Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019274.01.T01 | XP_003605284.1 | 99.541 | 218 | 1 | 0 | 1 | 218 | 1 | 218 | 2.19E-158 | 447 |
| MsG0480019274.01.T04 | XP_014490349.1 | 82.609 | 92 | 11 | 1 | 2 | 88 | 134 | 225 | 8.16E-45 | 154 |
| MsG0480019274.01.T03 | XP_003605284.1 | 98.913 | 92 | 1 | 0 | 1 | 92 | 127 | 218 | 5.71E-59 | 189 |
| MsG0480019274.01.T02 | XP_003605284.1 | 99.432 | 176 | 1 | 0 | 1 | 176 | 43 | 218 | 8.10E-126 | 362 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019274.01.T01 | Q9SHD3 | 72.768 | 224 | 47 | 3 | 5 | 218 | 3 | 222 | 1.06E-113 | 327 |
| MsG0480019274.01.T02 | Q9SHD3 | 71.892 | 185 | 39 | 2 | 1 | 176 | 42 | 222 | 1.31E-92 | 271 |
| MsG0480019274.01.T03 | Q9SHD3 | 72.277 | 101 | 19 | 1 | 1 | 92 | 122 | 222 | 5.49E-46 | 149 |
| MsG0480019274.01.T04 | Q9SHD3 | 66.667 | 96 | 23 | 1 | 2 | 88 | 127 | 222 | 3.19E-38 | 129 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019274.01.T01 | G7JIA5 | 99.541 | 218 | 1 | 0 | 1 | 218 | 1 | 218 | 1.04e-158 | 447 |
| MsG0480019274.01.T02 | G7JIA5 | 99.432 | 176 | 1 | 0 | 1 | 176 | 43 | 218 | 3.87e-126 | 362 |
| MsG0480019274.01.T03 | G7JIA5 | 98.913 | 92 | 1 | 0 | 1 | 92 | 127 | 218 | 2.73e-59 | 189 |
| MsG0480019274.01.T04 | A0A0S3SXN7 | 82.609 | 92 | 11 | 1 | 2 | 88 | 134 | 225 | 3.90e-45 | 154 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180005272.01 | MsG0480019274.01 | 0.803338 | 3.655997e-49 | 1.832454e-46 |
| MsG0480019274.01 | MsG0580025746.01 | 0.850348 | 1.799891e-60 | 3.515126e-57 |
| MsG0380017997.01 | MsG0480019274.01 | 0.824468 | 7.939610e-54 | 7.038408e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0480019274.01 | MsG0780040639.01 | PPI |
| MsG0480019274.01 | MsG0780040639.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019274.01.T01 | MTR_4g028060 | 99.541 | 218 | 1 | 0 | 1 | 218 | 1 | 218 | 2.65e-162 | 447 |
| MsG0480019274.01.T01 | MTR_7g081130 | 46.541 | 159 | 79 | 2 | 29 | 187 | 11 | 163 | 1.06e-45 | 150 |
| MsG0480019274.01.T01 | MTR_8g007380 | 45.732 | 164 | 81 | 1 | 24 | 187 | 5 | 160 | 1.35e-45 | 150 |
| MsG0480019274.01.T01 | MTR_7g094880 | 47.541 | 122 | 63 | 1 | 65 | 186 | 63 | 183 | 3.94e-37 | 129 |
| MsG0480019274.01.T01 | MTR_7g094880 | 49.565 | 115 | 57 | 1 | 72 | 186 | 85 | 198 | 5.43e-37 | 129 |
| MsG0480019274.01.T01 | MTR_2g088860 | 43.169 | 183 | 93 | 3 | 27 | 199 | 24 | 205 | 1.84e-33 | 120 |
| MsG0480019274.01.T04 | MTR_4g028060 | 93.103 | 87 | 6 | 0 | 2 | 88 | 132 | 218 | 3.92e-45 | 144 |
| MsG0480019274.01.T04 | MTR_8g007380 | 48.214 | 56 | 29 | 0 | 2 | 57 | 105 | 160 | 3.42e-13 | 62.0 |
| MsG0480019274.01.T04 | MTR_7g081130 | 48.214 | 56 | 29 | 0 | 2 | 57 | 108 | 163 | 4.26e-13 | 62.0 |
| MsG0480019274.01.T04 | MTR_7g094880 | 49.091 | 55 | 28 | 0 | 2 | 56 | 129 | 183 | 9.46e-13 | 61.2 |
| MsG0480019274.01.T04 | MTR_7g094880 | 49.091 | 55 | 28 | 0 | 2 | 56 | 144 | 198 | 1.07e-12 | 61.2 |
| MsG0480019274.01.T03 | MTR_4g028060 | 98.913 | 92 | 1 | 0 | 1 | 92 | 127 | 218 | 6.92e-63 | 189 |
| MsG0480019274.01.T03 | MTR_7g081130 | 52.459 | 61 | 29 | 0 | 1 | 61 | 103 | 163 | 8.98e-18 | 74.3 |
| MsG0480019274.01.T03 | MTR_8g007380 | 50.820 | 61 | 30 | 0 | 1 | 61 | 100 | 160 | 1.91e-17 | 73.6 |
| MsG0480019274.01.T03 | MTR_7g094880 | 50.000 | 60 | 30 | 0 | 1 | 60 | 124 | 183 | 5.14e-16 | 70.1 |
| MsG0480019274.01.T03 | MTR_7g094880 | 50.000 | 60 | 30 | 0 | 1 | 60 | 139 | 198 | 6.50e-16 | 70.1 |
| MsG0480019274.01.T02 | MTR_4g028060 | 99.432 | 176 | 1 | 0 | 1 | 176 | 43 | 218 | 9.81e-130 | 362 |
| MsG0480019274.01.T02 | MTR_7g081130 | 50.769 | 130 | 64 | 0 | 16 | 145 | 34 | 163 | 1.16e-44 | 146 |
| MsG0480019274.01.T02 | MTR_8g007380 | 52.846 | 123 | 58 | 0 | 23 | 145 | 38 | 160 | 3.17e-43 | 142 |
| MsG0480019274.01.T02 | MTR_7g094880 | 47.541 | 122 | 63 | 1 | 23 | 144 | 63 | 183 | 1.56e-37 | 129 |
| MsG0480019274.01.T02 | MTR_7g094880 | 49.565 | 115 | 57 | 1 | 30 | 144 | 85 | 198 | 2.28e-37 | 129 |
| MsG0480019274.01.T02 | MTR_2g088860 | 48.201 | 139 | 71 | 1 | 20 | 157 | 67 | 205 | 9.65e-31 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019274.01.T01 | AT2G45080 | 72.768 | 224 | 47 | 3 | 5 | 218 | 3 | 222 | 1.08e-114 | 327 |
| MsG0480019274.01.T01 | AT3G60550 | 70.044 | 227 | 57 | 1 | 3 | 218 | 4 | 230 | 4.25e-113 | 323 |
| MsG0480019274.01.T01 | AT2G44740 | 44.654 | 159 | 84 | 2 | 31 | 189 | 13 | 167 | 1.08e-43 | 145 |
| MsG0480019274.01.T01 | AT5G07450 | 40.351 | 171 | 86 | 2 | 29 | 193 | 21 | 181 | 6.86e-41 | 139 |
| MsG0480019274.01.T01 | AT5G61650 | 40.373 | 161 | 88 | 1 | 29 | 189 | 23 | 175 | 6.25e-39 | 134 |
| MsG0480019274.01.T01 | AT3G63120 | 42.958 | 142 | 78 | 2 | 59 | 200 | 58 | 196 | 2.79e-38 | 132 |
| MsG0480019274.01.T01 | AT3G63120 | 42.958 | 142 | 78 | 2 | 59 | 200 | 58 | 196 | 2.79e-38 | 132 |
| MsG0480019274.01.T01 | AT3G21870 | 39.394 | 165 | 97 | 2 | 25 | 189 | 21 | 182 | 1.15e-35 | 125 |
| MsG0480019274.01.T01 | AT3G05327 | 37.725 | 167 | 97 | 2 | 25 | 187 | 27 | 190 | 5.91e-33 | 118 |
| MsG0480019274.01.T04 | AT2G45080 | 66.667 | 96 | 23 | 1 | 2 | 88 | 127 | 222 | 3.25e-39 | 129 |
| MsG0480019274.01.T04 | AT3G60550 | 65.306 | 98 | 23 | 1 | 2 | 88 | 133 | 230 | 2.35e-38 | 127 |
| MsG0480019274.01.T04 | AT3G63120 | 43.284 | 67 | 36 | 1 | 4 | 70 | 132 | 196 | 1.49e-14 | 66.2 |
| MsG0480019274.01.T04 | AT3G63120 | 43.284 | 67 | 36 | 1 | 4 | 70 | 132 | 196 | 1.49e-14 | 66.2 |
| MsG0480019274.01.T04 | AT5G07450 | 45.161 | 62 | 34 | 0 | 2 | 63 | 120 | 181 | 4.09e-14 | 64.7 |
| MsG0480019274.01.T04 | AT5G61650 | 46.552 | 58 | 31 | 0 | 2 | 59 | 118 | 175 | 6.34e-13 | 61.6 |
| MsG0480019274.01.T04 | AT2G44740 | 44.828 | 58 | 32 | 0 | 2 | 59 | 110 | 167 | 2.61e-12 | 59.7 |
| MsG0480019274.01.T03 | AT2G45080 | 72.277 | 101 | 19 | 1 | 1 | 92 | 122 | 222 | 5.60e-47 | 149 |
| MsG0480019274.01.T03 | AT3G60550 | 69.903 | 103 | 20 | 1 | 1 | 92 | 128 | 230 | 6.18e-46 | 147 |
| MsG0480019274.01.T03 | AT5G07450 | 44.776 | 67 | 37 | 0 | 1 | 67 | 115 | 181 | 2.66e-17 | 73.6 |
| MsG0480019274.01.T03 | AT3G63120 | 43.243 | 74 | 40 | 1 | 1 | 74 | 125 | 196 | 5.04e-17 | 72.8 |
| MsG0480019274.01.T03 | AT3G63120 | 43.243 | 74 | 40 | 1 | 1 | 74 | 125 | 196 | 5.04e-17 | 72.8 |
| MsG0480019274.01.T03 | AT2G44740 | 46.032 | 63 | 34 | 0 | 1 | 63 | 105 | 167 | 2.43e-16 | 70.5 |
| MsG0480019274.01.T03 | AT5G61650 | 46.032 | 63 | 34 | 0 | 1 | 63 | 113 | 175 | 3.23e-16 | 70.5 |
| MsG0480019274.01.T03 | AT3G05327 | 39.344 | 61 | 37 | 0 | 1 | 61 | 130 | 190 | 1.96e-12 | 60.5 |
| MsG0480019274.01.T02 | AT2G45080 | 71.892 | 185 | 39 | 2 | 1 | 176 | 42 | 222 | 1.33e-93 | 271 |
| MsG0480019274.01.T02 | AT3G60550 | 69.519 | 187 | 46 | 1 | 1 | 176 | 44 | 230 | 1.01e-91 | 267 |
| MsG0480019274.01.T02 | AT2G44740 | 53.390 | 118 | 55 | 0 | 30 | 147 | 50 | 167 | 5.20e-43 | 142 |
| MsG0480019274.01.T02 | AT5G07450 | 46.094 | 128 | 69 | 0 | 24 | 151 | 54 | 181 | 2.65e-40 | 135 |
| MsG0480019274.01.T02 | AT5G61650 | 49.153 | 118 | 60 | 0 | 30 | 147 | 58 | 175 | 4.94e-39 | 132 |
| MsG0480019274.01.T02 | AT3G63120 | 42.958 | 142 | 78 | 2 | 17 | 158 | 58 | 196 | 8.30e-39 | 132 |
| MsG0480019274.01.T02 | AT3G63120 | 42.958 | 142 | 78 | 2 | 17 | 158 | 58 | 196 | 8.30e-39 | 132 |
| MsG0480019274.01.T02 | AT3G21870 | 44.531 | 128 | 71 | 0 | 20 | 147 | 55 | 182 | 2.06e-32 | 115 |
| MsG0480019274.01.T02 | AT3G05327 | 40.157 | 127 | 72 | 1 | 23 | 145 | 64 | 190 | 2.03e-29 | 107 |
Find 29 sgRNAs with CRISPR-Local
Find 69 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTAAACCCAAGATTATTT+TGG | 0.173257 | 4:+17564318 | None:intergenic |
| ACTTCTCATAACAACTATTA+TGG | 0.285093 | 4:-17564273 | MsG0480019274.01.T01:CDS |
| GCTAGAACATTTATCACTAA+TGG | 0.307122 | 4:+17564548 | None:intergenic |
| TGAATCTTCTTTGTATGAAT+AGG | 0.344032 | 4:+17564577 | None:intergenic |
| CTAGAACATTTATCACTAAT+GGG | 0.347684 | 4:+17564549 | None:intergenic |
| TGAGAGCTATTGTTCCCATT+TGG | 0.387926 | 4:-17563487 | MsG0480019274.01.T01:CDS |
| AATTCATACTTTGCAAAAGT+TGG | 0.389350 | 4:-17563597 | MsG0480019274.01.T01:CDS |
| GATTTCTTCAGCACACCTTA+AGG | 0.402870 | 4:+17563422 | None:intergenic |
| TGCTTACTTCCCTCTCCAAA+TGG | 0.411186 | 4:+17563472 | None:intergenic |
| TAAGATTGAATGGTTAAATC+AGG | 0.411388 | 4:+17564419 | None:intergenic |
| TCTCTCTAAATAAGATTGAA+TGG | 0.421099 | 4:+17564409 | None:intergenic |
| GAGAGGGAAGTAAGCATTGG+AGG | 0.422508 | 4:-17563465 | MsG0480019274.01.T01:CDS |
| ATACACACGTGCTGGACCTT+CGG | 0.437594 | 4:-17564378 | MsG0480019274.01.T01:CDS |
| AGGGAAGTAAGCATTGGAGG+AGG | 0.444484 | 4:-17563462 | MsG0480019274.01.T01:CDS |
| TTGCTTATGTCTATATTGAT+CGG | 0.466190 | 4:-17564346 | MsG0480019274.01.T01:CDS |
| TCATACTTTGCAAAAGTTGG+TGG | 0.491361 | 4:-17563594 | MsG0480019274.01.T01:CDS |
| AACAAATGAATTGAATGAGT+TGG | 0.500361 | 4:-17563565 | MsG0480019274.01.T01:CDS |
| ACCACATTGAGAGGACCTTA+AGG | 0.502225 | 4:-17563437 | MsG0480019274.01.T01:CDS |
| GCTGAAGAAATCAAAGAAAG+AGG | 0.532244 | 4:-17563411 | MsG0480019274.01.T01:CDS |
| TTGGAGAGGGAAGTAAGCAT+TGG | 0.532407 | 4:-17563468 | MsG0480019274.01.T01:CDS |
| GCTTACTTCCCTCTCCAAAT+GGG | 0.534304 | 4:+17563473 | None:intergenic |
| GGGAAGTAAGCATTGGAGGA+GGG | 0.593739 | 4:-17563461 | MsG0480019274.01.T01:CDS |
| CTATTGTTCCCATTTGGAGA+GGG | 0.594811 | 4:-17563481 | MsG0480019274.01.T01:CDS |
| GCTATTGTTCCCATTTGGAG+AGG | 0.621485 | 4:-17563482 | MsG0480019274.01.T01:CDS |
| GAGGAGGGTACCACATTGAG+AGG | 0.624143 | 4:-17563446 | MsG0480019274.01.T01:CDS |
| TTCATTAATTGAGAGAAACA+TGG | 0.648460 | 4:-17564525 | MsG0480019274.01.T01:CDS |
| TAGAACATTTATCACTAATG+GGG | 0.651890 | 4:+17564550 | None:intergenic |
| ACCTTAAGGTCCTCTCAATG+TGG | 0.678220 | 4:+17563436 | None:intergenic |
| TAAGCAACAACATAAACCGA+AGG | 0.681604 | 4:+17564362 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATTTAACAACAAATA+TGG | - | Chr4:17564248-17564267 | MsG0480019274.01.T01:CDS | 10.0% |
| !! | ATTAATGGTCAAATTTAATT+TGG | - | Chr4:17564103-17564122 | MsG0480019274.01.T01:intron | 15.0% |
| !! | TTGTTTATTAAAATCTCAAT+CGG | - | Chr4:17563919-17563938 | MsG0480019274.01.T01:intron | 15.0% |
| !!! | AATTTCTTACATTATTTTCA+AGG | - | Chr4:17563857-17563876 | MsG0480019274.01.T01:intron | 15.0% |
| !!! | ATAAACATCTTGAATTTTAA+TGG | + | Chr4:17564196-17564215 | None:intergenic | 15.0% |
| !!! | TTTCTATATTTAGTTTATTG+TGG | - | Chr4:17564343-17564362 | MsG0480019274.01.T01:CDS | 15.0% |
| !! | AAAACAAATAGAGAAAAAGA+AGG | + | Chr4:17563807-17563826 | None:intergenic | 20.0% |
| !!! | TTATTTTCAAGGTAACAATT+TGG | - | Chr4:17563868-17563887 | MsG0480019274.01.T01:intron | 20.0% |
| !!! | TTTTTTTCTCTTTAATCTGA+CGG | - | Chr4:17564062-17564081 | MsG0480019274.01.T01:intron | 20.0% |
| ! | AACAAATGAATTGAATGAGT+TGG | - | Chr4:17564447-17564466 | MsG0480019274.01.T01:CDS | 25.0% |
| ! | AATTCATACTTTGCAAAAGT+TGG | - | Chr4:17564415-17564434 | MsG0480019274.01.T01:CDS | 25.0% |
| ! | ACTTCTCATAACAACTATTA+TGG | - | Chr4:17563739-17563758 | MsG0480019274.01.T01:intron | 25.0% |
| ! | CTAGAACATTTATCACTAAT+GGG | + | Chr4:17563466-17563485 | None:intergenic | 25.0% |
| ! | TAAGATTGAATGGTTAAATC+AGG | + | Chr4:17563596-17563615 | None:intergenic | 25.0% |
| ! | TAGAACATTTATCACTAATG+GGG | + | Chr4:17563465-17563484 | None:intergenic | 25.0% |
| ! | TCTCTCTAAATAAGATTGAA+TGG | + | Chr4:17563606-17563625 | None:intergenic | 25.0% |
| ! | TGAATCTTCTTTGTATGAAT+AGG | + | Chr4:17563438-17563457 | None:intergenic | 25.0% |
| ! | TTCATTAATTGAGAGAAACA+TGG | - | Chr4:17563487-17563506 | MsG0480019274.01.T01:CDS | 25.0% |
| ! | TTGCTTATGTCTATATTGAT+CGG | - | Chr4:17563666-17563685 | MsG0480019274.01.T01:intron | 25.0% |
| !! | AAATCATAGTGTAGTTTTCT+TGG | + | Chr4:17563410-17563429 | None:intergenic | 25.0% |
| !! | AATGTATCTCTTTTAATCTG+AGG | + | Chr4:17564041-17564060 | None:intergenic | 25.0% |
| !! | TTCTAAACCCAAGATTATTT+TGG | + | Chr4:17563697-17563716 | None:intergenic | 25.0% |
| !!! | ATTTTAATGGTAGAGAATCT+AGG | + | Chr4:17564183-17564202 | None:intergenic | 25.0% |
| !!! | TTTTTTGTCAAAATCTCCAA+TGG | + | Chr4:17564309-17564328 | None:intergenic | 25.0% |
| AATTATATTGCCTCAAAGCA+TGG | - | Chr4:17563943-17563962 | MsG0480019274.01.T01:intron | 30.0% | |
| ACGGACATTAATTGCATTAA+TGG | - | Chr4:17564088-17564107 | MsG0480019274.01.T01:intron | 30.0% | |
| AGTGAAGACCAGAAAAATAT+TGG | + | Chr4:17563993-17564012 | None:intergenic | 30.0% | |
| CAAGGTAACAATTTGGTAAA+GGG | - | Chr4:17563875-17563894 | MsG0480019274.01.T01:intron | 30.0% | |
| GCTAGAACATTTATCACTAA+TGG | + | Chr4:17563467-17563486 | None:intergenic | 30.0% | |
| GTGAAGACCAGAAAAATATT+GGG | + | Chr4:17563992-17564011 | None:intergenic | 30.0% | |
| TCAAGGTAACAATTTGGTAA+AGG | - | Chr4:17563874-17563893 | MsG0480019274.01.T01:intron | 30.0% | |
| TGAAGACCAGAAAAATATTG+GGG | + | Chr4:17563991-17564010 | None:intergenic | 30.0% | |
| ! | AAAGATTTTTGTGCTTGCTT+TGG | + | Chr4:17563558-17563577 | None:intergenic | 30.0% |
| ! | CTCTTTTAATCTGAGGATTA+CGG | + | Chr4:17564034-17564053 | None:intergenic | 30.0% |
| ! | GGTTTTGCCAAAATAATCTT+GGG | - | Chr4:17563687-17563706 | MsG0480019274.01.T01:intron | 30.0% |
| !! | AACTATCATTTTGACCGAAA+GGG | - | Chr4:17564281-17564300 | MsG0480019274.01.T01:CDS | 30.0% |
| !! | TAACTATCATTTTGACCGAA+AGG | - | Chr4:17564280-17564299 | MsG0480019274.01.T01:CDS | 30.0% |
| CTCTTTAATCTGACGGTTTA+CGG | - | Chr4:17564069-17564088 | MsG0480019274.01.T01:intron | 35.0% | |
| GCTGAAGAAATCAAAGAAAG+AGG | - | Chr4:17564601-17564620 | MsG0480019274.01.T01:CDS | 35.0% | |
| GGCATAAAGTGATACTAAAG+TGG | - | Chr4:17564364-17564383 | MsG0480019274.01.T01:CDS | 35.0% | |
| TAAGCAACAACATAAACCGA+AGG | + | Chr4:17563653-17563672 | None:intergenic | 35.0% | |
| TCATACTTTGCAAAAGTTGG+TGG | - | Chr4:17564418-17564437 | MsG0480019274.01.T01:CDS | 35.0% | |
| ! | CGGTTTTGCCAAAATAATCT+TGG | - | Chr4:17563686-17563705 | MsG0480019274.01.T01:intron | 35.0% |
| ! | GGTAAAGGGTTTGTCAATTT+TGG | - | Chr4:17563889-17563908 | MsG0480019274.01.T01:intron | 35.0% |
| ! | TTGGATCCCCAATATTTTTC+TGG | - | Chr4:17563982-17564001 | MsG0480019274.01.T01:intron | 35.0% |
| !! | ATTTTTAGATACACACGTGC+TGG | - | Chr4:17563626-17563645 | MsG0480019274.01.T01:intron | 35.0% |
| !!! | TAAAGTGGCTGCTTTTTATC+TGG | - | Chr4:17564379-17564398 | MsG0480019274.01.T01:CDS | 35.0% |
| CTATTGTTCCCATTTGGAGA+GGG | - | Chr4:17564531-17564550 | MsG0480019274.01.T01:CDS | 40.0% | |
| GATTTCTTCAGCACACCTTA+AGG | + | Chr4:17564593-17564612 | None:intergenic | 40.0% | |
| TGAGAGCTATTGTTCCCATT+TGG | - | Chr4:17564525-17564544 | MsG0480019274.01.T01:CDS | 40.0% | |
| AATCTCCAATGGAGCCCTTT+CGG | + | Chr4:17564298-17564317 | None:intergenic | 45.0% | |
| ACCACATTGAGAGGACCTTA+AGG | - | Chr4:17564575-17564594 | MsG0480019274.01.T01:CDS | 45.0% | |
| ACCTTAAGGTCCTCTCAATG+TGG | + | Chr4:17564579-17564598 | None:intergenic | 45.0% | |
| GCTATTGTTCCCATTTGGAG+AGG | - | Chr4:17564530-17564549 | MsG0480019274.01.T01:CDS | 45.0% | |
| GCTTACTTCCCTCTCCAAAT+GGG | + | Chr4:17564542-17564561 | None:intergenic | 45.0% | |
| TATTGGGGATCCAACATGCA+TGG | + | Chr4:17563976-17563995 | None:intergenic | 45.0% | |
| TGCTTACTTCCCTCTCCAAA+TGG | + | Chr4:17564543-17564562 | None:intergenic | 45.0% | |
| TTGGAGAGGGAAGTAAGCAT+TGG | - | Chr4:17564544-17564563 | MsG0480019274.01.T01:CDS | 45.0% | |
| ATACACACGTGCTGGACCTT+CGG | - | Chr4:17563634-17563653 | MsG0480019274.01.T01:intron | 50.0% | |
| GATCCAACATGCATGGCCAT+TGG | + | Chr4:17563969-17563988 | None:intergenic | 50.0% | |
| TTGCCTCAAAGCATGGCCAA+TGG | - | Chr4:17563950-17563969 | MsG0480019274.01.T01:intron | 50.0% | |
| TTTGACCGAAAGGGCTCCAT+TGG | - | Chr4:17564290-17564309 | MsG0480019274.01.T01:CDS | 50.0% | |
| !! | AGGGAAGTAAGCATTGGAGG+AGG | - | Chr4:17564550-17564569 | MsG0480019274.01.T01:CDS | 50.0% |
| !! | GAGAGGGAAGTAAGCATTGG+AGG | - | Chr4:17564547-17564566 | MsG0480019274.01.T01:CDS | 50.0% |
| !! | GGGAAGTAAGCATTGGAGGA+GGG | - | Chr4:17564551-17564570 | MsG0480019274.01.T01:CDS | 50.0% |
| !!! | GTGGCTGCTTTTTATCTGGC+AGG | - | Chr4:17564383-17564402 | MsG0480019274.01.T01:CDS | 50.0% |
| TGGCCAATGGCCATGCATGT+TGG | - | Chr4:17563963-17563982 | MsG0480019274.01.T01:intron | 55.0% | |
| TGGCCATTGGCCATGCTTTG+AGG | + | Chr4:17563956-17563975 | None:intergenic | 55.0% | |
| !! | GAGGAGGGTACCACATTGAG+AGG | - | Chr4:17564566-17564585 | MsG0480019274.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 17563380 | 17564654 | 17563380 | ID=MsG0480019274.01;Name=MsG0480019274.01 |
| Chr4 | mRNA | 17563380 | 17564654 | 17563380 | ID=MsG0480019274.01.T01;Parent=MsG0480019274.01;Name=MsG0480019274.01.T01;_AED=0.32;_eAED=0.32;_QI=0|0|0|1|0|0|2|0|218 |
| Chr4 | exon | 17564248 | 17564654 | 17564248 | ID=MsG0480019274.01.T01:exon:4595;Parent=MsG0480019274.01.T01 |
| Chr4 | CDS | 17564248 | 17564654 | 17564248 | ID=MsG0480019274.01.T01:cds;Parent=MsG0480019274.01.T01 |
| Chr4 | CDS | 17563380 | 17563629 | 17563380 | ID=MsG0480019274.01.T01:cds;Parent=MsG0480019274.01.T01 |
| Chr4 | mRNA | 17563380 | 17564528 | 17563380 | ID=MsG0480019274.01.T02;Parent=MsG0480019274.01;Name=MsG0480019274.01.T02;_AED=0.35;_eAED=0.36;_QI=0|0|0|1|0|0|2|0|176 |
| Chr4 | exon | 17564248 | 17564528 | 17564248 | ID=MsG0480019274.01.T02:exon:4597;Parent=MsG0480019274.01.T02 |
| Chr4 | CDS | 17564248 | 17564528 | 17564248 | ID=MsG0480019274.01.T02:cds;Parent=MsG0480019274.01.T02 |
| Chr4 | CDS | 17563380 | 17563629 | 17563380 | ID=MsG0480019274.01.T02:cds;Parent=MsG0480019274.01.T02 |
| Chr4 | mRNA | 17563380 | 17564276 | 17563380 | ID=MsG0480019274.01.T03;Parent=MsG0480019274.01;Name=MsG0480019274.01.T03;_AED=0.42;_eAED=0.43;_QI=0|0|0|1|0|0|2|0|92 |
| Chr4 | exon | 17564248 | 17564276 | 17564248 | ID=MsG0480019274.01.T03:exon:4598;Parent=MsG0480019274.01.T03 |
| Chr4 | CDS | 17564248 | 17564276 | 17564248 | ID=MsG0480019274.01.T03:cds;Parent=MsG0480019274.01.T03 |
| Chr4 | CDS | 17563380 | 17563629 | 17563380 | ID=MsG0480019274.01.T03:cds;Parent=MsG0480019274.01.T03 |
| Chr4 | mRNA | 17563380 | 17563646 | 17563380 | ID=MsG0480019274.01.T04;Parent=MsG0480019274.01;Name=MsG0480019274.01.T04;_AED=0.43;_eAED=0.43;_QI=0|-1|0|1|-1|0|1|0|88 |
| Chr4 | exon | 17563380 | 17563646 | 17563380 | ID=MsG0480019274.01.T04:exon:4599;Parent=MsG0480019274.01.T04 |
| Chr4 | CDS | 17563380 | 17563646 | 17563380 | ID=MsG0480019274.01.T04:cds;Parent=MsG0480019274.01.T04 |
| Chr4 | mRNA | 17564285 | 17564374 | 17564285 | ID=MsG0480019274.01.T05;Parent=MsG0480019274.01;Name=MsG0480019274.01.T05;_AED=0.47;_eAED=0.47;_QI=0|-1|0|1|-1|0|1|0|29 |
| Chr4 | exon | 17564285 | 17564374 | 17564285 | ID=MsG0480019274.01.T05:exon:4600;Parent=MsG0480019274.01.T05 |
| Chr4 | CDS | 17564285 | 17564374 | 17564285 | ID=MsG0480019274.01.T05:cds;Parent=MsG0480019274.01.T05 |
| Gene Sequence |
| Protein sequence |
