AlfalfaGEDB | MsG0480018767.01

M. sativa cultivar ZhongmuNo.1 / MsG0480018767.01

KEGG: K07375
GO: GO:0003924 GO:0005200 GO:0005525 GO:0005874 GO:0007017
PFAM: PF00091 PF03953

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018767.01.T01	XP_013454867.1	99.555	449	2	0	1	449	1	449	0	942

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018767.01.T01	P29500	99.333	450	2	1	1	449	1	450	0	936

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018767.01.T01	A0A072USS0	99.555	449	2	0	1	449	1	449	0.0	942

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048258.01	MsG0480018767.01	0.830216	3.327466e-55	3.483475e-52
MsG0080048289.01	MsG0480018767.01	0.806444	8.201353e-50	4.452191e-47
MsG0080048797.01	MsG0480018767.01	0.814914	1.208518e-51	8.213448e-49
MsG0080048905.01	MsG0480018767.01	0.802797	4.731213e-49	2.338945e-46
MsG0180000028.01	MsG0480018767.01	0.800375	1.484450e-48	6.901183e-46
MsG0180001290.01	MsG0480018767.01	0.850281	1.879050e-60	3.661716e-57
MsG0180001293.01	MsG0480018767.01	0.824313	8.635651e-54	7.621177e-51
MsG0180001588.01	MsG0480018767.01	0.850347	1.801008e-60	3.517146e-57
MsG0180001719.01	MsG0480018767.01	0.832988	6.902728e-56	7.843553e-53
MsG0180003484.01	MsG0480018767.01	0.823776	1.154435e-53	1.003674e-50

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0480018767.01.T01	MTR_4g017630	99.555	449	2	0	1	449	1	449	942
MsG0480018767.01.T01	MTR_4g019110	96.047	430	17	0	1	430	1	430	850
MsG0480018767.01.T01	MTR_4g019090	95.814	430	18	0	1	430	1	430	848
MsG0480018767.01.T01	MTR_1g101130	95.814	430	18	0	1	430	1	430	848
MsG0480018767.01.T01	MTR_4g094535	95.116	430	21	0	1	430	1	430	842
MsG0480018767.01.T01	MTR_2g031310	94.884	430	22	0	1	430	1	430	841
MsG0480018767.01.T01	MTR_7g089120	94.419	430	24	0	1	430	1	430	837
MsG0480018767.01.T01	MTR_3g113970	93.056	432	28	1	1	430	1	432	825
MsG0480018767.01.T01	MTR_8g098360	90.698	430	40	0	1	430	1	430	816
MsG0480018767.01.T01	MTR_8g107250	90.271	442	40	2	1	439	1	442	814

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0480018767.01.T01	AT5G62700	96.744	430	14	0	1	430	1	430	854
MsG0480018767.01.T01	AT5G62690	96.744	430	14	0	1	430	1	430	854
MsG0480018767.01.T01	AT5G23860	96.047	430	17	0	1	430	1	430	848
MsG0480018767.01.T01	AT5G23860	96.047	430	17	0	1	430	1	430	848
MsG0480018767.01.T01	AT2G29550	95.360	431	20	0	1	431	1	431	843
MsG0480018767.01.T01	AT1G75780	94.432	431	23	1	1	430	1	431	838
MsG0480018767.01.T01	AT5G12250	93.953	430	26	0	1	430	1	430	836
MsG0480018767.01.T01	AT4G20890	94.186	430	25	0	1	430	1	430	834
MsG0480018767.01.T01	AT5G44340	93.953	430	26	0	1	430	1	430	831
MsG0480018767.01.T01	AT1G20010	93.271	431	28	1	1	430	1	431	828

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Find 140 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGCTTCAACATTCAT+TGG	0.324788	4:+9558656	MsG0480018767.01.T01:CDS
AAAGTAAGCATCATCCTGTC+TGG	0.418443	4:-9557951	None:intergenic
AACAAGCTGGTGAACAGAGA+GGG	0.596692	4:-9558030	None:intergenic
AACAATTCACTGCTATGTTC+AGG	0.434258	4:+9558720	MsG0480018767.01.T01:CDS
AACAGAGAGGGTAGCATTGT+AGG	0.442752	4:-9558018	None:intergenic
AACTTTGTGTTTGGTCAGAG+TGG	0.539264	4:+9556730	MsG0480018767.01.T01:CDS
AAGTAAGCATCATCCTGTCT+GGG	0.586190	4:-9557950	None:intergenic
AAGTTGAAGATCTGAATCAC+CGG	0.607154	4:-9556575	None:intergenic
AATAGGAGGAGTTCTTGTTC+TGG	0.394999	4:-9558571	None:intergenic
AATCCATTCCACAAAATAGG+AGG	0.611691	4:-9558585	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGGCTTCAACATTCAT+TGG	+	Chr4:9558656-9558675	MsG0480018767.01.T01:CDS	30.0%
ATTCAGATCTTCAACTTGAA+CGG	+	Chr4:9556581-9556600	MsG0480018767.01.T01:CDS	30.0%
AAATAGCAAAGCTTACAGCT+TGG	-	Chr4:9558134-9558153	None:intergenic	35.0%
AACAATTCACTGCTATGTTC+AGG	+	Chr4:9558720-9558739	MsG0480018767.01.T01:CDS	35.0%
AAGTTGAAGATCTGAATCAC+CGG	-	Chr4:9556578-9556597	None:intergenic	35.0%
AATCCATTCCACAAAATAGG+AGG	-	Chr4:9558588-9558607	None:intergenic	35.0%
AATGGGTATGTGGTCATTTA+GGG	+	Chr4:9557093-9557112	MsG0480018767.01.T01:intron	35.0%
ACAGTAGACTTGACATTGTT+TGG	-	Chr4:9558611-9558630	None:intergenic	35.0%
AGAAGAACATGTCACAAGAT+GGG	-	Chr4:9559190-9559209	None:intergenic	35.0%
GGCTGATTATGAAATTGGTT+TGG	+	Chr4:9557823-9557842	MsG0480018767.01.T01:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	9556357	9559243	9556357	ID=MsG0480018767.01;Name=MsG0480018767.01
Chr4	mRNA	9556357	9559243	9556357	ID=MsG0480018767.01.T01;Parent=MsG0480018767.01;Name=MsG0480018767.01.T01;_AED=0.49;_eAED=0.49;_QI=109\|1\|1\|1\|1\|1\|3\|321\|449
Chr4	exon	9556357	9556859	9556357	ID=MsG0480018767.01.T01:exon:2692;Parent=MsG0480018767.01.T01
Chr4	exon	9557868	9558137	9557868	ID=MsG0480018767.01.T01:exon:2693;Parent=MsG0480018767.01.T01
Chr4	exon	9558237	9559243	9558237	ID=MsG0480018767.01.T01:exon:2694;Parent=MsG0480018767.01.T01
Chr4	five_prime_UTR	9556357	9556465	9556357	ID=MsG0480018767.01.T01:five_prime_utr;Parent=MsG0480018767.01.T01
Chr4	CDS	9556466	9556859	9556466	ID=MsG0480018767.01.T01:cds;Parent=MsG0480018767.01.T01
Chr4	CDS	9557868	9558137	9557868	ID=MsG0480018767.01.T01:cds;Parent=MsG0480018767.01.T01
Chr4	CDS	9558237	9558922	9558237	ID=MsG0480018767.01.T01:cds;Parent=MsG0480018767.01.T01
Chr4	three_prime_UTR	9558923	9559243	9558923	ID=MsG0480018767.01.T01:three_prime_utr;Parent=MsG0480018767.01.T01

Gene Sequence

>MsG0480018767.01.T01

ATGCGTCAAATTCTTCACATCCAAGGTGGCCAATGCGGTAACCAAATCGGAGCTAAATTCTGGGAAGTGGTTTGCGCCGAACATGGAATCGATCCAACCGGACGCTACACCGGTGATTCAGATCTTCAACTTGAACGGATCGATGTGTATTACAATGAAGCAAGTGGTGGAAGATTTGTTCCGAGAGCGGTTCTTATGGATCTTGAACCGGGTACTATGGATAGTATCCGGTCTGGACCGTATGGTCAGATCTTTAGACCGGATAACTTTGTGTTTGGTCAGAGTGGTGCTGGGAATAACTGGGCTAAAGGGCATTATACTGAAGGCGCTGAGCTTATTGATTCTGTTCTTGATGTTGTGAGAAAAGAAGCTGAGAATTGTGATTGCTTGCAGGGATTTCAAGTATGCCACTCACTTGGTGGAGGAACTGGGTCTGGAATGGGAACTCTTTTGATTTCAAAGATCAGGGAAGAATACCCAGACAGGATGATGCTTACTTTCTCTGTTTTCCCTTCTCCTAAGGTTTCTGACACCGTGGTTGAACCCTACAATGCTACCCTCTCTGTTCACCAGCTTGTTGAAAATGCAGATGAGGTCATGGTTCTTGACAATGAAGCCTTGTATGACATTTGCTTCCGCATTTTGAAGCTCAGCAATCCAAGCTTTGGTGATCTGAATCATCTGATATCAGCAACCATGTCTGGTGTCACCTGTTGTTTGAGGTTCCCTGGTCAGCTTAACTCTGATCTTAGGAAGCTTGCTGTGAATCTCATTCCATTCCCGCGTCTTCACTTTTTCATGGTTGGATTTGCTCCGTTGACTTCCCGTGGCTCCCAGCAGTACAGGACTCTAAGTGTCCCTGAGCTCACTCAACAAATGTGGGATGCCAAGAACATGATGTGTGCTGCTGACCCTAGGCATGGGCGATACCTCACTGCTTCAGCCATGTTTAGAGGCAAGATGAGCACCAAGGAGGTTGATGAACAAATGATGAATGTCCAGAACAAGAACTCCTCCTATTTTGTGGAATGGATTCCAAACAATGTCAAGTCTACTGTCTGTGATATCCCCCCAACAGGGTTGAAAATGGCTTCAACATTCATTGGAAACTCCACATCCATTCAGGAAATGTTCCGTAGGGTGAGTGAACAATTCACTGCTATGTTCAGGAGAAAGGCTTTCTTGCATTGGTACACTGGTGAAGGCATGGACGAGATGGAATTCACTGAGGCTGAGAGCAACATGAATGATCTGGTTGCTGAGTATCAACAGTACCAAGATGCCACCGCTGATGAGGATGAGTATGGAGAGGAAGAGGGTGAAGAGGAGTATGAGCAACATGACATGTGA

Protein sequence

>MsG0480018767.01.T01

MRQILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERIDVYYNEASGGRFVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVMVLDNEALYDICFRILKLSNPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRTLSVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADEDEYGEEEGEEEYEQHDM*