AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480019205.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019205.01.T01 MTR_4g025420 98.807 419 5 0 1 419 1 419 0.0 861
MsG0480019205.01.T01 MTR_2g075910 40.351 399 220 5 25 412 62 453 1.94e-95 295
MsG0480019205.01.T01 MTR_8g087400 38.750 400 215 5 30 413 74 459 1.39e-94 292
MsG0480019205.01.T01 MTR_5g075180 40.887 406 202 9 15 413 66 440 1.75e-89 279
MsG0480019205.01.T01 MTR_8g059485 40.874 389 213 8 34 415 61 439 5.26e-89 277
MsG0480019205.01.T01 MTR_8g059485 40.874 389 213 8 34 415 70 448 6.44e-89 277
MsG0480019205.01.T01 MTR_0178s0030 37.783 397 220 4 38 419 145 529 1.00e-87 276
MsG0480019205.01.T01 MTR_3g462150 35.840 399 223 8 35 412 91 477 1.02e-71 233
MsG0480019205.01.T01 MTR_2g098420 26.557 305 178 12 130 407 295 580 1.90e-15 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019205.01.T01 AT2G45260 76.526 426 92 4 1 419 1 425 0.0 682
MsG0480019205.01.T01 AT4G34080 75.532 282 62 3 24 299 1 281 3.77e-152 432
MsG0480019205.01.T01 AT4G33320 71.875 288 73 4 24 304 1 287 2.97e-142 407
MsG0480019205.01.T01 AT3G14870 40.253 395 209 5 34 413 80 462 2.88e-94 291
MsG0480019205.01.T01 AT3G14870 40.253 395 209 5 34 413 80 462 2.88e-94 291
MsG0480019205.01.T01 AT3G14870 40.253 395 209 5 34 413 80 462 2.88e-94 291
MsG0480019205.01.T01 AT3G14870 40.253 395 209 5 34 413 84 466 3.06e-94 291
MsG0480019205.01.T01 AT3G14870 40.253 395 209 5 34 413 81 463 3.06e-94 291
MsG0480019205.01.T01 AT1G53380 39.655 406 215 5 26 413 58 451 1.41e-93 289
MsG0480019205.01.T01 AT1G53380 39.655 406 215 5 26 413 58 451 1.41e-93 289
MsG0480019205.01.T01 AT1G53380 39.655 406 215 5 26 413 58 451 1.41e-93 289
MsG0480019205.01.T01 AT1G53380 39.655 406 215 5 26 413 58 451 1.41e-93 289
MsG0480019205.01.T01 AT1G53380 39.655 406 215 5 26 413 58 451 1.41e-93 289
MsG0480019205.01.T01 AT1G29300 40.863 394 202 7 30 413 80 452 2.13e-88 276
MsG0480019205.01.T01 AT2G30380 41.005 378 178 7 39 413 76 411 2.32e-84 264
MsG0480019205.01.T01 AT3G60680 37.468 395 211 7 37 414 120 495 6.12e-84 266
MsG0480019205.01.T01 AT5G58960 33.990 406 230 9 35 412 85 480 7.57e-69 226
MsG0480019205.01.T01 AT5G58960 33.990 406 230 9 35 412 85 480 7.57e-69 226
MsG0480019205.01.T01 AT5G58960 33.990 406 230 9 35 412 160 555 8.51e-68 225
MsG0480019205.01.T01 AT4G36100 84.466 103 16 0 24 126 1 103 6.76e-57 187
MsG0480019205.01.T01 AT2G32130 43.902 123 64 2 38 159 36 154 1.22e-23 97.1

Find 83 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACCAATTTCTCGCTTTA+AGG 0.079973 4:+16169406 MsG0480019205.01.T01:CDS
GACTGTTGTTCTCACGTAAT+TGG 0.154101 4:-16168627 None:intergenic
TTTCCACAGCTTCTGGATTC+TGG 0.187824 4:-16168687 None:intergenic
TGATGGTTATGCCTGGATTT+TGG 0.227505 4:+16169778 MsG0480019205.01.T01:CDS
GTCAAGGTATTTCAGGTTAA+AGG 0.227565 4:+16169669 MsG0480019205.01.T01:CDS
GCCAAATGTCAAGGTATTTC+AGG 0.238187 4:+16169662 MsG0480019205.01.T01:CDS
CTCACGTAATTGGGCCTCTT+TGG 0.240249 4:-16168617 None:intergenic
GGATCTCTGAATCTTTATTC+TGG 0.244273 4:-16168993 None:intergenic
TAAAACTAGCCAAGTCAATT+TGG 0.245512 4:+16169610 MsG0480019205.01.T01:CDS
ACTAGGGTTTCCACAGCTTC+TGG 0.255097 4:-16168694 None:intergenic
CGAAGCCACCAAACATTCTT+TGG 0.287110 4:-16169326 None:intergenic
GAAAAGAATCTGAAGCTTAG+AGG 0.290385 4:+16169066 MsG0480019205.01.T01:CDS
TCTCCCTTAAAGCGAGAAAT+TGG 0.308545 4:-16169410 None:intergenic
GGAGAAACACACACTGGCTT+TGG 0.323341 4:-16168880 None:intergenic
ACCTGAAATACCTTGACATT+TGG 0.347577 4:-16169663 None:intergenic
TCACCAATTTCTCGCTTTAA+GGG 0.348161 4:+16169407 MsG0480019205.01.T01:CDS
AGATCCGGAGTTAGATCAAC+AGG 0.369847 4:-16169129 None:intergenic
AAAGAATCAGAAGATGGAAA+TGG 0.387079 4:+16169099 MsG0480019205.01.T01:CDS
ACTGTTGTTCTCACGTAATT+GGG 0.390567 4:-16168626 None:intergenic
TATATATGCCAAAGAATGTT+TGG 0.391391 4:+16169318 MsG0480019205.01.T01:CDS
CGTGATCAAGAATCTGATAA+TGG 0.398978 4:+16169725 MsG0480019205.01.T01:CDS
CAGAGTAAAGTTTATCTCTC+TGG 0.401952 4:+16169819 MsG0480019205.01.T01:CDS
CTGGCTTTGGGTTGTTCTCC+CGG 0.408715 4:-16168867 None:intergenic
AAAGCCGAAAGTTGGATTGA+TGG 0.415632 4:+16169761 MsG0480019205.01.T01:CDS
TAGCTTCTTCCATTGGTTGA+GGG 0.420489 4:-16168660 None:intergenic
ATAACCATCAATCCAACTTT+CGG 0.420810 4:-16169765 None:intergenic
GAGAAACACACACTGGCTTT+GGG 0.424352 4:-16168879 None:intergenic
TTTAAGGGAGATTGACCCTT+TGG 0.430442 4:+16169422 MsG0480019205.01.T01:CDS
GTAGCTTCTTCCATTGGTTG+AGG 0.433895 4:-16168661 None:intergenic
CGAGTTCTCCGATGTTTACA+TGG 0.438330 4:+16169698 MsG0480019205.01.T01:CDS
AGATTCAGAGATCCATCAAC+TGG 0.451384 4:+16169002 MsG0480019205.01.T01:CDS
GAGTATGAGCAGCTTGCAGC+TGG 0.453517 4:-16168762 None:intergenic
TGGTTCGTAGCTTCTTCCAT+TGG 0.454285 4:-16168667 None:intergenic
TTGGGCCTCTTTGGCTGCAG+TGG 0.458655 4:-16168608 None:intergenic
CGAAATTATGTGATGGGTGG+AGG 0.459957 4:+16169555 MsG0480019205.01.T01:CDS
AAGAATCAGAAGATGGAAAT+GGG 0.496111 4:+16169100 MsG0480019205.01.T01:CDS
CTGAACTTAAGCATTTCTAC+CGG 0.498210 4:+16168848 MsG0480019205.01.T01:CDS
CTTCTTCCATTGGTTGAGGG+TGG 0.498803 4:-16168657 None:intergenic
AATGATGAAAAGCCGAAAGT+TGG 0.500083 4:+16169753 MsG0480019205.01.T01:CDS
GTTGGATTGATGGTTATGCC+TGG 0.505523 4:+16169771 MsG0480019205.01.T01:CDS
ATCAACATGATGAAAGCAGC+TGG 0.508364 4:+16169210 MsG0480019205.01.T01:CDS
GTGTAAAAGCCAAATTGACT+TGG 0.514838 4:-16169619 None:intergenic
AACATTTGGTTCGATTGAGT+TGG 0.516699 4:-16169253 None:intergenic
ACAGAAGAAGTAAAGAGATC+CGG 0.517971 4:-16169144 None:intergenic
TGGGCCTCTTTGGCTGCAGT+GGG 0.524633 4:-16168607 None:intergenic
AGTTTATCTCTCTGGTATGA+AGG 0.530434 4:+16169827 MsG0480019205.01.T01:CDS
CATGATGAAAGCAGCTGGGT+GGG 0.531337 4:+16169215 MsG0480019205.01.T01:CDS
GCTTTCATCATGTTGATCAA+AGG 0.541157 4:-16169204 None:intergenic
TCAACTGGAAAAGCAGATAG+AGG 0.543038 4:+16169017 MsG0480019205.01.T01:CDS
TAGAGGAGGCTAGTCAAAAG+AGG 0.549461 4:+16169034 MsG0480019205.01.T01:CDS
TCTGCTAAAGAATCAGAAGA+TGG 0.551414 4:+16169093 MsG0480019205.01.T01:CDS
GAAAGTCCACCCTCAACCAA+TGG 0.552084 4:+16168651 MsG0480019205.01.T01:CDS
TTTCCCTGTTGATCTAACTC+CGG 0.555285 4:+16169125 MsG0480019205.01.T01:CDS
GGATCTCTTTACTTCTTCTG+TGG 0.555805 4:+16169146 MsG0480019205.01.T01:CDS
CCTGAAAACGTATGAGGTCA+TGG 0.558925 4:+16168948 MsG0480019205.01.T01:CDS
GATCAGCGAAATTATGTGAT+GGG 0.562322 4:+16169549 MsG0480019205.01.T01:CDS
ATATGCCAAAGAATGTTTGG+TGG 0.568408 4:+16169321 MsG0480019205.01.T01:CDS
AGTGGTAGTTCATCCAAAGA+TGG 0.575405 4:+16169503 MsG0480019205.01.T01:CDS
AGATCAGCGAAATTATGTGA+TGG 0.575546 4:+16169548 MsG0480019205.01.T01:CDS
GCTACCCACTGCAGCCAAAG+AGG 0.582351 4:+16168603 MsG0480019205.01.T01:CDS
GCAGCTAAACGCGAGTCTTG+AGG 0.583544 4:-16168901 None:intergenic
AAGGTATTTCAGGTTAAAGG+AGG 0.584321 4:+16169672 MsG0480019205.01.T01:CDS
TTCTGACCTAGCATGTCCAA+AGG 0.588164 4:-16169438 None:intergenic
CTTCCACCAATCCAAAATCC+AGG 0.590038 4:-16169789 None:intergenic
TCTGACCTAGCATGTCCAAA+GGG 0.600504 4:-16169437 None:intergenic
AGAGGAGGCTAGTCAAAAGA+GGG 0.611909 4:+16169035 MsG0480019205.01.T01:CDS
GAGCCTCCTGAAAACGTATG+AGG 0.612638 4:+16168942 MsG0480019205.01.T01:CDS
GAACCAGAATCCAGAAGCTG+TGG 0.615412 4:+16168684 MsG0480019205.01.T01:CDS
ATTGACCCTTTGGACATGCT+AGG 0.618022 4:+16169432 MsG0480019205.01.T01:CDS
TGAACTTAAGCATTTCTACC+GGG 0.619758 4:+16168849 MsG0480019205.01.T01:CDS
CAGCGAAATTATGTGATGGG+TGG 0.621033 4:+16169552 MsG0480019205.01.T01:CDS
CACGCTTTCCATGTAAACAT+CGG 0.635615 4:-16169706 None:intergenic
TAACTTGTTTGTCAGCAGTG+TGG 0.637561 4:-16168804 None:intergenic
ACATGATGAAAGCAGCTGGG+TGG 0.642099 4:+16169214 MsG0480019205.01.T01:CDS
AGGTATTTCAGGTTAAAGGA+GGG 0.645858 4:+16169673 MsG0480019205.01.T01:CDS
GGTAGTTCATCCAAAGATGG+AGG 0.663656 4:+16169506 MsG0480019205.01.T01:CDS
TCTTTGGATGAACTACCACT+AGG 0.667755 4:-16169500 None:intergenic
CTGCAGGAGCAAATACCTAG+TGG 0.683301 4:+16169485 MsG0480019205.01.T01:CDS
TCAACATGATGAAAGCAGCT+GGG 0.695774 4:+16169211 MsG0480019205.01.T01:CDS
ACTGGAAAAGCAGATAGAGG+AGG 0.696578 4:+16169020 MsG0480019205.01.T01:CDS
TCTTGAGGAGAAACACACAC+TGG 0.711119 4:-16168886 None:intergenic
GATATAAGCTGATTTCAGAG+AGG 0.711231 4:-16168740 None:intergenic
GATCCGGAGTTAGATCAACA+GGG 0.758490 4:-16169128 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAGAAAAACTTGGTAAAA+AGG - Chr4:16169594-16169613 None:intergenic 20.0%
!!! TGTGAATATTTTAGATACTA+GGG - Chr4:16168713-16168732 None:intergenic 20.0%
!!! TTGTGAATATTTTAGATACT+AGG - Chr4:16168714-16168733 None:intergenic 20.0%
! TATATATGCCAAAGAATGTT+TGG + Chr4:16169318-16169337 MsG0480019205.01.T01:CDS 25.0%
!!! AATTTGGCTTTTACACAAAT+TGG + Chr4:16169626-16169645 MsG0480019205.01.T01:CDS 25.0%
AAAGAATCAGAAGATGGAAA+TGG + Chr4:16169099-16169118 MsG0480019205.01.T01:CDS 30.0%
AAGAATCAGAAGATGGAAAT+GGG + Chr4:16169100-16169119 MsG0480019205.01.T01:CDS 30.0%
AATTTCCCAAAAATGGAATC+TGG - Chr4:16169465-16169484 None:intergenic 30.0%
ATAACCATCAATCCAACTTT+CGG - Chr4:16169768-16169787 None:intergenic 30.0%
TAAAACTAGCCAAGTCAATT+TGG + Chr4:16169610-16169629 MsG0480019205.01.T01:CDS 30.0%
! CTTTTCGCATAAACAACATT+TGG - Chr4:16169270-16169289 None:intergenic 30.0%
!! AGAATCCAGATTCCATTTTT+GGG + Chr4:16169457-16169476 MsG0480019205.01.T01:CDS 30.0%
!!! TGGCTAGTTTTAGAAAAACT+TGG - Chr4:16169602-16169621 None:intergenic 30.0%
AATGATGAAAAGCCGAAAGT+TGG + Chr4:16169753-16169772 MsG0480019205.01.T01:CDS 35.0%
ACAGAAGAAGTAAAGAGATC+CGG - Chr4:16169147-16169166 None:intergenic 35.0%
ACCTGAAATACCTTGACATT+TGG - Chr4:16169666-16169685 None:intergenic 35.0%
ACTGTTGTTCTCACGTAATT+GGG - Chr4:16168629-16168648 None:intergenic 35.0%
ACTTGGTAAAAAGGAGTTCT+TGG - Chr4:16169585-16169604 None:intergenic 35.0%
AGATCAGCGAAATTATGTGA+TGG + Chr4:16169548-16169567 MsG0480019205.01.T01:CDS 35.0%
AGTTTATCTCTCTGGTATGA+AGG + Chr4:16169827-16169846 MsG0480019205.01.T01:CDS 35.0%
ATATGCCAAAGAATGTTTGG+TGG + Chr4:16169321-16169340 MsG0480019205.01.T01:CDS 35.0%
CAGAGTAAAGTTTATCTCTC+TGG + Chr4:16169819-16169838 MsG0480019205.01.T01:CDS 35.0%
CGTGATCAAGAATCTGATAA+TGG + Chr4:16169725-16169744 MsG0480019205.01.T01:CDS 35.0%
CTGAACTTAAGCATTTCTAC+CGG + Chr4:16168848-16168867 MsG0480019205.01.T01:CDS 35.0%
GATCAGCGAAATTATGTGAT+GGG + Chr4:16169549-16169568 MsG0480019205.01.T01:CDS 35.0%
GCTTTCATCATGTTGATCAA+AGG - Chr4:16169207-16169226 None:intergenic 35.0%
GGATCTCTGAATCTTTATTC+TGG - Chr4:16168996-16169015 None:intergenic 35.0%
GTGTAAAAGCCAAATTGACT+TGG - Chr4:16169622-16169641 None:intergenic 35.0%
TCACCAATTTCTCGCTTTAA+GGG + Chr4:16169407-16169426 MsG0480019205.01.T01:CDS 35.0%
TCTGCTAAAGAATCAGAAGA+TGG + Chr4:16169093-16169112 MsG0480019205.01.T01:CDS 35.0%
TGAACTTAAGCATTTCTACC+GGG + Chr4:16168849-16168868 MsG0480019205.01.T01:CDS 35.0%
TTCACCAATTTCTCGCTTTA+AGG + Chr4:16169406-16169425 MsG0480019205.01.T01:CDS 35.0%
! AACATTTGGTTCGATTGAGT+TGG - Chr4:16169256-16169275 None:intergenic 35.0%
! CAGAATCCAGATTCCATTTT+TGG + Chr4:16169456-16169475 MsG0480019205.01.T01:CDS 35.0%
! GAAAAGAATCTGAAGCTTAG+AGG + Chr4:16169066-16169085 MsG0480019205.01.T01:CDS 35.0%
! GATATAAGCTGATTTCAGAG+AGG - Chr4:16168743-16168762 None:intergenic 35.0%
! TTCTTTTGAGCCAAATGTCA+AGG + Chr4:16169653-16169672 MsG0480019205.01.T01:CDS 35.0%
!! AAGGTATTTCAGGTTAAAGG+AGG + Chr4:16169672-16169691 MsG0480019205.01.T01:CDS 35.0%
!! AGGTATTTCAGGTTAAAGGA+GGG + Chr4:16169673-16169692 MsG0480019205.01.T01:CDS 35.0%
!! GTCAAGGTATTTCAGGTTAA+AGG + Chr4:16169669-16169688 MsG0480019205.01.T01:CDS 35.0%
AAAAACGATGCCTCCATCTT+TGG - Chr4:16169519-16169538 None:intergenic 40.0%
AAAGCCGAAAGTTGGATTGA+TGG + Chr4:16169761-16169780 MsG0480019205.01.T01:CDS 40.0%
AGATTCAGAGATCCATCAAC+TGG + Chr4:16169002-16169021 MsG0480019205.01.T01:CDS 40.0%
AGTGGTAGTTCATCCAAAGA+TGG + Chr4:16169503-16169522 MsG0480019205.01.T01:CDS 40.0%
ATCAACATGATGAAAGCAGC+TGG + Chr4:16169210-16169229 MsG0480019205.01.T01:CDS 40.0%
CACGCTTTCCATGTAAACAT+CGG - Chr4:16169709-16169728 None:intergenic 40.0%
CCTGCAGAATTTCCCAAAAA+TGG - Chr4:16169472-16169491 None:intergenic 40.0%
GACTGTTGTTCTCACGTAAT+TGG - Chr4:16168630-16168649 None:intergenic 40.0%
GGATCTCTTTACTTCTTCTG+TGG + Chr4:16169146-16169165 MsG0480019205.01.T01:CDS 40.0%
TCAACATGATGAAAGCAGCT+GGG + Chr4:16169211-16169230 MsG0480019205.01.T01:CDS 40.0%
TCAACTGGAAAAGCAGATAG+AGG + Chr4:16169017-16169036 MsG0480019205.01.T01:CDS 40.0%
TCTCCCTTAAAGCGAGAAAT+TGG - Chr4:16169413-16169432 None:intergenic 40.0%
TCTTTGGATGAACTACCACT+AGG - Chr4:16169503-16169522 None:intergenic 40.0%
TTTAAGGGAGATTGACCCTT+TGG + Chr4:16169422-16169441 MsG0480019205.01.T01:CDS 40.0%
TTTCCCTGTTGATCTAACTC+CGG + Chr4:16169125-16169144 MsG0480019205.01.T01:CDS 40.0%
! GCCAAATGTCAAGGTATTTC+AGG + Chr4:16169662-16169681 MsG0480019205.01.T01:CDS 40.0%
! GTCAGCAGTGTGGATTTTAT+CGG - Chr4:16168797-16168816 None:intergenic 40.0%
! GTTATGCCTGGATTTTGGAT+TGG + Chr4:16169783-16169802 MsG0480019205.01.T01:CDS 40.0%
! TAGCTTCTTCCATTGGTTGA+GGG - Chr4:16168663-16168682 None:intergenic 40.0%
! TCAGCAGTGTGGATTTTATC+GGG - Chr4:16168796-16168815 None:intergenic 40.0%
! TGATGGTTATGCCTGGATTT+TGG + Chr4:16169778-16169797 MsG0480019205.01.T01:CDS 40.0%
! TGGATTTTATCGGGGTCATA+GGG - Chr4:16168787-16168806 None:intergenic 40.0%
!! CCATTTTTGGGAAATTCTGC+AGG + Chr4:16169469-16169488 MsG0480019205.01.T01:CDS 40.0%
!! CTATCTGCTTTTCCAGTTGA+TGG - Chr4:16169017-16169036 None:intergenic 40.0%
!! TAACTTGTTTGTCAGCAGTG+TGG - Chr4:16168807-16168826 None:intergenic 40.0%
!!! AAGATGGAGGCATCGTTTTT+TGG + Chr4:16169519-16169538 MsG0480019205.01.T01:CDS 40.0%
ACTGGAAAAGCAGATAGAGG+AGG + Chr4:16169020-16169039 MsG0480019205.01.T01:CDS 45.0%
AGATCCGGAGTTAGATCAAC+AGG - Chr4:16169132-16169151 None:intergenic 45.0%
ATTGACCCTTTGGACATGCT+AGG + Chr4:16169432-16169451 MsG0480019205.01.T01:CDS 45.0%
CCTGAAAACGTATGAGGTCA+TGG + Chr4:16168948-16168967 MsG0480019205.01.T01:CDS 45.0%
CGAAGCCACCAAACATTCTT+TGG - Chr4:16169329-16169348 None:intergenic 45.0%
CGAGTTCTCCGATGTTTACA+TGG + Chr4:16169698-16169717 MsG0480019205.01.T01:CDS 45.0%
CTTCCACCAATCCAAAATCC+AGG - Chr4:16169792-16169811 None:intergenic 45.0%
GATCCGGAGTTAGATCAACA+GGG - Chr4:16169131-16169150 None:intergenic 45.0%
GGTAGTTCATCCAAAGATGG+AGG + Chr4:16169506-16169525 MsG0480019205.01.T01:CDS 45.0%
TCTGACCTAGCATGTCCAAA+GGG - Chr4:16169440-16169459 None:intergenic 45.0%
TCTTGAGGAGAAACACACAC+TGG - Chr4:16168889-16168908 None:intergenic 45.0%
TGGTTCGTAGCTTCTTCCAT+TGG - Chr4:16168670-16168689 None:intergenic 45.0%
TTCTGACCTAGCATGTCCAA+AGG - Chr4:16169441-16169460 None:intergenic 45.0%
TTTCCACAGCTTCTGGATTC+TGG - Chr4:16168690-16168709 None:intergenic 45.0%
! AGAGGAGGCTAGTCAAAAGA+GGG + Chr4:16169035-16169054 MsG0480019205.01.T01:CDS 45.0%
! CAGCAGTGTGGATTTTATCG+GGG - Chr4:16168795-16168814 None:intergenic 45.0%
! CAGCGAAATTATGTGATGGG+TGG + Chr4:16169552-16169571 MsG0480019205.01.T01:CDS 45.0%
! CCATGACCTCATACGTTTTC+AGG - Chr4:16168951-16168970 None:intergenic 45.0%
! GTAGCTTCTTCCATTGGTTG+AGG - Chr4:16168664-16168683 None:intergenic 45.0%
! GTGGATTTTATCGGGGTCAT+AGG - Chr4:16168788-16168807 None:intergenic 45.0%
! GTTGGATTGATGGTTATGCC+TGG + Chr4:16169771-16169790 MsG0480019205.01.T01:CDS 45.0%
! TAGAGGAGGCTAGTCAAAAG+AGG + Chr4:16169034-16169053 MsG0480019205.01.T01:CDS 45.0%
!! ATGCCTGGATTTTGGATTGG+TGG + Chr4:16169786-16169805 MsG0480019205.01.T01:CDS 45.0%
!! CGAAATTATGTGATGGGTGG+AGG + Chr4:16169555-16169574 MsG0480019205.01.T01:CDS 45.0%
!! GAGAAACACACACTGGCTTT+GGG - Chr4:16168882-16168901 None:intergenic 45.0%
!! TGACCTCATACGTTTTCAGG+AGG - Chr4:16168948-16168967 None:intergenic 45.0%
ACATGATGAAAGCAGCTGGG+TGG + Chr4:16169214-16169233 MsG0480019205.01.T01:CDS 50.0%
ACTAGGGTTTCCACAGCTTC+TGG - Chr4:16168697-16168716 None:intergenic 50.0%
CATGATGAAAGCAGCTGGGT+GGG + Chr4:16169215-16169234 MsG0480019205.01.T01:CDS 50.0%
CTCACGTAATTGGGCCTCTT+TGG - Chr4:16168620-16168639 None:intergenic 50.0%
CTGCAGGAGCAAATACCTAG+TGG + Chr4:16169485-16169504 MsG0480019205.01.T01:CDS 50.0%
GAAAGTCCACCCTCAACCAA+TGG + Chr4:16168651-16168670 MsG0480019205.01.T01:CDS 50.0%
GAACCAGAATCCAGAAGCTG+TGG + Chr4:16168684-16168703 MsG0480019205.01.T01:CDS 50.0%
GAGCCTCCTGAAAACGTATG+AGG + Chr4:16168942-16168961 MsG0480019205.01.T01:CDS 50.0%
! CTTCTTCCATTGGTTGAGGG+TGG - Chr4:16168660-16168679 None:intergenic 50.0%
!! GGAGAAACACACACTGGCTT+TGG - Chr4:16168883-16168902 None:intergenic 50.0%
GAGTATGAGCAGCTTGCAGC+TGG - Chr4:16168765-16168784 None:intergenic 55.0%
GCAGCTAAACGCGAGTCTTG+AGG - Chr4:16168904-16168923 None:intergenic 55.0%
!! CTGGCTTTGGGTTGTTCTCC+CGG - Chr4:16168870-16168889 None:intergenic 55.0%
GCTACCCACTGCAGCCAAAG+AGG + Chr4:16168603-16168622 MsG0480019205.01.T01:CDS 60.0%
TGGGCCTCTTTGGCTGCAGT+GGG - Chr4:16168610-16168629 None:intergenic 60.0%
TTGGGCCTCTTTGGCTGCAG+TGG - Chr4:16168611-16168630 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 16168601 16169860 16168601 ID=MsG0480019205.01;Name=MsG0480019205.01
Chr4 mRNA 16168601 16169860 16168601 ID=MsG0480019205.01.T01;Parent=MsG0480019205.01;Name=MsG0480019205.01.T01;_AED=0.39;_eAED=0.39;_QI=0|-1|0|1|-1|1|1|0|419
Chr4 exon 16168601 16169860 16168601 ID=MsG0480019205.01.T01:exon:4292;Parent=MsG0480019205.01.T01
Chr4 CDS 16168601 16169860 16168601 ID=MsG0480019205.01.T01:cds;Parent=MsG0480019205.01.T01
Gene Sequence

>MsG0480019205.01.T01

ATGCTACCCACTGCAGCCAAAGAGGCCCAATTACGTGAGAACAACAGTCAGAAAGTCCACCCTCAACCAATGGAAGAAGCTACGAACCAGAATCCAGAAGCTGTGGAAACCCTAGTATCTAAAATATTCACAAATATCTCCTCTCTGAAATCAGCTTATATCCAGCTGCAAGCTGCTCATACTCCCTATGACCCCGATAAAATCCACACTGCTGACAAACAAGTTATTAGTGAGCTGAAAAATCTATCTGAACTTAAGCATTTCTACCGGGAGAACAACCCAAAGCCAGTGTGTGTTTCTCCTCAAGACTCGCGTTTAGCTGCAGAAATTCAAGAGCAACAGAGCCTCCTGAAAACGTATGAGGTCATGGTTAAGAAGTTTCAGTCTGAAATCCAGAATAAAGATTCAGAGATCCATCAACTGGAAAAGCAGATAGAGGAGGCTAGTCAAAAGAGGGCAAAACTAGAAAAGAATCTGAAGCTTAGAGGTTTGTCTGCTAAAGAATCAGAAGATGGAAATGGGTTTTTCCCTGTTGATCTAACTCCGGATCTCTTTACTTCTTCTGTGGAAGCAGCTGCGAAAGCAGTTAATGATTTTTCTAAACCTTTGATCAACATGATGAAAGCAGCTGGGTGGGATCTTGATGCTGCTGCCAACTCAATCGAACCAAATGTTGTTTATGCGAAAAGAGCTCATAAGAAATATGCATTCGAGTCTTATATATGCCAAAGAATGTTTGGTGGCTTCGAGCAAGAAAGCTTCTCTGTCAAATCAGACAATATTGCAGTCAATAAAGAGAGCTTCTTTCACCAATTTCTCGCTTTAAGGGAGATTGACCCTTTGGACATGCTAGGTCAGAATCCAGATTCCATTTTTGGGAAATTCTGCAGGAGCAAATACCTAGTGGTAGTTCATCCAAAGATGGAGGCATCGTTTTTTGGAAATCTAGATCAGCGAAATTATGTGATGGGTGGAGGACATCCAAGAACTCCTTTTTACCAAGTTTTTCTAAAACTAGCCAAGTCAATTTGGCTTTTACACAAATTGGCTTATTCTTTTGAGCCAAATGTCAAGGTATTTCAGGTTAAAGGAGGGAGCGAGTTCTCCGATGTTTACATGGAAAGCGTGATCAAGAATCTGATAATGGAAGAAAATGATGAAAAGCCGAAAGTTGGATTGATGGTTATGCCTGGATTTTGGATTGGTGGAAGTGTGATTCAGAGTAAAGTTTATCTCTCTGGTATGAAGGTAGCTGAATGA
Protein sequence

>MsG0480019205.01.T01

MLPTAAKEAQLRENNSQKVHPQPMEEATNQNPEAVETLVSKIFTNISSLKSAYIQLQAAHTPYDPDKIHTADKQVISELKNLSELKHFYRENNPKPVCVSPQDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEIHQLEKQIEEASQKRAKLEKNLKLRGLSAKESEDGNGFFPVDLTPDLFTSSVEAAAKAVNDFSKPLINMMKAAGWDLDAAANSIEPNVVYAKRAHKKYAFESYICQRMFGGFEQESFSVKSDNIAVNKESFFHQFLALREIDPLDMLGQNPDSIFGKFCRSKYLVVVHPKMEASFFGNLDQRNYVMGGGHPRTPFYQVFLKLAKSIWLLHKLAYSFEPNVKVFQVKGGSEFSDVYMESVIKNLIMEENDEKPKVGLMVMPGFWIGGSVIQSKVYLSGMKVAE*