AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048905.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048905.01.T01 MTR_1g090310 99.345 458 3 0 1 458 1 458 0.0 941
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048905.01.T01 AT5G07590 82.096 458 82 0 1 458 1 458 0.0 798
MsG0080048905.01.T01 AT5G07590 82.096 458 82 0 1 458 1 458 0.0 798
MsG0080048905.01.T01 AT5G07590 82.096 458 82 0 1 458 1 458 0.0 798
MsG0080048905.01.T01 AT5G07590 81.186 388 73 0 71 458 1 388 0.0 674

Find 52 sgRNAs with CRISPR-Local

Find 397 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACTAGATTCTGGCAATA+AGG 0.264051 contig528end:-15030 MsG0080048905.01.T01:intergenic
TTGTGATGACATTAATTCTA+AGG 0.319324 contig528end:+15422 MsG0080048905.01.T01:exon
CCCTATCAGAGTGGCAGCTT+GGG 0.363366 contig528end:+14824 MsG0080048905.01.T01:exon
TTACATTCTTATTTCTGATA+AGG 0.378563 contig528end:-15393 MsG0080048905.01.T01:intergenic
GAGCTATATTCACTAGATTC+TGG 0.387589 contig528end:-15038 MsG0080048905.01.T01:intergenic
TGGCAGTTGTCTGCTTCTTA+AGG 0.388500 contig528end:+14977 MsG0080048905.01.T01:exon
AAGTGAGTAAAACAAAATTA+TGG 0.397073 contig528end:+15078 MsG0080048905.01.T01:exon
AGAGTGTCTCTCCTGTTTGT+TGG 0.409836 contig528end:+15202 MsG0080048905.01.T01:exon
TTGTCTGCTTCTTAAGGATA+AGG 0.414943 contig528end:+14983 MsG0080048905.01.T01:exon
TGCCATCAGAATTCCACTTC+AGG 0.415273 contig528end:-14959 MsG0080048905.01.T01:intergenic
TCACTAGATTCTGGCAATAA+GGG 0.418573 contig528end:-15029 MsG0080048905.01.T01:intergenic
TCCCAAGCTGCCACTCTGAT+AGG 0.424058 contig528end:-14825 MsG0080048905.01.T01:intergenic
TGCATTTGGGAAAATTCAAA+AGG 0.433598 contig528end:+15311 MsG0080048905.01.T01:exon
GAGTGTCTCTCCTGTTTGTT+GGG 0.453736 contig528end:+15203 MsG0080048905.01.T01:exon
GTCTCTCCTGTTTGTTGGGT+AGG 0.457436 contig528end:+15207 MsG0080048905.01.T01:exon
CATGTATAAATGTGTGCTTC+CGG 0.459983 contig528end:-14877 MsG0080048905.01.T01:intergenic
TTATACATGTGGACCCCATC+TGG 0.460008 contig528end:+14891 MsG0080048905.01.T01:exon
ACCCTATCAGAGTGGCAGCT+TGG 0.472760 contig528end:+14823 MsG0080048905.01.T01:exon
TTTCGATAACAGACCTGAAG+TGG 0.477463 contig528end:+14946 MsG0080048905.01.T01:exon
CTATCTTTATCTTTGTGCAC+CGG 0.480844 contig528end:+15114 MsG0080048905.01.T01:exon
CATTGCGAGTACATATGTAT+TGG 0.480916 contig528end:-14728 MsG0080048905.01.T01:intergenic
TGCAAAACGAAAGGTTTCAC+TGG 0.486922 contig528end:-15292 MsG0080048905.01.T01:intergenic
GCATATCCTACCCAACAAAC+AGG 0.490821 contig528end:-15213 MsG0080048905.01.T01:intergenic
TGCCTACAGTACTCTGGGTA+TGG 0.492486 contig528end:+14757 MsG0080048905.01.T01:exon
ATAGTATGCCTACAGTACTC+TGG 0.496387 contig528end:+14751 MsG0080048905.01.T01:exon
GTTATCGAAAATTGTGGTAG+AGG 0.501423 contig528end:-14933 MsG0080048905.01.T01:intergenic
GAATTTGAATTTACAACTGA+AGG 0.526054 contig528end:-15175 MsG0080048905.01.T01:intergenic
TAGAGGAACATGAACACAAA+AGG 0.535149 contig528end:-14916 MsG0080048905.01.T01:intergenic
CCCAAGCTGCCACTCTGATA+GGG 0.538485 contig528end:-14824 MsG0080048905.01.T01:intergenic
TTTCCCAAATGCAAAACGAA+AGG 0.546608 contig528end:-15301 MsG0080048905.01.T01:intergenic
CGGGTAGGTAAGTGTAGCTA+AGG 0.549370 contig528end:+15134 MsG0080048905.01.T01:exon
TACAGCAATCTTAGTGCAGA+AGG 0.553737 contig528end:+14800 MsG0080048905.01.T01:exon
TGCTTCCGGTGCAGAAAACA+AGG 0.559234 contig528end:-14863 MsG0080048905.01.T01:intergenic
TGAACACAAAAGGCACCAGA+TGG 0.567725 contig528end:-14906 MsG0080048905.01.T01:intergenic
TAGTATGCCTACAGTACTCT+GGG 0.568899 contig528end:+14752 MsG0080048905.01.T01:exon
TTTATCTTTGTGCACCGGGT+AGG 0.573724 contig528end:+15119 MsG0080048905.01.T01:exon
AGGTCTGTTATCGAAAATTG+TGG 0.577251 contig528end:-14939 MsG0080048905.01.T01:intergenic
GAACACAAAAGGCACCAGAT+GGG 0.589683 contig528end:-14905 MsG0080048905.01.T01:intergenic
AAAATTATGGTAAATATGAA+CGG 0.591977 contig528end:+15091 MsG0080048905.01.T01:exon
TATCTTTATCTTTGTGCACC+GGG 0.593107 contig528end:+15115 MsG0080048905.01.T01:exon
CTTAGCTACACTTACCTACC+CGG 0.593162 contig528end:-15133 MsG0080048905.01.T01:intergenic
AAAACAAGGCGAGTGGATGT+CGG 0.593540 contig528end:-14849 MsG0080048905.01.T01:intergenic
TAATGCATGAAAAGAGAATG+TGG 0.597472 contig528end:-15370 MsG0080048905.01.T01:intergenic
AAACAGGAGAGACACTCTCA+TGG 0.600151 contig528end:-15197 MsG0080048905.01.T01:intergenic
GACCTGAAGTGGAATTCTGA+TGG 0.603890 contig528end:+14957 MsG0080048905.01.T01:exon
TTCCATACCCAGAGTACTGT+AGG 0.607984 contig528end:-14759 MsG0080048905.01.T01:intergenic
TAATACATGCTCTTACAACA+AGG 0.608608 contig528end:-15344 MsG0080048905.01.T01:intergenic
AACACAAAAGGCACCAGATG+GGG 0.616647 contig528end:-14904 MsG0080048905.01.T01:intergenic
AATACATGCTCTTACAACAA+GGG 0.646132 contig528end:-15343 MsG0080048905.01.T01:intergenic
GAAGCACACATTTATACATG+TGG 0.647516 contig528end:+14880 MsG0080048905.01.T01:exon
GGTGCAGAAAACAAGGCGAG+TGG 0.648222 contig528end:-14856 MsG0080048905.01.T01:intergenic
GCAGAAGGACCCTATCAGAG+TGG 0.712844 contig528end:+14815 MsG0080048905.01.T01:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTATGGTAAATATGAA+CGG + contig528end:15091-15110 MsG0080048905.01.T01:exon 15.0%
!! ACAAATACAATAATATATGT+TGG - contig528end:11126-11145 MsG0080048905.01.T01:intergenic 15.0%
!! ATATTTGAATTGCTTAAAAT+AGG - contig528end:12162-12181 MsG0080048905.01.T01:intergenic 15.0%
!! TGTATAATAATGTTGTAAAT+AGG + contig528end:10541-10560 MsG0080048905.01.T01:intron 15.0%
!! TTGAAACTATGTTTAAAAAT+TGG + contig528end:12831-12850 MsG0080048905.01.T01:intron 15.0%
!!! ATAATTGTTGTGTTTATTTT+AGG - contig528end:12245-12264 MsG0080048905.01.T01:intergenic 15.0%
!!! ATTTTAAGCAATTCAAATAT+TGG + contig528end:12162-12181 MsG0080048905.01.T01:intron 15.0%
!!! TTTATTTGATTTAAGCTTTT+TGG + contig528end:13902-13921 MsG0080048905.01.T01:intron 15.0%
!!! TTTCTAATTTTACATTTTTC+TGG + contig528end:14392-14411 MsG0080048905.01.T01:intron 15.0%
!! AAAGAATACAAGAATGTATT+TGG + contig528end:11188-11207 MsG0080048905.01.T01:intron 20.0%
!! AAGTGAGTAAAACAAAATTA+TGG + contig528end:15078-15097 MsG0080048905.01.T01:exon 20.0%
!! ACAAAATTAGCTATATTGAA+TGG + contig528end:11367-11386 MsG0080048905.01.T01:CDS 20.0%
!! AGTTAAATCTTATATTCCAT+AGG + contig528end:12100-12119 MsG0080048905.01.T01:intron 20.0%
!! CAAAATTAGCTATATTGAAT+GGG + contig528end:11368-11387 MsG0080048905.01.T01:CDS 20.0%
!! TTAATCATGATTAGTGAAAA+CGG + contig528end:10004-10023 MsG0080048905.01.T01:exon 20.0%
!! TTAGTTAAAAGAAACTGATA+TGG - contig528end:14568-14587 MsG0080048905.01.T01:intergenic 20.0%
!! TTTGTTTGGATTATTAGAAA+GGG - contig528end:12221-12240 MsG0080048905.01.T01:intergenic 20.0%
!!! TGTTTATTTTAGGTTTTGTT+TGG - contig528end:12235-12254 MsG0080048905.01.T01:intergenic 20.0%
!!! TTACATTCTTATTTCTGATA+AGG - contig528end:15396-15415 MsG0080048905.01.T01:intergenic 20.0%
!!! TTTTAAACATAGTTTCAAAG+TGG - contig528end:12829-12848 MsG0080048905.01.T01:intergenic 20.0%
!!! TTTTGTTTGGATTATTAGAA+AGG - contig528end:12222-12241 MsG0080048905.01.T01:intergenic 20.0%
!!! TTTTTTTTCCATTCCATTAA+CGG - contig528end:11989-12008 MsG0080048905.01.T01:intergenic 20.0%
! AAAAATAGCATACAGTTGTT+TGG + contig528end:12004-12023 MsG0080048905.01.T01:intron 25.0%
! AAAAATTGAATCCCATTAGT+GGG - contig528end:10379-10398 MsG0080048905.01.T01:intergenic 25.0%
! AAAAGTTTCACATGTATTGT+TGG + contig528end:13849-13868 MsG0080048905.01.T01:intron 25.0%
! AAAGGATATATCGGTATTAA+GGG - contig528end:14318-14337 MsG0080048905.01.T01:intergenic 25.0%
! AAGCTTTACATGATTGTTAA+GGG - contig528end:13089-13108 MsG0080048905.01.T01:intergenic 25.0%
! AATTGGAGATGAAAAATAGT+TGG + contig528end:12848-12867 MsG0080048905.01.T01:intron 25.0%
! AGAAACTGAATTATTTCATG+TGG + contig528end:14201-14220 MsG0080048905.01.T01:intron 25.0%
! AGGAAAGAAAAATAGGAATT+AGG - contig528end:11848-11867 MsG0080048905.01.T01:intergenic 25.0%
! ATAGGAATGTCATAATAAGT+TGG + contig528end:12901-12920 MsG0080048905.01.T01:intron 25.0%
! ATATCAATGTACAATAGACA+TGG + contig528end:12702-12721 MsG0080048905.01.T01:intron 25.0%
! ATTATACAACTAACTTCATG+TGG - contig528end:10529-10548 MsG0080048905.01.T01:intergenic 25.0%
! CCTATTAAAAATGAACTCAT+AGG - contig528end:15238-15257 MsG0080048905.01.T01:intergenic 25.0%
! CTAAAATCATTGGAAATAGA+TGG + contig528end:10615-10634 MsG0080048905.01.T01:intron 25.0%
! CTAAACATGAAAGGATATAT+CGG - contig528end:14327-14346 MsG0080048905.01.T01:intergenic 25.0%
! GAATCACATAACAATATCAT+TGG - contig528end:14364-14383 MsG0080048905.01.T01:intergenic 25.0%
! GAATTTGAATTTACAACTGA+AGG - contig528end:15178-15197 MsG0080048905.01.T01:intergenic 25.0%
! GAATTTGATAAAATTCTGTG+TGG + contig528end:10242-10261 MsG0080048905.01.T01:intron 25.0%
! GACAAGATAACAGATTTATA+TGG - contig528end:11698-11717 MsG0080048905.01.T01:intergenic 25.0%
! GGCTTAAAAAAAAGGATATT+TGG - contig528end:12580-12599 MsG0080048905.01.T01:intergenic 25.0%
! GTAGTAAGTGTTTGTTTAAT+AGG - contig528end:12280-12299 MsG0080048905.01.T01:intergenic 25.0%
! GTATAAAACAAAAACGACTA+AGG - contig528end:13382-13401 MsG0080048905.01.T01:intergenic 25.0%
! TAACAATATCATTGGAGATA+AGG - contig528end:14356-14375 MsG0080048905.01.T01:intergenic 25.0%
! TAAGCTTTACATGATTGTTA+AGG - contig528end:13090-13109 MsG0080048905.01.T01:intergenic 25.0%
! TATAGAGAATGTTTCATGAA+TGG + contig528end:13228-13247 MsG0080048905.01.T01:intron 25.0%
! TCACACAATTGAAAACAATT+AGG + contig528end:12393-12412 MsG0080048905.01.T01:intron 25.0%
! TCTTAATTCCATTATTTGCA+TGG + contig528end:14169-14188 MsG0080048905.01.T01:intron 25.0%
! TGCAACAAAGAAAGAATATA+TGG - contig528end:14441-14460 MsG0080048905.01.T01:intergenic 25.0%
! TTATATCCCAAAAATTTACC+CGG - contig528end:10952-10971 MsG0080048905.01.T01:intergenic 25.0%
! TTGCTTAAAATAGGATAGAA+TGG - contig528end:12153-12172 MsG0080048905.01.T01:intergenic 25.0%
! TTGTGATGACATTAATTCTA+AGG + contig528end:15422-15441 MsG0080048905.01.T01:exon 25.0%
!! AAATTTTCCATCTCTTGTAA+AGG - contig528end:11643-11662 MsG0080048905.01.T01:intergenic 25.0%
!! ACGATAGTTCTATAGTAATA+TGG + contig528end:11787-11806 MsG0080048905.01.T01:CDS 25.0%
!! ATTCTTTATTGATGATACCT+TGG + contig528end:14506-14525 MsG0080048905.01.T01:intron 25.0%
!! CGATAGTTCTATAGTAATAT+GGG + contig528end:11788-11807 MsG0080048905.01.T01:CDS 25.0%
!! TTAACTAGTCTGTGAATTTA+AGG + contig528end:11928-11947 MsG0080048905.01.T01:intron 25.0%
!! TTCTTTTATGTGAACTTATC+AGG - contig528end:11174-11193 MsG0080048905.01.T01:intergenic 25.0%
!! TTTGACACTTTTATTGTTGA+TGG + contig528end:13637-13656 MsG0080048905.01.T01:intron 25.0%
!!! CAAGAAAAATCAGTTTTGTT+AGG - contig528end:14680-14699 MsG0080048905.01.T01:intergenic 25.0%
!!! CATAGACTTTGATTTTGATT+TGG - contig528end:12436-12455 MsG0080048905.01.T01:intergenic 25.0%
!!! CCTATGAGTTCATTTTTAAT+AGG + contig528end:15235-15254 MsG0080048905.01.T01:exon 25.0%
!!! GTCGTTTTTGTTTTATACTT+AGG + contig528end:13384-13403 MsG0080048905.01.T01:intron 25.0%
!!! TTCATGTGGATATTTTTTTC+TGG + contig528end:14215-14234 MsG0080048905.01.T01:intron 25.0%
!!! TTCTGAAATGGTAAATTGAT+TGG - contig528end:14031-14050 MsG0080048905.01.T01:intergenic 25.0%
!!! TTTCTGGTCAATTTGATTTT+TGG + contig528end:14231-14250 MsG0080048905.01.T01:intron 25.0%
AAAATACCGAGCTTGAAATA+TGG + contig528end:10824-10843 MsG0080048905.01.T01:intron 30.0%
AAAATTGAATCCCATTAGTG+GGG - contig528end:10378-10397 MsG0080048905.01.T01:intergenic 30.0%
AACAACAATGTATACACACT+AGG - contig528end:12331-12350 MsG0080048905.01.T01:intergenic 30.0%
AACTTCTTATTGTAGCATGT+TGG - contig528end:10711-10730 MsG0080048905.01.T01:intergenic 30.0%
AAGGGTCTAGAAAACTAATA+AGG - contig528end:13071-13090 MsG0080048905.01.T01:intergenic 30.0%
AAGTATCAAGCATATGAAAG+TGG + contig528end:13442-13461 MsG0080048905.01.T01:CDS 30.0%
AATACATGCTCTTACAACAA+GGG - contig528end:15346-15365 MsG0080048905.01.T01:intergenic 30.0%
AATCGAAAAATGAGCTGAAA+AGG - contig528end:11048-11067 MsG0080048905.01.T01:intergenic 30.0%
AATGGAGACACTAAAATCAT+TGG + contig528end:10605-10624 MsG0080048905.01.T01:intron 30.0%
AATTCAAACCGTTAATGGAA+TGG + contig528end:11978-11997 MsG0080048905.01.T01:intron 30.0%
ACAAACCAGAAGCAAATATT+TGG - contig528end:11291-11310 MsG0080048905.01.T01:intergenic 30.0%
ACAGTTGTTTGGACAATTTA+TGG + contig528end:12015-12034 MsG0080048905.01.T01:intron 30.0%
ACCATCAGTCTAAAAAAAAC+AGG - contig528end:13322-13341 MsG0080048905.01.T01:intergenic 30.0%
ACTGAATGTTACAAACAAAC+GGG + contig528end:10115-10134 MsG0080048905.01.T01:CDS 30.0%
AGATTCCAAATATTTGCTTC+TGG + contig528end:11283-11302 MsG0080048905.01.T01:intron 30.0%
AGTGCCTGTTGAAATTTAAA+TGG + contig528end:10992-11011 MsG0080048905.01.T01:intron 30.0%
ATCCAAAGGACATAATAACT+TGG - contig528end:14467-14486 MsG0080048905.01.T01:intergenic 30.0%
ATCTCAATTCAAACCGTTAA+TGG + contig528end:11973-11992 MsG0080048905.01.T01:intron 30.0%
ATCTGTTATCTTGTCATTCA+TGG + contig528end:11703-11722 MsG0080048905.01.T01:CDS 30.0%
ATTACTATAGAACTATCGTC+AGG - contig528end:11786-11805 MsG0080048905.01.T01:intergenic 30.0%
CAAAAATTGAATCCCATTAG+TGG - contig528end:10380-10399 MsG0080048905.01.T01:intergenic 30.0%
CACAATTGAAAACAATTAGG+CGG + contig528end:12396-12415 MsG0080048905.01.T01:intron 30.0%
CACTGAATGTTACAAACAAA+CGG + contig528end:10114-10133 MsG0080048905.01.T01:CDS 30.0%
CCAAGTATATAATTCACCTA+TGG - contig528end:11239-11258 MsG0080048905.01.T01:intergenic 30.0%
CCATAGGTGAATTATATACT+TGG + contig528end:11236-11255 MsG0080048905.01.T01:intron 30.0%
CCATTATTTGCATGGTAAAT+AGG + contig528end:14177-14196 MsG0080048905.01.T01:intron 30.0%
CCTATTTACCATGCAAATAA+TGG - contig528end:14180-14199 MsG0080048905.01.T01:intergenic 30.0%
CTATAAAAAGCCAATGATAC+AGG + contig528end:11422-11441 MsG0080048905.01.T01:CDS 30.0%
GAAAGGATATATCGGTATTA+AGG - contig528end:14319-14338 MsG0080048905.01.T01:intergenic 30.0%
GAACTAAAGAATCAATCCAA+AGG - contig528end:14481-14500 MsG0080048905.01.T01:intergenic 30.0%
GATATTGTTATGTGATTCAC+TGG + contig528end:14366-14385 MsG0080048905.01.T01:intron 30.0%
GGGAATATATTCTATACCTA+TGG - contig528end:12119-12138 MsG0080048905.01.T01:intergenic 30.0%
GGTTTGAATTGAGATAGAAT+GGG - contig528end:11968-11987 MsG0080048905.01.T01:intergenic 30.0%
GTATATCACCCATAATGTTT+GGG + contig528end:13036-13055 MsG0080048905.01.T01:intron 30.0%
TAATACATGCTCTTACAACA+AGG - contig528end:15347-15366 MsG0080048905.01.T01:intergenic 30.0%
TAATGCATGAAAAGAGAATG+TGG - contig528end:15373-15392 MsG0080048905.01.T01:intergenic 30.0%
TATCAAATAGCTGACATTGT+AGG - contig528end:12685-12704 MsG0080048905.01.T01:intergenic 30.0%
TCAAATTCAAACACCTCTAA+AGG + contig528end:12457-12476 MsG0080048905.01.T01:intron 30.0%
TCTGTTATCTTGTCATTCAT+GGG + contig528end:11704-11723 MsG0080048905.01.T01:CDS 30.0%
TCTTCCAAGTTAAATGATTC+AGG - contig528end:13546-13565 MsG0080048905.01.T01:intergenic 30.0%
TGCATTTGGGAAAATTCAAA+AGG + contig528end:15311-15330 MsG0080048905.01.T01:exon 30.0%
TGTCATTCATGGGAAATAAT+GGG + contig528end:11714-11733 MsG0080048905.01.T01:CDS 30.0%
TTCCAAGTTATTATGTCCTT+TGG + contig528end:14462-14481 MsG0080048905.01.T01:intron 30.0%
TTGTCATTCATGGGAAATAA+TGG + contig528end:11713-11732 MsG0080048905.01.T01:CDS 30.0%
TTTGATAAAATTCTGTGTGG+TGG + contig528end:10245-10264 MsG0080048905.01.T01:intron 30.0%
! AAACATGAAGCTGATGTTTT+AGG + contig528end:10465-10484 MsG0080048905.01.T01:intron 30.0%
! AAACCTTTCGTTTTGCATTT+GGG + contig528end:15298-15317 MsG0080048905.01.T01:exon 30.0%
! AATAATGGAATTAAGAACCC+TGG - contig528end:14165-14184 MsG0080048905.01.T01:intergenic 30.0%
! AATATTTGGAATCTCTCAGA+TGG - contig528end:11277-11296 MsG0080048905.01.T01:intergenic 30.0%
! ATTGGAAATAGATGGATTTG+CGG + contig528end:10623-10642 MsG0080048905.01.T01:intron 30.0%
! ATTTAAGCTTTTTGGACAGT+TGG + contig528end:13910-13929 MsG0080048905.01.T01:intron 30.0%
! GATTTTTCTCAAGGAAACAA+TGG + contig528end:13758-13777 MsG0080048905.01.T01:CDS 30.0%
! GTTGCCATTTAAATTTCAAC+AGG - contig528end:10999-11018 MsG0080048905.01.T01:intergenic 30.0%
! TATTTGGAACTTTAGTGTCT+AGG + contig528end:11204-11223 MsG0080048905.01.T01:intron 30.0%
! TGAATACCGGGTAAATTTTT+GGG + contig528end:10943-10962 MsG0080048905.01.T01:intron 30.0%
! TTGAAGCATTCAAAAGTTAG+AGG - contig528end:14105-14124 MsG0080048905.01.T01:intergenic 30.0%
! TTGTTATTGTTCTTGCATCT+AGG - contig528end:12500-12519 MsG0080048905.01.T01:intergenic 30.0%
! TTGTTTTCAATTGTGTGACA+TGG - contig528end:12391-12410 MsG0080048905.01.T01:intergenic 30.0%
! TTTTTCCATTTCCATCCAAA+AGG - contig528end:10338-10357 MsG0080048905.01.T01:intergenic 30.0%
!! AAATATTTGCTTCTGGTTTG+TGG + contig528end:11290-11309 MsG0080048905.01.T01:intron 30.0%
!! ACAAAACTGATTTTTCTTGC+AGG + contig528end:14681-14700 MsG0080048905.01.T01:intron 30.0%
!!! AAAAATCAGTTTTGTTAGGC+GGG - contig528end:14676-14695 MsG0080048905.01.T01:intergenic 30.0%
!!! AGACTTTGATTTTGATTTGG+TGG - contig528end:12433-12452 MsG0080048905.01.T01:intergenic 30.0%
!!! GAAAAATCAGTTTTGTTAGG+CGG - contig528end:14677-14696 MsG0080048905.01.T01:intergenic 30.0%
!!! TCCTGTTTTTTTTAGACTGA+TGG + contig528end:13318-13337 MsG0080048905.01.T01:intron 30.0%
AAACGAAACCCTTGAATTTG+CGG + contig528end:10076-10095 MsG0080048905.01.T01:exon 35.0%
AAACGAAGGAATGTGTTTCA+TGG - contig528end:13937-13956 MsG0080048905.01.T01:intergenic 35.0%
AAAGTGTATTGCAGAAACCA+AGG - contig528end:14526-14545 MsG0080048905.01.T01:intergenic 35.0%
AAGAGCAAAATAGAGAGATG+GGG + contig528end:12871-12890 MsG0080048905.01.T01:intron 35.0%
AAGCGAGTCTTCCAAAATTT+GGG + contig528end:10576-10595 MsG0080048905.01.T01:intron 35.0%
ACCTCATACCTTACTCTAAA+GGG - contig528end:13998-14017 MsG0080048905.01.T01:intergenic 35.0%
AGAATATATTCCCTTACCTC+AGG + contig528end:12126-12145 MsG0080048905.01.T01:intron 35.0%
AGGTCTGTTATCGAAAATTG+TGG - contig528end:14942-14961 MsG0080048905.01.T01:intergenic 35.0%
AGGTTTACGCTAAACATGAA+AGG - contig528end:14336-14355 MsG0080048905.01.T01:intergenic 35.0%
ATAATGCAATGATCACTCCA+GGG + contig528end:14145-14164 MsG0080048905.01.T01:intron 35.0%
ATAGAGTCTTACAAGGGAAA+TGG - contig528end:12604-12623 MsG0080048905.01.T01:intergenic 35.0%
ATCTGTTGACCCAAACATTA+TGG - contig528end:13048-13067 MsG0080048905.01.T01:intergenic 35.0%
ATTATCACACCGCAAATTCA+AGG - contig528end:10088-10107 MsG0080048905.01.T01:intergenic 35.0%
ATTGCATTATGTAGCAAGGA+AGG - contig528end:14135-14154 MsG0080048905.01.T01:intergenic 35.0%
ATTTCCCTTGTAAGACTCTA+TGG + contig528end:12603-12622 MsG0080048905.01.T01:intron 35.0%
CATGTATAAATGTGTGCTTC+CGG - contig528end:14880-14899 MsG0080048905.01.T01:intergenic 35.0%
CATGTTGGATTTCAGATTTG+AGG - contig528end:10696-10715 MsG0080048905.01.T01:intergenic 35.0%
CATTGCGAGTACATATGTAT+TGG - contig528end:14731-14750 MsG0080048905.01.T01:intergenic 35.0%
CCAAATGATTCAGTTTGTCT+AGG - contig528end:14597-14616 MsG0080048905.01.T01:intergenic 35.0%
CCAATCAAACTCGAAATTAC+TGG + contig528end:12985-13004 MsG0080048905.01.T01:intron 35.0%
CCTAGACAAACTGAATCATT+TGG + contig528end:14594-14613 MsG0080048905.01.T01:intron 35.0%
CGGTTTGAATTGAGATAGAA+TGG - contig528end:11969-11988 MsG0080048905.01.T01:intergenic 35.0%
CTATCTTTATCTTTGTGCAC+CGG + contig528end:15114-15133 MsG0080048905.01.T01:exon 35.0%
GAAATGGGGGCTTAAAAAAA+AGG - contig528end:12588-12607 MsG0080048905.01.T01:intergenic 35.0%
GAAGAGCAAAATAGAGAGAT+GGG + contig528end:12870-12889 MsG0080048905.01.T01:intron 35.0%
GAAGCACACATTTATACATG+TGG + contig528end:14880-14899 MsG0080048905.01.T01:exon 35.0%
GAGCTATATTCACTAGATTC+TGG - contig528end:15041-15060 MsG0080048905.01.T01:intergenic 35.0%
GAGTCCTGAATCATTTAACT+TGG + contig528end:13539-13558 MsG0080048905.01.T01:CDS 35.0%
GATCATTGCATTATGTAGCA+AGG - contig528end:14139-14158 MsG0080048905.01.T01:intergenic 35.0%
GATCCCTTAAATAAAGTCTC+GGG + contig528end:10306-10325 MsG0080048905.01.T01:intron 35.0%
GGATCCCTTAAATAAAGTCT+CGG + contig528end:10305-10324 MsG0080048905.01.T01:intron 35.0%
GGTATATCACCCATAATGTT+TGG + contig528end:13035-13054 MsG0080048905.01.T01:intron 35.0%
GTGATATACCAGTAAGTAAC+TGG - contig528end:13025-13044 MsG0080048905.01.T01:intergenic 35.0%
GTTATCGAAAATTGTGGTAG+AGG - contig528end:14936-14955 MsG0080048905.01.T01:intergenic 35.0%
GTTCTAATCTATTCTCCAGA+CGG + contig528end:13406-13425 MsG0080048905.01.T01:CDS 35.0%
GTTTCTGCAATACACTTTGA+TGG + contig528end:14528-14547 MsG0080048905.01.T01:intron 35.0%
TAAGCGAGTCTTCCAAAATT+TGG + contig528end:10575-10594 MsG0080048905.01.T01:intron 35.0%
TAAGTATGTGACGACTATCT+GGG - contig528end:11524-11543 MsG0080048905.01.T01:intergenic 35.0%
TAGAGGAACATGAACACAAA+AGG - contig528end:14919-14938 MsG0080048905.01.T01:intergenic 35.0%
TAGAGTCTTACAAGGGAAAT+GGG - contig528end:12603-12622 MsG0080048905.01.T01:intergenic 35.0%
TATCTTTATCTTTGTGCACC+GGG + contig528end:15115-15134 MsG0080048905.01.T01:exon 35.0%
TCACTAGATTCTGGCAATAA+GGG - contig528end:15032-15051 MsG0080048905.01.T01:intergenic 35.0%
TCAGTTCTTGTAAGATGTGA+TGG + contig528end:10492-10511 MsG0080048905.01.T01:intron 35.0%
TCATACCATTGTTTGAGAAG+TGG + contig528end:12056-12075 MsG0080048905.01.T01:intron 35.0%
TCTGTTGACCCAAACATTAT+GGG - contig528end:13047-13066 MsG0080048905.01.T01:intergenic 35.0%
TGAAAACAGCAGCATAACAA+GGG - contig528end:13606-13625 MsG0080048905.01.T01:intergenic 35.0%
TGGATGGAAATGGAAAAATG+TGG + contig528end:10340-10359 MsG0080048905.01.T01:intron 35.0%
TGTACACCATACGTAATTGA+TGG - contig528end:12546-12565 MsG0080048905.01.T01:intergenic 35.0%
TGTTTGAGAAGTGGTTGAAA+TGG + contig528end:12065-12084 MsG0080048905.01.T01:intron 35.0%
TTATCACACCGCAAATTCAA+GGG - contig528end:10087-10106 MsG0080048905.01.T01:intergenic 35.0%
TTCAACCACTTCTCAAACAA+TGG - contig528end:12064-12083 MsG0080048905.01.T01:intergenic 35.0%
TTCACTAGATTCTGGCAATA+AGG - contig528end:15033-15052 MsG0080048905.01.T01:intergenic 35.0%
TTCAGTTGCGTTTAACAGTT+TGG + contig528end:11556-11575 MsG0080048905.01.T01:CDS 35.0%
TTGAAAACAGCAGCATAACA+AGG - contig528end:13607-13626 MsG0080048905.01.T01:intergenic 35.0%
TTGAATTTGCGGTGTGATAA+TGG + contig528end:10087-10106 MsG0080048905.01.T01:exon 35.0%
TTGCATTATGTAGCAAGGAA+GGG - contig528end:14134-14153 MsG0080048905.01.T01:intergenic 35.0%
TTGTCTGCTTCTTAAGGATA+AGG + contig528end:14983-15002 MsG0080048905.01.T01:exon 35.0%
TTGTTTCCTTCCTACAAGAT+TGG + contig528end:12346-12365 MsG0080048905.01.T01:intron 35.0%
TTTCCCAAATGCAAAACGAA+AGG - contig528end:15304-15323 MsG0080048905.01.T01:intergenic 35.0%
! ACACCTCTAAAGGAAATGTT+AGG + contig528end:12467-12486 MsG0080048905.01.T01:intron 35.0%
! ATTGTTCTTGCATCTAGGAT+TGG - contig528end:12495-12514 MsG0080048905.01.T01:intergenic 35.0%
! CAAGCATATGAAAGTGGATT+AGG + contig528end:13448-13467 MsG0080048905.01.T01:CDS 35.0%
! CACAGACTAGTTAAATTCAG+TGG - contig528end:11922-11941 MsG0080048905.01.T01:intergenic 35.0%
! CACCTCTAAAGGAAATGTTA+GGG + contig528end:12468-12487 MsG0080048905.01.T01:intron 35.0%
! CCAAAATTTGGGTTTAGGAA+TGG + contig528end:10587-10606 MsG0080048905.01.T01:intron 35.0%
! CCATTCCTAAACCCAAATTT+TGG - contig528end:10590-10609 MsG0080048905.01.T01:intergenic 35.0%
! CTGAATACCGGGTAAATTTT+TGG + contig528end:10942-10961 MsG0080048905.01.T01:intron 35.0%
! GAAACCTTTCGTTTTGCATT+TGG + contig528end:15297-15316 MsG0080048905.01.T01:exon 35.0%
! GTACCCGAGACTTTATTTAA+GGG - contig528end:10312-10331 MsG0080048905.01.T01:intergenic 35.0%
! GTCTTCCAAAATTTGGGTTT+AGG + contig528end:10582-10601 MsG0080048905.01.T01:intron 35.0%
! TGTGCAATTGTTTTCATGCT+TGG + contig528end:11344-11363 MsG0080048905.01.T01:CDS 35.0%
! TGTGTTTGTTGGATCAAGAT+TGG - contig528end:10855-10874 MsG0080048905.01.T01:intergenic 35.0%
! TTGAGCGATGATTTTTCTCA+AGG + contig528end:13749-13768 MsG0080048905.01.T01:CDS 35.0%
!! CCAGTAATTTCGAGTTTGAT+TGG - contig528end:12988-13007 MsG0080048905.01.T01:intergenic 35.0%
!!! TTCTTGCAGGTTTTTTGTCA+TGG + contig528end:14694-14713 MsG0080048905.01.T01:intron 35.0%
AAAAGCCAATGATACAGGCT+TGG + contig528end:11427-11446 MsG0080048905.01.T01:CDS 40.0%
AACAATTGCACAACCTGCAT+AGG - contig528end:11336-11355 MsG0080048905.01.T01:intergenic 40.0%
AATAGGATAGAATGGACCTG+AGG - contig528end:12145-12164 MsG0080048905.01.T01:intergenic 40.0%
AATTTGCAGCGATTTGCACA+AGG + contig528end:11658-11677 MsG0080048905.01.T01:CDS 40.0%
ACGTTGAACCAGTTACTTAC+TGG + contig528end:13014-13033 MsG0080048905.01.T01:intron 40.0%
AGAGGATACAATCAACTCAG+TGG + contig528end:12769-12788 MsG0080048905.01.T01:intron 40.0%
AGAGGATGTACTCAGAATCA+AGG - contig528end:11395-11414 MsG0080048905.01.T01:intergenic 40.0%
AGAGTCTTACAAGGGAAATG+GGG - contig528end:12602-12621 MsG0080048905.01.T01:intergenic 40.0%
AGTTTGGTCACTGGTAAACA+CGG + contig528end:11572-11591 MsG0080048905.01.T01:CDS 40.0%
ATAGAATGGACCTGAGGTAA+GGG - contig528end:12139-12158 MsG0080048905.01.T01:intergenic 40.0%
ATAGTATGCCTACAGTACTC+TGG + contig528end:14751-14770 MsG0080048905.01.T01:exon 40.0%
ATCCACTTCCTGCAATTTCA+GGG - contig528end:13696-13715 MsG0080048905.01.T01:intergenic 40.0%
ATGAATGACCAATAGAGGAG+AGG - contig528end:12961-12980 MsG0080048905.01.T01:intergenic 40.0%
CACATATTTGCCATCAAGGT+TGG + contig528end:12639-12658 MsG0080048905.01.T01:intron 40.0%
CATAATGCAATGATCACTCC+AGG + contig528end:14144-14163 MsG0080048905.01.T01:intron 40.0%
CCTTCACATATTTGCCATCA+AGG + contig528end:12635-12654 MsG0080048905.01.T01:intron 40.0%
GACCATCCATATTTCAAGCT+CGG - contig528end:10833-10852 MsG0080048905.01.T01:intergenic 40.0%
GACCCTAACATTTCCTTTAG+AGG - contig528end:12473-12492 MsG0080048905.01.T01:intergenic 40.0%
GACCTCATACCTTACTCTAA+AGG - contig528end:13999-14018 MsG0080048905.01.T01:intergenic 40.0%
GAGAGATGAATGACCAATAG+AGG - contig528end:12966-12985 MsG0080048905.01.T01:intergenic 40.0%
GAGGATGTACTCAGAATCAA+GGG - contig528end:11394-11413 MsG0080048905.01.T01:intergenic 40.0%
GAGGGCTAGGAAAGAAAAAT+AGG - contig528end:11855-11874 MsG0080048905.01.T01:intergenic 40.0%
GGAAGAGCAAAATAGAGAGA+TGG + contig528end:12869-12888 MsG0080048905.01.T01:intron 40.0%
GGATTCACCACTTGATTACA+AGG + contig528end:11809-11828 MsG0080048905.01.T01:CDS 40.0%
GTAAGTATGTGACGACTATC+TGG - contig528end:11525-11544 MsG0080048905.01.T01:intergenic 40.0%
GTAGCTACCTTGTAATCAAG+TGG - contig528end:11819-11838 MsG0080048905.01.T01:intergenic 40.0%
GTCTAGGTTTAATGTGCCAT+AGG + contig528end:11220-11239 MsG0080048905.01.T01:intron 40.0%
TAATCTATTCTCCAGACGGA+AGG + contig528end:13410-13429 MsG0080048905.01.T01:CDS 40.0%
TAATGTGAGTGAGTGCAGTT+TGG - contig528end:9987-10006 MsG0080048905.01.T01:intergenic 40.0%
TACAGCAATCTTAGTGCAGA+AGG + contig528end:14800-14819 MsG0080048905.01.T01:exon 40.0%
TACCGAGCTTGAAATATGGA+TGG + contig528end:10828-10847 MsG0080048905.01.T01:intron 40.0%
TACGTATGGTGTACACCTTT+GGG + contig528end:12551-12570 MsG0080048905.01.T01:intron 40.0%
TAGAGTAAGGTATGAGGTCA+TGG + contig528end:14000-14019 MsG0080048905.01.T01:CDS 40.0%
TAGTATGCCTACAGTACTCT+GGG + contig528end:14752-14771 MsG0080048905.01.T01:exon 40.0%
TCGTGACACTCTTTCTTTCA+AGG + contig528end:10201-10220 MsG0080048905.01.T01:CDS 40.0%
TGAGCCATAGAGTCTTACAA+GGG - contig528end:12610-12629 MsG0080048905.01.T01:intergenic 40.0%
TGCAAAACGAAAGGTTTCAC+TGG - contig528end:15295-15314 MsG0080048905.01.T01:intergenic 40.0%
TGTGTCAAATTGTCAACTGC+AGG + contig528end:10894-10913 MsG0080048905.01.T01:intron 40.0%
TTACGTATGGTGTACACCTT+TGG + contig528end:12550-12569 MsG0080048905.01.T01:intron 40.0%
TTATGTTTACCAAGTCTCCC+AGG - contig528end:11882-11901 MsG0080048905.01.T01:intergenic 40.0%
TTGCCAAAGCATGCTTCTAA+GGG + contig528end:11612-11631 MsG0080048905.01.T01:CDS 40.0%
TTTCGATAACAGACCTGAAG+TGG + contig528end:14946-14965 MsG0080048905.01.T01:exon 40.0%
! AAGGCTTTGATTAAGTCCAG+AGG - contig528end:14623-14642 MsG0080048905.01.T01:intergenic 40.0%
! CCTTGATGGCAAATATGTGA+AGG - contig528end:12638-12657 MsG0080048905.01.T01:intergenic 40.0%
! CGTACCCGAGACTTTATTTA+AGG - contig528end:10313-10332 MsG0080048905.01.T01:intergenic 40.0%
! TAGGAGTTAAAAGTGTGTCG+TGG + contig528end:13467-13486 MsG0080048905.01.T01:CDS 40.0%
! TCCTCTCTTTCGAGTAACAA+CGG - contig528end:12755-12774 MsG0080048905.01.T01:intergenic 40.0%
! TCTGACATATCAAGTTGCAG+AGG - contig528end:13722-13741 MsG0080048905.01.T01:intergenic 40.0%
!! AAACTTTTTCCTGCCAAGAC+GGG - contig528end:13837-13856 MsG0080048905.01.T01:intergenic 40.0%
!! ACCCTTTAGAGTAAGGTATG+AGG + contig528end:13994-14013 MsG0080048905.01.T01:CDS 40.0%
!! AGCTTACCGATTCCTTGTTT+GGG - contig528end:14076-14095 MsG0080048905.01.T01:intergenic 40.0%
!! GAAACTTTTTCCTGCCAAGA+CGG - contig528end:13838-13857 MsG0080048905.01.T01:intergenic 40.0%
!!! GGATTTTTTGCCAACCTTGA+TGG - contig528end:12652-12671 MsG0080048905.01.T01:intergenic 40.0%
AAAACAAGGCGAGTGGATGT+CGG - contig528end:14852-14871 None:intergenic 45.0%
AAACAGGAGAGACACTCTCA+TGG - contig528end:15200-15219 MsG0080048905.01.T01:intergenic 45.0%
AAGGATATTTGGCCTCCCAA+AGG - contig528end:12569-12588 MsG0080048905.01.T01:intergenic 45.0%
ACATGAGAGTCAATGGACAG+GGG + contig528end:13150-13169 MsG0080048905.01.T01:intron 45.0%
ACCGTTGTTACTCGAAAGAG+AGG + contig528end:12751-12770 MsG0080048905.01.T01:intron 45.0%
ACGGCTAAGAAACGAGCATT+GGG - contig528end:10157-10176 MsG0080048905.01.T01:intergenic 45.0%
AGCATGAGATAGAGCAGATC+TGG + contig528end:14268-14287 MsG0080048905.01.T01:intron 45.0%
AGCTTCACTGAGCTATGATC+AGG + contig528end:13110-13129 MsG0080048905.01.T01:intron 45.0%
AGTGACCAAGCCTGTATCAT+TGG - contig528end:11435-11454 MsG0080048905.01.T01:intergenic 45.0%
ATTGCACAACCTGCATAGGA+CGG - contig528end:11332-11351 MsG0080048905.01.T01:intergenic 45.0%
CATCCACTTCCTGCAATTTC+AGG - contig528end:13697-13716 MsG0080048905.01.T01:intergenic 45.0%
CCTAACCCCAAACAAGGAAT+CGG + contig528end:14067-14086 MsG0080048905.01.T01:CDS 45.0%
CTAGCATATGCAATACCAGC+AGG - contig528end:11495-11514 MsG0080048905.01.T01:intergenic 45.0%
CTCATAGTCCTCTCCTCTAT+TGG + contig528end:12950-12969 MsG0080048905.01.T01:intron 45.0%
CTGAATCATTTGGTTGCCTC+TGG + contig528end:14604-14623 MsG0080048905.01.T01:intron 45.0%
CTGAGCCATAGAGTCTTACA+AGG - contig528end:12611-12630 MsG0080048905.01.T01:intergenic 45.0%
CTGCTGGTATTGCATATGCT+AGG + contig528end:11493-11512 MsG0080048905.01.T01:CDS 45.0%
CTGGTATTGCATATGCTAGG+TGG + contig528end:11496-11515 MsG0080048905.01.T01:CDS 45.0%
CTTAGCTACACTTACCTACC+CGG - contig528end:15136-15155 MsG0080048905.01.T01:intergenic 45.0%
CTTCACTGAGCTATGATCAG+GGG + contig528end:13112-13131 MsG0080048905.01.T01:intron 45.0%
GAAAGAGCAACCCCACTAAT+GGG + contig528end:10365-10384 MsG0080048905.01.T01:intron 45.0%
GACATGAGAGTCAATGGACA+GGG + contig528end:13149-13168 MsG0080048905.01.T01:intron 45.0%
GACATTGTAGGTTGCAGTGA+CGG - contig528end:12673-12692 MsG0080048905.01.T01:intergenic 45.0%
GACCTGAAGTGGAATTCTGA+TGG + contig528end:14957-14976 MsG0080048905.01.T01:exon 45.0%
GAGAAACCTAACCCCAAACA+AGG + contig528end:14061-14080 MsG0080048905.01.T01:CDS 45.0%
GAGAGATGGGGAGATAGTAT+AGG + contig528end:12883-12902 MsG0080048905.01.T01:intron 45.0%
GAGTCTTACAAGGGAAATGG+GGG - contig528end:12601-12620 MsG0080048905.01.T01:intergenic 45.0%
GAGTGTCTCTCCTGTTTGTT+GGG + contig528end:15203-15222 MsG0080048905.01.T01:exon 45.0%
GATAGAATGGACCTGAGGTA+AGG - contig528end:12140-12159 MsG0080048905.01.T01:intergenic 45.0%
GATCTGAGTGAAACTTGACG+CGG + contig528end:10284-10303 MsG0080048905.01.T01:intron 45.0%
GATTCTGAGTACATCCTCTG+CGG + contig528end:11396-11415 MsG0080048905.01.T01:CDS 45.0%
GCAGTGCCATCAATTACGTA+TGG + contig528end:12537-12556 MsG0080048905.01.T01:intron 45.0%
GCATATCCTACCCAACAAAC+AGG - contig528end:15216-15235 MsG0080048905.01.T01:intergenic 45.0%
GCATTGGGAGAGAAAGAAGA+AGG - contig528end:10142-10161 MsG0080048905.01.T01:intergenic 45.0%
GCGTTTAACAGTTTGGTCAC+TGG + contig528end:11563-11582 MsG0080048905.01.T01:CDS 45.0%
GCTTCACTGAGCTATGATCA+GGG + contig528end:13111-13130 MsG0080048905.01.T01:intron 45.0%
GGGGTTTCCTTTACAAGAGA+TGG + contig528end:11633-11652 MsG0080048905.01.T01:CDS 45.0%
GTCAGCACATCTGTGTTTGT+TGG - contig528end:10866-10885 MsG0080048905.01.T01:intergenic 45.0%
GTGACATGGTAAGTTGCCAT+TGG - contig528end:12377-12396 MsG0080048905.01.T01:intergenic 45.0%
GTTGCCAAAGCATGCTTCTA+AGG + contig528end:11611-11630 MsG0080048905.01.T01:CDS 45.0%
TACCATGTCCCTGAAATTGC+AGG + contig528end:13685-13704 MsG0080048905.01.T01:intron 45.0%
TAGACTTGGCTGATGTCGAA+TGG + contig528end:11757-11776 MsG0080048905.01.T01:CDS 45.0%
TCAACGGACATGAGAGTCAA+TGG + contig528end:13143-13162 MsG0080048905.01.T01:intron 45.0%
TCATTCTTTCCGTCCTATGC+AGG + contig528end:11320-11339 MsG0080048905.01.T01:intron 45.0%
TCCTTCCTACAAGATTGGAC+CGG + contig528end:12351-12370 MsG0080048905.01.T01:intron 45.0%
TCTATCTTGCATGTCCACTC+TGG - contig528end:11465-11484 MsG0080048905.01.T01:intergenic 45.0%
TGAAAGAGCAACCCCACTAA+TGG + contig528end:10364-10383 MsG0080048905.01.T01:intron 45.0%
TGCCAAAGCATGCTTCTAAG+GGG + contig528end:11613-11632 MsG0080048905.01.T01:CDS 45.0%
TGCCATCAGAATTCCACTTC+AGG - contig528end:14962-14981 MsG0080048905.01.T01:intergenic 45.0%
TGCTGTTGACACTCTAGACT+TGG + contig528end:11743-11762 MsG0080048905.01.T01:CDS 45.0%
TGGACATGCAAGATAGACGA+AGG + contig528end:11468-11487 MsG0080048905.01.T01:CDS 45.0%
TGGATTTGCGGCAATACTTG+TGG + contig528end:10635-10654 MsG0080048905.01.T01:intron 45.0%
TGGCAGTTGTCTGCTTCTTA+AGG + contig528end:14977-14996 MsG0080048905.01.T01:exon 45.0%
TTATACATGTGGACCCCATC+TGG + contig528end:14891-14910 MsG0080048905.01.T01:exon 45.0%
TTCCTGCAATTTCAGGGACA+TGG - contig528end:13690-13709 MsG0080048905.01.T01:intergenic 45.0%
TTGAAAAGACACCTTCCGTC+TGG - contig528end:13424-13443 MsG0080048905.01.T01:intergenic 45.0%
TTGTCAACTGCAGGCAATCT+TGG + contig528end:10903-10922 MsG0080048905.01.T01:intron 45.0%
TTTATCTTTGTGCACCGGGT+AGG + contig528end:15119-15138 MsG0080048905.01.T01:exon 45.0%
TTTCCTAGCCCTCTTAACCT+GGG + contig528end:11862-11881 MsG0080048905.01.T01:intron 45.0%
! ACGAGCCTTTTGGATGGAAA+TGG + contig528end:10330-10349 MsG0080048905.01.T01:intron 45.0%
! AGAGTGTCTCTCCTGTTTGT+TGG + contig528end:15202-15221 MsG0080048905.01.T01:exon 45.0%
! CTTACTCTAAAGGGTCGTTC+TGG - contig528end:13989-14008 MsG0080048905.01.T01:intergenic 45.0%
! GCAGATACGAGCTTTTAGTG+AGG - contig528end:12309-12328 MsG0080048905.01.T01:intergenic 45.0%
! GCTTTTTATAGAGACCGCAG+AGG - contig528end:11413-11432 MsG0080048905.01.T01:intergenic 45.0%
!! AAAGAGTGTCACGAATGACG+AGG - contig528end:10195-10214 MsG0080048905.01.T01:intergenic 45.0%
!! AACACAAAAGGCACCAGATG+GGG - contig528end:14907-14926 MsG0080048905.01.T01:intergenic 45.0%
!! CAGAACGACCCTTTAGAGTA+AGG + contig528end:13987-14006 MsG0080048905.01.T01:CDS 45.0%
!! CAGCTTACCGATTCCTTGTT+TGG - contig528end:14077-14096 MsG0080048905.01.T01:intergenic 45.0%
!! GAACACAAAAGGCACCAGAT+GGG - contig528end:14908-14927 MsG0080048905.01.T01:intergenic 45.0%
!! GCTTACCGATTCCTTGTTTG+GGG - contig528end:14075-14094 MsG0080048905.01.T01:intergenic 45.0%
!! TGAACACAAAAGGCACCAGA+TGG - contig528end:14909-14928 MsG0080048905.01.T01:intergenic 45.0%
!! TGGTCAGCAGTTCTGAATAC+CGG + contig528end:10930-10949 MsG0080048905.01.T01:intron 45.0%
!! TTCCATACCCAGAGTACTGT+AGG - contig528end:14762-14781 MsG0080048905.01.T01:intergenic 45.0%
AAGATAGACGAAGGTCCTGC+TGG + contig528end:11477-11496 MsG0080048905.01.T01:CDS 50.0%
AAGCATGCTTTGGCAACTGC+AGG - contig528end:11608-11627 MsG0080048905.01.T01:intergenic 50.0%
ACCAAGTCTCCCAGGTTAAG+AGG - contig528end:11874-11893 MsG0080048905.01.T01:intergenic 50.0%
ACTGAGCTATGATCAGGGGA+AGG + contig528end:13116-13135 MsG0080048905.01.T01:intron 50.0%
ACTGCCAGAAACTGACCACA+GGG - contig528end:13496-13515 MsG0080048905.01.T01:intergenic 50.0%
ATCAGGGGAAGGAGAGTCAA+CGG + contig528end:13127-13146 MsG0080048905.01.T01:intron 50.0%
ATTGGCCGGTCCAATCTTGT+AGG - contig528end:12359-12378 MsG0080048905.01.T01:intergenic 50.0%
CATGGTAAGTTGCCATTGGC+CGG - contig528end:12373-12392 MsG0080048905.01.T01:intergenic 50.0%
CCAAGTCTCCCAGGTTAAGA+GGG - contig528end:11873-11892 MsG0080048905.01.T01:intergenic 50.0%
CCGTCCGATCTTCAATCCAA+CGG - contig528end:10765-10784 MsG0080048905.01.T01:intergenic 50.0%
CCGTTGGATTGAAGATCGGA+CGG + contig528end:10762-10781 MsG0080048905.01.T01:intron 50.0%
CGGGTAGGTAAGTGTAGCTA+AGG + contig528end:15134-15153 MsG0080048905.01.T01:exon 50.0%
CGTGCAAAGCTAGTGACAGA+AGG - contig528end:14642-14661 MsG0080048905.01.T01:intergenic 50.0%
CTGCAGGCAATCTTGGTTCA+TGG + contig528end:10910-10929 MsG0080048905.01.T01:intron 50.0%
CTTTCCTAGCCCTCTTAACC+TGG + contig528end:11861-11880 MsG0080048905.01.T01:intron 50.0%
GACGGCTAAGAAACGAGCAT+TGG - contig528end:10158-10177 MsG0080048905.01.T01:intergenic 50.0%
GAGGCGATAATCAACTGCGA+CGG - contig528end:10176-10195 MsG0080048905.01.T01:intergenic 50.0%
GGACATGAGAGTCAATGGAC+AGG + contig528end:13148-13167 MsG0080048905.01.T01:intron 50.0%
GTATGGTGTACACCTTTGGG+AGG + contig528end:12554-12573 MsG0080048905.01.T01:intron 50.0%
GTCCCTGAAATTGCAGGAAG+TGG + contig528end:13691-13710 MsG0080048905.01.T01:intron 50.0%
GTGGCCGTTGGATTGAAGAT+CGG + contig528end:10758-10777 MsG0080048905.01.T01:intron 50.0%
TACAAGATTGGACCGGCCAA+TGG + contig528end:12358-12377 MsG0080048905.01.T01:intron 50.0%
TCACGCAGTCAGCATATCTG+TGG + contig528end:10739-10758 MsG0080048905.01.T01:intron 50.0%
TGCCTACAGTACTCTGGGTA+TGG + contig528end:14757-14776 MsG0080048905.01.T01:exon 50.0%
TGCTTCCGGTGCAGAAAACA+AGG - contig528end:14866-14885 MsG0080048905.01.T01:intergenic 50.0%
TTGGGGTTAGGTTTCTCAGC+AGG - contig528end:14058-14077 MsG0080048905.01.T01:intergenic 50.0%
! ACCCCCTTAGAAGCATGCTT+TGG - contig528end:11618-11637 MsG0080048905.01.T01:intergenic 50.0%
! CCGATTCCTTGTTTGGGGTT+AGG - contig528end:14070-14089 MsG0080048905.01.T01:intergenic 50.0%
! GCCAAAGCATGCTTCTAAGG+GGG + contig528end:11614-11633 MsG0080048905.01.T01:CDS 50.0%
! GTCTCTCCTGTTTGTTGGGT+AGG + contig528end:15207-15226 MsG0080048905.01.T01:exon 50.0%
! TAGCTTTGCACGATGGCTCT+TGG + contig528end:14650-14669 MsG0080048905.01.T01:intron 50.0%
! TCAGCAGGAGGCTTCTGAAA+TGG - contig528end:14043-14062 MsG0080048905.01.T01:intergenic 50.0%
!! AAGGGTCGTTCTGGAGAATC+TGG - contig528end:13980-13999 MsG0080048905.01.T01:intergenic 50.0%
!! CTGTCACTAGCTTTGCACGA+TGG + contig528end:14643-14662 MsG0080048905.01.T01:intron 50.0%
!! CTGTTTTGAACGACCCGTCT+TGG + contig528end:13821-13840 MsG0080048905.01.T01:intron 50.0%
!! GGTCAGCAGTTCTGAATACC+GGG + contig528end:10931-10950 MsG0080048905.01.T01:intron 50.0%
!! TGTGGTCAGTTTCTGGCAGT+GGG + contig528end:13496-13515 MsG0080048905.01.T01:CDS 50.0%
!!! ACTCGCCTTGTTTTCTGCAC+CGG + contig528end:14858-14877 MsG0080048905.01.T01:exon 50.0%
ACCCTATCAGAGTGGCAGCT+TGG + contig528end:14823-14842 MsG0080048905.01.T01:exon 55.0%
CACTGCCAGAAACTGACCAC+AGG - contig528end:13497-13516 MsG0080048905.01.T01:intergenic 55.0%
CAGCAGCATAACAAGGGCCA+CGG - contig528end:13600-13619 MsG0080048905.01.T01:intergenic 55.0%
CCCAAGCTGCCACTCTGATA+GGG - contig528end:14827-14846 MsG0080048905.01.T01:intergenic 55.0%
CCCTATCAGAGTGGCAGCTT+GGG + contig528end:14824-14843 MsG0080048905.01.T01:exon 55.0%
CCCTCTTAACCTGGGAGACT+TGG + contig528end:11870-11889 MsG0080048905.01.T01:intron 55.0%
CTGCATCCATATGCAGTCCG+TGG + contig528end:13580-13599 MsG0080048905.01.T01:CDS 55.0%
CTTGCATGTCCACTCTGGCT+GGG - contig528end:11460-11479 MsG0080048905.01.T01:intergenic 55.0%
GAGAGTCAATGGACAGGGGA+AGG + contig528end:13154-13173 MsG0080048905.01.T01:intron 55.0%
GATTCAGGACTCGCAGCATC+TGG - contig528end:13531-13550 MsG0080048905.01.T01:intergenic 55.0%
GCAGAAGGACCCTATCAGAG+TGG + contig528end:14815-14834 MsG0080048905.01.T01:exon 55.0%
GCCGGTCCAATCTTGTAGGA+AGG - contig528end:12355-12374 MsG0080048905.01.T01:intergenic 55.0%
GGGTTAGGTTTCTCAGCAGG+AGG - contig528end:14055-14074 MsG0080048905.01.T01:intergenic 55.0%
GGTGCAGAAAACAAGGCGAG+TGG - contig528end:14859-14878 MsG0080048905.01.T01:intergenic 55.0%
GTCAATGGACAGGGGAAGGA+AGG + contig528end:13158-13177 MsG0080048905.01.T01:intron 55.0%
GTCAGCATATCTGTGGCCGT+TGG + contig528end:10746-10765 MsG0080048905.01.T01:intron 55.0%
GTCTCCCTGTGGTCAGTTTC+TGG + contig528end:13489-13508 MsG0080048905.01.T01:CDS 55.0%
TCCCAAGCTGCCACTCTGAT+AGG - contig528end:14828-14847 MsG0080048905.01.T01:intergenic 55.0%
TCTCCCAGGTTAAGAGGGCT+AGG - contig528end:11868-11887 MsG0080048905.01.T01:intergenic 55.0%
TCTTGCATGTCCACTCTGGC+TGG - contig528end:11461-11480 MsG0080048905.01.T01:intergenic 55.0%
TTTGAACGACCCGTCTTGGC+AGG + contig528end:13825-13844 MsG0080048905.01.T01:intron 55.0%
! AGTCTCGGGTACGAGCCTTT+TGG + contig528end:10320-10339 MsG0080048905.01.T01:intron 55.0%
! TCGGGTACGAGCCTTTTGGA+TGG + contig528end:10324-10343 MsG0080048905.01.T01:intron 55.0%
!! CTGTGGTCAGTTTCTGGCAG+TGG + contig528end:13495-13514 MsG0080048905.01.T01:CDS 55.0%
AGTGTGTCGTGGTCTCCCTG+TGG + contig528end:13478-13497 MsG0080048905.01.T01:CDS 60.0%
! CAAGGGCCACGGACTGCATA+TGG - contig528end:13589-13608 MsG0080048905.01.T01:intergenic 60.0%
GGTCACTGACCCAGCCAGAG+TGG + contig528end:11448-11467 MsG0080048905.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
contig528end gene 9966 15478 9966 ID=MsG0080048905.01;
contig528end mRNA 9966 15478 9966 ID=MsG0080048905.01.T01;Parent=MsG0080048905.01
contig528end exon 9966 10222 9966 ID=MsG0080048905.01.T01.exon;Parent=MsG0080048905.01.T01
contig528end CDS 10106 10222 10106 ID=MsG0080048905.01.T01.cds;Parent=MsG0080048905.01.T01
contig528end CDS 11342 11830 11342 ID=MsG0080048905.01.T01.cds;Parent=MsG0080048905.01.T01
contig528end exon 11342 11830 11342 ID=MsG0080048905.01.T01.exon;Parent=MsG0080048905.01.T01
contig528end CDS 13406 13627 13406 ID=MsG0080048905.01.T01.cds;Parent=MsG0080048905.01.T01
contig528end exon 13406 13627 13406 ID=MsG0080048905.01.T01.exon;Parent=MsG0080048905.01.T01
contig528end CDS 13707 13779 13707 ID=MsG0080048905.01.T01.cds;Parent=MsG0080048905.01.T01
contig528end exon 13707 13779 13707 ID=MsG0080048905.01.T01.exon;Parent=MsG0080048905.01.T01
contig528end CDS 13981 14088 13981 ID=MsG0080048905.01.T01.cds;Parent=MsG0080048905.01.T01
contig528end exon 13981 14088 13981 ID=MsG0080048905.01.T01.exon;Parent=MsG0080048905.01.T01
contig528end CDS 14703 15070 14703 ID=MsG0080048905.01.T01.cds;Parent=MsG0080048905.01.T01
contig528end exon 14703 15478 14703 ID=MsG0080048905.01.T01.exon;Parent=MsG0080048905.01.T01
Gene Sequence

>MsG0080048905.01.T01

ATGGAGTTCACTGAATGTTACAAACAAACGGGTCCTTCTTCTTTCTCTCCCAATGCTCGTTTCTTAGCCGTCGCAGTTGATTATCGCCTCGTCATTCGTGACACTCTTTCTTTCAAGGTTGTGCAATTGTTTTCATGCTTGGACAAAATTAGCTATATTGAATGGGCCCTTGATTCTGAGTACATCCTCTGCGGTCTCTATAAAAAGCCAATGATACAGGCTTGGTCACTGACCCAGCCAGAGTGGACATGCAAGATAGACGAAGGTCCTGCTGGTATTGCATATGCTAGGTGGAGCCCAGATAGTCGTCACATACTTACTACATCAGATTTTCAGTTGCGTTTAACAGTTTGGTCACTGGTAAACACGGCTTGTGTGCACCTGCAGTTGCCAAAGCATGCTTCTAAGGGGGTTTCCTTTACAAGAGATGGAAAATTTGCAGCGATTTGCACAAGGCGTGATTGCAAAGACCATATAAATCTGTTATCTTGTCATTCATGGGAAATAATGGGCATGTTTGCTGTTGACACTCTAGACTTGGCTGATGTCGAATGGTCACCTGACGATAGTTCTATAGTAATATGGGATTCACCACTTGATTACAAGGTTCTAATCTATTCTCCAGACGGAAGGTGTCTTTTCAAGTATCAAGCATATGAAAGTGGATTAGGAGTTAAAAGTGTGTCGTGGTCTCCCTGTGGTCAGTTTCTGGCAGTGGGTAGTTATGACCAGATGCTGCGAGTCCTGAATCATTTAACTTGGAAGACATTTGCAGAGTTTCTGCATCCATATGCAGTCCGTGGCCCTTGTTATGCTGCTGTTTTCAAAGAAGTGGATGAGCCTCTGCAACTTGATATGTCAGAACTGTGTTTGAGCGATGATTTTTCTCAAGGAAACAATGATTCTCCAGAACGACCCTTTAGAGTAAGGTATGAGGTCATGGAAGTTCCAATCAATTTACCATTTCAGAAGCCTCCTGCTGAGAAACCTAACCCCAAACAAGGAATCGGTTTTTTGTCATGGAGCAATGATAGCCAATACATATGTACTCGCAATGATAGTATGCCTACAGTACTCTGGGTATGGAATATTCGACAACTTGAGCTTACAGCAATCTTAGTGCAGAAGGACCCTATCAGAGTGGCAGCTTGGGATCCGACATCCACTCGCCTTGTTTTCTGCACCGGAAGCACACATTTATACATGTGGACCCCATCTGGTGCCTTTTGTGTTCATGTTCCTCTACCACAATTTTCGATAACAGACCTGAAGTGGAATTCTGATGGCAGTTGTCTGCTTCTTAAGGATAAGGAGACATTCTGCTGTGCTGCTGTACCCTTATTGCCAGAATCTAGTGAATATAGCTCAGATGAATGA
Protein sequence

>MsG0080048905.01.T01

MEFTECYKQTGPSSFSPNARFLAVAVDYRLVIRDTLSFKVVQLFSCLDKISYIEWALDSEYILCGLYKKPMIQAWSLTQPEWTCKIDEGPAGIAYARWSPDSRHILTTSDFQLRLTVWSLVNTACVHLQLPKHASKGVSFTRDGKFAAICTRRDCKDHINLLSCHSWEIMGMFAVDTLDLADVEWSPDDSSIVIWDSPLDYKVLIYSPDGRCLFKYQAYESGLGVKSVSWSPCGQFLAVGSYDQMLRVLNHLTWKTFAEFLHPYAVRGPCYAAVFKEVDEPLQLDMSELCLSDDFSQGNNDSPERPFRVRYEVMEVPINLPFQKPPAEKPNPKQGIGFLSWSNDSQYICTRNDSMPTVLWVWNIRQLELTAILVQKDPIRVAAWDPTSTRLVFCTGSTHLYMWTPSGAFCVHVPLPQFSITDLKWNSDGSCLLLKDKETFCCAAVPLLPESSEYSSDE*