4:7301569-7301588 MsG0480018607.01.T01:three_prime_UTR 35.0%
ACATCACAAAGATGCACTAT+AGG + Chr4:7306674-7306693 None:intergenic 35.0%
AGATGTAACAATGTGGCATA+TGG - Chr4:7306768-7306787 MsG0480018607.01.T01:five_prime_UTR 35.0%
ATATTCAAAGGGTTCTTGGA+GGG - Chr4:7306199-7306218 MsG0480018607.01.T01:CDS 35.0%
ATGAAGAAGTGACACATACA+CGG - Chr4:7304001-7304020 MsG0480018607.01.T01:intron 35.0%
ATGGGATTCTTATGCACAAA+TGG - Chr4:7306787-7306806 MsG0480018607.01.T01:five_prime_UTR 35.0%
CAAGAAAAGGAAGGATGAAA+TGG + Chr4:7303159-7303178 None:intergenic 35.0%
CACAATAACTAAGCTCTCTT+TGG - Chr4:7302883-7302902 MsG0480018607.01.T01:intron 35.0%
CTATCTTTACTAGCTCGTAT+TGG - Chr4:7303898-7303917 MsG0480018607.01.T01:intron 35.0%
CTGATTGAGATGTAACAATG+TGG - Chr4:7306761-7306780 MsG0480018607.01.T01:five_prime_UTR 35.0%
GACTCTAGTATGAACACTTA+AGG + Chr4:7303215-7303234 None:intergenic 35.0%
GAGAACAAAAAAATGGACCA+TGG + Chr4:7303938-7303957 None:intergenic 35.0%
GAGGCAGTTATGAAAGAATT+TGG - Chr4:7302114-7302133 MsG0480018607.01.T01:CDS 35.0%
GAGTAACAATTTGCCTGATT+TGG - Chr4:7302137-7302156 MsG0480018607.01.T01:CDS 35.0%
GATAAGTATGCTATTCTTGC+AGG - Chr4:7306258-7306277 MsG0480018607.01.T01:CDS 35.0%
GATGTAACAATGTGGCATAT+GGG - Chr4:7306769-7306788 MsG0480018607.01.T01:five_prime_UTR 35.0%
GCACTAAACCTCAATAGAAA+TGG + Chr4:7305967-7305986 None:intergenic 35.0%
GCGCACATACACATATATAT+GGG + Chr4:7303573-7303592 None:intergenic 35.0%
GGTCTGTTTGAGAGTTTAAA+AGG + Chr4:7303194-7303213 None:intergenic 35.0%
GGTTGGACATGAGAAATTTA+TGG + Chr4:7304399-7304418 None:intergenic 35.0%
GTAGAGAACCATTTCTATTG+AGG - Chr4:7305956-7305975 MsG0480018607.01.T01:intron 35.0%
GTGCATCTTTGTGATGTAAA+AGG - Chr4:7306677-7306696 MsG0480018607.01.T01:CDS 35.0%
GTGCTACATTTAGAAATTGG+TGG + Chr4:7301610-7301629 None:intergenic 35.0%
TATATTCAAAGGGTTCTTGG+AGG - Chr4:7306198-7306217 MsG0480018607.01.T01:CDS 35.0%
TCACTATGTTGAGATGTGAT+TGG + Chr4:7304282-7304301 None:intergenic 35.0%
TCGTCGCTAAATGTTAAAGA+CGG - Chr4:7306428-7306447 MsG0480018607.01.T01:CDS 35.0%
TGACTTCATGTCTATTTGCA+AGG - Chr4:7302185-7302204 MsG0480018607.01.T01:CDS 35.0%
TGCGCACATACACATATATA+TGG + Chr4:7303574-7303593 None:intergenic 35.0%
TTAATCTTTGTCACATTCGC+GGG - Chr4:7301823-7301842 MsG0480018607.01.T01:three_prime_UTR 35.0%
TTAGAAATTGGTGGGAAAAG+TGG + Chr4:7301601-7301620 None:intergenic 35.0%
TTGCACTCTTAACCTTCTTA+TGG - Chr4:7305560-7305579 MsG0480018607.01.T01:intron 35.0%
TTGTGAGGGAAATATGGAAT+TGG + Chr4:7301513-7301532 None:intergenic 35.0%
TTTATGTGGTACAAGCTGTA+CGG + Chr4:7304448-7304467 None:intergenic 35.0%
! AAGGTTAAGAGTGCAAATAG+AGG + Chr4:7305556-7305575 None:intergenic 35.0%
! AGAAGCTTGTTTCTTGGTAA+TGG + Chr4:7305487-7305506 None:intergenic 35.0%
! AGGTTAAGAGTGCAAATAGA+GGG + Chr4:7305555-7305574 None:intergenic 35.0%
! ATTGGTTTACTCTGTTGTAC+CGG + Chr4:7304118-7304137 None:intergenic 35.0%
! GAAGCTTGTTTCTTGGTAAT+GGG + Chr4:7305486-7305505 None:intergenic 35.0%
! GATGTTTTGTGAGGGAAATA+TGG + Chr4:7301519-7301538 None:intergenic 35.0%
!! ACTAGTCAATTGAGTTGAGT+TGG - Chr4:7304221-7304240 MsG0480018607.01.T01:intron 35.0%
!! ATACTGGAGGATATTTTGGA+TGG + Chr4:7303043-7303062 None:intergenic 35.0%
!! GACATTTTTGGGAGTAGATA+AGG - Chr4:7302002-7302021 MsG0480018607.01.T01:CDS 35.0%
!! GAGGATATTTTGGATGGTTT+GGG + Chr4:7303037-7303056 None:intergenic 35.0%
!! GTTTGCTAAGATGTTTTGTG+AGG + Chr4:7301528-7301547 None:intergenic 35.0%
!! TGTATGTGTCACTTCTTCAT+AGG + Chr4:7304001-7304020 None:intergenic 35.0%
!! TTCAATCAAAAGTATCGTGC+CGG - Chr4:7304096-7304115 MsG0480018607.01.T01:intron 35.0%
!!! AACACCACTTTGACCTTTTT+TGG + Chr4:7305716-7305735 None:intergenic 35.0%
!!! ACACCACTTTGACCTTTTTT+GGG + Chr4:7305715-7305734 None:intergenic 35.0%
!!! CCATAGAACAGTTTTAGATC+CGG - Chr4:7305750-7305769 MsG0480018607.01.T01:intron 35.0%
!!! GCCCCTAATTTTTTGATGTT+GGG - Chr4:7303742-7303761 MsG0480018607.01.T01:intron 35.0%
AAGGGAAAGAGATAGAGATG+CGG - Chr4:7305873-7305892 MsG0480018607.01.T01:intron 40.0%
AAGTCTAGGGGAATATCACA+AGG + Chr4:7304514-7304533 None:intergenic 40.0%
AATGCAACTCCTGTAACAAC+CGG + Chr4:7305772-7305791 None:intergenic 40.0%
AATTGGTGGGAAAAGTGGAA+AGG + Chr4:7301596-7301615 None:intergenic 40.0%
ACAAGGATTGTGCTTGCTTA+TGG + Chr4:7304497-7304516 None:intergenic 40.0%
ACACAAAAGGTTGTGTTGTG+TGG - Chr4:7304747-7304766 MsG0480018607.01.T01:intron 40.0%
ACACAAATGTGTGTGTTGTG+TGG - Chr4:7304807-7304826 MsG0480018607.01.T01:intron 40.0%
ACACAACACACACATTTGTG+TGG + Chr4:7304808-7304827 None:intergenic 40.0%
ACCTTCTTATGGATGCCAAT+TGG - Chr4:7305571-7305590 MsG0480018607.01.T01:intron 40.0%
ATAGATGATTTCGAGAGCAG+AGG + Chr4:7303131-7303150 None:intergenic 40.0%
ATGGACCATGGTTTGAATTG+GGG + Chr4:7303926-7303945 None:intergenic 40.0%
ATTTCCTCCATTTGTCATGG+GGG - Chr4:7301570-7301589 MsG0480018607.01.T01:three_prime_UTR 40.0%
CACATTACAGGAAGGATACA+TGG - Chr4:7305441-7305460 MsG0480018607.01.T01:intron 40.0%
CATGTTCCATGTGTAACAAG+AGG + Chr4:7302464-7302483 None:intergenic 40.0%
CTAGATCCTCTTGTTACACA+TGG - Chr4:7302455-7302474 MsG0480018607.01.T01:CDS 40.0%
GACAATCCTATCCGTTAACT+CGG + Chr4:7305998-7306017 None:intergenic 40.0%
GAGAGCTTTCAAGAAAAGGA+AGG + Chr4:7303168-7303187 None:intergenic 40.0%
GATGGTTACAAAAACAGGGA+GGG - Chr4:7302041-7302060 MsG0480018607.01.T01:CDS 40.0%
GTCACCGTGACATTAAATCT+GGG - Chr4:7304722-7304741 MsG0480018607.01.T01:intron 40.0%
GTCACCGTGACATTAAATCT+GGG + Chr4:7304741-7304722 None:intergenic 40.0%
GTCATATGGTAATATTGGGG+TGG + Chr4:7304873-7304892 None:intergenic 40.0%
GTTGTTACAGGAGTTGCATT+AGG - Chr4:7305772-7305791 MsG0480018607.01.T01:intron 40.0%
TAATCTTTGTCACATTCGCG+GGG - Chr4:7301824-7301843 MsG0480018607.01.T01:three_prime_UTR 40.0%
TAGATGATTTCGAGAGCAGA+GGG + Chr4:7303130-7303149 None:intergenic 40.0%
TCCAATTGGCATCCATAAGA+AGG + Chr4:7305575-7305594 None:intergenic 40.0%
TGATGGTTACAAAAACAGGG+AGG - Chr4:7302040-7302059 MsG0480018607.01.T01:CDS 40.0%
TGTCACCGTGACATTAAATC+TGG - Chr4:7304721-7304740 MsG0480018607.01.T01:intron 40.0%
TGTCACCGTGACATTAAATC+TGG + Chr4:7304740-7304721 None:intergenic 40.0%
TGTGGGCCATGAAGTTATAT+CGG + Chr4:7305061-7305080 None:intergenic 40.0%
TTAAATCTGGGCCACACAAA+AGG - Chr4:7304734-7304753 MsG0480018607.01.T01:intron 40.0%
! ACACAACACAACCTTTTGTG+TGG + Chr4:7304748-7304767 None:intergenic 40.0%
! AGGTGACTTAGTGATTTGTC+CGG - Chr4:7305921-7305940 MsG0480018607.01.T01:intron 40.0%
! CAGGGACTTTTTGTTGAGTA+AGG - Chr4:7304587-7304606 MsG0480018607.01.T01:intron 40.0%
! CCGGATCTAAAACTGTTCTA+TGG + Chr4:7305753-7305772 None:intergenic 40.0%
! GGTTAAGAGTGCAAATAGAG+GGG + Chr4:7305554-7305573 None:intergenic 40.0%
! GTGATCTCATAAGTTGGCAT+AGG + Chr4:7306111-7306130 None:intergenic 40.0%
! TGCTCTTTTTGCCGAGTTAA+CGG - Chr4:7305984-7306003 MsG0480018607.01.T01:intron 40.0%
! TGTTGGTGAACACAAGAAAG+AGG - Chr4:7302095-7302114 MsG0480018607.01.T01:CDS 40.0%
! TTCGTGCATAATTTTTCCGG+TGG - Chr4:7303833-7303852 MsG0480018607.01.T01:intron 40.0%
! TTTGGATGGTTTGGGAGATT+CGG + Chr4:7303029-7303048 None:intergenic 40.0%
!! AAGGGGGTTTTATATCTTGG+AGG - Chr4:7303085-7303104 MsG0480018607.01.T01:intron 40.0%
!! AATTTGCCTGATTTGGGACT+GGG - Chr4:7302144-7302163 MsG0480018607.01.T01:CDS 40.0%
!! AGGGGGTTTTATATCTTGGA+GGG - Chr4:7303086-7303105 MsG0480018607.01.T01:intron 40.0%
!! ATGTGTCACTTCTTCATAGG+TGG + Chr4:7303998-7304017 None:intergenic 40.0%
!! GGAGGATATTTTGGATGGTT+TGG + Chr4:7303038-7303057 None:intergenic 40.0%
!! GGCACGATACTTTTGATTGA+AGG + Chr4:7304097-7304116 None:intergenic 40.0%
!! GTTTTAGATCCGGTTGTTAC+AGG - Chr4:7305760-7305779 MsG0480018607.01.T01:intron 40.0%
!! TGGAAGGTGTTCAATTCGTT+CGG - Chr4:7301925-7301944 MsG0480018607.01.T01:three_prime_UTR 40.0%
!! TTTTTGCCGAGTTAACGGAT+AGG - Chr4:7305989-7306008 MsG0480018607.01.T01:intron 40.0%
!!! CAAATAGAGGGGTTGGTTTT+TGG + Chr4:7305543-7305562 None:intergenic 40.0%
!!! GGCCCCTAATTTTTTGATGT+TGG - Chr4:7303741-7303760 MsG0480018607.01.T01:intron 40.0%
!!! TGTTTTGATTGCCAAGGTCT+CGG + Chr4:7301803-7301822 None:intergenic 40.0%
AAAAGCCGTTGCGCTTTCAA+GGG - Chr4:7305855-7305874 MsG0480018607.01.T01:intron 45.0%
AAAGGAAGGGGAGAACTTTG+GGG - Chr4:7302919-7302938 MsG0480018607.01.T01:intron 45.0%
AAGGAACCAGGAGTTCTTGT+TGG - Chr4:7302078-7302097 MsG0480018607.01.T01:CDS 45.0%
AATGGCTCAACCATCAACCT+TGG + Chr4:7301976-7301995 None:intergenic 45.0%
CATGGCCCACAAAACAGTTA+AGG - Chr4:7305070-7305089 MsG0480018607.01.T01:intron 45.0%
CCACCCAAAAAAGGTCAAAG+TGG - Chr4:7305709-7305728 MsG0480018607.01.T01:intron 45.0%
CCACTGCAAGTCAATTCCAA+AGG + Chr4:7306150-7306169 None:intergenic 45.0%
CGGGAAACGATACATTGTCA+CGG - Chr4:7301945-7301964 MsG0480018607.01.T01:three_prime_UTR 45.0%
GAAAGGAAGGGGAGAACTTT+GGG - Chr4:7302918-7302937 MsG0480018607.01.T01:intron 45.0%
GCTATTCTTGCAGGAACAGA+TGG - Chr4:7306267-7306286 MsG0480018607.01.T01:CDS 45.0%
GCTTCGTATTAATCGCGACA+GGG + Chr4:7306020-7306039 None:intergenic 45.0%
GGGAGAGAGCTTTCAAGAAA+AGG + Chr4:7303172-7303191 None:intergenic 45.0%
GTAATATTGGGGTGGCACTT+TGG + Chr4:7304865-7304884 None:intergenic 45.0%
GTCACCCATACAACACATCT+AGG + Chr4:7304773-7304792 None:intergenic 45.0%
GTGGCCCAGATTTAATGTCA+CGG - Chr4:7304826-7304845 MsG0480018607.01.T01:intron 45.0%
GTGGCCCAGATTTAATGTCA+CGG + Chr4:7304845-7304826 None:intergenic 45.0%
GTGGCCTAGATGTGTTGTAT+GGG - Chr4:7304766-7304785 MsG0480018607.01.T01:intron 45.0%
TAAAAGCCGTTGCGCTTTCA+AGG - Chr4:7305854-7305873 MsG0480018607.01.T01:intron 45.0%
TCTCTACAAGTCGTTCCTTC+CGG + Chr4:7305943-7305962 None:intergenic 45.0%
TGCTTCGTATTAATCGCGAC+AGG + Chr4:7306021-7306040 None:intergenic 45.0%
TGGACCATGGTTTGAATTGG+GGG + Chr4:7303925-7303944 None:intergenic 45.0%
TGTGGCCTAGATGTGTTGTA+TGG - Chr4:7304765-7304784 MsG0480018607.01.T01:intron 45.0%
TGTTCACCAACAAGAACTCC+TGG + Chr4:7302087-7302106 None:intergenic 45.0%
TTGAACACCTTCCATGTCTC+TGG + Chr4:7301919-7301938 None:intergenic 45.0%
! AAGAGTGCAAATAGAGGGGT+TGG + Chr4:7305550-7305569 None:intergenic 45.0%
! GACTTAGTGATTTGTCCGGA+AGG - Chr4:7305925-7305944 MsG0480018607.01.T01:intron 45.0%
! GAGACGTGGAGATTGTTTCT+CGG - Chr4:7301857-7301876 MsG0480018607.01.T01:three_prime_UTR 45.0%
! GGGCTTAGAAGCTTGTTTCT+TGG + Chr4:7305493-7305512 None:intergenic 45.0%
! TCTTTCCCTTGAAAGCGCAA+CGG + Chr4:7305863-7305882 None:intergenic 45.0%
! TGGGAGTAGATAAGGTGCTA+GGG - Chr4:7302010-7302029 MsG0480018607.01.T01:CDS 45.0%
! TTCGAGAGCAGAGGGTTTTT+GGG + Chr4:7303122-7303141 None:intergenic 45.0%
! TTGGGAGTAGATAAGGTGCT+AGG - Chr4:7302009-7302028 MsG0480018607.01.T01:CDS 45.0%
! TTTCGAGAGCAGAGGGTTTT+TGG + Chr4:7303123-7303142 None:intergenic 45.0%
!! AGTGGGTTTGTTAAGGAACC+AGG - Chr4:7302066-7302085 MsG0480018607.01.T01:CDS 45.0%
!! CAATTTGCCTGATTTGGGAC+TGG - Chr4:7302143-7302162 MsG0480018607.01.T01:CDS 45.0%
!! CCTTTGGAATTGACTTGCAG+TGG - Chr4:7306147-7306166 MsG0480018607.01.T01:CDS 45.0%
!! GAAAGCGCAACGGCTTTTAT+AGG + Chr4:7305853-7305872 None:intergenic 45.0%
!! GGAAGGTGTTCAATTCGTTC+GGG - Chr4:7301926-7301945 MsG0480018607.01.T01:three_prime_UTR 45.0%
!! TGGAATTGACTTGCAGTGGA+GGG - Chr4:7306151-7306170 MsG0480018607.01.T01:CDS 45.0%
!! TTGGAATTGACTTGCAGTGG+AGG - Chr4:7306150-7306169 MsG0480018607.01.T01:CDS 45.0%
!!! CCACTTTGACCTTTTTTGGG+TGG + Chr4:7305712-7305731 None:intergenic 45.0%
!!! CTTTGACCTTTTTTGGGTGG+TGG + Chr4:7305709-7305728 None:intergenic 45.0%
!!! TTTTATGGAACATCGGCTCG+CGG - Chr4:7306048-7306067 MsG0480018607.01.T01:intron 45.0%
!! ATAAAATTTAATTACATTTA+TGG - Chr4:7304652-7304671 MsG0480018607.01.T01:intron 5.0%
!!! TTTTCAAAAAAAAAATATAT+TGG - Chr4:7302653-7302672 MsG0480018607.01.T01:CDS 5.0%
AAAGACAGATGGAGCAGACC+AGG + Chr4:7303876-7303895 None:intergenic 50.0%
AAGACAGATGGAGCAGACCA+GGG + Chr4:7303875-7303894 None:intergenic 50.0%
ACAAAAACAGGGAGGGCAAG+TGG - Chr4:7302048-7302067 MsG0480018607.01.T01:CDS 50.0%
AGTGCGACGAGCATGTAGTA+TGG + Chr4:7301703-7301722 None:intergenic 50.0%
CAAAAACAGGGAGGGCAAGT+GGG - Chr4:7302049-7302068 MsG0480018607.01.T01:CDS 50.0%
CCAAGGTCTCGGAGACAAAT+AGG + Chr4:7301792-7301811 None:intergenic 50.0%
CCTATTTGTCTCCGAGACCT+TGG - Chr4:7301789-7301808 MsG0480018607.01.T01:three_prime_UTR 50.0%
GGAAAGGAAGGGGAGAACTT+TGG - Chr4:7302917-7302936 MsG0480018607.01.T01:intron 50.0%
GGGCCATGAAGTTATATCGG+TGG + Chr4:7305058-7305077 None:intergenic 50.0%
GGTGCTAGGGACTGAATTGA+TGG - Chr4:7302023-7302042 MsG0480018607.01.T01:CDS 50.0%
TATCGGTGGTTTCCTCCATG+TGG + Chr4:7305044-7305063 None:intergenic 50.0%
TGGTCCCCCAATTCAAACCA+TGG - Chr4:7303918-7303937 MsG0480018607.01.T01:intron 50.0%
TTTCTCGGTCAGTGTTGCCT+AGG - Chr4:7301872-7301891 MsG0480018607.01.T01:three_prime_UTR 50.0%
! ACATTGTCACGGCTAGTCCA+AGG - Chr4:7301956-7301975 MsG0480018607.01.T01:three_prime_UTR 50.0%
! TCGAGAGCAGAGGGTTTTTG+GGG + Chr4:7303121-7303140 None:intergenic 50.0%
!! GAGAAGGGTACCGTCTAAGT+CGG + Chr4:7301662-7301681 None:intergenic 50.0%
!! GAGGGCAAGTGGGTTTGTTA+AGG - Chr4:7302059-7302078 MsG0480018607.01.T01:CDS 50.0%
!!! ACCAGGGGAGCAGTTTTGTT+AGG + Chr4:7303859-7303878 None:intergenic 50.0%
!!! GAGCAGTTTTGTTAGGCCAC+CGG + Chr4:7303852-7303871 None:intergenic 50.0%
!!! TGACCTTTTTTGGGTGGTGG+TGG + Chr4:7305706-7305725 None:intergenic 50.0%
AAGGCCCCCATGACAAATGG+AGG + Chr4:7301577-7301596 None:intergenic 55.0%
ACCGTCGCATCCGACTTAGA+CGG - Chr4:7301649-7301668 MsG0480018607.01.T01:three_prime_UTR 55.0%
ACCGTCTAAGTCGGATGCGA+CGG + Chr4:7301653-7301672 None:intergenic 55.0%
ACGTCCTCGGCATAGAACCT+AGG + Chr4:7301892-7301911 None:intergenic 55.0%
AGACAGATGGAGCAGACCAG+GGG + Chr4:7303874-7303893 None:intergenic 55.0%
AGGACGTGCATCCAGAGACA+TGG - Chr4:7301905-7301924 MsG0480018607.01.T01:three_prime_UTR 55.0%
AGGGTTCTTGGAGGGACTCT+TGG - Chr4:7306207-7306226 MsG0480018607.01.T01:CDS 55.0%
AGTCTCGAGGGGAAAGGAAG+GGG - Chr4:7302907-7302926 MsG0480018607.01.T01:intron 55.0%
ATGCACTTCGCGACACGAGA+AGG + Chr4:7301678-7301697 None:intergenic 55.0%
CCTCCACCACCACCCAAAAA+AGG - Chr4:7305700-7305719 MsG0480018607.01.T01:intron 55.0%
CGTGCATCCAGAGACATGGA+AGG - Chr4:7301909-7301928 MsG0480018607.01.T01:three_prime_UTR 55.0%
CTAAGTCGGATGCGACGGTT+TGG + Chr4:7301648-7301667 None:intergenic 55.0%
CTGTCTCCCAGTCCCAAATC+AGG + Chr4:7302153-7302172 None:intergenic 55.0%
GAGTCTCGAGGGGAAAGGAA+GGG - Chr4:7302906-7302925 MsG0480018607.01.T01:intron 55.0%
GCCTAACAAAACTGCTCCCC+TGG - Chr4:7303855-7303874 MsG0480018607.01.T01:intron 55.0%
GGAAAGGCCCCCATGACAAA+TGG + Chr4:7301580-7301599 None:intergenic 55.0%
GGCTCGCGGACACAAATTGT+TGG - Chr4:7306062-7306081 MsG0480018607.01.T01:intron 55.0%
GGGGCTAAGGATAAGAGACG+TGG - Chr4:7301843-7301862 MsG0480018607.01.T01:three_prime_UTR 55.0%
GTGGTACAAGCTGTACGGCT+TGG + Chr4:7304443-7304462 None:intergenic 55.0%
GTTGCCTAGGTTCTATGCCG+AGG - Chr4:7301885-7301904 MsG0480018607.01.T01:three_prime_UTR 55.0%
TGCACTTCGCGACACGAGAA+GGG + Chr4:7301677-7301696 None:intergenic 55.0%
TGTCTCTGGATGCACGTCCT+CGG + Chr4:7301905-7301924 None:intergenic 55.0%
TTGTCACATTCGCGGGGCTA+AGG - Chr4:7301830-7301849 MsG0480018607.01.T01:three_prime_UTR 55.0%
TTTGGGAGTCTCGAGGGGAA+AGG - Chr4:7302901-7302920 MsG0480018607.01.T01:intron 55.0%
! AGCTCTCTTTGGGAGTCTCG+AGG - Chr4:7302894-7302913 MsG0480018607.01.T01:intron 55.0%
! CACGGCTAGTCCAAGGTTGA+TGG - Chr4:7301963-7301982 MsG0480018607.01.T01:three_prime_UTR 55.0%
! CTCTCTTTGGGAGTCTCGAG+GGG - Chr4:7302896-7302915 MsG0480018607.01.T01:intron 55.0%
! GCTCTCTTTGGGAGTCTCGA+GGG - Chr4:7302895-7302914 MsG0480018607.01.T01:intron 55.0%
!! CGAGAGCAGAGGGTTTTTGG+GGG + Chr4:7303120-7303139 None:intergenic 55.0%
!! GAGAGCAGAGGGTTTTTGGG+GGG + Chr4:7303119-7303138 None:intergenic 55.0%
!!! CCTTTTTTGGGTGGTGGTGG+AGG + Chr4:7305703-7305722 None:intergenic 55.0%
ATGCTCGTCGCACTCGAAGC+TGG - Chr4:7301709-7301728 MsG0480018607.01.T01:three_prime_UTR 60.0%
GGAGTCTCGAGGGGAAAGGA+AGG - Chr4:7302905-7302924 MsG0480018607.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 7301468 7306833 7301468 ID=MsG0480018607.01;Name=MsG0480018607.01
Chr4 mRNA 7301468 7306833 7301468 ID=MsG0480018607.01.T01;Parent=MsG0480018607.01;Name=MsG0480018607.01.T01;_AED=0.31;_eAED=0.31;_QI=118|1|1|1|1|1|2|516|495
Chr4 exon 7301468 7302850 7301468 ID=MsG0480018607.01.T01:exon:2410;Parent=MsG0480018607.01.T01
Chr4 exon 7306095 7306833 7306095 ID=MsG0480018607.01.T01:exon:2409;Parent=MsG0480018607.01.T01
Chr4 five_prime_UTR 7306716 7306833 7306716 ID=MsG0480018607.01.T01:five_prime_utr;Parent=MsG0480018607.01.T01
Chr4 CDS 7306095 7306715 7306095 ID=MsG0480018607.01.T01:cds;Parent=MsG0480018607.01.T01
Chr4 CDS 7301984 7302850 7301984 ID=MsG0480018607.01.T01:cds;Parent=MsG0480018607.01.T01
Chr4 three_prime_UTR 7301468 7301983 7301468 ID=MsG0480018607.01.T01:three_prime_utr;Parent=MsG0480018607.01.T01
Gene Sequence

>MsG0480018607.01.T01

ATGGGGGCCTTTCCACTTTTCCCACCAATTTCTAAATGTAGCACAAAAGATAGATCAAACCAAACCGTCGCATCCGACTTAGACGGTACCCTTCTCGTGTCGCGAAGTGCATTTCCATACTACATGCTCGTCGCACTCGAAGCTGGAAGCATTCTAAGAGCTTTAATTCTCTTATCCTTAGTCCCTTTCATATATTTCACGTACCTATTTGTCTCCGAGACCTTGGCAATCAAAACATTAATCTTTGTCACATTCGCGGGGCTAAGGATAAGAGACGTGGAGATTGTTTCTCGGTCAGTGTTGCCTAGGTTCTATGCCGAGGACGTGCATCCAGAGACATGGAAGGTGTTCAATTCGTTCGGGAAACGATACATTGTCACGGCTAGTCCAAGGTTGATGGTTGAGCCATTTGTTAAGACATTTTTGGGAGTAGATAAGGTGCTAGGGACTGAATTGATGGTTACAAAAACAGGGAGGGCAAGTGGGTTTGTTAAGGAACCAGGAGTTCTTGTTGGTGAACACAAGAAAGAGGCAGTTATGAAAGAATTTGGGAGTAACAATTTGCCTGATTTGGGACTGGGAGACAGTGTAACTGACTCTGACTTCATGTCTATTTGCAAGGAAGGATACATGGTACCAAGGACTAAATGTGACCCATTACCAAGAAACAAGCTTCTAAGCCCAATTATTTTTCATGAGGGTAGATTAGTCCAAAAACCAACCCCTCTATTTGCACTCTTAACCTTCTTATGGATGCCAATTGGAATCATACTTTCAATCTTAAGGGTGTATCTCAACATTCCTTTACCTGAAAAAATTGCTTGGTACAATTATAAATTACTTGGAATAAGAGTAATTAGAAAAGGTACACCTCCACCACCACCCAAAAAAGGTCAAAGTGGTGTTCTATTTGTTTGCAACCATAGAACAGTTTTAGATCCGGTTGTTACAGGAGTTGCATTAGGAAGAAAAATAAGTTGTGTAACTTACAGTATAAGTAAATTCACCGAAATAATTTCGCCTATAAAAGCCGTTGCGCTTTCAAGGGAAAGAGATAGAGATGCGGCAAATATAAAGAAATTGCTTGAAGAAGGTGACTTAGTGATTTGTCCGGAAGGAACGACTTGTAGAGAACCATTTCTATTGAGGTTTAGTGCTCTTTTTGCCGAGTTAACGGATAGGATTGTCCCTGTCGCGATTAATACGAAGCAAAGTTTGTTTTATGGAACATCGGCTCGCGGACACAAATTGTTGGATCCTTATTTTGTGTTCATGAATCCTATGCCAACTTATGAGATCACTTTCTTGAATCAGTTACCTTTGGAATTGACTTGCAGTGGAGGGAAATCTTCAATTGAAGTTGCAAATTATATTCAAAGGGTTCTTGGAGGGACTCTTGGATTTGAATGTACCAATTTAACAAGGAAGGATAAGTATGCTATTCTTGCAGGAACAGATGGAATTGTTAGATCTACAAAGAAAGATTAA
Protein sequence

>MsG0480018607.01.T01

MGAFPLFPPISKCSTKDRSNQTVASDLDGTLLVSRSAFPYYMLVALEAGSILRALILLSLVPFIYFTYLFVSETLAIKTLIFVTFAGLRIRDVEIVSRSVLPRFYAEDVHPETWKVFNSFGKRYIVTASPRLMVEPFVKTFLGVDKVLGTELMVTKTGRASGFVKEPGVLVGEHKKEAVMKEFGSNNLPDLGLGDSVTDSDFMSICKEGYMVPRTKCDPLPRNKLLSPIIFHEGRLVQKPTPLFALLTFLWMPIGIILSILRVYLNIPLPEKIAWYNYKLLGIRVIRKGTPPPPPKKGQSGVLFVCNHRTVLDPVVTGVALGRKISCVTYSISKFTEIISPIKAVALSRERDRDAANIKKLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAINTKQSLFYGTSARGHKLLDPYFVFMNPMPTYEITFLNQLPLELTCSGGKSSIEVANYIQRVLGGTLGFECTNLTRKDKYAILAGTDGIVRSTKKD*