AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025746.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025746.01.T01 MTR_5g033920 99.764 423 1 0 1 423 1 423 0.0 866
MsG0580025746.01.T01 MTR_5g033920 98.140 430 1 1 1 423 1 430 0.0 857
MsG0580025746.01.T01 MTR_2g062920 91.726 423 35 0 1 423 1 423 0.0 801
MsG0580025746.01.T01 MTR_2g062920 92.562 363 27 0 61 423 1 363 0.0 694
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025746.01.T01 AT1G10670 88.180 423 50 0 1 423 1 423 0.0 781
MsG0580025746.01.T01 AT1G10670 88.180 423 50 0 1 423 1 423 0.0 781
MsG0580025746.01.T01 AT1G10670 88.180 423 50 0 1 423 1 423 0.0 781
MsG0580025746.01.T01 AT1G60810 87.234 423 54 0 1 423 1 423 0.0 776
MsG0580025746.01.T01 AT1G60810 87.234 423 54 0 1 423 1 423 0.0 776
MsG0580025746.01.T01 AT1G10670 84.199 443 50 1 1 423 1 443 0.0 767
MsG0580025746.01.T01 AT1G09430 81.862 419 76 0 1 419 1 419 0.0 736

Find 122 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATCTTTGTTACAGGTTTA+TGG 0.135148 5:-23668415 MsG0580025746.01.T01:intron
GAGCACTTTAAGAGACTTTC+TGG 0.142923 5:-23672720 MsG0580025746.01.T01:CDS
GTGAAACCTGACATGTTATT+TGG 0.166150 5:-23671809 MsG0580025746.01.T01:CDS
ATGGCTTTCTTCTTCTAAAT+TGG 0.172223 5:-23671834 MsG0580025746.01.T01:CDS
TCCGCTTAACTATCCATTTC+AGG 0.197287 5:-23668337 MsG0580025746.01.T01:exon
TTTCCATCAACCAATGTAAA+AGG 0.245174 5:+23670861 None:intergenic
TTAATTTCCTTTCCCGTTCC+TGG 0.255198 5:-23668254 MsG0580025746.01.T01:three_prime_UTR
GCCACTGAGTCTTTCATTCA+TGG 0.261851 5:-23670623 MsG0580025746.01.T01:CDS
TGGTTTGGTTGCCTTGAATT+TGG 0.268556 5:-23671771 MsG0580025746.01.T01:CDS
TGAACCCAAAGGGCCGAATT+TGG 0.281078 5:-23669741 MsG0580025746.01.T01:CDS
CGAATTTGGACAATGGTTGC+TGG 0.300252 5:-23669727 MsG0580025746.01.T01:CDS
GAATCGATATTGAAGAGAAT+TGG 0.314663 5:-23671425 MsG0580025746.01.T01:CDS
ATTGAAAATATAGGTTGAAA+TGG 0.324243 5:-23671571 MsG0580025746.01.T01:intron
TTCAATTAGCTAACCTCAAT+CGG 0.325607 5:+23668526 None:intergenic
GATCCAGGAATCAAAGTTAA+AGG 0.325987 5:-23668641 MsG0580025746.01.T01:intron
CGAGCACTTGGAGAGGAAAT+TGG 0.328982 5:-23668553 MsG0580025746.01.T01:CDS
GGTTGCCTTGAATTTGGATT+TGG 0.332415 5:-23671765 MsG0580025746.01.T01:CDS
TTGTCCAAATTCGGCCCTTT+GGG 0.337602 5:+23669737 None:intergenic
TTAATACAGGTAGGCGATCT+TGG 0.342068 5:-23669585 MsG0580025746.01.T01:intron
ATTGTCCAAATTCGGCCCTT+TGG 0.347305 5:+23669736 None:intergenic
AAGAAAGCATTAACCTGAAA+TGG 0.350004 5:+23668324 None:intergenic
ATACCAGTCATTGTTGCTTC+AGG 0.359407 5:+23668391 None:intergenic
CTGCAAAACCTCCTCTTCAT+TGG 0.362473 5:+23669518 None:intergenic
TGATGGAAAGCCTTATCCTT+TGG 0.370162 5:-23670847 MsG0580025746.01.T01:CDS
CAGCAACCATTGTCCAAATT+CGG 0.373694 5:+23669728 None:intergenic
CTTACTTGTGCAGACTTGAT+AGG 0.377362 5:+23672687 None:intergenic
ACTTGTTGCAACCCTTCCCT+TGG 0.384681 5:-23671231 MsG0580025746.01.T01:CDS
CTTGGCTTTGCAAATGAGCT+TGG 0.386907 5:-23669567 MsG0580025746.01.T01:CDS
TTGAAAATATAGGTTGAAAT+GGG 0.391559 5:-23671570 MsG0580025746.01.T01:intron
AATCGATATTGAAGAGAATT+GGG 0.403789 5:-23671424 MsG0580025746.01.T01:CDS
CTTTCACAAATGAAGCAACT+TGG 0.406529 5:+23671741 None:intergenic
AAATAAAATGATGAGGTTGT+TGG 0.407457 5:+23673208 None:intergenic
TAACAAAATTTACAAATTCC+AGG 0.417390 5:+23668236 None:intergenic
AGGTAATACTCTTCATTATG+TGG 0.426783 5:+23671501 None:intergenic
ATTGAATTTCCATTGCCATT+TGG 0.427635 5:-23670659 MsG0580025746.01.T01:CDS
TCAACAATGAAAGTTGTTAT+CGG 0.431360 5:+23671534 None:intergenic
TGAAACCTGACATGTTATTT+GGG 0.440993 5:-23671808 MsG0580025746.01.T01:CDS
GAATTGATGAACGAACGATT+TGG 0.443396 5:+23673108 None:intergenic
AAGTTTGAAGTGAACGTTGA+TGG 0.443711 5:-23668284 MsG0580025746.01.T01:three_prime_UTR
AATTTACAAATTCCAGGAAC+GGG 0.450031 5:+23668242 None:intergenic
CGCTTCCCAAATAACATGTC+AGG 0.451633 5:+23671803 None:intergenic
AATAAAATGATGAGGTTGTT+GGG 0.452215 5:+23673209 None:intergenic
GTTTGGAGAGAAAGAAAAGA+AGG 0.453471 5:+23673184 None:intergenic
ATAGATCAAGGGAGAAATTG+AGG 0.459317 5:-23671087 MsG0580025746.01.T01:intron
CATTCATGGATTAGATGAAA+AGG 0.460623 5:-23670609 MsG0580025746.01.T01:intron
TGTTGCAACCCTTCCCTTGG+AGG 0.460679 5:-23671228 MsG0580025746.01.T01:intron
TGGCATAATTCGGGCACTAA+AGG 0.461705 5:-23668752 MsG0580025746.01.T01:CDS
TGCAAAACCTCCTCTTCATT+GGG 0.463887 5:+23669519 None:intergenic
GAATTTGGACAATGGTTGCT+GGG 0.465292 5:-23669726 MsG0580025746.01.T01:CDS
TTTGGGAAGCGTGGTAAAAG+TGG 0.468444 5:-23671791 MsG0580025746.01.T01:CDS
AACCTCATCCATCCTCCTTC+CGG 0.471441 5:-23673063 MsG0580025746.01.T01:intron
TGATTCTAAGAGATTGTTGA+AGG 0.478842 5:-23672742 MsG0580025746.01.T01:CDS
TAAATTGAATTTACCTCCAA+GGG 0.486977 5:+23671215 None:intergenic
AATGACTGGTATATGCAAAC+AGG 0.488870 5:-23668380 MsG0580025746.01.T01:CDS
GGGAATTACCGGAAGGAGGA+TGG 0.489398 5:+23673055 None:intergenic
AATTTCCATTGCCATTTGGA+AGG 0.489649 5:-23670655 MsG0580025746.01.T01:CDS
CCTCTCATATCCAAAGGATA+AGG 0.491900 5:+23670837 None:intergenic
TGTTGGGTTGGTGAAGATGA+TGG 0.496535 5:+23673225 None:intergenic
ACTTACATCAATTACAACTC+TGG 0.505750 5:+23669491 None:intergenic
TTGGGCCAAATCCAAATTCA+AGG 0.506250 5:+23671760 None:intergenic
TTCACTGTGTTGAACCCAAA+GGG 0.510313 5:-23669751 MsG0580025746.01.T01:CDS
GGAAATTGGCATCCCGATTG+AGG 0.511227 5:-23668539 MsG0580025746.01.T01:intron
GTCTGTCAGAGACAATGTTA+AGG 0.515654 5:+23671481 None:intergenic
GGAAACTATGCAGAATATAG+TGG 0.517156 5:-23669546 MsG0580025746.01.T01:CDS
GAAGCGTGGTAAAAGTGGTT+TGG 0.519204 5:-23671786 MsG0580025746.01.T01:CDS
TCAATTAGCTAACCTCAATC+GGG 0.519937 5:+23668527 None:intergenic
TCTTCATTATGTGGGATGAA+AGG 0.519980 5:+23671510 None:intergenic
TTAAATTGAATTTACCTCCA+AGG 0.523717 5:+23671214 None:intergenic
TATTGAAGAGAATTGGGATA+AGG 0.523886 5:-23671418 MsG0580025746.01.T01:intron
TTGAATTTACCTCCAAGGGA+AGG 0.525190 5:+23671219 None:intergenic
AGGGAAGGGTTGCAACAAGT+GGG 0.528893 5:+23671234 None:intergenic
GGTTGAAATGGGTGGATGCA+AGG 0.529860 5:-23671559 MsG0580025746.01.T01:CDS
TTTCACAAATGAAGCAACTT+GGG 0.530236 5:+23671742 None:intergenic
GGTAATACTCTTCATTATGT+GGG 0.530693 5:+23671502 None:intergenic
AACATTGTCTCTGACAGACT+TGG 0.532898 5:-23671477 MsG0580025746.01.T01:CDS
GAAAGAGCGTCTTGGTAAAG+AGG 0.535308 5:-23671723 MsG0580025746.01.T01:intron
TGCACCTTTATGTGAGGCGA+GGG 0.535874 5:-23668609 MsG0580025746.01.T01:CDS
TGAATTTACCTCCAAGGGAA+GGG 0.537577 5:+23671220 None:intergenic
GGACCTGAAGCAACAATGAC+TGG 0.541528 5:-23668394 MsG0580025746.01.T01:CDS
AAGGGAAGGGTTGCAACAAG+TGG 0.542096 5:+23671233 None:intergenic
AGGGCTCTTGTTATAGGTGG+AGG 0.545602 5:-23668811 MsG0580025746.01.T01:CDS
ACAAATTCCAGGAACGGGAA+AGG 0.550902 5:+23668247 None:intergenic
AAATGATGAGGTTGTTGGGT+TGG 0.553057 5:+23673213 None:intergenic
TAGTGTCATCTACGCTGATA+CGG 0.554753 5:-23669695 MsG0580025746.01.T01:intron
GCACTCATAACCCTTCCAAA+TGG 0.556781 5:+23670644 None:intergenic
TACCGGAAGGAGGATGGATG+AGG 0.557016 5:+23673061 None:intergenic
ATTTCCATTGCCATTTGGAA+GGG 0.562037 5:-23670654 MsG0580025746.01.T01:CDS
GTTGAAATGGGTGGATGCAA+GGG 0.564098 5:-23671558 MsG0580025746.01.T01:CDS
AAATTTACAAATTCCAGGAA+CGG 0.566479 5:+23668241 None:intergenic
TCATTTGTGAAAGAGCGTCT+TGG 0.569120 5:-23671731 MsG0580025746.01.T01:CDS
AGAAATTGAGGAATTTCTCA+AGG 0.569980 5:-23671075 MsG0580025746.01.T01:CDS
ATAACCCTTCCAAATGGCAA+TGG 0.584751 5:+23670650 None:intergenic
AAAAGGGCTCTTGTTATAGG+TGG 0.587346 5:-23668814 MsG0580025746.01.T01:CDS
AAAATATAGGTTGAAATGGG+TGG 0.588383 5:-23671567 MsG0580025746.01.T01:intron
ACCTGAAATGGATAGTTAAG+CGG 0.591889 5:+23668336 None:intergenic
CCTTATCCTTTGGATATGAG+AGG 0.593802 5:-23670837 MsG0580025746.01.T01:CDS
AGGTTGGTGAGATGAGTGGT+TGG 0.600006 5:+23673081 None:intergenic
TGTGCAACTGCCGACCCCGA+TGG 0.600634 5:-23668841 MsG0580025746.01.T01:CDS
AGCTCGCCTCTCATATCCAA+AGG 0.606308 5:+23670831 None:intergenic
ATCTGGGAATTACCGGAAGG+AGG 0.607069 5:+23673051 None:intergenic
GGGAAGGGTTGCAACAAGTG+GGG 0.607919 5:+23671235 None:intergenic
CTTTAAGAGACTTTCTGGCA+AGG 0.607933 5:-23672715 MsG0580025746.01.T01:CDS
AATTCGGGCACTAAAGGAGA+AGG 0.611871 5:-23668746 MsG0580025746.01.T01:intron
CACCTTTATGTGAGGCGAGG+GGG 0.612540 5:-23668607 MsG0580025746.01.T01:CDS
AATTTGGACAATGGTTGCTG+GGG 0.612808 5:-23669725 MsG0580025746.01.T01:CDS
TTTCACTGAGCTGCAAGACA+AGG 0.614695 5:-23671861 MsG0580025746.01.T01:CDS
TAGTGGTGCACCCAATGAAG+AGG 0.615153 5:-23669529 MsG0580025746.01.T01:CDS
ATGCACCTTTATGTGAGGCG+AGG 0.615319 5:-23668610 MsG0580025746.01.T01:CDS
AGCTGCAAGACAAGGAACAA+TGG 0.615951 5:-23671853 MsG0580025746.01.T01:CDS
AAAGGGCCGAATTTGGACAA+TGG 0.617352 5:-23669734 MsG0580025746.01.T01:CDS
AGAAGGAAAATAAAATGATG+AGG 0.617373 5:+23673201 None:intergenic
GGAAGGAGGATGGATGAGGT+TGG 0.622210 5:+23673065 None:intergenic
GATGTAAGAGACACTCCCGT+TGG 0.624325 5:+23671269 None:intergenic
ATTTGGACAATGGTTGCTGG+GGG 0.626405 5:-23669724 MsG0580025746.01.T01:CDS
GATGAGGTTGGTGAGATGAG+TGG 0.627305 5:+23673077 None:intergenic
GACATGTTATTTGGGAAGCG+TGG 0.630841 5:-23671800 MsG0580025746.01.T01:CDS
TGGTGCACCCAATGAAGAGG+AGG 0.642713 5:-23669526 MsG0580025746.01.T01:CDS
CAAGAATGCACCTTTATGTG+AGG 0.651491 5:-23668615 MsG0580025746.01.T01:CDS
ATTCACTGTGTTGAACCCAA+AGG 0.654553 5:-23669752 MsG0580025746.01.T01:CDS
GCACCTTTATGTGAGGCGAG+GGG 0.663860 5:-23668608 MsG0580025746.01.T01:CDS
TTGCAGCTCAGTGAAATCAG+TGG 0.670844 5:+23671868 None:intergenic
TCCATGAATGAAAGACTCAG+TGG 0.707219 5:+23670622 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAATCTTTAAATTGAT+AGG + Chr5:23671907-23671926 None:intergenic 10.0%
!! TCAATTTAAAGATTTAATTA+TGG - Chr5:23671908-23671927 MsG0580025746.01.T01:intron 10.0%
!!! TTGAATTTTTTTTTATTGTT+TGG + Chr5:23668178-23668197 None:intergenic 10.0%
!! AAATATTAATTAATACAGGT+AGG - Chr5:23671748-23671767 MsG0580025746.01.T01:CDS 15.0%
!! TGCTAAATATTAATTAATAC+AGG - Chr5:23671744-23671763 MsG0580025746.01.T01:CDS 15.0%
!! TTGAATAAAATTGTACATTT+AGG + Chr5:23670778-23670797 None:intergenic 15.0%
!!! AATTTTAGATTAAGAAGAAA+TGG - Chr5:23668555-23668574 MsG0580025746.01.T01:CDS 15.0%
!!! ATTTTCACAGAAAAATTATA+TGG - Chr5:23668426-23668445 MsG0580025746.01.T01:intron 15.0%
!!! TTTATTTTGAACTTATCTTA+TGG + Chr5:23669314-23669333 None:intergenic 15.0%
!!! TTTTCACAGAAAAATTATAT+GGG - Chr5:23668427-23668446 MsG0580025746.01.T01:intron 15.0%
!!! TTTTGTGATAAATTTTTAAG+TGG - Chr5:23668778-23668797 MsG0580025746.01.T01:CDS 15.0%
!! AAAATATATCAATGGTTGAA+AGG + Chr5:23669739-23669758 None:intergenic 20.0%
!! AAATATATCAATGGTTGAAA+GGG + Chr5:23669738-23669757 None:intergenic 20.0%
!! AAATTGGTCCAATAAATTAT+TGG + Chr5:23672176-23672195 None:intergenic 20.0%
!! AAGGTAAACTAATATAACTT+TGG - Chr5:23670752-23670771 MsG0580025746.01.T01:intron 20.0%
!! AATCTTAAAAGAAAACAGTA+CGG + Chr5:23670397-23670416 None:intergenic 20.0%
!! AATTGAAAAATGAAAGAAAG+TGG + Chr5:23668318-23668337 None:intergenic 20.0%
!! ACAAAAAATATGTACTTAAC+AGG + Chr5:23670840-23670859 None:intergenic 20.0%
!! ATAAGCTGAAAAATATCTTA+TGG - Chr5:23669218-23669237 MsG0580025746.01.T01:intron 20.0%
!! ATCAAAACTAAGATCAAAAT+TGG + Chr5:23668372-23668391 None:intergenic 20.0%
!! ATTGAAAAATGAAAGAAAGT+GGG + Chr5:23668317-23668336 None:intergenic 20.0%
!! GTGTTATAAGTTAGTTAATT+TGG + Chr5:23672224-23672243 None:intergenic 20.0%
!! TAACAAAATTTACAAATTCC+AGG + Chr5:23673109-23673128 None:intergenic 20.0%
!! TAAGCTGAAAAATATCTTAT+GGG - Chr5:23669219-23669238 MsG0580025746.01.T01:intron 20.0%
!! TTAATATGCAATTTCATACA+GGG + Chr5:23668465-23668484 None:intergenic 20.0%
!! TTGTTCAATACTGTAAATAA+AGG + Chr5:23672849-23672868 None:intergenic 20.0%
!! TTGTTCGTAAAATAACAAAT+TGG + Chr5:23670157-23670176 None:intergenic 20.0%
!! TTTAATATGCAATTTCATAC+AGG + Chr5:23668466-23668485 None:intergenic 20.0%
!! TTTCACAGAAAAATTATATG+GGG - Chr5:23668428-23668447 MsG0580025746.01.T01:intron 20.0%
!!! AATGTTATGTGTTATTTTGA+AGG - Chr5:23670584-23670603 MsG0580025746.01.T01:intron 20.0%
!!! AGCAGTTTATTAATTCTTTT+TGG - Chr5:23672904-23672923 MsG0580025746.01.T01:intron 20.0%
!!! ATATCACTTTTACTTAAAGT+AGG - Chr5:23669045-23669064 MsG0580025746.01.T01:intron 20.0%
!!! ATCTTTTGCCAATAATTTAT+TGG - Chr5:23672165-23672184 MsG0580025746.01.T01:intron 20.0%
!!! ATTGAAAATATAGGTTGAAA+TGG - Chr5:23669771-23669790 MsG0580025746.01.T01:CDS 20.0%
!!! GCTATTTCTTAAATTATTAC+TGG - Chr5:23671444-23671463 MsG0580025746.01.T01:CDS 20.0%
!!! GTTTTTTTAACTTCTTACTT+GGG - Chr5:23670858-23670877 MsG0580025746.01.T01:CDS 20.0%
!!! TGTTTTTTTAACTTCTTACT+TGG - Chr5:23670857-23670876 MsG0580025746.01.T01:CDS 20.0%
!!! TTCACGACAATTTTTTTAAA+TGG + Chr5:23668922-23668941 None:intergenic 20.0%
!!! TTGAAAATATAGGTTGAAAT+GGG - Chr5:23669772-23669791 MsG0580025746.01.T01:CDS 20.0%
!!! TTGTAATTTTGGTTAATTCA+GGG - Chr5:23672302-23672321 MsG0580025746.01.T01:intron 20.0%
!!! TTTCATTGTCTTCATTTTAT+GGG + Chr5:23671039-23671058 None:intergenic 20.0%
!!! TTTGTAATTTTGGTTAATTC+AGG - Chr5:23672301-23672320 MsG0580025746.01.T01:intron 20.0%
!!! TTTTTTTAACTTCTTACTTG+GGG - Chr5:23670859-23670878 MsG0580025746.01.T01:CDS 20.0%
! AAATAAAATGATGAGGTTGT+TGG + Chr5:23668137-23668156 None:intergenic 25.0%
! AAATTTACAAATTCCAGGAA+CGG + Chr5:23673104-23673123 None:intergenic 25.0%
! AATAAAATGATGAGGTTGTT+GGG + Chr5:23668136-23668155 None:intergenic 25.0%
! AATCGATATTGAAGAGAATT+GGG - Chr5:23669918-23669937 MsG0580025746.01.T01:intron 25.0%
! AATGTAAGACAATGAATGTA+AGG + Chr5:23669683-23669702 None:intergenic 25.0%
! ACAGAGAATGAAATGATAAT+CGG - Chr5:23671114-23671133 MsG0580025746.01.T01:intron 25.0%
! ACGTGACTAAAATATATCAA+TGG + Chr5:23669747-23669766 None:intergenic 25.0%
! AGAAGGAAAATAAAATGATG+AGG + Chr5:23668144-23668163 None:intergenic 25.0%
! ATATCTTTGTTACAGGTTTA+TGG - Chr5:23672927-23672946 MsG0580025746.01.T01:intron 25.0%
! ATTATCCATAACCTTCAAAT+TGG - Chr5:23670016-23670035 MsG0580025746.01.T01:intron 25.0%
! CACGTGTTTATTGAAAATAT+AGG - Chr5:23669762-23669781 MsG0580025746.01.T01:CDS 25.0%
! GTTAATTATGTCCGAATTTA+TGG - Chr5:23668822-23668841 MsG0580025746.01.T01:CDS 25.0%
! TAAATTGAATTTACCTCCAA+GGG + Chr5:23670130-23670149 None:intergenic 25.0%
! TAATAGGAAAAATTGTGTTG+AGG - Chr5:23672881-23672900 MsG0580025746.01.T01:intron 25.0%
! TCAACAATGAAAGTTGTTAT+CGG + Chr5:23669811-23669830 None:intergenic 25.0%
! TCTTGTTAGTTCATACTAAT+GGG - Chr5:23670609-23670628 MsG0580025746.01.T01:intron 25.0%
! TTAAATTGAATTTACCTCCA+AGG + Chr5:23670131-23670150 None:intergenic 25.0%
! TTGCATATTAAATAGTAGTG+AGG - Chr5:23668474-23668493 MsG0580025746.01.T01:intron 25.0%
!! AATAGAGTAAACACTCATTT+TGG + Chr5:23672364-23672383 None:intergenic 25.0%
!! CCATTAAGCTAATTTGAAAT+GGG - Chr5:23668395-23668414 MsG0580025746.01.T01:CDS 25.0%
!! CCATTTCAAATTAGCTTAAT+GGG + Chr5:23668397-23668416 None:intergenic 25.0%
!! GTAGGAGTAAACAATAATTT+TGG - Chr5:23672066-23672085 MsG0580025746.01.T01:intron 25.0%
!! GTGTAATTTAAAATGTTGCA+AGG - Chr5:23670921-23670940 MsG0580025746.01.T01:intron 25.0%
!! GTTTCATTGTCTTCATTTTA+TGG + Chr5:23671040-23671059 None:intergenic 25.0%
!! TAAGAGAAAATTTTATGTGC+AGG + Chr5:23669997-23670016 None:intergenic 25.0%
!! TACAGTATTGAACAATCAAA+TGG - Chr5:23672854-23672873 MsG0580025746.01.T01:intron 25.0%
!! TCAGTTTTTGTAGAATTTGA+TGG - Chr5:23673183-23673202 MsG0580025746.01.T01:five_prime_UTR 25.0%
!! TGATGTCTCTAAAAAACTAT+AGG - Chr5:23671958-23671977 MsG0580025746.01.T01:intron 25.0%
!! TTTTACGAACAAACTAACTT+TGG - Chr5:23670165-23670184 MsG0580025746.01.T01:intron 25.0%
!! TTTTTGGATATCTTTGTTAC+AGG - Chr5:23672920-23672939 MsG0580025746.01.T01:intron 25.0%
!!! CTTGAGTATTGAATTTGTTT+TGG - Chr5:23669428-23669447 MsG0580025746.01.T01:intron 25.0%
!!! GCTTATTGATTTCTGAAAAA+TGG + Chr5:23669366-23669385 None:intergenic 25.0%
!!! TAAGACTGTTTTTATTCCAA+CGG - Chr5:23670057-23670076 MsG0580025746.01.T01:intron 25.0%
!!! TTTTTTAACTTCTTACTTGG+GGG - Chr5:23670860-23670879 MsG0580025746.01.T01:CDS 25.0%
AAGTAAAACTCTACTGTTGT+GGG + Chr5:23672626-23672645 None:intergenic 30.0%
AATTTACAAATTCCAGGAAC+GGG + Chr5:23673103-23673122 None:intergenic 30.0%
ACAATCAAATGGTGCTTAAT+AGG - Chr5:23672865-23672884 MsG0580025746.01.T01:intron 30.0%
ACAATGAATGTAAGGTTTGA+AGG + Chr5:23669675-23669694 None:intergenic 30.0%
ACTTACATCAATTACAACTC+TGG + Chr5:23671854-23671873 None:intergenic 30.0%
AGAAATTGAGGAATTTCTCA+AGG - Chr5:23670267-23670286 MsG0580025746.01.T01:intron 30.0%
AGCATATTAAGCACAATGTA+TGG + Chr5:23669273-23669292 None:intergenic 30.0%
AGGTAATACTCTTCATTATG+TGG + Chr5:23669844-23669863 None:intergenic 30.0%
ATATGACCAAACCAATTTGA+AGG + Chr5:23670030-23670049 None:intergenic 30.0%
ATCTTCCCTAACCATAAATT+CGG + Chr5:23668836-23668855 None:intergenic 30.0%
ATGGCTTTCTTCTTCTAAAT+TGG - Chr5:23669508-23669527 MsG0580025746.01.T01:CDS 30.0%
ATTGAATGCAACTACATGTT+TGG + Chr5:23671420-23671439 None:intergenic 30.0%
ATTGAATTTCCATTGCCATT+TGG - Chr5:23670683-23670702 MsG0580025746.01.T01:intron 30.0%
ATTGGCAAAAGATATACTCA+AGG + Chr5:23672158-23672177 None:intergenic 30.0%
CCCATTAAGCTAATTTGAAA+TGG - Chr5:23668394-23668413 MsG0580025746.01.T01:CDS 30.0%
CGTGTATGCAAGTTTAATAA+AGG - Chr5:23669339-23669358 MsG0580025746.01.T01:intron 30.0%
GAATCGATATTGAAGAGAAT+TGG - Chr5:23669917-23669936 MsG0580025746.01.T01:intron 30.0%
GGTAATACTCTTCATTATGT+GGG + Chr5:23669843-23669862 None:intergenic 30.0%
GTAGAAAGAACACAATTGAT+TGG - Chr5:23668960-23668979 MsG0580025746.01.T01:intron 30.0%
TAACATATCCTAGAAGAAAG+TGG + Chr5:23671313-23671332 None:intergenic 30.0%
TAAGTAAAACTCTACTGTTG+TGG + Chr5:23672627-23672646 None:intergenic 30.0%
TACTACAATGGACATATTCA+AGG - Chr5:23672260-23672279 MsG0580025746.01.T01:intron 30.0%
TATGTCCGAATTTATGGTTA+GGG - Chr5:23668828-23668847 MsG0580025746.01.T01:CDS 30.0%
TATTGAAGAGAATTGGGATA+AGG - Chr5:23669924-23669943 MsG0580025746.01.T01:intron 30.0%
TATTGGACCAATTTGACTAA+TGG - Chr5:23672182-23672201 MsG0580025746.01.T01:intron 30.0%
TCATCAATAAGCCATTGATA+CGG + Chr5:23671479-23671498 None:intergenic 30.0%
TCATTTGACATACGTATTCA+AGG - Chr5:23672337-23672356 MsG0580025746.01.T01:intron 30.0%
TTATGTCCGAATTTATGGTT+AGG - Chr5:23668827-23668846 MsG0580025746.01.T01:CDS 30.0%
TTCAATTAGCTAACCTCAAT+CGG + Chr5:23672819-23672838 None:intergenic 30.0%
TTGAATATGTCCATTGTAGT+AGG + Chr5:23672261-23672280 None:intergenic 30.0%
TTGAATGCAACTACATGTTT+GGG + Chr5:23671419-23671438 None:intergenic 30.0%
TTGGCAAAAGATATACTCAA+GGG + Chr5:23672157-23672176 None:intergenic 30.0%
TTTATGTGCAGGAAATAGAT+GGG + Chr5:23669986-23670005 None:intergenic 30.0%
TTTCAAGAACTTCAAGAAGT+AGG - Chr5:23670549-23670568 MsG0580025746.01.T01:intron 30.0%
TTTCACAAATGAAGCAACTT+GGG + Chr5:23669603-23669622 None:intergenic 30.0%
TTTCCATCAACCAATGTAAA+AGG + Chr5:23670484-23670503 None:intergenic 30.0%
! AAAATATAGGTTGAAATGGG+TGG - Chr5:23669775-23669794 MsG0580025746.01.T01:intron 30.0%
! AAGATGAAAAGTATGTGTTG+TGG + Chr5:23669952-23669971 None:intergenic 30.0%
! ACATTTTCAACCACTCTTTT+TGG + Chr5:23673159-23673178 None:intergenic 30.0%
! AGAGATGAATCCTTTTACAT+TGG - Chr5:23670471-23670490 MsG0580025746.01.T01:intron 30.0%
! CCCATTTCAAATTAGCTTAA+TGG + Chr5:23668398-23668417 None:intergenic 30.0%
! GACTTCATTTTGTAAACACA+CGG + Chr5:23673134-23673153 None:intergenic 30.0%
! GTCTTGTTAGTTCATACTAA+TGG - Chr5:23670608-23670627 MsG0580025746.01.T01:intron 30.0%
! TACTTTTAGTGGCATAATTC+GGG - Chr5:23672581-23672600 MsG0580025746.01.T01:intron 30.0%
! TGAAACCTGACATGTTATTT+GGG - Chr5:23669534-23669553 MsG0580025746.01.T01:CDS 30.0%
! TGATTCTAAGAGATTGTTGA+AGG - Chr5:23668600-23668619 MsG0580025746.01.T01:CDS 30.0%
! TTGTTGTTGTTGTATTCTGT+AGG - Chr5:23672048-23672067 MsG0580025746.01.T01:intron 30.0%
! TTTTATGTGCAGGAAATAGA+TGG + Chr5:23669987-23670006 None:intergenic 30.0%
!! AAGAAAGCATTAACCTGAAA+TGG + Chr5:23673021-23673040 None:intergenic 30.0%
!! AATCCTTTTACATTGGTTGA+TGG - Chr5:23670478-23670497 MsG0580025746.01.T01:intron 30.0%
!! AATTGGTTTGGTCATATTTC+AGG - Chr5:23670033-23670052 MsG0580025746.01.T01:intron 30.0%
!! ACTTTCTTCTAGGATATGTT+AGG - Chr5:23671312-23671331 MsG0580025746.01.T01:intron 30.0%
!! AGTTTGTTAGCAAATGTGTT+AGG + Chr5:23671181-23671200 None:intergenic 30.0%
!! CATTCATGGATTAGATGAAA+AGG - Chr5:23670733-23670752 MsG0580025746.01.T01:intron 30.0%
!! CTACTTTTAGTGGCATAATT+CGG - Chr5:23672580-23672599 MsG0580025746.01.T01:intron 30.0%
!! GTGATTTTCACTCTTTTTCA+AGG - Chr5:23670289-23670308 MsG0580025746.01.T01:intron 30.0%
!!! AAGACTGTTTTTATTCCAAC+GGG - Chr5:23670058-23670077 MsG0580025746.01.T01:intron 30.0%
!!! GCACTGTTTTTATAGATCAA+GGG - Chr5:23670244-23670263 MsG0580025746.01.T01:intron 30.0%
!!! TCAAGGGTGTTTATGTATTT+TGG + Chr5:23672141-23672160 None:intergenic 30.0%
!!! TGCACTGTTTTTATAGATCA+AGG - Chr5:23670243-23670262 MsG0580025746.01.T01:intron 30.0%
!!! TTGTTTTGGTTTGTGCTTTA+AGG - Chr5:23669442-23669461 MsG0580025746.01.T01:intron 30.0%
AAATGAAAGAAAGTGGGATC+TGG + Chr5:23668311-23668330 None:intergenic 35.0%
AACTGAACTCTCTGAATTCT+AGG - Chr5:23671251-23671270 MsG0580025746.01.T01:CDS 35.0%
AATGAAAGAAAGTGGGATCT+GGG + Chr5:23668310-23668329 None:intergenic 35.0%
AATGACTGGTATATGCAAAC+AGG - Chr5:23672962-23672981 MsG0580025746.01.T01:intron 35.0%
AATGTATATTAACACGCCAC+TGG - Chr5:23670327-23670346 MsG0580025746.01.T01:intron 35.0%
AATTACACCAGATTCCTCTA+AGG + Chr5:23670909-23670928 None:intergenic 35.0%
AATTCAGAGAGTTCAGTTAC+AGG + Chr5:23671249-23671268 None:intergenic 35.0%
ACCTGAAATGGATAGTTAAG+CGG + Chr5:23673009-23673028 None:intergenic 35.0%
ACTAATGGAAGACACATTCA+AGG - Chr5:23672197-23672216 MsG0580025746.01.T01:intron 35.0%
ACTGAACTCTCTGAATTCTA+GGG - Chr5:23671252-23671271 MsG0580025746.01.T01:CDS 35.0%
ATAGATCAAGGGAGAAATTG+AGG - Chr5:23670255-23670274 MsG0580025746.01.T01:intron 35.0%
ATGAAGTCATCCAAAAAGAG+TGG - Chr5:23673146-23673165 MsG0580025746.01.T01:five_prime_UTR 35.0%
ATGTATATTAACACGCCACT+GGG - Chr5:23670328-23670347 MsG0580025746.01.T01:intron 35.0%
ATTACACCAGATTCCTCTAA+GGG + Chr5:23670908-23670927 None:intergenic 35.0%
CCAAACCAATTTGAAGGTTA+TGG + Chr5:23670024-23670043 None:intergenic 35.0%
CCATAACCTTCAAATTGGTT+TGG - Chr5:23670021-23670040 MsG0580025746.01.T01:intron 35.0%
CCATATGAGAGAAAATGAGT+TGG + Chr5:23671288-23671307 None:intergenic 35.0%
CTTTCACAAATGAAGCAACT+TGG + Chr5:23669604-23669623 None:intergenic 35.0%
GAATTGATGAACGAACGATT+TGG + Chr5:23668237-23668256 None:intergenic 35.0%
GATCCAGGAATCAAAGTTAA+AGG - Chr5:23672701-23672720 MsG0580025746.01.T01:CDS 35.0%
GGAAACTATGCAGAATATAG+TGG - Chr5:23671796-23671815 MsG0580025746.01.T01:CDS 35.0%
GTGAAACCTGACATGTTATT+TGG - Chr5:23669533-23669552 MsG0580025746.01.T01:CDS 35.0%
GTGTCTTCCATTAGTCAAAT+TGG + Chr5:23672192-23672211 None:intergenic 35.0%
GTTAGTGCAGTTCAAATATG+TGG - Chr5:23668800-23668819 MsG0580025746.01.T01:CDS 35.0%
GTTTGGAGAGAAAGAAAAGA+AGG + Chr5:23668161-23668180 None:intergenic 35.0%
TATGTCCATTGTAGTAGGTT+TGG + Chr5:23672256-23672275 None:intergenic 35.0%
TCAATTAGCTAACCTCAATC+GGG + Chr5:23672818-23672837 None:intergenic 35.0%
TCTTCATTATGTGGGATGAA+AGG + Chr5:23669835-23669854 None:intergenic 35.0%
TGAATGTAAGGTTTGAAGGA+CGG + Chr5:23669671-23669690 None:intergenic 35.0%
TTATGTGCAGGAAATAGATG+GGG + Chr5:23669985-23670004 None:intergenic 35.0%
TTCACGAGTTATGAAACTGA+TGG - Chr5:23671011-23671030 MsG0580025746.01.T01:intron 35.0%
! AAGTTTGAAGTGAACGTTGA+TGG - Chr5:23673058-23673077 MsG0580025746.01.T01:intron 35.0%
! AATTTCCATTGCCATTTGGA+AGG - Chr5:23670687-23670706 MsG0580025746.01.T01:intron 35.0%
! AGCATAAGCTTTTCAGAATG+TGG - Chr5:23669892-23669911 MsG0580025746.01.T01:intron 35.0%
! ATAAGCTTTTCAGAATGTGG+AGG - Chr5:23669895-23669914 MsG0580025746.01.T01:intron 35.0%
! ATTTCCATTGCCATTTGGAA+GGG - Chr5:23670688-23670707 MsG0580025746.01.T01:intron 35.0%
! CAAAAAAGGGCTCTTGTTAT+AGG - Chr5:23672525-23672544 MsG0580025746.01.T01:intron 35.0%
! CCAACTCATTTTCTCTCATA+TGG - Chr5:23671285-23671304 MsG0580025746.01.T01:CDS 35.0%
! CTTTTGAACTATTGTGATCC+AGG - Chr5:23672686-23672705 MsG0580025746.01.T01:intron 35.0%
!! CTTTACTTTTCTGTCAGATC+TGG - Chr5:23670435-23670454 MsG0580025746.01.T01:intron 35.0%
!! GAAGTATTGCTGTTTCTGAT+AGG + Chr5:23671341-23671360 None:intergenic 35.0%
!! TGGTTTGTGCTTTAAGGTTA+CGG - Chr5:23669448-23669467 MsG0580025746.01.T01:intron 35.0%
!!! AACGATTTGGTTTTGTGTGA+TGG + Chr5:23668224-23668243 None:intergenic 35.0%
!!! CTATAACAAGAGCCCTTTTT+TGG + Chr5:23672527-23672546 None:intergenic 35.0%
!!! GCATTTTTTCTAGACCCTTT+TGG + Chr5:23672770-23672789 None:intergenic 35.0%
AAATGATGAGGTTGTTGGGT+TGG + Chr5:23668132-23668151 None:intergenic 40.0%
AACATTGTCTCTGACAGACT+TGG - Chr5:23669865-23669884 MsG0580025746.01.T01:intron 40.0%
AATTTGGACAATGGTTGCTG+GGG - Chr5:23671617-23671636 MsG0580025746.01.T01:intron 40.0%
ATAACCCTTCCAAATGGCAA+TGG + Chr5:23670695-23670714 None:intergenic 40.0%
ATATGGCTCCACTTTCTTCT+AGG - Chr5:23671302-23671321 MsG0580025746.01.T01:intron 40.0%
ATGAACAGACGTTGTCGTAT+TGG - Chr5:23670644-23670663 MsG0580025746.01.T01:CDS 40.0%
ATTCACTGTGTTGAACCCAA+AGG - Chr5:23671590-23671609 MsG0580025746.01.T01:intron 40.0%
CAAGAATGCACCTTTATGTG+AGG - Chr5:23672727-23672746 MsG0580025746.01.T01:CDS 40.0%
CAGCAACCATTGTCCAAATT+CGG + Chr5:23671617-23671636 None:intergenic 40.0%
CCTCTCATATCCAAAGGATA+AGG + Chr5:23670508-23670527 None:intergenic 40.0%
CCTTATCCTTTGGATATGAG+AGG - Chr5:23670505-23670524 MsG0580025746.01.T01:intron 40.0%
CTAGAAAAAATGCGAGCACT+TGG - Chr5:23672777-23672796 MsG0580025746.01.T01:exon 40.0%
CTTACTTGTGCAGACTTGAT+AGG + Chr5:23668658-23668677 None:intergenic 40.0%
GAATTTGGACAATGGTTGCT+GGG - Chr5:23671616-23671635 MsG0580025746.01.T01:intron 40.0%
GGTTGCCTTGAATTTGGATT+TGG - Chr5:23669577-23669596 MsG0580025746.01.T01:CDS 40.0%
GTCACTTCATGCTGCAAATA+TGG + Chr5:23671716-23671735 None:intergenic 40.0%
GTCTGTCAGAGACAATGTTA+AGG + Chr5:23669864-23669883 None:intergenic 40.0%
GTTACAGGTTCGCTATATGA+AGG + Chr5:23671234-23671253 None:intergenic 40.0%
TAGGTATTCTGCGAACACTA+TGG - Chr5:23671977-23671996 MsG0580025746.01.T01:intron 40.0%
TAGTGTCATCTACGCTGATA+CGG - Chr5:23671647-23671666 MsG0580025746.01.T01:intron 40.0%
TATGGCATAAGCACTTGCAA+AGG + Chr5:23669296-23669315 None:intergenic 40.0%
TCCATGAATGAAAGACTCAG+TGG + Chr5:23670723-23670742 None:intergenic 40.0%
TCCGCTTAACTATCCATTTC+AGG - Chr5:23673005-23673024 MsG0580025746.01.T01:intron 40.0%
TGAATTTACCTCCAAGGGAA+GGG + Chr5:23670125-23670144 None:intergenic 40.0%
TGCAAAACCTCCTCTTCATT+GGG + Chr5:23671826-23671845 None:intergenic 40.0%
TTAATACAGGTAGGCGATCT+TGG - Chr5:23671757-23671776 MsG0580025746.01.T01:CDS 40.0%
TTAATTTCCTTTCCCGTTCC+TGG - Chr5:23673088-23673107 MsG0580025746.01.T01:five_prime_UTR 40.0%
TTACACCAGATTCCTCTAAG+GGG + Chr5:23670907-23670926 None:intergenic 40.0%
TTCACTGTGTTGAACCCAAA+GGG - Chr5:23671591-23671610 MsG0580025746.01.T01:intron 40.0%
TTGAATTTACCTCCAAGGGA+AGG + Chr5:23670126-23670145 None:intergenic 40.0%
TTGGGCCAAATCCAAATTCA+AGG + Chr5:23669585-23669604 None:intergenic 40.0%
! AAAAGGGCTCTTGTTATAGG+TGG - Chr5:23672528-23672547 MsG0580025746.01.T01:intron 40.0%
! ATACCAGTCATTGTTGCTTC+AGG + Chr5:23672954-23672973 None:intergenic 40.0%
! CTGCCTTTAACTTTGATTCC+TGG + Chr5:23672707-23672726 None:intergenic 40.0%
! CTTTAAGAGACTTTCTGGCA+AGG - Chr5:23668627-23668646 MsG0580025746.01.T01:CDS 40.0%
! GAGCACTTTAAGAGACTTTC+TGG - Chr5:23668622-23668641 MsG0580025746.01.T01:CDS 40.0%
! TATGGTGCTAACGTGAACAA+CGG - Chr5:23671926-23671945 MsG0580025746.01.T01:intron 40.0%
! TGATGGAAAGCCTTATCCTT+TGG - Chr5:23670495-23670514 MsG0580025746.01.T01:intron 40.0%
!! TCATTTGTGAAAGAGCGTCT+TGG - Chr5:23669611-23669630 MsG0580025746.01.T01:intron 40.0%
!! TCTAGACCCTTTTGGTAGTT+CGG + Chr5:23672762-23672781 None:intergenic 40.0%
!! TGGTTTGGTTGCCTTGAATT+TGG - Chr5:23669571-23669590 MsG0580025746.01.T01:CDS 40.0%
!!! GATGTTGCTGCTACTTTTAG+TGG - Chr5:23672570-23672589 MsG0580025746.01.T01:intron 40.0%
AAAAATGCGAGCACTTGGAG+AGG - Chr5:23672782-23672801 MsG0580025746.01.T01:exon 45.0%
AAAGGGCCGAATTTGGACAA+TGG - Chr5:23671608-23671627 MsG0580025746.01.T01:intron 45.0%
AAGTGGGATCTGGGAATTAC+CGG + Chr5:23668301-23668320 None:intergenic 45.0%
AATTCGGGCACTAAAGGAGA+AGG - Chr5:23672596-23672615 MsG0580025746.01.T01:intron 45.0%
ACAAATTCCAGGAACGGGAA+AGG + Chr5:23673098-23673117 None:intergenic 45.0%
AGCTGCAAGACAAGGAACAA+TGG - Chr5:23669489-23669508 MsG0580025746.01.T01:intron 45.0%
ATGCACGCTACAGTGAATCA+AGG + Chr5:23669402-23669421 None:intergenic 45.0%
ATTGTCCAAATTCGGCCCTT+TGG + Chr5:23671609-23671628 None:intergenic 45.0%
ATTTGGACAATGGTTGCTGG+GGG - Chr5:23671618-23671637 MsG0580025746.01.T01:intron 45.0%
CGAATTTGGACAATGGTTGC+TGG - Chr5:23671615-23671634 MsG0580025746.01.T01:intron 45.0%
CGCTTCCCAAATAACATGTC+AGG + Chr5:23669542-23669561 None:intergenic 45.0%
CTGCAAAACCTCCTCTTCAT+TGG + Chr5:23671827-23671846 None:intergenic 45.0%
GAAGCGTGGTAAAAGTGGTT+TGG - Chr5:23669556-23669575 MsG0580025746.01.T01:CDS 45.0%
GAGAGCCAAACCTACTACAA+TGG - Chr5:23672248-23672267 MsG0580025746.01.T01:intron 45.0%
GAGTAACAAGAGCCCTTTGT+CGG + Chr5:23672443-23672462 None:intergenic 45.0%
GCACTCATAACCCTTCCAAA+TGG + Chr5:23670701-23670720 None:intergenic 45.0%
GCCACTGAGTCTTTCATTCA+TGG - Chr5:23670719-23670738 MsG0580025746.01.T01:intron 45.0%
GGAGTCTATGTCCGTATCAA+TGG - Chr5:23671465-23671484 MsG0580025746.01.T01:CDS 45.0%
GTTAGGAGAGAATGTCTCTC+TGG + Chr5:23671164-23671183 None:intergenic 45.0%
GTTGAAATGGGTGGATGCAA+GGG - Chr5:23669784-23669803 MsG0580025746.01.T01:intron 45.0%
TGGCATAATTCGGGCACTAA+AGG - Chr5:23672590-23672609 MsG0580025746.01.T01:intron 45.0%
TGTAAGGTTTGAAGGACGGA+CGG + Chr5:23669667-23669686 None:intergenic 45.0%
TTGCAGCTCAGTGAAATCAG+TGG + Chr5:23669477-23669496 None:intergenic 45.0%
TTGTCCAAATTCGGCCCTTT+GGG + Chr5:23671608-23671627 None:intergenic 45.0%
TTTCACTGAGCTGCAAGACA+AGG - Chr5:23669481-23669500 MsG0580025746.01.T01:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + Chr5:23672026-23672045 None:intergenic 45.0%
! ACAGGCGCACACATATTTTC+TGG + Chr5:23670822-23670841 None:intergenic 45.0%
! ATGGTGCTAACGTGAACAAC+GGG - Chr5:23671927-23671946 MsG0580025746.01.T01:intron 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + Chr5:23672027-23672046 None:intergenic 45.0%
! CTGTTTTGCCACCATTGTAG+AGG + Chr5:23671098-23671117 None:intergenic 45.0%
! GACATGTTATTTGGGAAGCG+TGG - Chr5:23669542-23669561 MsG0580025746.01.T01:CDS 45.0%
! TTTGGGAAGCGTGGTAAAAG+TGG - Chr5:23669551-23669570 MsG0580025746.01.T01:CDS 45.0%
!! CTTGGCTTTGCAAATGAGCT+TGG - Chr5:23671775-23671794 MsG0580025746.01.T01:CDS 45.0%
!! GAAAGAGCGTCTTGGTAAAG+AGG - Chr5:23669619-23669638 MsG0580025746.01.T01:intron 45.0%
!! TGTTGGGTTGGTGAAGATGA+TGG + Chr5:23668120-23668139 None:intergenic 45.0%
!! TTGTCGTATTGGTTGCAGGT+GGG - Chr5:23670655-23670674 MsG0580025746.01.T01:CDS 45.0%
!!! AAGAGCCCTTTTTTGGCCAT+CGG + Chr5:23672520-23672539 None:intergenic 45.0%
!!! TTTTTTTTTTTTTGTAATTT+TGG - Chr5:23672291-23672310 MsG0580025746.01.T01:intron 5.0%
AACCTCATCCATCCTCCTTC+CGG - Chr5:23668279-23668298 MsG0580025746.01.T01:three_prime_UTR 50.0%
AAGGGAAGGGTTGCAACAAG+TGG + Chr5:23670112-23670131 None:intergenic 50.0%
ACACCCGCTTCACGCATTTA+GGG + Chr5:23672093-23672112 None:intergenic 50.0%
AGCTCGCCTCTCATATCCAA+AGG + Chr5:23670514-23670533 None:intergenic 50.0%
AGGGAAGGGTTGCAACAAGT+GGG + Chr5:23670111-23670130 None:intergenic 50.0%
ATCTGGGAATTACCGGAAGG+AGG + Chr5:23668294-23668313 None:intergenic 50.0%
ATGCACCTTTATGTGAGGCG+AGG - Chr5:23672732-23672751 MsG0580025746.01.T01:CDS 50.0%
CCACTTAGTGGGATAAGGCT+TGG - Chr5:23672025-23672044 MsG0580025746.01.T01:intron 50.0%
CGAGCACTTGGAGAGGAAAT+TGG - Chr5:23672789-23672808 MsG0580025746.01.T01:intron 50.0%
CGAGCGTACAACCTCTACAA+TGG - Chr5:23671084-23671103 MsG0580025746.01.T01:CDS 50.0%
CTTATCCCACTAAGTGGGGT+CGG + Chr5:23672022-23672041 None:intergenic 50.0%
GATGTAAGAGACACTCCCGT+TGG + Chr5:23670076-23670095 None:intergenic 50.0%
GATTGCACAAGTACACCCAG+TGG + Chr5:23670346-23670365 None:intergenic 50.0%
GCGTACAACCTCTACAATGG+TGG - Chr5:23671087-23671106 MsG0580025746.01.T01:intron 50.0%
GGAAATTGGCATCCCGATTG+AGG - Chr5:23672803-23672822 MsG0580025746.01.T01:intron 50.0%
GGACCTGAAGCAACAATGAC+TGG - Chr5:23672948-23672967 MsG0580025746.01.T01:intron 50.0%
GGAGAGAATGTCTCTCTGGT+AGG + Chr5:23671160-23671179 None:intergenic 50.0%
GGTTGAAATGGGTGGATGCA+AGG - Chr5:23669783-23669802 MsG0580025746.01.T01:intron 50.0%
GTTCGCTATATGAAGGAGCG+AGG + Chr5:23671227-23671246 None:intergenic 50.0%
TAGTGGTGCACCCAATGAAG+AGG - Chr5:23671813-23671832 MsG0580025746.01.T01:CDS 50.0%
TGAACCCAAAGGGCCGAATT+TGG - Chr5:23671601-23671620 MsG0580025746.01.T01:intron 50.0%
TGCACCTTTATGTGAGGCGA+GGG - Chr5:23672733-23672752 MsG0580025746.01.T01:CDS 50.0%
TGGTCCCTAAATGCGTGAAG+CGG - Chr5:23672086-23672105 MsG0580025746.01.T01:intron 50.0%
TGTCTGACACCGACACATGT+CGG + Chr5:23671386-23671405 None:intergenic 50.0%
! ACCAGATTCCTCTAAGGGGT+AGG + Chr5:23670903-23670922 None:intergenic 50.0%
! ACTTGTTGCAACCCTTCCCT+TGG - Chr5:23670111-23670130 MsG0580025746.01.T01:intron 50.0%
! AGATTCCTCTAAGGGGTAGG+GGG + Chr5:23670900-23670919 None:intergenic 50.0%
! AGGGCTCTTGTTATAGGTGG+AGG - Chr5:23672531-23672550 MsG0580025746.01.T01:intron 50.0%
! CAGATTCCTCTAAGGGGTAG+GGG + Chr5:23670901-23670920 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + Chr5:23672028-23672047 None:intergenic 50.0%
! CCAGATTCCTCTAAGGGGTA+GGG + Chr5:23670902-23670921 None:intergenic 50.0%
! TCTGGTAGGAGCTTAGCTCT+GGG + Chr5:23671146-23671165 None:intergenic 50.0%
!! ACATGTGTCGGTGTCAGACA+CGG - Chr5:23671386-23671405 MsG0580025746.01.T01:intron 50.0%
!! AGGTTGGTGAGATGAGTGGT+TGG + Chr5:23668264-23668283 None:intergenic 50.0%
!! GACGTTGTCGTATTGGTTGC+AGG - Chr5:23670651-23670670 MsG0580025746.01.T01:CDS 50.0%
!! GATGAGGTTGGTGAGATGAG+TGG + Chr5:23668268-23668287 None:intergenic 50.0%
!! GTTGTCGTATTGGTTGCAGG+TGG - Chr5:23670654-23670673 MsG0580025746.01.T01:CDS 50.0%
!! TGTCGTATTGGTTGCAGGTG+GGG - Chr5:23670656-23670675 MsG0580025746.01.T01:CDS 50.0%
!!! AGAGCCCTTTTTTGGCCATC+GGG + Chr5:23672519-23672538 None:intergenic 50.0%
!!! AGGTGTGCTTTTTCCCACTC+TGG - Chr5:23669639-23669658 MsG0580025746.01.T01:intron 50.0%
ACCGACACATGTCGGACACT+AGG + Chr5:23671378-23671397 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + Chr5:23672014-23672033 None:intergenic 55.0%
AGGGGGTCCGAACTACCAAA+AGG - Chr5:23672752-23672771 MsG0580025746.01.T01:CDS 55.0%
ATGTAGCCGACCCCACTTAG+TGG - Chr5:23672013-23672032 MsG0580025746.01.T01:intron 55.0%
CACCTTTATGTGAGGCGAGG+GGG - Chr5:23672735-23672754 MsG0580025746.01.T01:CDS 55.0%
CCCTACCCCTTAGAGGAATC+TGG - Chr5:23670899-23670918 MsG0580025746.01.T01:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - Chr5:23672020-23672039 MsG0580025746.01.T01:intron 55.0%
CGACCCCGATGGCCAAAAAA+GGG - Chr5:23672512-23672531 MsG0580025746.01.T01:intron 55.0%
CTCTGGTAGGAGCTTAGCTC+TGG + Chr5:23671147-23671166 None:intergenic 55.0%
GAATACCCCCTACCCCTTAG+AGG - Chr5:23670892-23670911 MsG0580025746.01.T01:CDS 55.0%
GACACCCGCTTCACGCATTT+AGG + Chr5:23672094-23672113 None:intergenic 55.0%
GCACCTTTATGTGAGGCGAG+GGG - Chr5:23672734-23672753 MsG0580025746.01.T01:CDS 55.0%
GCCTAGTGTCCGACATGTGT+CGG - Chr5:23671374-23671393 MsG0580025746.01.T01:intron 55.0%
GGAAGGAGGATGGATGAGGT+TGG + Chr5:23668280-23668299 None:intergenic 55.0%
GGGAAGGGTTGCAACAAGTG+GGG + Chr5:23670110-23670129 None:intergenic 55.0%
GGGAATTACCGGAAGGAGGA+TGG + Chr5:23668290-23668309 None:intergenic 55.0%
GGGATCTGGGAATTACCGGA+AGG + Chr5:23668297-23668316 None:intergenic 55.0%
GGGGGTCCGAACTACCAAAA+GGG - Chr5:23672753-23672772 MsG0580025746.01.T01:CDS 55.0%
GGTCCCTAAATGCGTGAAGC+GGG - Chr5:23672087-23672106 MsG0580025746.01.T01:intron 55.0%
TACCGGAAGGAGGATGGATG+AGG + Chr5:23668284-23668303 None:intergenic 55.0%
TCAGGGTCAGCAGTTGCACA+TGG + Chr5:23672417-23672436 None:intergenic 55.0%
TGACCCTGATGGCCGACAAA+GGG - Chr5:23672428-23672447 MsG0580025746.01.T01:intron 55.0%
TGGTGCACCCAATGAAGAGG+AGG - Chr5:23671816-23671835 MsG0580025746.01.T01:CDS 55.0%
TGTAGCCGACCCCACTTAGT+GGG - Chr5:23672014-23672033 MsG0580025746.01.T01:intron 55.0%
TGTGCAACTGCTGACCCTGA+TGG - Chr5:23672417-23672436 MsG0580025746.01.T01:intron 55.0%
TGTTGCAACCCTTCCCTTGG+AGG - Chr5:23670114-23670133 MsG0580025746.01.T01:intron 55.0%
!! TAGGAGCTTAGCTCTGGGCA+GGG + Chr5:23671141-23671160 None:intergenic 55.0%
!!! CCTTTTTTGGCCATCGGGGT+CGG + Chr5:23672514-23672533 None:intergenic 55.0%
!!! GAGCCCTTTTTTGGCCATCG+GGG + Chr5:23672518-23672537 None:intergenic 55.0%
AGAGCCCTTTGTCGGCCATC+AGG + Chr5:23672435-23672454 None:intergenic 60.0%
CCGACCCCGATGGCCAAAAA+AGG - Chr5:23672511-23672530 MsG0580025746.01.T01:intron 60.0%
CTGACCCTGATGGCCGACAA+AGG - Chr5:23672427-23672446 MsG0580025746.01.T01:intron 60.0%
GACCCCCTCGCCTCACATAA+AGG + Chr5:23672740-23672759 None:intergenic 60.0%
GAGCCCTTTGTCGGCCATCA+GGG + Chr5:23672434-23672453 None:intergenic 60.0%
TGGACAATGGTTGCTGGGGG+AGG - Chr5:23671621-23671640 MsG0580025746.01.T01:intron 60.0%
!! AGGAGCTTAGCTCTGGGCAG+GGG + Chr5:23671140-23671159 None:intergenic 60.0%
!! GTAGGAGCTTAGCTCTGGGC+AGG + Chr5:23671142-23671161 None:intergenic 60.0%
AAGGACGGACGGAGCCAGAG+TGG + Chr5:23669656-23669675 None:intergenic 65.0%
AGGACGGACGGAGCCAGAGT+GGG + Chr5:23669655-23669674 None:intergenic 65.0%
TGTGCAACTGCCGACCCCGA+TGG - Chr5:23672501-23672520 MsG0580025746.01.T01:intron 65.0%
CGGGGTCGGCAGTTGCACAC+TGG + Chr5:23672500-23672519 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 23668115 23673249 23668115 ID=MsG0580025746.01;Name=MsG0580025746.01
Chr5 mRNA 23668115 23673249 23668115 ID=MsG0580025746.01.T01;Parent=MsG0580025746.01;Name=MsG0580025746.01.T01;_AED=0.34;_eAED=0.34;_QI=197|1|1|1|0.91|0.84|13|236|423
Chr5 exon 23668115 23668422 23668115 ID=MsG0580025746.01.T01:exon:4457;Parent=MsG0580025746.01.T01
Chr5 exon 23668540 23668656 23668540 ID=MsG0580025746.01.T01:exon:4456;Parent=MsG0580025746.01.T01
Chr5 exon 23668747 23668863 23668747 ID=MsG0580025746.01.T01:exon:4455;Parent=MsG0580025746.01.T01
Chr5 exon 23669497 23669598 23669497 ID=MsG0580025746.01.T01:exon:4454;Parent=MsG0580025746.01.T01
Chr5 exon 23669696 23669791 23669696 ID=MsG0580025746.01.T01:exon:4453;Parent=MsG0580025746.01.T01
Chr5 exon 23670610 23670691 23670610 ID=MsG0580025746.01.T01:exon:4452;Parent=MsG0580025746.01.T01
Chr5 exon 23670798 23670912 23670798 ID=MsG0580025746.01.T01:exon:4451;Parent=MsG0580025746.01.T01
Chr5 exon 23671054 23671105 23671054 ID=MsG0580025746.01.T01:exon:4450;Parent=MsG0580025746.01.T01
Chr5 exon 23671229 23671309 23671229 ID=MsG0580025746.01.T01:exon:4449;Parent=MsG0580025746.01.T01
Chr5 exon 23671419 23671580 23671419 ID=MsG0580025746.01.T01:exon:4448;Parent=MsG0580025746.01.T01
Chr5 exon 23671724 23671900 23671724 ID=MsG0580025746.01.T01:exon:4447;Parent=MsG0580025746.01.T01
Chr5 exon 23672692 23672801 23672692 ID=MsG0580025746.01.T01:exon:4446;Parent=MsG0580025746.01.T01
Chr5 exon 23673064 23673249 23673064 ID=MsG0580025746.01.T01:exon:4445;Parent=MsG0580025746.01.T01
Chr5 five_prime_UTR 23673064 23673249 23673064 ID=MsG0580025746.01.T01:five_prime_utr;Parent=MsG0580025746.01.T01
Chr5 five_prime_UTR 23672791 23672801 23672791 ID=MsG0580025746.01.T01:five_prime_utr;Parent=MsG0580025746.01.T01
Chr5 CDS 23672692 23672790 23672692 ID=MsG0580025746.01.T01:cds;Parent=MsG0580025746.01.T01
Chr5 CDS 23671724 23671900 23671724 ID=MsG0580025746.01.T01:cds;Parent=MsG0580025746.01.T01
Chr5 CDS 23671419 23671580 23671419 ID=MsG0580025746.01.T01:cds;Parent=MsG0580025746.01.T01
Chr5 CDS 23671229 23671309 23671229 ID=MsG0580025746.01.T01:cds;Parent=MsG0580025746.01.T01
Chr5 CDS 23671054 23671105 23671054 ID=MsG0580025746.01.T01:cds;Parent=MsG0580025746.01.T01
Chr5 CDS 23670798 23670912 23670798 ID=MsG0580025746.01.T01:cds;Parent=MsG0580025746.01.T01
Chr5 CDS 23670610 23670691 23670610 ID=MsG0580025746.01.T01:cds;Parent=MsG0580025746.01.T01
Chr5 CDS 23669696 23669791 23669696 ID=MsG0580025746.01.T01:cds;Parent=MsG0580025746.01.T01
Chr5 CDS 23669497 23669598 23669497 ID=MsG0580025746.01.T01:cds;Parent=MsG0580025746.01.T01
Chr5 CDS 23668747 23668863 23668747 ID=MsG0580025746.01.T01:cds;Parent=MsG0580025746.01.T01
Chr5 CDS 23668540 23668656 23668540 ID=MsG0580025746.01.T01:cds;Parent=MsG0580025746.01.T01
Chr5 CDS 23668351 23668422 23668351 ID=MsG0580025746.01.T01:cds;Parent=MsG0580025746.01.T01
Chr5 three_prime_UTR 23668115 23668350 23668115 ID=MsG0580025746.01.T01:three_prime_utr;Parent=MsG0580025746.01.T01
Gene Sequence

>MsG0580025746.01.T01

ATGGCACGCAAGAAGATCAGAGAATATGATTCTAAGAGATTGTTGAAGGAGCACTTTAAGAGACTTTCTGGCAAGGACTTACCTATCAAGTCTGCACAAGTTACGGAAGCCACTGATTTCACTGAGCTGCAAGACAAGGAACAATGGCTTTCTTCTTCTAAATTGGTTGTGAAACCTGACATGTTATTTGGGAAGCGTGGTAAAAGTGGTTTGGTTGCCTTGAATTTGGATTTGGCCCAAGTTGCTTCATTTGTGAAAGAGCGTCTTGGTAAAGAGGTTGAAATGGGTGGATGCAAGGGACCGATAACAACTTTCATTGTTGAACCTTTCATCCCACATAATGAAGAGTATTACCTTAACATTGTCTCTGACAGACTTGGAAACAGCATAAGCTTTTCAGAATGTGGAGGAATCGATATTGAAGAGAATTGGGATAAGGTTAAGACTGTTTTTATTCCAACGGGAGTGTCTCTTACATCAGAAATCATCGCCCCACTTGTTGCAACCCTTCCCTTGGAGATCAAGGGAGAAATTGAGGAATTTCTCAAGGTGATTTTCACTCTTTTTCAAGATCTGGATTTCACTTTCTTAGAGATGAATCCTTTTACATTGGTTGATGGAAAGCCTTATCCTTTGGATATGAGAGGCGAGCTAGATGACACTGCTGCTTTCAAGAACTTCAAGAAGTGGGGTAACATTGAATTTCCATTGCCATTTGGAAGGGTTATGAGTGCCACTGAGTCTTTCATTCATGGATTAGATGAAAAGACAAGTGCATCTCTAAAATTCACTGTGTTGAACCCAAAGGGCCGAATTTGGACAATGGTTGCTGGGGGAGGCGCTAGTGTCATCTACGCTGATACGGTAGGCGATCTTGGCTTTGCAAATGAGCTTGGAAACTATGCAGAATATAGTGGTGCACCCAATGAAGAGGAGGTTTTGCAGTATGCCAGAGTTGTAATTGATTGTGCAACTGCCGACCCCGATGGCCAAAAAAGGGCTCTTGTTATAGGTGGAGGCATAGCTAACTTCACTGATGTTGCTGCTACTTTTAGTGGCATAATTCGGGCACTAAAGGAGAAGGAATCAAAGTTAAAGGCAGCAAGAATGCACCTTTATGTGAGGCGAGGGGGTCCGAACTACCAAAAGGGTCTAGAAAAAATGCGAGCACTTGGAGAGGAAATTGGCATCCCGATTGAGGTTTATGGACCTGAAGCAACAATGACTGGTATATGCAAACAGGCAATACAGTGCATTACTGCTTCCGCTTAA

Protein sequence

>MsG0580025746.01.T01

MARKKIREYDSKRLLKEHFKRLSGKDLPIKSAQVTEATDFTELQDKEQWLSSSKLVVKPDMLFGKRGKSGLVALNLDLAQVASFVKERLGKEVEMGGCKGPITTFIVEPFIPHNEEYYLNIVSDRLGNSISFSECGGIDIEENWDKVKTVFIPTGVSLTSEIIAPLVATLPLEIKGEIEEFLKVIFTLFQDLDFTFLEMNPFTLVDGKPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFGRVMSATESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGFANELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGQKRALVIGGGIANFTDVAATFSGIIRALKEKESKLKAARMHLYVRRGGPNYQKGLEKMRALGEEIGIPIEVYGPEATMTGICKQAIQCITASA*