AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001276.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001276.01.T02 MTR_1g034360 92.771 664 26 4 1 654 1 652 0.0 1254
MsG0180001276.01.T02 MTR_4g068670 76.657 664 131 4 1 654 1 650 0.0 1063
MsG0180001276.01.T02 MTR_5g009350 55.204 663 273 5 3 654 4 653 0.0 756
MsG0180001276.01.T02 MTR_5g009350 55.403 657 269 5 3 648 4 647 0.0 750
MsG0180001276.01.T02 MTR_8g099420 54.463 661 277 5 5 654 7 654 0.0 746
MsG0180001276.01.T02 MTR_5g009360 54.683 662 274 6 5 654 6 653 0.0 742
MsG0180001276.01.T02 MTR_5g009350 53.723 564 237 5 3 555 4 554 0.0 616
MsG0180001276.01.T02 MTR_5g009350 54.317 556 230 5 3 547 4 546 0.0 615
MsG0180001276.01.T02 MTR_7g109830 46.526 662 328 6 5 654 4 651 0.0 604
MsG0180001276.01.T02 MTR_5g009360 54.906 530 214 5 137 654 11 527 0.0 599
MsG0180001276.01.T02 MTR_1g086600 44.277 664 342 7 5 654 26 675 0.0 572
MsG0180001276.01.T02 MTR_1g104810 38.363 623 344 11 48 654 18 616 3.18e-139 421
MsG0180001276.01.T02 MTR_1g104810 37.963 648 359 13 26 654 60 683 8.62e-138 419
MsG0180001276.01.T02 MTR_3g082660 31.399 672 383 19 36 654 79 725 9.60e-82 273
MsG0180001276.01.T02 MTR_1g030290 29.421 622 367 18 74 654 103 693 1.34e-74 253
MsG0180001276.01.T02 MTR_3g087980 27.914 695 419 18 12 654 27 691 2.78e-74 252
MsG0180001276.01.T02 MTR_3g084470 25.557 673 397 23 48 654 79 713 6.23e-41 159
MsG0180001276.01.T02 MTR_3g084450 24.780 682 394 23 48 654 81 718 2.11e-40 158
MsG0180001276.01.T02 MTR_3g084450 27.160 486 268 16 229 654 51 510 4.31e-35 139
MsG0180001276.01.T02 MTR_8g083170 24.554 672 410 23 48 654 83 722 9.02e-35 141
MsG0180001276.01.T02 MTR_4g057730 23.862 549 308 22 20 545 3 464 1.06e-19 93.2
MsG0180001276.01.T02 MTR_4g057730 23.862 549 308 22 20 545 3 464 1.18e-19 93.2
MsG0180001276.01.T02 MTR_4g005750 26.023 342 180 12 229 550 180 468 1.01e-14 77.8
MsG0180001276.01.T02 MTR_8g074120 23.810 441 239 18 133 545 47 418 1.08e-14 77.8
MsG0180001276.01.T01 MTR_1g034360 92.771 664 26 4 1 654 1 652 0.0 1254
MsG0180001276.01.T01 MTR_4g068670 76.657 664 131 4 1 654 1 650 0.0 1063
MsG0180001276.01.T01 MTR_5g009350 55.204 663 273 5 3 654 4 653 0.0 756
MsG0180001276.01.T01 MTR_5g009350 55.403 657 269 5 3 648 4 647 0.0 750
MsG0180001276.01.T01 MTR_8g099420 54.463 661 277 5 5 654 7 654 0.0 746
MsG0180001276.01.T01 MTR_5g009360 54.683 662 274 6 5 654 6 653 0.0 742
MsG0180001276.01.T01 MTR_5g009350 53.723 564 237 5 3 555 4 554 0.0 616
MsG0180001276.01.T01 MTR_5g009350 54.317 556 230 5 3 547 4 546 0.0 615
MsG0180001276.01.T01 MTR_7g109830 46.526 662 328 6 5 654 4 651 0.0 604
MsG0180001276.01.T01 MTR_5g009360 54.906 530 214 5 137 654 11 527 0.0 599
MsG0180001276.01.T01 MTR_1g086600 44.277 664 342 7 5 654 26 675 0.0 572
MsG0180001276.01.T01 MTR_1g104810 38.363 623 344 11 48 654 18 616 3.18e-139 421
MsG0180001276.01.T01 MTR_1g104810 37.963 648 359 13 26 654 60 683 8.62e-138 419
MsG0180001276.01.T01 MTR_3g082660 31.399 672 383 19 36 654 79 725 9.60e-82 273
MsG0180001276.01.T01 MTR_1g030290 29.421 622 367 18 74 654 103 693 1.34e-74 253
MsG0180001276.01.T01 MTR_3g087980 27.914 695 419 18 12 654 27 691 2.78e-74 252
MsG0180001276.01.T01 MTR_3g084470 25.557 673 397 23 48 654 79 713 6.23e-41 159
MsG0180001276.01.T01 MTR_3g084450 24.780 682 394 23 48 654 81 718 2.11e-40 158
MsG0180001276.01.T01 MTR_3g084450 27.160 486 268 16 229 654 51 510 4.31e-35 139
MsG0180001276.01.T01 MTR_8g083170 24.554 672 410 23 48 654 83 722 9.02e-35 141
MsG0180001276.01.T01 MTR_4g057730 23.862 549 308 22 20 545 3 464 1.06e-19 93.2
MsG0180001276.01.T01 MTR_4g057730 23.862 549 308 22 20 545 3 464 1.18e-19 93.2
MsG0180001276.01.T01 MTR_4g005750 26.023 342 180 12 229 550 180 468 1.01e-14 77.8
MsG0180001276.01.T01 MTR_8g074120 23.810 441 239 18 133 545 47 418 1.08e-14 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001276.01.T02 AT1G49430 63.994 661 208 8 9 654 11 656 0.0 885
MsG0180001276.01.T02 AT1G64400 53.101 661 287 4 5 654 6 654 0.0 754
MsG0180001276.01.T02 AT4G23850 55.958 663 264 7 5 654 7 654 0.0 750
MsG0180001276.01.T02 AT4G11030 53.858 661 281 5 5 654 7 654 0.0 729
MsG0180001276.01.T02 AT1G49430 62.549 510 172 6 9 514 11 505 0.0 672
MsG0180001276.01.T02 AT2G47240 46.224 662 330 6 5 654 4 651 0.0 604
MsG0180001276.01.T02 AT2G47240 46.224 662 330 6 5 654 4 651 0.0 604
MsG0180001276.01.T02 AT2G47240 46.224 662 330 6 5 654 4 651 0.0 604
MsG0180001276.01.T02 AT2G47240 46.612 605 298 5 62 654 1 592 0.0 557
MsG0180001276.01.T02 AT5G27600 40.545 624 329 13 48 654 88 686 2.13e-144 436
MsG0180001276.01.T02 AT3G05970 40.354 622 333 11 48 654 88 686 9.19e-142 430
MsG0180001276.01.T02 AT2G04350 30.621 676 381 19 40 654 70 718 2.24e-88 291
MsG0180001276.01.T02 AT2G04350 30.621 676 381 19 40 654 70 718 2.24e-88 291
MsG0180001276.01.T02 AT1G77590 29.773 618 367 16 74 654 102 689 2.99e-74 252
MsG0180001276.01.T02 AT1G77590 30.298 571 331 16 121 654 3 543 1.46e-67 231
MsG0180001276.01.T02 AT3G23790 24.372 677 401 24 48 654 85 720 2.62e-35 142
MsG0180001276.01.T02 AT4G14070 23.669 676 406 24 45 654 94 725 3.26e-34 139
MsG0180001276.01.T02 AT1G51680 23.228 508 294 17 74 557 60 495 1.17e-18 90.5
MsG0180001276.01.T02 AT1G51680 23.228 508 294 17 74 557 60 495 1.26e-18 90.1
MsG0180001276.01.T02 AT1G51680 23.353 501 288 17 74 550 60 488 1.51e-18 89.7
MsG0180001276.01.T02 AT2G47245 47.368 76 40 0 22 97 53 128 2.28e-17 79.3
MsG0180001276.01.T01 AT1G49430 63.994 661 208 8 9 654 11 656 0.0 885
MsG0180001276.01.T01 AT1G64400 53.101 661 287 4 5 654 6 654 0.0 754
MsG0180001276.01.T01 AT4G23850 55.958 663 264 7 5 654 7 654 0.0 750
MsG0180001276.01.T01 AT4G11030 53.858 661 281 5 5 654 7 654 0.0 729
MsG0180001276.01.T01 AT1G49430 62.549 510 172 6 9 514 11 505 0.0 672
MsG0180001276.01.T01 AT2G47240 46.224 662 330 6 5 654 4 651 0.0 604
MsG0180001276.01.T01 AT2G47240 46.224 662 330 6 5 654 4 651 0.0 604
MsG0180001276.01.T01 AT2G47240 46.224 662 330 6 5 654 4 651 0.0 604
MsG0180001276.01.T01 AT2G47240 46.612 605 298 5 62 654 1 592 0.0 557
MsG0180001276.01.T01 AT5G27600 40.545 624 329 13 48 654 88 686 2.13e-144 436
MsG0180001276.01.T01 AT3G05970 40.354 622 333 11 48 654 88 686 9.19e-142 430
MsG0180001276.01.T01 AT2G04350 30.621 676 381 19 40 654 70 718 2.24e-88 291
MsG0180001276.01.T01 AT2G04350 30.621 676 381 19 40 654 70 718 2.24e-88 291
MsG0180001276.01.T01 AT1G77590 29.773 618 367 16 74 654 102 689 2.99e-74 252
MsG0180001276.01.T01 AT1G77590 30.298 571 331 16 121 654 3 543 1.46e-67 231
MsG0180001276.01.T01 AT3G23790 24.372 677 401 24 48 654 85 720 2.62e-35 142
MsG0180001276.01.T01 AT4G14070 23.669 676 406 24 45 654 94 725 3.26e-34 139
MsG0180001276.01.T01 AT1G51680 23.228 508 294 17 74 557 60 495 1.17e-18 90.5
MsG0180001276.01.T01 AT1G51680 23.228 508 294 17 74 557 60 495 1.26e-18 90.1
MsG0180001276.01.T01 AT1G51680 23.353 501 288 17 74 550 60 488 1.51e-18 89.7
MsG0180001276.01.T01 AT2G47245 47.368 76 40 0 22 97 53 128 2.28e-17 79.3

Find 29 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCTTATGGAGTTGCCTTC+TGG 0.290118 1:-18670673 MsG0180001276.01.T01:CDS
ATAAATTCTAAGACTACTTT+TGG 0.291740 1:+18670923 None:intergenic
AGTCCCCTTGGGATTTCTTC+AGG 0.293756 1:-18670645 MsG0180001276.01.T01:intron
TCAGAACTGTACTGACTTGC+AGG 0.326216 1:+18670846 None:intergenic
TTATGCCAAAGATGGTCTTA+TGG 0.345504 1:-18670686 MsG0180001276.01.T01:CDS
CAACTCCATAAGACCATCTT+TGG 0.351332 1:+18670681 None:intergenic
TGACATTGTGAAACTGAAAC+TGG 0.353646 1:+18670792 None:intergenic
TTCTGGTTTAGAGTCCCCTT+GGG 0.408562 1:-18670656 MsG0180001276.01.T01:CDS
CTTCTGGTTTAGAGTCCCCT+TGG 0.410896 1:-18670657 MsG0180001276.01.T01:CDS
TACTGACTTGCAGGGAATGA+TGG 0.452940 1:+18670855 None:intergenic
GCATAAATGCATCTATAGAC+AGG 0.467561 1:+18670703 None:intergenic
GGAAGGCCTGCTACATCTGA+TGG 0.500055 1:-18670742 MsG0180001276.01.T01:CDS
AGATGCATTTATGCCAAAGA+TGG 0.539890 1:-18670694 MsG0180001276.01.T01:CDS
GGCCTTCCATCAGATGTAGC+AGG 0.548577 1:+18670736 None:intergenic
CTGTGAAAGTTGAGGAAGGA+AGG 0.550847 1:-18670759 MsG0180001276.01.T01:CDS
TATACTGTGAAAGTTGAGGA+AGG 0.570953 1:-18670763 MsG0180001276.01.T01:CDS
TTTCAGTTTCACAATGTCAG+AGG 0.582437 1:-18670788 MsG0180001276.01.T01:exon
GATGATTCAAGTAATAGTGA+AGG 0.583214 1:+18670880 None:intergenic
CTATAGACAGGGCCTACTGA+TGG 0.590521 1:+18670715 None:intergenic
GGTTTATACTGTGAAAGTTG+AGG 0.592335 1:-18670767 MsG0180001276.01.T01:CDS
ATGATTCAAGTAATAGTGAA+GGG 0.612747 1:+18670881 None:intergenic
GGCCTGCTACATCTGATGGA+AGG 0.614561 1:-18670738 MsG0180001276.01.T01:CDS
ATTGACCTGAAGAAATCCCA+AGG 0.616044 1:+18670640 None:intergenic
CAGAACTGTACTGACTTGCA+GGG 0.629002 1:+18670847 None:intergenic
CAAGGGGACTCTAAACCAGA+AGG 0.631617 1:+18670658 None:intergenic
TCTGATGGAAGGCCATCAGT+AGG 0.643213 1:-18670727 MsG0180001276.01.T01:CDS
TTGACCTGAAGAAATCCCAA+GGG 0.647515 1:+18670641 None:intergenic
CATAAATGCATCTATAGACA+GGG 0.653651 1:+18670704 None:intergenic
TGACCTGAAGAAATCCCAAG+GGG 0.758321 1:+18670642 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATCTTTAAATTATCTCA+AGG - Chr1:18669952-18669971 MsG0180001276.01.T01:intron 15.0%
!! ATAAGTTTATAGGTATTTAT+AGG - Chr1:18668294-18668313 MsG0180001276.01.T01:intron 15.0%
!! GAAATTTATTATCTGATTAA+TGG - Chr1:18666645-18666664 MsG0180001276.01.T01:CDS 15.0%
!!! ACAATTTTCTTTAAACTTTA+AGG - Chr1:18668214-18668233 MsG0180001276.01.T01:intron 15.0%
!!! TAAAATAATATTGGTTTTGT+TGG - Chr1:18669244-18669263 MsG0180001276.01.T01:intron 15.0%
!!! TACAACATTGTAATATTTTT+AGG - Chr1:18668520-18668539 MsG0180001276.01.T01:CDS 15.0%
!!! TACTTTTCTAATAAGTTTAT+AGG - Chr1:18668284-18668303 MsG0180001276.01.T01:intron 15.0%
!!! TTTTATCTTAGAAGTTTTTA+TGG - Chr1:18666230-18666249 MsG0180001276.01.T01:intron 15.0%
!! AAACTACAACAAAGAATAAA+TGG + Chr1:18666364-18666383 None:intergenic 20.0%
!! AATCGCAACTAAAATAATAT+TGG - Chr1:18669235-18669254 MsG0180001276.01.T01:intron 20.0%
!! ACATGTATAATAGTAGTATT+TGG - Chr1:18666197-18666216 MsG0180001276.01.T01:intron 20.0%
!! ATCTTTATGTGAAAATCTAA+AGG - Chr1:18670253-18670272 MsG0180001276.01.T01:intron 20.0%
!! ATGAATCTATCAAAAAGATA+AGG + Chr1:18666173-18666192 None:intergenic 20.0%
!! CAAAATAGTAAAATTGAATC+AGG + Chr1:18666818-18666837 None:intergenic 20.0%
!! CAAAATCATATATACATACT+TGG + Chr1:18670325-18670344 None:intergenic 20.0%
!! CTATATAGTTTCACAAATAT+AGG + Chr1:18668486-18668505 None:intergenic 20.0%
!! TAATAGAACATTATGCTTTA+TGG - Chr1:18668371-18668390 MsG0180001276.01.T01:intron 20.0%
!! TACTGAAAAATTGAATGAAT+TGG + Chr1:18668266-18668285 None:intergenic 20.0%
!! TATAGTAGAATTTCACAATT+TGG - Chr1:18670655-18670674 MsG0180001276.01.T01:CDS 20.0%
!!! ATAAATTCTAAGACTACTTT+TGG + Chr1:18665650-18665669 None:intergenic 20.0%
!!! ATTAATGGTTTTATGTTACT+AGG - Chr1:18666660-18666679 MsG0180001276.01.T01:intron 20.0%
!!! ATTCAATTTTACTATTTTGC+AGG - Chr1:18666819-18666838 MsG0180001276.01.T01:CDS 20.0%
!!! CATATACTATTTCTCATAAA+AGG + Chr1:18669482-18669501 None:intergenic 20.0%
!!! CCACAATATAAAAATTTTTG+AGG + Chr1:18667890-18667909 None:intergenic 20.0%
!!! CCTCAAAAATTTTTATATTG+TGG - Chr1:18667887-18667906 MsG0180001276.01.T01:intron 20.0%
!!! TAAAGTTTTCACAATTTAAC+AGG + Chr1:18666409-18666428 None:intergenic 20.0%
!!! TATCATTTATTTTTTGTGAC+AGG - Chr1:18669518-18669537 MsG0180001276.01.T01:intron 20.0%
!!! TGCATATCAATATTTTCAAA+AGG + Chr1:18668327-18668346 None:intergenic 20.0%
!!! TTAATGGTTTTATGTTACTA+GGG - Chr1:18666661-18666680 MsG0180001276.01.T01:intron 20.0%
!!! TTTATAGTATAAAGTGCTAT+AGG + Chr1:18670582-18670601 None:intergenic 20.0%
! AAACAAATGTTAGTTCAGTA+AGG + Chr1:18667522-18667541 None:intergenic 25.0%
! AAAGAAATCACATTCTTGTT+TGG + Chr1:18667233-18667252 None:intergenic 25.0%
! AACAAATGTTAGTTCAGTAA+GGG + Chr1:18667521-18667540 None:intergenic 25.0%
! AAGTTAAGATATCTAGAGAA+GGG - Chr1:18669116-18669135 MsG0180001276.01.T01:intron 25.0%
! AATATTCTCTTTATTCTTGC+AGG - Chr1:18668731-18668750 MsG0180001276.01.T01:intron 25.0%
! AATTCTACTATAATCCAAGT+TGG + Chr1:18670647-18670666 None:intergenic 25.0%
! ACAATTACTGAAATACTACA+AGG - Chr1:18670531-18670550 MsG0180001276.01.T01:intron 25.0%
! AGTTTGTCAACATTAAATAG+AGG + Chr1:18667651-18667670 None:intergenic 25.0%
! ATGATTCAAGTAATAGTGAA+GGG + Chr1:18665692-18665711 None:intergenic 25.0%
! ATGTGTATAACAGTAGTATT+TGG + Chr1:18667089-18667108 None:intergenic 25.0%
! ATTCTTAATAATGACACCTT+TGG + Chr1:18668126-18668145 None:intergenic 25.0%
! CAAACAAATAAACCTTAATC+TGG + Chr1:18667626-18667645 None:intergenic 25.0%
! CTACTGTTATACACATAATT+TGG - Chr1:18667093-18667112 MsG0180001276.01.T01:intron 25.0%
! GATCAAATTGATGAACTATA+GGG - Chr1:18670782-18670801 MsG0180001276.01.T01:exon 25.0%
! GTTCTTCAAATCTAAAAAGT+AGG - Chr1:18667570-18667589 MsG0180001276.01.T01:CDS 25.0%
! TATGAACTCTAATCAGATAT+TGG - Chr1:18670707-18670726 MsG0180001276.01.T01:CDS 25.0%
! TCTATAGCATAAACAACTTA+TGG - Chr1:18667127-18667146 MsG0180001276.01.T01:intron 25.0%
! TGAGACAACTTGAATAATAT+AGG + Chr1:18669829-18669848 None:intergenic 25.0%
! TGTCTATTGACCAAATTATT+AGG - Chr1:18668168-18668187 MsG0180001276.01.T01:intron 25.0%
! TTCCTATTGGTATTCAAATT+AGG - Chr1:18667952-18667971 MsG0180001276.01.T01:CDS 25.0%
! TTCTTAATAATGACACCTTT+GGG + Chr1:18668125-18668144 None:intergenic 25.0%
! TTCTTTGTGTATTCAGATTT+GGG - Chr1:18670127-18670146 MsG0180001276.01.T01:intron 25.0%
! TTGTAGTATTTCAGTAATTG+TGG + Chr1:18670532-18670551 None:intergenic 25.0%
! TTTCTTTGTGTATTCAGATT+TGG - Chr1:18670126-18670145 MsG0180001276.01.T01:intron 25.0%
!! AACATTGAGTTTGAATTTTC+AGG - Chr1:18666433-18666452 MsG0180001276.01.T01:intron 25.0%
!! ACTATATGCTTTTCAAATGT+AGG - Chr1:18668950-18668969 MsG0180001276.01.T01:intron 25.0%
!! TGTTTTCTTAATGTTCCATA+AGG - Chr1:18667023-18667042 MsG0180001276.01.T01:CDS 25.0%
!! TTAAGTTGTTTATCCAAACA+TGG + Chr1:18666925-18666944 None:intergenic 25.0%
!! TTTTCTGTCAATGATTTTCA+TGG + Chr1:18669929-18669948 None:intergenic 25.0%
!!! ATATCTTAACTTGCTGTTAA+TGG + Chr1:18669108-18669127 None:intergenic 25.0%
!!! TAACATTTTGAAATCATTGC+AGG - Chr1:18669875-18669894 MsG0180001276.01.T01:CDS 25.0%
!!! TATTATTCAAGTTGTCTCAT+TGG - Chr1:18669830-18669849 MsG0180001276.01.T01:intron 25.0%
AAAGAACTAGAACATACTGA+TGG + Chr1:18667423-18667442 None:intergenic 30.0%
AACACAAGTCTATCAAAGAA+AGG + Chr1:18669164-18669183 None:intergenic 30.0%
AAGACAAAAAAGACATACCA+AGG + Chr1:18666888-18666907 None:intergenic 30.0%
AATGAAATCTGCAGCAAAAA+AGG + Chr1:18665758-18665777 None:intergenic 30.0%
ACAGCAAATCTTTATATTGC+GGG - Chr1:18667822-18667841 MsG0180001276.01.T01:intron 30.0%
AGACAAAAAAGACATACCAA+GGG + Chr1:18666887-18666906 None:intergenic 30.0%
AGTCATAGTGTATTAGATTG+CGG - Chr1:18667789-18667808 MsG0180001276.01.T01:CDS 30.0%
AGTTTCAATTGCATTTGTAC+AGG - Chr1:18667386-18667405 MsG0180001276.01.T01:intron 30.0%
ATACCAAGGGAATCATATAA+TGG + Chr1:18666874-18666893 None:intergenic 30.0%
ATTATCACAAGGATATGGTA+TGG - Chr1:18669371-18669390 MsG0180001276.01.T01:intron 30.0%
CAAGTTAAGATATCTAGAGA+AGG - Chr1:18669115-18669134 MsG0180001276.01.T01:intron 30.0%
CACAGCAAATCTTTATATTG+CGG - Chr1:18667821-18667840 MsG0180001276.01.T01:intron 30.0%
CATAAATGCATCTATAGACA+GGG + Chr1:18665869-18665888 None:intergenic 30.0%
CTATCAAAACTTAGCAGAAT+AGG + Chr1:18670358-18670377 None:intergenic 30.0%
CTCCTAATTTGAATACCAAT+AGG + Chr1:18667957-18667976 None:intergenic 30.0%
GATGATTCAAGTAATAGTGA+AGG + Chr1:18665693-18665712 None:intergenic 30.0%
GGATCAAATTGATGAACTAT+AGG - Chr1:18670781-18670800 MsG0180001276.01.T01:exon 30.0%
GGTCTCTTCAATTTAAATGT+TGG + Chr1:18670511-18670530 None:intergenic 30.0%
GTACATTATTGTGCAAATGT+CGG + Chr1:18668081-18668100 None:intergenic 30.0%
TATGATGTTTCCATCCAAAT+GGG - Chr1:18666491-18666510 MsG0180001276.01.T01:intron 30.0%
TGATAGACTTGTGTTTGATA+AGG - Chr1:18669169-18669188 MsG0180001276.01.T01:CDS 30.0%
TGATTTATTCCTAGCAATTG+AGG - Chr1:18669792-18669811 MsG0180001276.01.T01:intron 30.0%
TGTATTCAGATTTGGGTATA+TGG - Chr1:18670134-18670153 MsG0180001276.01.T01:intron 30.0%
TGTCTGTCAACCTAATAATT+TGG + Chr1:18668181-18668200 None:intergenic 30.0%
TTATATGTGAGCCATGAATA+AGG + Chr1:18666464-18666483 None:intergenic 30.0%
TTATGATGTTTCCATCCAAA+TGG - Chr1:18666490-18666509 MsG0180001276.01.T01:intron 30.0%
! AAAGGCAAGACAATACATTT+TGG - Chr1:18670271-18670290 MsG0180001276.01.T01:CDS 30.0%
! AACTTTTGTTCATGCTTAAC+AGG - Chr1:18667327-18667346 MsG0180001276.01.T01:intron 30.0%
! AATGATTTTCATGGCTCATT+TGG + Chr1:18669920-18669939 None:intergenic 30.0%
! AGCAAAAAAGTACATGTAAC+TGG - Chr1:18666598-18666617 MsG0180001276.01.T01:CDS 30.0%
! CACAAAACTCTTAGTGTTTT+TGG - Chr1:18669051-18669070 MsG0180001276.01.T01:intron 30.0%
! CCTTTCTTTTCTGTTCTTTA+GGG - Chr1:18668020-18668039 MsG0180001276.01.T01:CDS 30.0%
! GAAGTTTTTATGGTTTCCTT+TGG - Chr1:18666240-18666259 MsG0180001276.01.T01:intron 30.0%
! GATTGACTTATTTGAGCTTA+TGG + Chr1:18667211-18667230 None:intergenic 30.0%
! GCTTTGTTAATGTTTCCTTA+TGG + Chr1:18667041-18667060 None:intergenic 30.0%
! TCCTTTCTTTTCTGTTCTTT+AGG - Chr1:18668019-18668038 MsG0180001276.01.T01:CDS 30.0%
! TGAACTCTTTTTGCAAAGTT+TGG - Chr1:18669209-18669228 MsG0180001276.01.T01:CDS 30.0%
!! ACTATAATCCAAGTTGGTTA+AGG + Chr1:18670641-18670660 None:intergenic 30.0%
!! ATAAAGATTTGCTGTGTAAC+CGG + Chr1:18667817-18667836 None:intergenic 30.0%
!!! AAACAGTTTTGAGTCATTCT+TGG - Chr1:18670157-18670176 MsG0180001276.01.T01:intron 30.0%
AAAAGCAAAGTTTCATCTGC+TGG - Chr1:18668977-18668996 MsG0180001276.01.T01:intron 35.0%
AAACAGAAATCCACTTACCT+TGG - Chr1:18670080-18670099 MsG0180001276.01.T01:CDS 35.0%
AAGCATACCGATGATATAAG+AGG + Chr1:18670024-18670043 None:intergenic 35.0%
AAGGAACTGTTGAAAACTCA+CGG + Chr1:18666546-18666565 None:intergenic 35.0%
ACTCAAGAGGTTATAGTTGA+TGG - Chr1:18669749-18669768 MsG0180001276.01.T01:intron 35.0%
AGAGAGAATGTTGAAAGAGA+AGG + Chr1:18666565-18666584 None:intergenic 35.0%
AGATAAGGACTCATAGAACA+TGG + Chr1:18666158-18666177 None:intergenic 35.0%
AGATCTCTCTCTATGTCAAA+GGG + Chr1:18670481-18670500 None:intergenic 35.0%
AGATGCATTTATGCCAAAGA+TGG - Chr1:18665876-18665895 MsG0180001276.01.T01:intron 35.0%
AGCATACCGATGATATAAGA+GGG + Chr1:18670023-18670042 None:intergenic 35.0%
ATACACTATGACTTACCAAC+TGG + Chr1:18667782-18667801 None:intergenic 35.0%
ATCAACTATTGAAGCAACCA+AGG + Chr1:18670100-18670119 None:intergenic 35.0%
ATGAACTATAGGGAAGCAAA+AGG - Chr1:18670792-18670811 MsG0180001276.01.T01:exon 35.0%
ATGATAAACTCCACAGCATT+AGG + Chr1:18667354-18667373 None:intergenic 35.0%
ATGCAATTGAAACTTCTGCA+TGG + Chr1:18667380-18667399 None:intergenic 35.0%
ATTCTTACAAGAGTTGCATC+TGG + Chr1:18670953-18670972 None:intergenic 35.0%
CAACTATAACCTCTTGAGTA+AGG + Chr1:18669748-18669767 None:intergenic 35.0%
CACAACATAGCTCAATCAAT+TGG - Chr1:18666083-18666102 MsG0180001276.01.T01:CDS 35.0%
CATACCATCTCAAGAAGTTT+CGG - Chr1:18667265-18667284 MsG0180001276.01.T01:CDS 35.0%
CCAATAGGAAGATGAAAACA+AGG + Chr1:18667942-18667961 None:intergenic 35.0%
CCCTAAAGAACAGAAAAGAA+AGG + Chr1:18668023-18668042 None:intergenic 35.0%
CTAATACGATCGAAAACTCT+AGG + Chr1:18668816-18668835 None:intergenic 35.0%
GCATAAATGCATCTATAGAC+AGG + Chr1:18665870-18665889 None:intergenic 35.0%
GGAACACCACAAAATATAGT+CGG + Chr1:18668795-18668814 None:intergenic 35.0%
GGTTTATACTGTGAAAGTTG+AGG - Chr1:18665803-18665822 MsG0180001276.01.T01:intron 35.0%
GTTCCATTATATGATTCCCT+TGG - Chr1:18666868-18666887 MsG0180001276.01.T01:CDS 35.0%
TAGATCTCTCTCTATGTCAA+AGG + Chr1:18670482-18670501 None:intergenic 35.0%
TATACTGTGAAAGTTGAGGA+AGG - Chr1:18665807-18665826 MsG0180001276.01.T01:intron 35.0%
TCAAGACATGACAAAATCTG+TGG + Chr1:18667545-18667564 None:intergenic 35.0%
TCATGTATACGACCAGATAA+TGG - Chr1:18668589-18668608 MsG0180001276.01.T01:intron 35.0%
TCCACATTATCACAAGGATA+TGG - Chr1:18669366-18669385 MsG0180001276.01.T01:intron 35.0%
TGACATTGTGAAACTGAAAC+TGG + Chr1:18665781-18665800 None:intergenic 35.0%
TGCACAATAATGTACACAAG+TGG - Chr1:18668086-18668105 MsG0180001276.01.T01:intron 35.0%
TGGTATTCAAATTAGGAGCA+TGG - Chr1:18667959-18667978 MsG0180001276.01.T01:CDS 35.0%
TTATATTGTGGCCACAATTG+CGG - Chr1:18667899-18667918 MsG0180001276.01.T01:intron 35.0%
TTCATGGCTCACATATAAAG+AGG - Chr1:18666466-18666485 MsG0180001276.01.T01:intron 35.0%
TTCTCTTTCAACATTCTCTC+TGG - Chr1:18666564-18666583 MsG0180001276.01.T01:CDS 35.0%
TTTACTCTCAGTCCAGATTA+AGG - Chr1:18667611-18667630 MsG0180001276.01.T01:intron 35.0%
TTTCAGTTTCACAATGTCAG+AGG - Chr1:18665782-18665801 MsG0180001276.01.T01:intron 35.0%
! AAGCATTGTATTCTGATGCA+TGG + Chr1:18670684-18670703 None:intergenic 35.0%
! ACAGTTGATTTAGCCATGTT+TGG - Chr1:18666909-18666928 MsG0180001276.01.T01:CDS 35.0%
! ACCATATCCTTGTGATAATG+TGG + Chr1:18669370-18669389 None:intergenic 35.0%
! CTGAAACCGACTATATTTTG+TGG - Chr1:18668786-18668805 MsG0180001276.01.T01:intron 35.0%
! GCAGTTGAGCACAATTTTAA+TGG - Chr1:18670221-18670240 MsG0180001276.01.T01:intron 35.0%
! TCTTGTTTCCTTAACCAACT+TGG - Chr1:18670630-18670649 MsG0180001276.01.T01:intron 35.0%
! TCTTTAGGGAAGTTTGGATT+GGG - Chr1:18668034-18668053 MsG0180001276.01.T01:intron 35.0%
! TTAGTCTTTGTGAGAGCTTA+TGG + Chr1:18667171-18667190 None:intergenic 35.0%
! TTATGCCAAAGATGGTCTTA+TGG - Chr1:18665884-18665903 MsG0180001276.01.T01:intron 35.0%
! TTCTGTTCTTTAGGGAAGTT+TGG - Chr1:18668028-18668047 MsG0180001276.01.T01:CDS 35.0%
! TTCTTTAGGGAAGTTTGGAT+TGG - Chr1:18668033-18668052 MsG0180001276.01.T01:intron 35.0%
! TTTTATGGTTTCCTTTGGCA+GGG - Chr1:18666245-18666264 MsG0180001276.01.T01:intron 35.0%
! TTTTTATGGTTTCCTTTGGC+AGG - Chr1:18666244-18666263 MsG0180001276.01.T01:intron 35.0%
!! AACTTGCTGTTAATGGATTC+TGG + Chr1:18669101-18669120 None:intergenic 35.0%
!! AAGAGGTTATAGTTGATGGT+TGG - Chr1:18669753-18669772 MsG0180001276.01.T01:intron 35.0%
!! TATTAGGTTGACAGACAAAG+TGG - Chr1:18668184-18668203 MsG0180001276.01.T01:intron 35.0%
!! TGTGTTTTCTATGATGGGAA+CGG - Chr1:18669583-18669602 MsG0180001276.01.T01:intron 35.0%
!! TTGAGTTTGAATTTTCAGGC+AGG - Chr1:18666437-18666456 MsG0180001276.01.T01:intron 35.0%
!!! CAAATGTCGGTCTTCTTTTT+TGG + Chr1:18668068-18668087 None:intergenic 35.0%
!!! CCTTGTTTTCATCTTCCTAT+TGG - Chr1:18667939-18667958 MsG0180001276.01.T01:CDS 35.0%
AAACACTCCTCCACATGAAT+AGG + Chr1:18669330-18669349 None:intergenic 40.0%
AATGATCCATTCAGGACAGT+TGG + Chr1:18666710-18666729 None:intergenic 40.0%
AGGAACTGTTGAAAACTCAC+GGG + Chr1:18666545-18666564 None:intergenic 40.0%
AGTGGATCCACATTATCACA+AGG - Chr1:18669360-18669379 MsG0180001276.01.T01:intron 40.0%
AGTGTATTAGATTGCGGTTC+CGG - Chr1:18667795-18667814 MsG0180001276.01.T01:CDS 40.0%
ATGAAACTCTCTCAGCTTAG+AGG - Chr1:18670418-18670437 MsG0180001276.01.T01:intron 40.0%
ATGTACACAAGTGGAACAAC+TGG - Chr1:18668095-18668114 MsG0180001276.01.T01:intron 40.0%
ATTGAAGCAACCAAGGTAAG+TGG + Chr1:18670093-18670112 None:intergenic 40.0%
ATTGACCTGAAGAAATCCCA+AGG + Chr1:18665933-18665952 None:intergenic 40.0%
CAACTCCATAAGACCATCTT+TGG + Chr1:18665892-18665911 None:intergenic 40.0%
CTTGAATCTGTACCAGAGAT+GGG - Chr1:18669638-18669657 MsG0180001276.01.T01:intron 40.0%
CTTGTGATAACCAGAGAACA+AGG + Chr1:18669717-18669736 None:intergenic 40.0%
CTTTATTCTTGCAGGATGTC+AGG - Chr1:18668739-18668758 MsG0180001276.01.T01:intron 40.0%
CTTTGCGAAAATTGCTTTGC+AGG - Chr1:18670760-18670779 MsG0180001276.01.T01:CDS 40.0%
GAAATCATTGCAGGCGATAT+TGG - Chr1:18669884-18669903 MsG0180001276.01.T01:CDS 40.0%
GCAATGCCCTCTTATATCAT+CGG - Chr1:18670014-18670033 MsG0180001276.01.T01:intron 40.0%
GCAGCTCAAAGCTATTTATC+TGG - Chr1:18670447-18670466 MsG0180001276.01.T01:intron 40.0%
GCGTCAAAAACTCGATTCTA+AGG - Chr1:18666308-18666327 MsG0180001276.01.T01:CDS 40.0%
GTTGTAGCTATTGTGAGCTT+TGG - Chr1:18667684-18667703 MsG0180001276.01.T01:intron 40.0%
TAACTGCAATTTCGACCACA+TGG + Chr1:18667857-18667876 None:intergenic 40.0%
TACATGAGCAAGAGGAAGAA+AGG + Chr1:18668576-18668595 None:intergenic 40.0%
TAGGGAAGCAAAAGGAACAA+AGG - Chr1:18670800-18670819 MsG0180001276.01.T01:five_prime_UTR 40.0%
TCCATTGCAATGATCCATTC+AGG + Chr1:18666718-18666737 None:intergenic 40.0%
TCCTGAATGGATCATTGCAA+TGG - Chr1:18666714-18666733 MsG0180001276.01.T01:intron 40.0%
TGAATGGATCATTGCAATGG+AGG - Chr1:18666717-18666736 MsG0180001276.01.T01:intron 40.0%
TTGACCTGAAGAAATCCCAA+GGG + Chr1:18665932-18665951 None:intergenic 40.0%
! GGCGATGTGTTTTCTATGAT+GGG - Chr1:18669578-18669597 MsG0180001276.01.T01:intron 40.0%
! GTTTTCGATCGTATTAGTGC+TGG - Chr1:18668819-18668838 MsG0180001276.01.T01:CDS 40.0%
! TGTTTCTGCCACACAAAAGA+AGG - Chr1:18667710-18667729 MsG0180001276.01.T01:intron 40.0%
! TTGGATGAGCTTAAAAGCAC+TGG - Chr1:18670290-18670309 MsG0180001276.01.T01:CDS 40.0%
!! GTTGATGGTTGGTTTCATAC+AGG - Chr1:18669764-18669783 MsG0180001276.01.T01:intron 40.0%
!! TGTCTCATTGGCTCTAAATG+CGG - Chr1:18669842-18669861 MsG0180001276.01.T01:intron 40.0%
!! TTTTCTATGATGGGAACGGT+TGG - Chr1:18669587-18669606 MsG0180001276.01.T01:intron 40.0%
!!! ATGTCGGTCTTCTTTTTTGG+TGG + Chr1:18668065-18668084 None:intergenic 40.0%
!!! CAGTTTTGAGTCATTCTTGG+TGG - Chr1:18670160-18670179 MsG0180001276.01.T01:intron 40.0%
AAGAAGGAAGCCGAGGAATT+TGG - Chr1:18667726-18667745 MsG0180001276.01.T01:intron 45.0%
AATTCCCATGACAACCATCG+AGG - Chr1:18669610-18669629 MsG0180001276.01.T01:intron 45.0%
ACAGAAAGGCTCTTGAGGAT+TGG - Chr1:18670198-18670217 MsG0180001276.01.T01:intron 45.0%
AGAACAAGGAGTTTCCTCTC+AGG + Chr1:18669703-18669722 None:intergenic 45.0%
AGAGGAAACTCCTTGTTCTC+TGG - Chr1:18669704-18669723 MsG0180001276.01.T01:CDS 45.0%
ATCCTCAAGAGCCTTTCTGT+CGG + Chr1:18670198-18670217 None:intergenic 45.0%
ATCTTCAAGGGATCCGCAAT+AGG - Chr1:18668623-18668642 MsG0180001276.01.T01:intron 45.0%
CAAATCGACGTTGCATCAGA+TGG + Chr1:18670847-18670866 None:intergenic 45.0%
CAGAAAGGCTCTTGAGGATT+GGG - Chr1:18670199-18670218 MsG0180001276.01.T01:intron 45.0%
CTCTCTATGTCAAAGGGAGT+TGG + Chr1:18670475-18670494 None:intergenic 45.0%
CTGTGAAAGTTGAGGAAGGA+AGG - Chr1:18665811-18665830 MsG0180001276.01.T01:intron 45.0%
CTTAACAGAATCCCTGCCAA+AGG + Chr1:18666259-18666278 None:intergenic 45.0%
CTTAACAGGTCCTAATGCTG+TGG - Chr1:18667341-18667360 MsG0180001276.01.T01:intron 45.0%
CTTCCAAGCATCTGGTTGTT+GGG + Chr1:18666288-18666307 None:intergenic 45.0%
GAGTGTTTGAGAGTCACTAG+TGG - Chr1:18669342-18669361 MsG0180001276.01.T01:intron 45.0%
GCCTTGCCAAAATCCTATTG+CGG + Chr1:18668639-18668658 None:intergenic 45.0%
GCGACCTATTGCATCTTCAA+GGG - Chr1:18668611-18668630 MsG0180001276.01.T01:intron 45.0%
GCTTGAATCTGTACCAGAGA+TGG - Chr1:18669637-18669656 MsG0180001276.01.T01:intron 45.0%
GGAGATCACTGTGGCATATA+TGG - Chr1:18666682-18666701 MsG0180001276.01.T01:intron 45.0%
GGATCCCTTGAAGATGCAAT+AGG + Chr1:18668618-18668637 None:intergenic 45.0%
GTCTTACTGAAAGCTGTGCT+GGG - Chr1:18669540-18669559 MsG0180001276.01.T01:intron 45.0%
GTGTCCGAAACTTCTTGAGA+TGG + Chr1:18667272-18667291 None:intergenic 45.0%
GTGTCTGAACATCTTCAAGC+AGG + Chr1:18668767-18668786 None:intergenic 45.0%
TAGACAAAACAAGCGCTAGG+TGG - Chr1:18669267-18669286 MsG0180001276.01.T01:intron 45.0%
TCACATGTGCCTCAATTGCT+AGG + Chr1:18669804-18669823 None:intergenic 45.0%
TCCTCCACATGAATAGGCAA+AGG + Chr1:18669324-18669343 None:intergenic 45.0%
TGACCTGAAGAAATCCCAAG+GGG + Chr1:18665931-18665950 None:intergenic 45.0%
TGCAATAGGTCGCCATTATC+TGG + Chr1:18668604-18668623 None:intergenic 45.0%
TGGTAGACAAAACAAGCGCT+AGG - Chr1:18669264-18669283 MsG0180001276.01.T01:intron 45.0%
TGGTCGTATACATGAGCAAG+AGG + Chr1:18668584-18668603 None:intergenic 45.0%
TGTTACTAGGGAGATCACTG+TGG - Chr1:18666673-18666692 MsG0180001276.01.T01:intron 45.0%
TTCAGGCAGGACCTTATTCA+TGG - Chr1:18666450-18666469 MsG0180001276.01.T01:intron 45.0%
TTCCAAGCATCTGGTTGTTG+GGG + Chr1:18666287-18666306 None:intergenic 45.0%
TTGCAGGCGATATTGGAGAA+TGG - Chr1:18669891-18669910 MsG0180001276.01.T01:CDS 45.0%
TTGGCAGGGATTCTGTTAAG+AGG - Chr1:18666259-18666278 MsG0180001276.01.T01:intron 45.0%
! AAGAGTTGCATCTGGAGTTG+TGG + Chr1:18670945-18670964 None:intergenic 45.0%
! AGGGATCCGCAATAGGATTT+TGG - Chr1:18668630-18668649 MsG0180001276.01.T01:intron 45.0%
! CGGCGATGTGTTTTCTATGA+TGG - Chr1:18669577-18669596 MsG0180001276.01.T01:intron 45.0%
!! AAAGGTGCTGCTTTGTGTTG+TGG + Chr1:18669146-18669165 None:intergenic 45.0%
!! CAGAACTGTACTGACTTGCA+GGG + Chr1:18665726-18665745 None:intergenic 45.0%
!! TACTGACTTGCAGGGAATGA+TGG + Chr1:18665718-18665737 None:intergenic 45.0%
!! TCAGAACTGTACTGACTTGC+AGG + Chr1:18665727-18665746 None:intergenic 45.0%
!! TCCGCAATAGGATTTTGGCA+AGG - Chr1:18668635-18668654 MsG0180001276.01.T01:intron 45.0%
!! TTCTGGTTTAGAGTCCCCTT+GGG - Chr1:18665914-18665933 MsG0180001276.01.T01:intron 45.0%
AATTTCTCCACGTGGCTCAC+TGG + Chr1:18669678-18669697 None:intergenic 50.0%
AGTCCCCTTGGGATTTCTTC+AGG - Chr1:18665925-18665944 MsG0180001276.01.T01:intron 50.0%
AGTGCGTCATATCCCATCTC+TGG + Chr1:18669653-18669672 None:intergenic 50.0%
CAAGGGGACTCTAAACCAGA+AGG + Chr1:18665915-18665934 None:intergenic 50.0%
CACACAAAAGAAGGAAGCCG+AGG - Chr1:18667719-18667738 MsG0180001276.01.T01:intron 50.0%
CCAACAACCAGATGCTTGGA+AGG - Chr1:18666286-18666305 MsG0180001276.01.T01:CDS 50.0%
CCTTCCAAGCATCTGGTTGT+TGG + Chr1:18666289-18666308 None:intergenic 50.0%
CGCGTTCGTATCCTGTTATC+TGG - Chr1:18669291-18669310 MsG0180001276.01.T01:intron 50.0%
CGTGGAGAAATTTGCCTGAG+AGG - Chr1:18669686-18669705 MsG0180001276.01.T01:intron 50.0%
CTATAGACAGGGCCTACTGA+TGG + Chr1:18665858-18665877 None:intergenic 50.0%
CTCAGGCAAATTTCTCCACG+TGG + Chr1:18669686-18669705 None:intergenic 50.0%
CTCTGGTACAGATTCAAGCC+TGG + Chr1:18669636-18669655 None:intergenic 50.0%
GCAGGATGTGCCAAATTCCT+CGG + Chr1:18667739-18667758 None:intergenic 50.0%
GCCTTTGCCTATTCATGTGG+AGG - Chr1:18669320-18669339 MsG0180001276.01.T01:intron 50.0%
GCGACAAGACCTTACTCAAG+AGG - Chr1:18669736-18669755 MsG0180001276.01.T01:intron 50.0%
GGAACAACTGGAGAACCCAA+AGG - Chr1:18668107-18668126 MsG0180001276.01.T01:intron 50.0%
GGCATGAGTATAGTGTCCTG+TGG - Chr1:18670821-18670840 MsG0180001276.01.T01:five_prime_UTR 50.0%
GGCGACCTATTGCATCTTCA+AGG - Chr1:18668610-18668629 MsG0180001276.01.T01:intron 50.0%
GGTCTTACTGAAAGCTGTGC+TGG - Chr1:18669539-18669558 MsG0180001276.01.T01:intron 50.0%
TCCTCAAGAGCCTTTCTGTC+GGG + Chr1:18670197-18670216 None:intergenic 50.0%
TCTGATGGAAGGCCATCAGT+AGG - Chr1:18665843-18665862 MsG0180001276.01.T01:intron 50.0%
TGCGCCTTTGCCTATTCATG+TGG - Chr1:18669317-18669336 MsG0180001276.01.T01:intron 50.0%
TGCGGGAATATACGACCATG+TGG - Chr1:18667839-18667858 MsG0180001276.01.T01:intron 50.0%
TTCTCATGGCTGAGCCCATT+TGG + Chr1:18666508-18666527 None:intergenic 50.0%
TTTGACGCCTTCCAAGCATC+TGG + Chr1:18666296-18666315 None:intergenic 50.0%
! ATGGTGCCAACTGTCCTGAA+TGG - Chr1:18666701-18666720 MsG0180001276.01.T01:intron 50.0%
! CTCGGCTTCCTTCTTTTGTG+TGG + Chr1:18667721-18667740 None:intergenic 50.0%
! GGTCTTATGGAGTTGCCTTC+TGG - Chr1:18665897-18665916 MsG0180001276.01.T01:intron 50.0%
! TGAGTCATTCTTGGTGGCTG+TGG - Chr1:18670166-18670185 MsG0180001276.01.T01:intron 50.0%
!! CTTCTGGTTTAGAGTCCCCT+TGG - Chr1:18665913-18665932 MsG0180001276.01.T01:intron 50.0%
AAACTCTCCCCAGGAGAAGC+AGG + Chr1:18667757-18667776 None:intergenic 55.0%
AACTCACGGGATTGACGCCA+CGG + Chr1:18666532-18666551 None:intergenic 55.0%
AAGGCGCAGCTCCAGATAAC+AGG + Chr1:18669305-18669324 None:intergenic 55.0%
ACGTTGCATCAGATGGCCAC+AGG + Chr1:18670840-18670859 None:intergenic 55.0%
AGATTCAAGCCTGGCCTCGA+TGG + Chr1:18669627-18669646 None:intergenic 55.0%
AGCCCCAACAACCAGATGCT+TGG - Chr1:18666282-18666301 MsG0180001276.01.T01:CDS 55.0%
ATTGACGCCACGGCTTCTCA+TGG + Chr1:18666522-18666541 None:intergenic 55.0%
CAACTGGAGAAACTCTCCCC+AGG + Chr1:18667766-18667785 None:intergenic 55.0%
CATGGCTGAGCCCATTTGGA+TGG + Chr1:18666504-18666523 None:intergenic 55.0%
CCTCAAGAGCCTTTCTGTCG+GGG + Chr1:18670196-18670215 None:intergenic 55.0%
CTGGCCTCGATGGTTGTCAT+GGG + Chr1:18669617-18669636 None:intergenic 55.0%
CTGGGGAGAGTTTCTCCAGT+TGG - Chr1:18667764-18667783 MsG0180001276.01.T01:CDS 55.0%
GGAAGGCCTGCTACATCTGA+TGG - Chr1:18665828-18665847 MsG0180001276.01.T01:intron 55.0%
GGCCTGCTACATCTGATGGA+AGG - Chr1:18665832-18665851 MsG0180001276.01.T01:intron 55.0%
GGCCTTCCATCAGATGTAGC+AGG + Chr1:18665837-18665856 None:intergenic 55.0%
TGGCACATCCTGCTTCTCCT+GGG - Chr1:18667746-18667765 MsG0180001276.01.T01:intron 55.0%
TGTGGTAGTCCCCGACAGAA+AGG - Chr1:18670184-18670203 MsG0180001276.01.T01:intron 55.0%
TTAGTCCGCAGCCGCAATTG+TGG + Chr1:18667913-18667932 None:intergenic 55.0%
TTGGCACATCCTGCTTCTCC+TGG - Chr1:18667745-18667764 MsG0180001276.01.T01:intron 55.0%
CCATGACAACCATCGAGGCC+AGG - Chr1:18669615-18669634 MsG0180001276.01.T01:intron 60.0%
CCCCGACAGAAAGGCTCTTG+AGG - Chr1:18670193-18670212 MsG0180001276.01.T01:intron 60.0%
CCTGGCCTCGATGGTTGTCA+TGG + Chr1:18669618-18669637 None:intergenic 60.0%
GCACTTTCCAGTGAGCCACG+TGG - Chr1:18669668-18669687 MsG0180001276.01.T01:intron 60.0%
GGCACATCCTGCTTCTCCTG+GGG - Chr1:18667747-18667766 MsG0180001276.01.T01:intron 60.0%
TGTGGCCACAATTGCGGCTG+CGG - Chr1:18667905-18667924 MsG0180001276.01.T01:intron 60.0%
GGCTCAGCCATGAGAAGCCG+TGG - Chr1:18666512-18666531 MsG0180001276.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 18665572 18671020 18665572 ID=MsG0180001276.01;Name=MsG0180001276.01
Chr1 mRNA 18665572 18671018 18665572 ID=MsG0180001276.01.T01;Parent=MsG0180001276.01;Name=MsG0180001276.01.T01;_AED=0.39;_eAED=0.39;_QI=187|0.84|0.85|1|0.73|0.7|20|218|654
Chr1 exon 18670646 18670866 18670646 ID=MsG0180001276.01.T01:exon:32499;Parent=MsG0180001276.01.T01
Chr1 exon 18670901 18671018 18670901 ID=MsG0180001276.01.T01:exon:32498;Parent=MsG0180001276.01.T01
Chr1 five_prime_UTR 18670901 18671018 18670901 ID=MsG0180001276.01.T01:five_prime_utr;Parent=MsG0180001276.01.T01
Chr1 five_prime_UTR 18670798 18670866 18670798 ID=MsG0180001276.01.T01:five_prime_utr;Parent=MsG0180001276.01.T01
Chr1 CDS 18670646 18670797 18670646 ID=MsG0180001276.01.T01:cds;Parent=MsG0180001276.01.T01
Chr1 CDS 18670263 18670326 18670263 ID=MsG0180001276.01.T01:cds;Parent=MsG0180001276.01.T01
Chr1 CDS 18670048 18670137 18670048 ID=MsG0180001276.01.T01:cds;Parent=MsG0180001276.01.T01
Chr1 CDS 18669854 18669910 18669854 ID=MsG0180001276.01.T01:cds;Parent=MsG0180001276.01.T01
Chr1 CDS 18669703 18669751 18669703 ID=MsG0180001276.01.T01:cds;Parent=MsG0180001276.01.T01
Chr1 CDS 18669117 18669243 18669117 ID=MsG0180001276.01.T01:cds;Parent=MsG0180001276.01.T01
Chr1 CDS 18669025 18669044 18669025 ID=MsG0180001276.01.T01:cds;Parent=MsG0180001276.01.T01
Chr1 CDS 18668807 18668901 18668807 ID=MsG0180001276.01.T01:cds;Parent=MsG0180001276.01.T01
Chr1 CDS 18668387 18668551 18668387 ID=MsG0180001276.01.T01:cds;Parent=MsG0180001276.01.T01
Chr1 CDS 18667934 18668050 18667934 ID=MsG0180001276.01.T01:cds;Parent=MsG0180001276.01.T01
Chr1 CDS 18667752 18667839 18667752 ID=MsG0180001276.01.T01:cds;Parent=MsG0180001276.01.T01
Chr1 CDS 18667554 18667620 18667554 ID=MsG0180001276.01.T01:cds;Parent=MsG0180001276.01.T01
Chr1 CDS 18667402 18667477 18667402 ID=MsG0180001276.01.T01:cds;Parent=MsG0180001276.01.T01
Chr1 CDS 18667205 18667322 18667205 ID=MsG0180001276.01.T01:cds;Parent=MsG0180001276.01.T01
Chr1 CDS 18666807 18667052 18666807 ID=MsG0180001276.01.T01:cds;Parent=MsG0180001276.01.T01
Chr1 CDS 18666557 18666666 18666557 ID=MsG0180001276.01.T01:cds;Parent=MsG0180001276.01.T01
Chr1 CDS 18666267 18666449 18666267 ID=MsG0180001276.01.T01:cds;Parent=MsG0180001276.01.T01
Chr1 CDS 18666040 18666159 18666040 ID=MsG0180001276.01.T01:cds;Parent=MsG0180001276.01.T01
Chr1 CDS 18665790 18665810 18665790 ID=MsG0180001276.01.T01:cds;Parent=MsG0180001276.01.T01
Chr1 three_prime_UTR 18665572 18665789 18665572 ID=MsG0180001276.01.T01:three_prime_utr;Parent=MsG0180001276.01.T01
Chr1 mRNA 18665572 18671020 18665572 ID=MsG0180001276.01.T02;Parent=MsG0180001276.01;Name=MsG0180001276.01.T02;_AED=0.39;_eAED=0.39;_QI=223|0.83|0.84|1|0.77|0.78|19|218|654
Chr1 exon 18670646 18671020 18670646 ID=MsG0180001276.01.T02:exon:32518;Parent=MsG0180001276.01.T02
Chr1 five_prime_UTR 18670798 18671020 18670798 ID=MsG0180001276.01.T02:five_prime_utr;Parent=MsG0180001276.01.T02
Chr1 CDS 18670646 18670797 18670646 ID=MsG0180001276.01.T02:cds;Parent=MsG0180001276.01.T02
Chr1 CDS 18670263 18670326 18670263 ID=MsG0180001276.01.T02:cds;Parent=MsG0180001276.01.T02
Chr1 CDS 18670048 18670137 18670048 ID=MsG0180001276.01.T02:cds;Parent=MsG0180001276.01.T02
Chr1 CDS 18669854 18669910 18669854 ID=MsG0180001276.01.T02:cds;Parent=MsG0180001276.01.T02
Chr1 CDS 18669703 18669751 18669703 ID=MsG0180001276.01.T02:cds;Parent=MsG0180001276.01.T02
Chr1 CDS 18669117 18669243 18669117 ID=MsG0180001276.01.T02:cds;Parent=MsG0180001276.01.T02
Chr1 CDS 18669025 18669044 18669025 ID=MsG0180001276.01.T02:cds;Parent=MsG0180001276.01.T02
Chr1 CDS 18668807 18668901 18668807 ID=MsG0180001276.01.T02:cds;Parent=MsG0180001276.01.T02
Chr1 CDS 18668387 18668551 18668387 ID=MsG0180001276.01.T02:cds;Parent=MsG0180001276.01.T02
Chr1 CDS 18667934 18668050 18667934 ID=MsG0180001276.01.T02:cds;Parent=MsG0180001276.01.T02
Chr1 CDS 18667752 18667839 18667752 ID=MsG0180001276.01.T02:cds;Parent=MsG0180001276.01.T02
Chr1 CDS 18667554 18667620 18667554 ID=MsG0180001276.01.T02:cds;Parent=MsG0180001276.01.T02
Chr1 CDS 18667402 18667477 18667402 ID=MsG0180001276.01.T02:cds;Parent=MsG0180001276.01.T02
Chr1 CDS 18667205 18667322 18667205 ID=MsG0180001276.01.T02:cds;Parent=MsG0180001276.01.T02
Chr1 CDS 18666807 18667052 18666807 ID=MsG0180001276.01.T02:cds;Parent=MsG0180001276.01.T02
Chr1 CDS 18666557 18666666 18666557 ID=MsG0180001276.01.T02:cds;Parent=MsG0180001276.01.T02
Chr1 CDS 18666267 18666449 18666267 ID=MsG0180001276.01.T02:cds;Parent=MsG0180001276.01.T02
Chr1 CDS 18666040 18666159 18666040 ID=MsG0180001276.01.T02:cds;Parent=MsG0180001276.01.T02
Chr1 CDS 18665790 18665810 18665790 ID=MsG0180001276.01.T02:cds;Parent=MsG0180001276.01.T02
Chr1 three_prime_UTR 18665572 18665789 18665572 ID=MsG0180001276.01.T02:three_prime_utr;Parent=MsG0180001276.01.T02
Gene Sequence

>MsG0180001276.01.T02

ATGTCAGAGGTTTATACTGTGAAAGTTGAGGAAGGAAGGCCTGCTACATCTGATGGAAGGCCATCAGTAGGCCCTGTCTATAGATGCATTTATGCCAAAGATGGTCTTATGGAGTTGCCTTCTGGTTTAGAGTCCCCTTGGGATTTCTTCAGGGATTCTGTTAAGAGGAGCCCCAACAACCAGATGCTTGGAAGGCGTCAAAAACTCGATTCTAAGGCAGGACCTTATTCATGGCTCACATATAAAGAGGTTTATGATGTTTCCATCCAAATGGGCTCAGCCATGAGAAGCCGTGGCGTCAATCCCGGAGATCACTGTGGCATATATGGTGCCAACTGTCCTGAATGGATCATTGCAATGGAGGCTTGCAATAGCTCTGCAGTAACATATGTTCCATTATATGATTCCCTTGGTCCTAATGCTGTGGAGTTTATCATAAACCATGCAGAAGTTTCAATTGCATTTGTACAGGAAAATAAGATTCCATCAGTATGTTCTAGTTCTTTGAGCTCAATGTTTTCACATTTAACGTTTCTACTATTTTGTCATGTCTTGATCACTATTGTGAGCTTTGGAAATGTTTCTGCCACACAAAAGAAGGAAGCCGAGGAATTTGGCACATCCTGCTTCTCCTGGGGAGAGTTTCTCCAGTTGGGAAGTTTGGATTGGGATCTACCACCAAAAAAGAAGACCGACATTTGCACAATAATGTACACAAGTGGAACAACTGGAGAACCCAAAGGTGTCATTATTAAGAATGAAGCTTTCATGTGTGAAGTGTTGTCTATTGACCAAATTATTAGGTTGACAGACAAAGTGGCAGCAGAAGCAGACGACGATGTCTACTTCTCCTTTCTTCCTCTTGCTCATGTATACGACCAGATAATGGCGACCTATTGCATCTTCAAGGGATCCGCAATAGGATTTTGGCAAGGCGATGTCAGGTTCCTGCTTGAAGATGTTCAGACACTGAAACCGACTATATTTTGTGGTGTTCCTAGAGTTTTCGATCGTATTAGTGCTGGTATCAAAAGCAAAGTTTCATCTGCTGGATCACTGCAAAGTGCTTTATTTCAGTATGCATACAACTACAAGTTAAGATATCTAGAGAAGGGTCTTCCACAACACAAAGCAGCACCTTTCTTTGATAGACTTGTGTTTGATAAGACAAAACAAGCGCTAGGTGGACGCGTTCGTATCCTGTTATCTGGAGCTGCGCCTTTGCCTATTCATGTGGAGGAGTGTTTGAGAGTCACTAGTGGATCCACATTATCACAAGGATATGGTCTTACTGAAAGCTGTGCTGGGTGTTTCACAGCAATCGGCGATGTGTTTTCTATGATGGGAACGGTTGGAATTCCCATGACAACCATCGAGGCCAGGCTTGAATCTGTACCAGAGATGGGATATGACGCACTTTCCAGTGAGCCACGTGGAGAAATTTGCCTGAGAGGAAACTCCTTGTTCTCTGGTTATCACAAGCGACAAGACCTTACTCAAGAGGTTATAGTTGATGGTTGGTTTCATACAGCCATGAAAATCATTGACAGAAAAAAGAATATCTTTAAATTATCTCAAGGAGAATACATTGCTGTAGAGAATATTGAAAGCAAGTATTTGCAATGCCCTCTTATATCATCGATTTGGGTATATGGAAACAGTTTTGAGTCATTCTTGGTGGCTGTGGTAGTCCCCGACAGAAAGGCTCTTGAGGATTGGGCAGTTGAGCACAATTTTAATGGTGACTACAAATCTTTATGTGAAAATCTAAAGGCAAGACAATACATTTTGGATGAGCTTAAAAGCACTGGTCAGAAACTCCAACTTAGAGGATTTGAGCAGCTCAAAGCTATTTATCTGGAACCAACTCCCTTTGACATAGAGAGAGATCTAGTAACTCCAACATTTAAATTGAAGAGACCACAATTACTGAAATACTACAAGGATCAAATTGATGAACTATAG

>MsG0180001276.01.T01

ATGTCAGAGGTTTATACTGTGAAAGTTGAGGAAGGAAGGCCTGCTACATCTGATGGAAGGCCATCAGTAGGCCCTGTCTATAGATGCATTTATGCCAAAGATGGTCTTATGGAGTTGCCTTCTGGTTTAGAGTCCCCTTGGGATTTCTTCAGGGATTCTGTTAAGAGGAGCCCCAACAACCAGATGCTTGGAAGGCGTCAAAAACTCGATTCTAAGGCAGGACCTTATTCATGGCTCACATATAAAGAGGTTTATGATGTTTCCATCCAAATGGGCTCAGCCATGAGAAGCCGTGGCGTCAATCCCGGAGATCACTGTGGCATATATGGTGCCAACTGTCCTGAATGGATCATTGCAATGGAGGCTTGCAATAGCTCTGCAGTAACATATGTTCCATTATATGATTCCCTTGGTCCTAATGCTGTGGAGTTTATCATAAACCATGCAGAAGTTTCAATTGCATTTGTACAGGAAAATAAGATTCCATCAGTATGTTCTAGTTCTTTGAGCTCAATGTTTTCACATTTAACGTTTCTACTATTTTGTCATGTCTTGATCACTATTGTGAGCTTTGGAAATGTTTCTGCCACACAAAAGAAGGAAGCCGAGGAATTTGGCACATCCTGCTTCTCCTGGGGAGAGTTTCTCCAGTTGGGAAGTTTGGATTGGGATCTACCACCAAAAAAGAAGACCGACATTTGCACAATAATGTACACAAGTGGAACAACTGGAGAACCCAAAGGTGTCATTATTAAGAATGAAGCTTTCATGTGTGAAGTGTTGTCTATTGACCAAATTATTAGGTTGACAGACAAAGTGGCAGCAGAAGCAGACGACGATGTCTACTTCTCCTTTCTTCCTCTTGCTCATGTATACGACCAGATAATGGCGACCTATTGCATCTTCAAGGGATCCGCAATAGGATTTTGGCAAGGCGATGTCAGGTTCCTGCTTGAAGATGTTCAGACACTGAAACCGACTATATTTTGTGGTGTTCCTAGAGTTTTCGATCGTATTAGTGCTGGTATCAAAAGCAAAGTTTCATCTGCTGGATCACTGCAAAGTGCTTTATTTCAGTATGCATACAACTACAAGTTAAGATATCTAGAGAAGGGTCTTCCACAACACAAAGCAGCACCTTTCTTTGATAGACTTGTGTTTGATAAGACAAAACAAGCGCTAGGTGGACGCGTTCGTATCCTGTTATCTGGAGCTGCGCCTTTGCCTATTCATGTGGAGGAGTGTTTGAGAGTCACTAGTGGATCCACATTATCACAAGGATATGGTCTTACTGAAAGCTGTGCTGGGTGTTTCACAGCAATCGGCGATGTGTTTTCTATGATGGGAACGGTTGGAATTCCCATGACAACCATCGAGGCCAGGCTTGAATCTGTACCAGAGATGGGATATGACGCACTTTCCAGTGAGCCACGTGGAGAAATTTGCCTGAGAGGAAACTCCTTGTTCTCTGGTTATCACAAGCGACAAGACCTTACTCAAGAGGTTATAGTTGATGGTTGGTTTCATACAGCCATGAAAATCATTGACAGAAAAAAGAATATCTTTAAATTATCTCAAGGAGAATACATTGCTGTAGAGAATATTGAAAGCAAGTATTTGCAATGCCCTCTTATATCATCGATTTGGGTATATGGAAACAGTTTTGAGTCATTCTTGGTGGCTGTGGTAGTCCCCGACAGAAAGGCTCTTGAGGATTGGGCAGTTGAGCACAATTTTAATGGTGACTACAAATCTTTATGTGAAAATCTAAAGGCAAGACAATACATTTTGGATGAGCTTAAAAGCACTGGTCAGAAACTCCAACTTAGAGGATTTGAGCAGCTCAAAGCTATTTATCTGGAACCAACTCCCTTTGACATAGAGAGAGATCTAGTAACTCCAACATTTAAATTGAAGAGACCACAATTACTGAAATACTACAAGGATCAAATTGATGAACTATAG
Protein sequence

>MsG0180001276.01.T02

MSEVYTVKVEEGRPATSDGRPSVGPVYRCIYAKDGLMELPSGLESPWDFFRDSVKRSPNNQMLGRRQKLDSKAGPYSWLTYKEVYDVSIQMGSAMRSRGVNPGDHCGIYGANCPEWIIAMEACNSSAVTYVPLYDSLGPNAVEFIINHAEVSIAFVQENKIPSVCSSSLSSMFSHLTFLLFCHVLITIVSFGNVSATQKKEAEEFGTSCFSWGEFLQLGSLDWDLPPKKKTDICTIMYTSGTTGEPKGVIIKNEAFMCEVLSIDQIIRLTDKVAAEADDDVYFSFLPLAHVYDQIMATYCIFKGSAIGFWQGDVRFLLEDVQTLKPTIFCGVPRVFDRISAGIKSKVSSAGSLQSALFQYAYNYKLRYLEKGLPQHKAAPFFDRLVFDKTKQALGGRVRILLSGAAPLPIHVEECLRVTSGSTLSQGYGLTESCAGCFTAIGDVFSMMGTVGIPMTTIEARLESVPEMGYDALSSEPRGEICLRGNSLFSGYHKRQDLTQEVIVDGWFHTAMKIIDRKKNIFKLSQGEYIAVENIESKYLQCPLISSIWVYGNSFESFLVAVVVPDRKALEDWAVEHNFNGDYKSLCENLKARQYILDELKSTGQKLQLRGFEQLKAIYLEPTPFDIERDLVTPTFKLKRPQLLKYYKDQIDEL*

>MsG0180001276.01.T01

MSEVYTVKVEEGRPATSDGRPSVGPVYRCIYAKDGLMELPSGLESPWDFFRDSVKRSPNNQMLGRRQKLDSKAGPYSWLTYKEVYDVSIQMGSAMRSRGVNPGDHCGIYGANCPEWIIAMEACNSSAVTYVPLYDSLGPNAVEFIINHAEVSIAFVQENKIPSVCSSSLSSMFSHLTFLLFCHVLITIVSFGNVSATQKKEAEEFGTSCFSWGEFLQLGSLDWDLPPKKKTDICTIMYTSGTTGEPKGVIIKNEAFMCEVLSIDQIIRLTDKVAAEADDDVYFSFLPLAHVYDQIMATYCIFKGSAIGFWQGDVRFLLEDVQTLKPTIFCGVPRVFDRISAGIKSKVSSAGSLQSALFQYAYNYKLRYLEKGLPQHKAAPFFDRLVFDKTKQALGGRVRILLSGAAPLPIHVEECLRVTSGSTLSQGYGLTESCAGCFTAIGDVFSMMGTVGIPMTTIEARLESVPEMGYDALSSEPRGEICLRGNSLFSGYHKRQDLTQEVIVDGWFHTAMKIIDRKKNIFKLSQGEYIAVENIESKYLQCPLISSIWVYGNSFESFLVAVVVPDRKALEDWAVEHNFNGDYKSLCENLKARQYILDELKSTGQKLQLRGFEQLKAIYLEPTPFDIERDLVTPTFKLKRPQLLKYYKDQIDEL*