AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480019290.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019290.01.T01 MTR_4g027920 98.294 469 7 1 110 578 153 620 0.0 915
MsG0480019290.01.T01 MTR_5g010830 53.153 444 206 1 113 556 65 506 7.34e-165 480
MsG0480019290.01.T01 MTR_1g101500 51.489 470 218 3 113 574 64 531 3.32e-163 476
MsG0480019290.01.T01 MTR_0039s0080 51.193 461 223 1 113 573 38 496 9.24e-162 472
MsG0480019290.01.T01 MTR_3g111020 50.220 454 220 2 110 561 48 497 2.92e-157 461
MsG0480019290.01.T01 MTR_5g067460 47.682 453 235 2 114 566 56 506 3.25e-155 456
MsG0480019290.01.T01 MTR_6g088805 44.695 443 240 2 111 553 25 462 1.71e-138 411
MsG0480019290.01.T01 MTR_6g043810 41.702 470 263 5 110 572 30 495 2.62e-132 396
MsG0480019290.01.T01 MTR_6g043810 41.702 470 263 5 110 572 20 485 2.75e-132 396
MsG0480019290.01.T01 MTR_8g102430 43.297 455 234 4 101 553 9 441 5.81e-132 393
MsG0480019290.01.T01 MTR_2g435930 40.773 466 262 2 110 561 16 481 6.47e-120 364
MsG0480019290.01.T01 MTR_6g081410 32.495 477 314 6 95 567 7 479 1.04e-79 259
MsG0480019290.01.T01 MTR_5g011540 32.900 462 307 2 111 571 41 500 1.73e-78 257
MsG0480019290.01.T01 MTR_6g081300 32.511 446 295 5 110 553 7 448 1.05e-74 246
MsG0480019290.01.T01 MTR_6g081400 31.838 468 305 8 107 567 8 468 3.20e-74 244
MsG0480019290.01.T01 MTR_6g066380 30.717 446 305 4 124 567 38 481 4.59e-73 241
MsG0480019290.01.T01 MTR_1g108810 32.805 442 295 1 110 551 31 470 1.01e-72 241
MsG0480019290.01.T01 MTR_6g081240 32.287 446 290 8 110 550 7 445 8.61e-72 237
MsG0480019290.01.T01 MTR_6g081810 30.152 461 288 5 110 567 24 453 1.30e-71 237
MsG0480019290.01.T01 MTR_6g081780 30.454 463 314 6 95 553 7 465 4.72e-71 236
MsG0480019290.01.T01 MTR_8g106670 29.712 451 313 3 111 560 10 457 3.93e-70 234
MsG0480019290.01.T01 MTR_6g081390 30.217 460 316 4 110 567 9 465 1.28e-68 229
MsG0480019290.01.T01 MTR_6g081310 30.905 453 290 8 137 572 20 466 4.63e-66 223
MsG0480019290.01.T01 MTR_6g004220 30.804 448 299 5 113 555 23 464 9.29e-66 222
MsG0480019290.01.T01 MTR_1g108840 29.425 452 301 9 112 555 40 481 3.07e-64 219
MsG0480019290.01.T01 MTR_6g004220 29.652 489 317 7 82 558 1 474 4.48e-64 218
MsG0480019290.01.T01 MTR_7g082810 29.614 466 314 6 113 572 20 477 1.85e-62 213
MsG0480019290.01.T01 MTR_2g079020 29.462 465 322 3 113 577 37 495 1.46e-57 201
MsG0480019290.01.T01 MTR_2g078970 30.472 466 311 7 109 571 28 483 1.50e-56 198
MsG0480019290.01.T01 MTR_1g109060 31.333 450 293 9 113 555 24 464 1.14e-55 195
MsG0480019290.01.T01 MTR_2g078930 29.783 460 307 6 113 567 43 491 8.02e-55 193
MsG0480019290.01.T01 MTR_2g078960 30.641 421 286 2 113 531 33 449 8.22e-55 193
MsG0480019290.01.T01 MTR_8g069470 26.782 463 328 5 113 571 50 505 2.07e-54 192
MsG0480019290.01.T01 MTR_1g109060 31.306 444 289 9 113 549 24 458 2.23e-54 192
MsG0480019290.01.T01 MTR_1g108990 30.580 448 299 8 113 555 25 465 2.92e-53 189
MsG0480019290.01.T01 MTR_4g048000 25.227 440 327 1 114 553 65 502 1.24e-52 188
MsG0480019290.01.T01 MTR_6g004220 31.755 359 234 5 113 466 30 382 2.57e-52 186
MsG0480019290.01.T01 MTR_7g082800 29.367 395 270 6 175 565 4 393 5.10e-52 183
MsG0480019290.01.T01 MTR_2g088400 24.834 451 337 1 114 564 53 501 9.84e-51 182
MsG0480019290.01.T01 MTR_5g032750 25.690 471 346 4 84 553 7 474 1.15e-50 182
MsG0480019290.01.T01 MTR_2g022980 25.561 446 330 2 114 559 49 492 9.57e-49 177
MsG0480019290.01.T01 MTR_7g087410 25.270 463 341 3 110 572 28 485 1.96e-47 173
MsG0480019290.01.T01 MTR_7g087400 25.212 472 345 3 101 572 18 481 2.79e-47 172
MsG0480019290.01.T01 MTR_5g033100 24.197 467 335 5 114 572 57 512 6.94e-46 169
MsG0480019290.01.T01 MTR_5g032720 25.052 479 349 4 90 564 13 485 1.63e-45 168
MsG0480019290.01.T01 MTR_6g004220 30.539 334 213 4 82 407 1 323 7.35e-43 156
MsG0480019290.01.T01 MTR_3g099720 24.601 439 328 2 114 552 42 477 1.42e-42 159
MsG0480019290.01.T01 MTR_6g027200 25.966 466 332 6 110 572 33 488 1.69e-42 159
MsG0480019290.01.T01 MTR_1g021740 25.270 463 323 5 107 559 29 478 1.83e-42 159
MsG0480019290.01.T01 MTR_2g088400 25.000 404 301 1 114 517 53 454 3.22e-42 158
MsG0480019290.01.T01 MTR_7g087410 24.439 401 298 3 172 572 1 396 6.01e-40 150
MsG0480019290.01.T01 MTR_7g087370 24.406 463 313 4 110 572 27 452 6.19e-40 152
MsG0480019290.01.T01 MTR_1g100180 26.964 471 317 9 113 570 44 500 6.59e-40 152
MsG0480019290.01.T01 MTR_8g063590 25.676 444 323 4 114 554 54 493 2.05e-39 151
MsG0480019290.01.T01 MTR_7g087430 25.823 395 287 3 179 573 8 396 8.99e-39 147
MsG0480019290.01.T01 MTR_6g027190 26.891 476 327 9 104 572 15 476 1.64e-38 148
MsG0480019290.01.T01 MTR_5g090290 25.747 435 313 4 136 566 69 497 1.43e-37 147
MsG0480019290.01.T01 MTR_3g099700 24.336 452 328 6 114 559 47 490 2.55e-36 142
MsG0480019290.01.T01 MTR_6g047610 24.729 461 333 8 113 567 31 483 2.63e-36 142
MsG0480019290.01.T01 MTR_6g047590 24.609 447 330 5 113 558 31 471 2.89e-35 139
MsG0480019290.01.T01 MTR_6g047640 25.054 459 335 5 113 567 31 484 1.61e-33 134
MsG0480019290.01.T01 MTR_6g047640 24.837 459 317 6 113 567 31 465 3.20e-33 132
MsG0480019290.01.T01 MTR_2g078990 28.616 318 215 6 257 571 4 312 2.47e-31 124
MsG0480019290.01.T01 MTR_5g087930 25.063 399 276 5 129 527 42 417 2.28e-26 112
MsG0480019290.01.T01 MTR_2g079030 27.679 224 158 2 354 577 319 538 4.39e-19 91.3
MsG0480019290.01.T01 MTR_5g090280 22.118 425 287 7 172 565 1 412 7.52e-14 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019290.01.T01 AT2G38510 55.858 478 202 3 109 578 1 477 0.0 560
MsG0480019290.01.T01 AT4G29140 46.070 458 245 1 110 567 52 507 1.40e-146 434
MsG0480019290.01.T01 AT1G58340 49.107 448 226 2 113 560 57 502 9.53e-146 431
MsG0480019290.01.T01 AT5G52050 45.975 472 246 3 113 576 34 504 5.35e-145 429
MsG0480019290.01.T01 AT5G19700 47.059 459 239 2 110 568 32 486 3.72e-144 426
MsG0480019290.01.T01 AT4G23030 49.680 469 228 4 113 578 31 494 1.10e-143 425
MsG0480019290.01.T01 AT1G71870 39.069 494 283 3 98 575 8 499 8.84e-125 377
MsG0480019290.01.T01 AT5G49130 40.851 470 264 4 110 566 22 490 1.07e-118 361
MsG0480019290.01.T01 AT4G22790 34.029 479 311 4 90 565 5 481 5.92e-78 255
MsG0480019290.01.T01 AT1G15150 31.818 462 303 4 114 571 31 484 2.37e-71 237
MsG0480019290.01.T01 AT5G52450 31.770 469 312 5 110 575 22 485 1.36e-70 235
MsG0480019290.01.T01 AT1G15160 31.818 462 303 4 114 571 31 484 2.75e-70 234
MsG0480019290.01.T01 AT1G71140 31.767 447 295 6 113 555 25 465 3.03e-70 234
MsG0480019290.01.T01 AT1G15170 33.632 446 282 4 114 553 34 471 6.69e-70 233
MsG0480019290.01.T01 AT2G04070 31.320 447 299 4 110 553 23 464 2.51e-68 229
MsG0480019290.01.T01 AT2G04050 30.717 446 303 3 110 553 23 464 3.06e-68 229
MsG0480019290.01.T01 AT1G64820 30.785 484 304 13 113 578 28 498 8.77e-67 226
MsG0480019290.01.T01 AT2G34360 30.213 470 310 9 111 575 24 480 8.58e-66 223
MsG0480019290.01.T01 AT1G15180 33.560 441 289 3 114 553 35 472 2.90e-65 221
MsG0480019290.01.T01 AT2G04080 30.134 448 303 4 110 553 23 464 4.01e-65 221
MsG0480019290.01.T01 AT2G04080 30.269 446 301 4 110 551 23 462 6.46e-65 220
MsG0480019290.01.T01 AT2G04040 30.180 444 300 4 114 553 27 464 7.89e-65 220
MsG0480019290.01.T01 AT2G04100 30.889 450 303 3 109 555 25 469 3.25e-64 218
MsG0480019290.01.T01 AT2G04100 30.889 450 303 3 109 555 25 469 2.13e-63 216
MsG0480019290.01.T01 AT2G04090 31.556 450 300 3 109 555 25 469 4.93e-63 215
MsG0480019290.01.T01 AT3G23550 30.979 439 298 2 113 551 30 463 2.82e-62 213
MsG0480019290.01.T01 AT1G66780 30.254 433 298 3 133 564 54 483 6.68e-62 212
MsG0480019290.01.T01 AT3G23560 30.296 439 301 2 113 551 38 471 2.07e-60 208
MsG0480019290.01.T01 AT1G66760 29.279 444 310 3 113 555 27 467 1.54e-59 206
MsG0480019290.01.T01 AT1G66760 29.224 438 306 3 113 549 27 461 2.06e-58 202
MsG0480019290.01.T01 AT1G73700 30.323 465 314 7 104 564 14 472 4.10e-58 202
MsG0480019290.01.T01 AT1G15170 33.613 357 223 4 203 553 4 352 4.02e-56 193
MsG0480019290.01.T01 AT1G15150 31.367 373 244 4 203 571 4 368 5.79e-54 188
MsG0480019290.01.T01 AT3G26590 25.455 440 325 2 114 553 45 481 2.47e-53 189
MsG0480019290.01.T01 AT2G34360 27.505 469 282 8 111 575 24 438 3.39e-53 187
MsG0480019290.01.T01 AT5G38030 25.893 448 322 5 111 553 39 481 2.71e-52 187
MsG0480019290.01.T01 AT1G61890 26.136 440 323 1 114 553 47 484 5.41e-52 186
MsG0480019290.01.T01 AT3G21690 24.945 457 341 1 114 570 52 506 8.86e-52 185
MsG0480019290.01.T01 AT1G61890 26.027 438 322 1 114 551 47 482 5.85e-51 183
MsG0480019290.01.T01 AT1G12950 24.839 467 341 5 110 574 63 521 1.46e-50 182
MsG0480019290.01.T01 AT1G11670 24.773 440 329 1 114 553 50 487 6.22e-50 180
MsG0480019290.01.T01 AT3G23560 30.904 343 235 1 113 455 38 378 2.35e-49 177
MsG0480019290.01.T01 AT3G26590 25.594 379 279 2 175 553 4 379 3.30e-49 176
MsG0480019290.01.T01 AT4G21910 26.846 447 310 5 114 553 57 493 7.84e-49 177
MsG0480019290.01.T01 AT4G21910 26.846 447 310 5 114 553 57 493 7.84e-49 177
MsG0480019290.01.T01 AT4G21910 26.846 447 310 5 114 553 55 491 1.15e-48 177
MsG0480019290.01.T01 AT4G21910 26.846 447 310 5 114 553 55 491 1.15e-48 177
MsG0480019290.01.T01 AT1G66760 29.859 355 245 3 113 466 27 378 5.10e-46 167
MsG0480019290.01.T01 AT4G00350 26.471 442 321 2 114 555 88 525 1.15e-45 169
MsG0480019290.01.T01 AT1G47530 25.000 472 333 5 103 564 24 484 2.94e-45 167
MsG0480019290.01.T01 AT4G21903 24.533 428 320 3 137 564 76 500 3.12e-45 167
MsG0480019290.01.T01 AT1G23300 24.947 469 341 5 110 572 40 503 6.70e-45 167
MsG0480019290.01.T01 AT1G61890 26.303 403 295 1 114 516 47 447 2.58e-44 164
MsG0480019290.01.T01 AT4G21903 25.128 390 290 2 175 564 4 391 4.15e-44 162
MsG0480019290.01.T01 AT4G21903 24.356 427 319 4 137 562 76 499 7.08e-44 164
MsG0480019290.01.T01 AT3G59030 25.225 444 319 4 127 565 64 499 6.92e-43 161
MsG0480019290.01.T01 AT1G33110 24.946 461 339 4 114 572 36 491 6.40e-41 155
MsG0480019290.01.T01 AT5G44050 25.486 463 318 10 101 553 32 477 6.47e-41 155
MsG0480019290.01.T01 AT5G10420 25.393 445 320 4 114 553 38 475 7.13e-41 155
MsG0480019290.01.T01 AT1G33080 24.891 458 337 4 110 565 32 484 8.35e-41 155
MsG0480019290.01.T01 AT1G33090 25.877 456 327 5 114 565 36 484 1.80e-40 154
MsG0480019290.01.T01 AT5G65380 24.943 441 327 3 114 553 37 474 7.59e-40 152
MsG0480019290.01.T01 AT1G33100 24.837 459 328 6 114 565 33 481 1.15e-39 151
MsG0480019290.01.T01 AT3G03620 25.410 488 316 11 110 572 33 497 2.23e-39 151
MsG0480019290.01.T01 AT3G03620 25.410 488 316 11 110 572 33 497 2.23e-39 151
MsG0480019290.01.T01 AT1G33080 24.664 446 329 4 110 553 32 472 7.94e-39 149
MsG0480019290.01.T01 AT4G25640 24.837 459 335 4 114 569 34 485 2.77e-38 147
MsG0480019290.01.T01 AT4G25640 24.837 459 335 4 114 569 34 485 4.09e-38 147
MsG0480019290.01.T01 AT1G15180 32.632 285 184 4 203 486 4 281 5.84e-38 145
MsG0480019290.01.T01 AT1G47530 24.745 392 290 3 175 564 4 392 6.94e-38 144
MsG0480019290.01.T01 AT5G17700 23.516 455 327 6 110 555 30 472 7.61e-37 144
MsG0480019290.01.T01 AT5G17700 23.516 455 327 6 110 555 30 472 7.61e-37 144
MsG0480019290.01.T01 AT1G66760 27.545 334 238 3 217 549 3 333 1.53e-33 131
MsG0480019290.01.T01 AT3G59030 25.000 360 258 3 127 481 64 416 1.40e-30 124
MsG0480019290.01.T01 AT4G25640 24.816 407 296 4 114 517 34 433 3.77e-30 124
MsG0480019290.01.T01 AT1G33110 24.528 371 273 4 114 482 36 401 6.78e-26 110
MsG0480019290.01.T01 AT5G17700 22.047 381 276 6 110 481 30 398 8.12e-22 98.6
MsG0480019290.01.T01 AT2G04066 29.032 124 86 1 432 553 36 159 6.06e-13 67.8

Find 121 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAGCTATAATTGGAATTT+TGG 0.197522 4:-17801682 MsG0480019290.01.T01:CDS
CTAGCTACATACTTAAAATT+AGG 0.208174 4:-17802083 MsG0480019290.01.T01:CDS
TTTAGCCATAAAAGTGAAAT+TGG 0.212694 4:+17802311 None:intergenic
GTTCTTAAGAAAGTTCTTAA+TGG 0.219111 4:+17802179 None:intergenic
CCACTTTGTTGTCAAGCTTA+TGG 0.237988 4:-17802404 MsG0480019290.01.T01:CDS
AATTCAATAAACATAACATT+AGG 0.255396 4:-17802029 MsG0480019290.01.T01:CDS
GTTTAGAACTGACCATCTTT+TGG 0.256574 4:+17802379 None:intergenic
CATTAGGCTTGTCATTGTTA+TGG 0.266680 4:+17802565 None:intergenic
CATTAGAGTTGCTCATTTCA+TGG 0.278023 4:-17802781 MsG0480019290.01.T01:intron
CCTCGTGAAATTGTTCAAAT+AGG 0.283764 4:-17805803 MsG0480019290.01.T01:CDS
GCACAAGGAACAGCTATAAT+TGG 0.285590 4:-17801690 MsG0480019290.01.T01:CDS
AAAGATGCACTAAGTGAATA+TGG 0.295388 4:+17801759 None:intergenic
CAAGCCTAATGATGTATTCT+AGG 0.295504 4:-17802553 MsG0480019290.01.T01:CDS
TGTAGAGGTAATGAGTTATC+TGG 0.315347 4:-17805731 MsG0480019290.01.T01:CDS
ATTAGGCTTGTCATTGTTAT+GGG 0.318656 4:+17802566 None:intergenic
ACAAGAATCGGTCATTCATT+AGG 0.319737 4:-17801732 MsG0480019290.01.T01:CDS
AGGTAGGAAGCTTCCTTTAG+AGG 0.363272 4:-17805783 MsG0480019290.01.T01:CDS
GCCTTTCAGTTTGTTTAGAA+TGG 0.363276 4:-17801890 MsG0480019290.01.T01:CDS
AAAGATTGAGCTAATAGTTC+AGG 0.365497 4:+17802209 None:intergenic
CGCGTTTCTACTTGGAGTTT+CGG 0.370887 4:-17801658 MsG0480019290.01.T01:CDS
GTAGCTAGGAAATAATTTAT+TGG 0.377404 4:+17802098 None:intergenic
TTGACCTAGAATACATCATT+AGG 0.377679 4:+17802549 None:intergenic
ATTGATGCAATCATAGTAAT+TGG 0.378468 4:+17802140 None:intergenic
AAACATAACATTAGGGTTGT+TGG 0.379428 4:-17802021 MsG0480019290.01.T01:CDS
ATTCAATAAACATAACATTA+GGG 0.382165 4:-17802028 MsG0480019290.01.T01:CDS
TACTTAAAATTAGGTGTAAA+GGG 0.390913 4:-17802074 MsG0480019290.01.T01:CDS
CATTGTTAGGCCTTTGAGAA+TGG 0.392383 4:+17802436 None:intergenic
GAGATAATGCTATTTCTTTG+TGG 0.395232 4:-17801858 MsG0480019290.01.T01:CDS
GGTTATGTGAAATTAGCAAT+TGG 0.404113 4:-17801536 MsG0480019290.01.T01:CDS
ATACATTGATTCAAACTGAT+TGG 0.404784 4:-17801320 MsG0480019290.01.T01:CDS
CAAACTTCGGTTTCTACAAT+GGG 0.407214 4:-17801819 MsG0480019290.01.T01:CDS
CGATGAGGAAAGTGTGTTGC+TGG 0.413829 4:-17801232 MsG0480019290.01.T01:CDS
GCTGGCGGTTGCCTAGCGCT+TGG 0.414316 4:-17802482 MsG0480019290.01.T01:CDS
CAAGAATCGGTCATTCATTA+GGG 0.418577 4:-17801731 MsG0480019290.01.T01:CDS
ATTTCACATAACCCTAAAAT+CGG 0.422401 4:+17801546 None:intergenic
TACATTGATTCAAACTGATT+GGG 0.422808 4:-17801319 MsG0480019290.01.T01:CDS
ATACTTAAAATTAGGTGTAA+AGG 0.428094 4:-17802075 MsG0480019290.01.T01:CDS
AGAGTGTTCTGAAAAGTGTT+TGG 0.432159 4:+17802357 None:intergenic
TAAGTAAAACTGCTGGCAAA+AGG 0.434918 4:+17802757 None:intergenic
AAGGGTATTGCATTAGCAAC+TGG 0.435288 4:-17802056 MsG0480019290.01.T01:CDS
ATTGGGAACAACAAACTAGA+AGG 0.436030 4:-17801302 MsG0480019290.01.T01:CDS
TTGTAGAAACCGAAGTTTGA+GGG 0.448011 4:+17801823 None:intergenic
ACACCTTGCCATGGCTTAAG+TGG 0.448635 4:+17801975 None:intergenic
TGGTTTGTGGTGTGGAATGT+TGG 0.448965 4:-17801376 MsG0480019290.01.T01:CDS
CAGTTTGTTTAGAATGGTGG+TGG 0.454349 4:-17801884 MsG0480019290.01.T01:CDS
ATTTGTGTACAAATTTGAAT+TGG 0.458236 4:-17801400 MsG0480019290.01.T01:CDS
GTTATGTGAAATTAGCAATT+GGG 0.475368 4:-17801535 MsG0480019290.01.T01:CDS
ATCAATAATTTGTACCTCGT+TGG 0.476743 4:+17801587 None:intergenic
GTGGATCCATTCCCATTGTT+AGG 0.480614 4:+17802423 None:intergenic
ATTACGTAACCCTCAAACTT+CGG 0.482432 4:-17801832 MsG0480019290.01.T01:CDS
ATCGGTCATTCATTAGGGTC+AGG 0.483887 4:-17801726 MsG0480019290.01.T01:CDS
AAGTAAAACTGCTGGCAAAA+GGG 0.484087 4:+17802758 None:intergenic
AGAACTTTCTTAAGAACTCA+AGG 0.484472 4:-17802173 MsG0480019290.01.T01:CDS
ACCTTTCACCATCACTTCCA+TGG 0.485820 4:+17805693 None:intergenic
AATTTGAATTGGTTGGTTTG+TGG 0.486015 4:-17801389 MsG0480019290.01.T01:CDS
GGAAGCTTCCTTTAGAGGGA+TGG 0.488555 4:-17805778 MsG0480019290.01.T01:CDS
GGGATGGGTTAAGTTGAATA+CGG 0.492113 4:-17805762 MsG0480019290.01.T01:CDS
GGTCTTGACCTAGTAATTGA+AGG 0.499524 4:+17802276 None:intergenic
AACTTAACCCATCCCTCTAA+AGG 0.504173 4:+17805770 None:intergenic
TCAAACTTCGGTTTCTACAA+TGG 0.509532 4:-17801820 MsG0480019290.01.T01:CDS
CTTGGTTTCGCCAACATCAC+GGG 0.512823 4:-17802464 MsG0480019290.01.T01:CDS
CTAGGAAATAATTTATTGGT+AGG 0.514148 4:+17802102 None:intergenic
CAAGGAAAAGCAGAGCTAGC+TGG 0.514748 4:-17802500 MsG0480019290.01.T01:CDS
CAAAGGCCTAACAATGGGAA+TGG 0.515571 4:-17802429 MsG0480019290.01.T01:CDS
ATTCTCAAAGGCCTAACAAT+GGG 0.516794 4:-17802434 MsG0480019290.01.T01:CDS
AACTAGAAGGGCATTGGAGT+TGG 0.519723 4:-17801289 MsG0480019290.01.T01:CDS
GGTAATGAGTTATCTGGTTG+TGG 0.520067 4:-17805725 MsG0480019290.01.T01:CDS
GAATTGGTTGGTTTGTGGTG+TGG 0.521874 4:-17801384 MsG0480019290.01.T01:CDS
GGTAGGAAGCTTCCTTTAGA+GGG 0.523406 4:-17805782 MsG0480019290.01.T01:CDS
AAACAAACTGAAAGGCAACT+AGG 0.526347 4:+17801897 None:intergenic
TTAATCCTAGCACCAACATA+AGG 0.527524 4:+17801471 None:intergenic
GAAGCTTCCTTTAGAGGGAT+GGG 0.527598 4:-17805777 MsG0480019290.01.T01:CDS
GGGATACTTATTCAAACACT+TGG 0.528626 4:-17801798 MsG0480019290.01.T01:CDS
TTTCAGTTTGTTTAGAATGG+TGG 0.534606 4:-17801887 MsG0480019290.01.T01:CDS
GTGTACAAATTTGAATTGGT+TGG 0.535684 4:-17801396 MsG0480019290.01.T01:CDS
GAACCACTCCTTCAATTACT+AGG 0.537548 4:-17802284 MsG0480019290.01.T01:CDS
CACGTCCTTATGTTGGTGCT+AGG 0.539770 4:-17801476 MsG0480019290.01.T01:CDS
AAAACAAATAATTTGCATGC+AGG 0.540404 4:-17802627 MsG0480019290.01.T01:CDS
GCATCTTTGACAACAAGAAT+CGG 0.540575 4:-17801744 MsG0480019290.01.T01:CDS
GGAAGTGATGGTGAAAGGTT+GGG 0.542792 4:-17805689 MsG0480019290.01.T01:CDS
ACAACAAACTAGAAGGGCAT+TGG 0.547739 4:-17801295 MsG0480019290.01.T01:CDS
AGCTGTTCCTTGTGCTCGAG+AGG 0.550532 4:+17801698 None:intergenic
GGTTGTGGTGGTGTTATCCA+TGG 0.553702 4:-17805710 MsG0480019290.01.T01:CDS
AAGCTTATGGAGCCAAAAGA+TGG 0.555645 4:-17802391 MsG0480019290.01.T01:CDS
TGGAAGTGATGGTGAAAGGT+TGG 0.559427 4:-17805690 MsG0480019290.01.T01:CDS
CAAATAAACCACTTAAGCCA+TGG 0.566678 4:-17801983 MsG0480019290.01.T01:CDS
ATACTAATAAGTAAAACTGC+TGG 0.572346 4:+17802750 None:intergenic
TGACCTAGTAATTGAAGGAG+TGG 0.574927 4:+17802281 None:intergenic
GGCACCGCACGTCCTTATGT+TGG 0.578539 4:-17801483 MsG0480019290.01.T01:CDS
AATGGAATTTCCCGTGATGT+TGG 0.582664 4:+17802454 None:intergenic
GTGAAATTGTTCAAATAGGT+AGG 0.583257 4:-17805799 MsG0480019290.01.T01:CDS
GCTTGGTTTCGCCAACATCA+CGG 0.585034 4:-17802465 MsG0480019290.01.T01:CDS
TCATTCATTAGGGTCAGGAC+AGG 0.585035 4:-17801721 MsG0480019290.01.T01:CDS
TGGGCACAGACGGTATCATG+TGG 0.604090 4:-17801516 MsG0480019290.01.T01:CDS
GGACAGGCCTCTCGAGCACA+AGG 0.604907 4:-17801705 MsG0480019290.01.T01:CDS
TGTTGGCGAAACCAAGCGCT+AGG 0.606616 4:+17802471 None:intergenic
ACCATTCTAAACAAACTGAA+AGG 0.609022 4:+17801889 None:intergenic
AATTAGCAATTGGGCACAGA+CGG 0.609977 4:-17801526 MsG0480019290.01.T01:CDS
ATTGTAGAAACCGAAGTTTG+AGG 0.610503 4:+17801822 None:intergenic
AGGTTGGGTGGCATTGCTAA+AGG 0.612275 4:-17805674 MsG0480019290.01.T01:intron
TTGGAATTGAAACAAGTAGG+AGG 0.613939 4:+17802330 None:intergenic
AATATATTAACACCTTGCCA+TGG 0.617650 4:+17801966 None:intergenic
CATTCTCAAAGGCCTAACAA+TGG 0.621718 4:-17802435 MsG0480019290.01.T01:CDS
ACGGGAAATTCCATTCTCAA+AGG 0.622342 4:-17802446 MsG0480019290.01.T01:CDS
GGTGTTATCCATGGAAGTGA+TGG 0.622527 4:-17805701 MsG0480019290.01.T01:CDS
GGAATTGCAAGGCTAAGCAA+TGG 0.623533 4:+17801918 None:intergenic
AGTGATGGTGAAAGGTTGGG+TGG 0.633335 4:-17805686 MsG0480019290.01.T01:CDS
AAAGGCAACTAGGAATTGCA+AGG 0.634723 4:+17801907 None:intergenic
AAACCACTTAAGCCATGGCA+AGG 0.635302 4:-17801978 MsG0480019290.01.T01:CDS
AAATTGGAATTGAAACAAGT+AGG 0.636877 4:+17802327 None:intergenic
CCATAAGCTTGACAACAAAG+TGG 0.641623 4:+17802404 None:intergenic
CCTATTTGAACAATTTCACG+AGG 0.642854 4:+17805803 None:intergenic
TCCATGGAAGTGATGGTGAA+AGG 0.643212 4:-17805694 MsG0480019290.01.T01:CDS
AATGAGTTATCTGGTTGTGG+TGG 0.646607 4:-17805722 MsG0480019290.01.T01:CDS
TTGGGAACAACAAACTAGAA+GGG 0.647544 4:-17801301 MsG0480019290.01.T01:CDS
AGAAAGTGTAATCATCGATG+AGG 0.662222 4:-17801247 MsG0480019290.01.T01:CDS
GGGCACAGACGGTATCATGT+GGG 0.665099 4:-17801515 MsG0480019290.01.T01:CDS
AGCACCAACATAAGGACGTG+CGG 0.684194 4:+17801479 None:intergenic
AAACTTCGGTTTCTACAATG+GGG 0.693250 4:-17801818 MsG0480019290.01.T01:CDS
GGAAAAGCAGAGCTAGCTGG+CGG 0.712294 4:-17802497 MsG0480019290.01.T01:CDS
GGGGAAATTATTTACCAACG+AGG 0.739773 4:-17801601 MsG0480019290.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATCATAATATTATAGA+AGG - Chr4:17802243-17802262 MsG0480019290.01.T01:CDS 10.0%
!! AATAAAATATTCAAGAATTA+TGG + Chr4:17803435-17803454 None:intergenic 10.0%
!! ATAAAATATAGTAAGAAAAA+TGG + Chr4:17803573-17803592 None:intergenic 10.0%
!! ATAGGAAATATAAAATATAA+AGG - Chr4:17802100-17802119 MsG0480019290.01.T01:CDS 10.0%
!! CTTAAAATCTATAATTAAAT+CGG - Chr4:17801788-17801807 MsG0480019290.01.T01:CDS 10.0%
!! TAAAATATAGTAAGAAAAAT+GGG + Chr4:17803572-17803591 None:intergenic 10.0%
!! TACTAGTATATTAAATAATT+TGG + Chr4:17803337-17803356 None:intergenic 10.0%
!!! ATTAGTATTTTTTTTTTTGA+AGG - Chr4:17804298-17804317 MsG0480019290.01.T01:intron 10.0%
!!! TAAGCAAAAATTAATTTTTT+AGG + Chr4:17804078-17804097 None:intergenic 10.0%
!!! TGATTTTTAAGTTATTAAAA+AGG + Chr4:17803116-17803135 None:intergenic 10.0%
!! AAAATATAGTAAGAAAAATG+GGG + Chr4:17803571-17803590 None:intergenic 15.0%
!! AACTTAATATAAAGAAATGA+TGG + Chr4:17803518-17803537 None:intergenic 15.0%
!! AATAAAAAAAACAAATCCAA+CGG + Chr4:17802991-17803010 None:intergenic 15.0%
!! AATTCAATAAACATAACATT+AGG - Chr4:17805004-17805023 MsG0480019290.01.T01:intron 15.0%
!! ATCAAAAGAGATAATTTAAT+TGG + Chr4:17801657-17801676 None:intergenic 15.0%
!! ATTCAATAAACATAACATTA+GGG - Chr4:17805005-17805024 MsG0480019290.01.T01:intron 15.0%
!!! TCTTTTTTTTTATTACATAG+AGG + Chr4:17801753-17801772 None:intergenic 15.0%
!!! TTTTTTTTATTGGAATACAT+GGG - Chr4:17803000-17803019 MsG0480019290.01.T01:intron 15.0%
!! AAATATAGTAAGAAAAATGG+GGG + Chr4:17803570-17803589 None:intergenic 20.0%
!! ACTAGAAAATGTTGAAAATT+CGG - Chr4:17802025-17802044 MsG0480019290.01.T01:CDS 20.0%
!! AGAATGATATTTACATTTAG+CGG - Chr4:17803849-17803868 MsG0480019290.01.T01:intron 20.0%
!! ATAATAATCTCATATTGTTG+CGG - Chr4:17802643-17802662 MsG0480019290.01.T01:CDS 20.0%
!! ATACTTAAAATTAGGTGTAA+AGG - Chr4:17804958-17804977 MsG0480019290.01.T01:intron 20.0%
!! ATTTGTGTACAAATTTGAAT+TGG - Chr4:17805633-17805652 MsG0480019290.01.T01:intron 20.0%
!! GACAATGTATAATATATACA+AGG + Chr4:17801893-17801912 None:intergenic 20.0%
!! TACTTAAAATTAGGTGTAAA+GGG - Chr4:17804959-17804978 MsG0480019290.01.T01:intron 20.0%
!! TGAAATATACTTCATTAACT+CGG + Chr4:17802850-17802869 None:intergenic 20.0%
!!! AATTGACTTTATTAATGGAA+GGG + Chr4:17801836-17801855 None:intergenic 20.0%
!!! ATATTTGACTCAATTTTTCA+TGG - Chr4:17805085-17805104 MsG0480019290.01.T01:intron 20.0%
!!! ATCGTACTACATATTTTTTA+AGG + Chr4:17803623-17803642 None:intergenic 20.0%
!!! GATTAGTTATTTGATGTTTA+AGG + Chr4:17803174-17803193 None:intergenic 20.0%
!!! GTTGGATTTGTTTTTTTTAT+TGG - Chr4:17802990-17803009 MsG0480019290.01.T01:intron 20.0%
!!! GTTTTTTTTATTGGAATACA+TGG - Chr4:17802999-17803018 MsG0480019290.01.T01:intron 20.0%
!!! TCGTACTACATATTTTTTAA+GGG + Chr4:17803622-17803641 None:intergenic 20.0%
!!! TGTGTGCATTTTATTTAATT+GGG - Chr4:17805587-17805606 MsG0480019290.01.T01:intron 20.0%
!!! TTGTGTGCATTTTATTTAAT+TGG - Chr4:17805586-17805605 MsG0480019290.01.T01:intron 20.0%
! AAATTGGAATTGAAACAAGT+AGG + Chr4:17804709-17804728 None:intergenic 25.0%
! AATGAAGCAAAAATTGAAAC+TGG + Chr4:17805616-17805635 None:intergenic 25.0%
! ATACTAATAAGTAAAACTGC+TGG + Chr4:17804286-17804305 None:intergenic 25.0%
! ATTGAACTCAAATGTTAATG+AGG - Chr4:17802474-17802493 MsG0480019290.01.T01:CDS 25.0%
! ATTGATGCAATCATAGTAAT+TGG + Chr4:17804896-17804915 None:intergenic 25.0%
! ATTTCACATAACCCTAAAAT+CGG + Chr4:17805490-17805509 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG + Chr4:17804034-17804015 None:intergenic 25.0%
! CTAGAAAATGTTGAAAATTC+GGG - Chr4:17802026-17802045 MsG0480019290.01.T01:CDS 25.0%
! CTAGCTACATACTTAAAATT+AGG - Chr4:17804950-17804969 MsG0480019290.01.T01:intron 25.0%
! CTAGGAAATAATTTATTGGT+AGG + Chr4:17804934-17804953 None:intergenic 25.0%
! CTATAATTAAATCGGAGATT+CGG - Chr4:17801796-17801815 MsG0480019290.01.T01:CDS 25.0%
! GAAATATACTTCATTAACTC+GGG + Chr4:17802849-17802868 None:intergenic 25.0%
! GTAGCTAGGAAATAATTTAT+TGG + Chr4:17804938-17804957 None:intergenic 25.0%
! GTTATGTGAAATTAGCAATT+GGG - Chr4:17805498-17805517 MsG0480019290.01.T01:intron 25.0%
! GTTCTTAAGAAAGTTCTTAA+TGG + Chr4:17804857-17804876 None:intergenic 25.0%
! TAAACACAAGAAAACACAAA+TGG - Chr4:17803241-17803260 MsG0480019290.01.T01:intron 25.0%
! TAGATTGTTAATGTAGAATC+AGG + Chr4:17803943-17803962 None:intergenic 25.0%
! TATAATTAAATCGGAGATTC+GGG - Chr4:17801797-17801816 MsG0480019290.01.T01:CDS 25.0%
! TTTAGCCATAAAAGTGAAAT+TGG + Chr4:17804725-17804744 None:intergenic 25.0%
!! AAAACAAATAATTTGCATGC+AGG - Chr4:17804406-17804425 MsG0480019290.01.T01:intron 25.0%
!! AACAGCTATAATTGGAATTT+TGG - Chr4:17805351-17805370 MsG0480019290.01.T01:intron 25.0%
!! AGAAAAATACTTCCGATTTT+AGG - Chr4:17805475-17805494 MsG0480019290.01.T01:intron 25.0%
!! AGAGCAATTGACTTTATTAA+TGG + Chr4:17801841-17801860 None:intergenic 25.0%
!! CAATTGACTTTATTAATGGA+AGG + Chr4:17801837-17801856 None:intergenic 25.0%
!! GAAAAATACTTCCGATTTTA+GGG - Chr4:17805476-17805495 MsG0480019290.01.T01:intron 25.0%
!! TACATGGGTTATTGAAAAAA+AGG - Chr4:17803015-17803034 MsG0480019290.01.T01:intron 25.0%
!! TGAGTAAAATTCTTTTGCAT+AGG - Chr4:17802082-17802101 MsG0480019290.01.T01:CDS 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG - Chr4:17804088-17804107 MsG0480019290.01.T01:intron 25.0%
!!! ACTAGAGTTCAATTTTTAAG+TGG - Chr4:17802525-17802544 MsG0480019290.01.T01:CDS 25.0%
!!! AGTTTCTTGTTTTTGTATGA+TGG - Chr4:17805687-17805706 MsG0480019290.01.T01:CDS 25.0%
!!! ATACATTGATTCAAACTGAT+TGG - Chr4:17805713-17805732 MsG0480019290.01.T01:CDS 25.0%
!!! ATTTTAGTGAGGAAAAATTG+GGG - Chr4:17805412-17805431 MsG0480019290.01.T01:intron 25.0%
!!! CAATTCCAATTTCACTTTTA+TGG - Chr4:17804717-17804736 MsG0480019290.01.T01:intron 25.0%
!!! CTAATTTTAAGTATGTAGCT+AGG + Chr4:17804952-17804971 None:intergenic 25.0%
!!! GATTTTAGTGAGGAAAAATT+GGG - Chr4:17805411-17805430 MsG0480019290.01.T01:intron 25.0%
!!! TACATTGATTCAAACTGATT+GGG - Chr4:17805714-17805733 MsG0480019290.01.T01:CDS 25.0%
AAACATAACATTAGGGTTGT+TGG - Chr4:17805012-17805031 MsG0480019290.01.T01:intron 30.0%
AAACCCAAAATCTGATTCAT+GGG + Chr4:17803275-17803294 None:intergenic 30.0%
AAAGATGCACTAAGTGAATA+TGG + Chr4:17805277-17805296 None:intergenic 30.0%
AAAGATTGAGCTAATAGTTC+AGG + Chr4:17804827-17804846 None:intergenic 30.0%
AATATATTAACACCTTGCCA+TGG + Chr4:17805070-17805089 None:intergenic 30.0%
ACCATTCTAAACAAACTGAA+AGG + Chr4:17805147-17805166 None:intergenic 30.0%
AGAACTTTCTTAAGAACTCA+AGG - Chr4:17804860-17804879 MsG0480019290.01.T01:intron 30.0%
AGTCTTAACTCTAATTGTCT+AGG - Chr4:17803652-17803671 MsG0480019290.01.T01:intron 30.0%
ATAATTAAATCGGAGATTCG+GGG - Chr4:17801798-17801817 MsG0480019290.01.T01:CDS 30.0%
ATCTAAAAATATACTCCCTC+TGG - Chr4:17803958-17803977 MsG0480019290.01.T01:intron 30.0%
ATTAGGCTTGTCATTGTTAT+GGG + Chr4:17804470-17804489 None:intergenic 30.0%
ATTCGTCACATTATAGGAAT+CGG + Chr4:17803809-17803828 None:intergenic 30.0%
ATTGAATGTGAATTCTCTAG+TGG - Chr4:17801440-17801459 MsG0480019290.01.T01:CDS 30.0%
GGTTATGTGAAATTAGCAAT+TGG - Chr4:17805497-17805516 MsG0480019290.01.T01:intron 30.0%
GTCCTTTCTAATAATGAGAA+CGG - Chr4:17801471-17801490 MsG0480019290.01.T01:CDS 30.0%
GTGAAATTGTTCAAATAGGT+AGG - Chr4:17801234-17801253 MsG0480019290.01.T01:CDS 30.0%
GTGTACAAATTTGAATTGGT+TGG - Chr4:17805637-17805656 MsG0480019290.01.T01:intron 30.0%
TATTAACAACGTAGCTAAGA+GGG + Chr4:17803772-17803791 None:intergenic 30.0%
TGCTTATAATAATGACCAGA+GGG + Chr4:17803976-17803995 None:intergenic 30.0%
TTATGTACTTTGTCATGAGT+TGG - Chr4:17803140-17803159 MsG0480019290.01.T01:intron 30.0%
TTATTAACAACGTAGCTAAG+AGG + Chr4:17803773-17803792 None:intergenic 30.0%
TTCCGTTCTCATTATTAGAA+AGG + Chr4:17801476-17801495 None:intergenic 30.0%
TTGACCTAGAATACATCATT+AGG + Chr4:17804487-17804506 None:intergenic 30.0%
TTGCTTATAATAATGACCAG+AGG + Chr4:17803977-17803996 None:intergenic 30.0%
! AGAAATGATGGAAGCTTTAA+AGG + Chr4:17803506-17803525 None:intergenic 30.0%
! ATCAATAATTTGTACCTCGT+TGG + Chr4:17805449-17805468 None:intergenic 30.0%
! ATGGGTTATTGAAAAAAAGG+AGG - Chr4:17803018-17803037 MsG0480019290.01.T01:intron 30.0%
! ATTATCTCAATGCTTTTCCT+TGG - Chr4:17804506-17804525 MsG0480019290.01.T01:intron 30.0%
! CAAGGTATTAGCATATTGAT+TGG + Chr4:17801586-17801605 None:intergenic 30.0%
! GAGGTACTATTATATGATGA+AGG + Chr4:17803879-17803898 None:intergenic 30.0%
! TGAGCTTAACTCATTTTGTA+GGG + Chr4:17801915-17801934 None:intergenic 30.0%
! TTGACTCAATTTTTCATGGT+TGG - Chr4:17805089-17805108 MsG0480019290.01.T01:intron 30.0%
! TTTATGATGACGTCATTACA+TGG - Chr4:17803588-17803607 MsG0480019290.01.T01:intron 30.0%
! TTTCAGTTTGTTTAGAATGG+TGG - Chr4:17805146-17805165 MsG0480019290.01.T01:intron 30.0%
! TTTTAGTGAGGAAAAATTGG+GGG - Chr4:17805413-17805432 MsG0480019290.01.T01:intron 30.0%
!! AATCTCGTGAGATTTGTTTT+CGG - Chr4:17803075-17803094 MsG0480019290.01.T01:intron 30.0%
!! AATTTGAATTGGTTGGTTTG+TGG - Chr4:17805644-17805663 MsG0480019290.01.T01:intron 30.0%
!! CGATTTTAGTGAGGAAAAAT+TGG - Chr4:17805410-17805429 MsG0480019290.01.T01:intron 30.0%
!! GAGATAATGCTATTTCTTTG+TGG - Chr4:17805175-17805194 MsG0480019290.01.T01:intron 30.0%
!! TTATTGGATCGATTTTAGTG+AGG - Chr4:17805401-17805420 MsG0480019290.01.T01:intron 30.0%
!! TTCACTTTTATGGCTAAACA+TGG - Chr4:17804727-17804746 MsG0480019290.01.T01:intron 30.0%
AAAAAAACAAATCCAACGGC+TGG + Chr4:17802987-17803006 None:intergenic 35.0%
AAACAAACTGAAAGGCAACT+AGG + Chr4:17805139-17805158 None:intergenic 35.0%
AAGTAAAACTGCTGGCAAAA+GGG + Chr4:17804278-17804297 None:intergenic 35.0%
ACAAGAATCGGTCATTCATT+AGG - Chr4:17805301-17805320 MsG0480019290.01.T01:intron 35.0%
ACACTATGAAGAACAAGACA+TGG + Chr4:17803408-17803427 None:intergenic 35.0%
ACGTAGATATTAAGCCTTGA+TGG - Chr4:17802809-17802828 MsG0480019290.01.T01:intron 35.0%
ACTGTACAATGAGAACACAA+AGG - Chr4:17803200-17803219 MsG0480019290.01.T01:intron 35.0%
ATAATAGTACCTCCTCTCTA+GGG - Chr4:17803886-17803905 MsG0480019290.01.T01:intron 35.0%
ATAGTGCAAAATAGCCATGT+GGG + Chr4:17803049-17803068 None:intergenic 35.0%
ATTCTCAAAGGCCTAACAAT+GGG - Chr4:17804599-17804618 MsG0480019290.01.T01:intron 35.0%
ATTGGGAACAACAAACTAGA+AGG - Chr4:17805731-17805750 MsG0480019290.01.T01:CDS 35.0%
CAAATAAACCACTTAAGCCA+TGG - Chr4:17805050-17805069 MsG0480019290.01.T01:intron 35.0%
CAAGAATCGGTCATTCATTA+GGG - Chr4:17805302-17805321 MsG0480019290.01.T01:intron 35.0%
CAAGCCTAATGATGTATTCT+AGG - Chr4:17804480-17804499 MsG0480019290.01.T01:intron 35.0%
CATGAAATGAGCAACTCTAA+TGG + Chr4:17804254-17804273 None:intergenic 35.0%
CATTAGAGTTGCTCATTTCA+TGG - Chr4:17804252-17804271 MsG0480019290.01.T01:intron 35.0%
CATTAGGCTTGTCATTGTTA+TGG + Chr4:17804471-17804490 None:intergenic 35.0%
CCTATTTGAACAATTTCACG+AGG + Chr4:17801233-17801252 None:intergenic 35.0%
CCTCGTGAAATTGTTCAAAT+AGG - Chr4:17801230-17801249 MsG0480019290.01.T01:CDS 35.0%
CTCATTCACAACAATGAAGA+TGG + Chr4:17803298-17803317 None:intergenic 35.0%
GAAACCCAAAATCTGATTCA+TGG + Chr4:17803276-17803295 None:intergenic 35.0%
GAACTATCCACAATGATCTT+GGG + Chr4:17802777-17802796 None:intergenic 35.0%
GCATCTTTGACAACAAGAAT+CGG - Chr4:17805289-17805308 MsG0480019290.01.T01:intron 35.0%
GGGATACTTATTCAAACACT+TGG - Chr4:17805235-17805254 MsG0480019290.01.T01:intron 35.0%
GGTTATTGAAAAAAAGGAGG+TGG - Chr4:17803021-17803040 MsG0480019290.01.T01:intron 35.0%
GTCACCATGAAATGACAAAT+TGG + Chr4:17801985-17802004 None:intergenic 35.0%
TAAGTAAAACTGCTGGCAAA+AGG + Chr4:17804279-17804298 None:intergenic 35.0%
TAATCTCATATTGTTGCGGT+CGG - Chr4:17802647-17802666 MsG0480019290.01.T01:CDS 35.0%
TATAATAGTACCTCCTCTCT+AGG - Chr4:17803885-17803904 MsG0480019290.01.T01:intron 35.0%
TCCCTAAAGCTATGCTATAT+AGG + Chr4:17801402-17801421 None:intergenic 35.0%
TCCTATAATGTGACGAATCA+AGG - Chr4:17803811-17803830 MsG0480019290.01.T01:intron 35.0%
TGTAGAGGTAATGAGTTATC+TGG - Chr4:17801302-17801321 MsG0480019290.01.T01:CDS 35.0%
TGTTGCTGGATTCTCTTTAA+CGG - Chr4:17805815-17805834 MsG0480019290.01.T01:CDS 35.0%
TTAATCCTAGCACCAACATA+AGG + Chr4:17805565-17805584 None:intergenic 35.0%
TTCGTCACATTATAGGAATC+GGG + Chr4:17803808-17803827 None:intergenic 35.0%
TTGGAATTGAAACAAGTAGG+AGG + Chr4:17804706-17804725 None:intergenic 35.0%
TTGGGAACAACAAACTAGAA+GGG - Chr4:17805732-17805751 MsG0480019290.01.T01:CDS 35.0%
TTTGTCCGAGGTTTAAACTT+CGG - Chr4:17801866-17801885 MsG0480019290.01.T01:CDS 35.0%
! AATACGGATGACTTTTGTAG+AGG - Chr4:17801287-17801306 MsG0480019290.01.T01:CDS 35.0%
! ACCTTGATTCGTCACATTAT+AGG + Chr4:17803815-17803834 None:intergenic 35.0%
! AGAAAGTGTAATCATCGATG+AGG - Chr4:17805786-17805805 MsG0480019290.01.T01:CDS 35.0%
! ATGCCCATGAATCAGATTTT+GGG - Chr4:17803269-17803288 MsG0480019290.01.T01:intron 35.0%
! ATTTATGAGAGCGTGAGATT+TGG - Chr4:17803686-17803705 MsG0480019290.01.T01:intron 35.0%
! GCCTATATAGCATAGCTTTA+GGG - Chr4:17801398-17801417 MsG0480019290.01.T01:CDS 35.0%
! GCCTTTCAGTTTGTTTAGAA+TGG - Chr4:17805143-17805162 MsG0480019290.01.T01:intron 35.0%
! GTGAGCTTAACTCATTTTGT+AGG + Chr4:17801916-17801935 None:intergenic 35.0%
! TATGCCCATGAATCAGATTT+TGG - Chr4:17803268-17803287 MsG0480019290.01.T01:intron 35.0%
! TTTATGAGAGCGTGAGATTT+GGG - Chr4:17803687-17803706 MsG0480019290.01.T01:intron 35.0%
!! ACATGGCTATTTTGCACTAT+CGG - Chr4:17803049-17803068 MsG0480019290.01.T01:intron 35.0%
!! AGAGTGTTCTGAAAAGTGTT+TGG + Chr4:17804679-17804698 None:intergenic 35.0%
!! ATCTCGTGAGATTTGTTTTC+GGG - Chr4:17803076-17803095 MsG0480019290.01.T01:intron 35.0%
!! GTTTAGAACTGACCATCTTT+TGG + Chr4:17804657-17804676 None:intergenic 35.0%
!! TAGCATATTGATTGGCTTCA+CGG + Chr4:17801578-17801597 None:intergenic 35.0%
!!! TTGCTCTTTTTTTTTGTCCG+AGG - Chr4:17801854-17801873 MsG0480019290.01.T01:CDS 35.0%
AAAGGCAACTAGGAATTGCA+AGG + Chr4:17805129-17805148 None:intergenic 40.0%
AACTTAACCCATCCCTCTAA+AGG + Chr4:17801266-17801285 None:intergenic 40.0%
AAGCTTATGGAGCCAAAAGA+TGG - Chr4:17804642-17804661 MsG0480019290.01.T01:intron 40.0%
AAGGTCCGAAGTTTAAACCT+CGG + Chr4:17801874-17801893 None:intergenic 40.0%
AATGAGTTATCTGGTTGTGG+TGG - Chr4:17801311-17801330 MsG0480019290.01.T01:CDS 40.0%
AATGGAATTTCCCGTGATGT+TGG + Chr4:17804582-17804601 None:intergenic 40.0%
AATTAGCAATTGGGCACAGA+CGG - Chr4:17805507-17805526 MsG0480019290.01.T01:intron 40.0%
ACATTCTATGATACTCCCTC+CGG + Chr4:17804110-17804129 None:intergenic 40.0%
ACGGGAAATTCCATTCTCAA+AGG - Chr4:17804587-17804606 MsG0480019290.01.T01:intron 40.0%
ATTACATAGAGGCCGAAAGT+CGG + Chr4:17801742-17801761 None:intergenic 40.0%
CATTCTCAAAGGCCTAACAA+TGG - Chr4:17804598-17804617 MsG0480019290.01.T01:intron 40.0%
CCATAAGCTTGACAACAAAG+TGG + Chr4:17804632-17804651 None:intergenic 40.0%
CCATGAAATGACAAATTGGC+TGG + Chr4:17801981-17802000 None:intergenic 40.0%
CGAACTATCCACAATGATCT+TGG + Chr4:17802778-17802797 None:intergenic 40.0%
CGCCTATATAGCATAGCTTT+AGG - Chr4:17801397-17801416 MsG0480019290.01.T01:CDS 40.0%
GAACCACTCCTTCAATTACT+AGG - Chr4:17804749-17804768 MsG0480019290.01.T01:intron 40.0%
GATAGTGCAAAATAGCCATG+TGG + Chr4:17803050-17803069 None:intergenic 40.0%
GCACAAGGAACAGCTATAAT+TGG - Chr4:17805343-17805362 MsG0480019290.01.T01:intron 40.0%
GGGGAAATTATTTACCAACG+AGG - Chr4:17805432-17805451 MsG0480019290.01.T01:intron 40.0%
GGTAATGAGTTATCTGGTTG+TGG - Chr4:17801308-17801327 MsG0480019290.01.T01:CDS 40.0%
GGTCTTGACCTAGTAATTGA+AGG + Chr4:17804760-17804779 None:intergenic 40.0%
TAATAATGAGAACGGAAGCC+TGG - Chr4:17801479-17801498 MsG0480019290.01.T01:CDS 40.0%
TGACCTAGTAATTGAAGGAG+TGG + Chr4:17804755-17804774 None:intergenic 40.0%
TGCTTATAATAGTGACCGGA+GGG - Chr4:17804092-17804111 MsG0480019290.01.T01:intron 40.0%
TGTTAACCCTCTTACTCCTA+CGG + Chr4:17802612-17802631 None:intergenic 40.0%
TTATTAAGACCCCTTACCGT+AGG - Chr4:17802593-17802612 MsG0480019290.01.T01:CDS 40.0%
TTGCTTATAATAGTGACCGG+AGG - Chr4:17804091-17804110 MsG0480019290.01.T01:intron 40.0%
TTTCCATAAGTTCCCTAGAG+AGG + Chr4:17803901-17803920 None:intergenic 40.0%
! ACAACAAACTAGAAGGGCAT+TGG - Chr4:17805738-17805757 MsG0480019290.01.T01:CDS 40.0%
! CAGTTTGTTTAGAATGGTGG+TGG - Chr4:17805149-17805168 MsG0480019290.01.T01:intron 40.0%
! CATTGTTAGGCCTTTGAGAA+TGG + Chr4:17804600-17804619 None:intergenic 40.0%
! CCACTTTGTTGTCAAGCTTA+TGG - Chr4:17804629-17804648 MsG0480019290.01.T01:intron 40.0%
! CCAGCCAATTTGTCATTTCA+TGG - Chr4:17801978-17801997 MsG0480019290.01.T01:CDS 40.0%
! CGAGTATCTGAAGTTTGTCA+AGG + Chr4:17801604-17801623 None:intergenic 40.0%
! CTGTCTTTTTCTCCGACTTT+CGG - Chr4:17801727-17801746 MsG0480019290.01.T01:CDS 40.0%
! CTTGGAGTTTCGGCTTTTAT+TGG - Chr4:17805385-17805404 MsG0480019290.01.T01:intron 40.0%
! GATTTGTCGATTGCTTGAGT+TGG - Chr4:17801524-17801543 MsG0480019290.01.T01:CDS 40.0%
! GGAGTTGGCTCAAAAAACAA+CGG - Chr4:17805759-17805778 MsG0480019290.01.T01:CDS 40.0%
! GTGCAACTTTTGTGACACTA+GGG + Chr4:17804781-17804800 None:intergenic 40.0%
! TGTGCAACTTTTGTGACACT+AGG + Chr4:17804782-17804801 None:intergenic 40.0%
!! AAGGGTATTGCATTAGCAAC+TGG - Chr4:17804977-17804996 MsG0480019290.01.T01:intron 40.0%
!! ATTTTGGTCGCGTTTCTACT+TGG - Chr4:17805367-17805386 MsG0480019290.01.T01:intron 40.0%
!! CATGGCTATTTTGCACTATC+GGG - Chr4:17803050-17803069 MsG0480019290.01.T01:intron 40.0%
!! GGGATGGGTTAAGTTGAATA+CGG - Chr4:17801271-17801290 MsG0480019290.01.T01:CDS 40.0%
!! GTATCATGTGGGATTTTAGC+TGG - Chr4:17805529-17805548 MsG0480019290.01.T01:intron 40.0%
AAACCACTTAAGCCATGGCA+AGG - Chr4:17805055-17805074 MsG0480019290.01.T01:intron 45.0%
ACAACCAATGAGCTAAACGC+GGG + Chr4:17801707-17801726 None:intergenic 45.0%
ACCTTTCACCATCACTTCCA+TGG + Chr4:17801343-17801362 None:intergenic 45.0%
ACGATACAAATCATCCCGAC+AGG - Chr4:17802947-17802966 MsG0480019290.01.T01:intron 45.0%
AGGTAGGAAGCTTCCTTTAG+AGG - Chr4:17801250-17801269 MsG0480019290.01.T01:CDS 45.0%
ATCCACAATGATCTTGGGCT+CGG + Chr4:17802772-17802791 None:intergenic 45.0%
ATCGGTCATTCATTAGGGTC+AGG - Chr4:17805307-17805326 MsG0480019290.01.T01:intron 45.0%
CAAAGGCCTAACAATGGGAA+TGG - Chr4:17804604-17804623 MsG0480019290.01.T01:intron 45.0%
CAACCAATGATCTACCAACC+AGG + Chr4:17801500-17801519 None:intergenic 45.0%
CGCGTTTCTACTTGGAGTTT+CGG - Chr4:17805375-17805394 MsG0480019290.01.T01:intron 45.0%
CTTCTTAATGTGAGCGTGTG+TGG + Chr4:17802678-17802697 None:intergenic 45.0%
GACAACCAATGAGCTAAACG+CGG + Chr4:17801708-17801727 None:intergenic 45.0%
GGAATTGCAAGGCTAAGCAA+TGG + Chr4:17805118-17805137 None:intergenic 45.0%
GGTAGGAAGCTTCCTTTAGA+GGG - Chr4:17801251-17801270 MsG0480019290.01.T01:CDS 45.0%
GTGGATCCATTCCCATTGTT+AGG + Chr4:17804613-17804632 None:intergenic 45.0%
TCATTCATTAGGGTCAGGAC+AGG - Chr4:17805312-17805331 MsG0480019290.01.T01:intron 45.0%
! ATGCTTTTCCTTGGTCGACA+AGG - Chr4:17804515-17804534 MsG0480019290.01.T01:intron 45.0%
! GAAGCTTCCTTTAGAGGGAT+GGG - Chr4:17801256-17801275 MsG0480019290.01.T01:CDS 45.0%
! GGAAGTGATGGTGAAAGGTT+GGG - Chr4:17801344-17801363 MsG0480019290.01.T01:CDS 45.0%
! GGTGTTATCCATGGAAGTGA+TGG - Chr4:17801332-17801351 MsG0480019290.01.T01:CDS 45.0%
! TCCATGGAAGTGATGGTGAA+AGG - Chr4:17801339-17801358 MsG0480019290.01.T01:CDS 45.0%
! TGGAAGTGATGGTGAAAGGT+TGG - Chr4:17801343-17801362 MsG0480019290.01.T01:CDS 45.0%
! TGGTGACGTGTAGTATCAGT+AGG - Chr4:17801998-17802017 MsG0480019290.01.T01:CDS 45.0%
! TGGTTTGTGGTGTGGAATGT+TGG - Chr4:17805657-17805676 MsG0480019290.01.T01:intron 45.0%
! TGTCGGGATGATTTGTATCG+TGG + Chr4:17802948-17802967 None:intergenic 45.0%
!! AACTAGAAGGGCATTGGAGT+TGG - Chr4:17805744-17805763 MsG0480019290.01.T01:CDS 45.0%
!! AAGCCTGGTTGGTAGATCAT+TGG - Chr4:17801494-17801513 MsG0480019290.01.T01:CDS 45.0%
!! ATTGCTTGAGTTGGAGTGTG+AGG - Chr4:17801533-17801552 MsG0480019290.01.T01:CDS 45.0%
!! GAATTGGTTGGTTTGTGGTG+TGG - Chr4:17805649-17805668 MsG0480019290.01.T01:intron 45.0%
AAAAGGAGGTGGTACCCACA+TGG - Chr4:17803032-17803051 MsG0480019290.01.T01:intron 50.0%
AATGAGAACGGAAGCCTGGT+TGG - Chr4:17801483-17801502 MsG0480019290.01.T01:CDS 50.0%
ACACCTTGCCATGGCTTAAG+TGG + Chr4:17805061-17805080 None:intergenic 50.0%
ACCCTCTTACTCCTACGGTA+AGG + Chr4:17802607-17802626 None:intergenic 50.0%
AGCACCAACATAAGGACGTG+CGG + Chr4:17805557-17805576 None:intergenic 50.0%
AGGTTGGGTGGCATTGCTAA+AGG - Chr4:17801359-17801378 MsG0480019290.01.T01:CDS 50.0%
CAAATCTTCGGGAACCTGTC+GGG + Chr4:17802964-17802983 None:intergenic 50.0%
CAACCAATGAGCTAAACGCG+GGG + Chr4:17801706-17801725 None:intergenic 50.0%
CAAGGAAAAGCAGAGCTAGC+TGG - Chr4:17804533-17804552 MsG0480019290.01.T01:intron 50.0%
CCATAAGTTCCCTAGAGAGG+AGG + Chr4:17803898-17803917 None:intergenic 50.0%
CCCTCTTACTCCTACGGTAA+GGG + Chr4:17802606-17802625 None:intergenic 50.0%
CCCTTACCGTAGGAGTAAGA+GGG - Chr4:17802603-17802622 MsG0480019290.01.T01:CDS 50.0%
CCTCTTACTCCTACGGTAAG+GGG + Chr4:17802605-17802624 None:intergenic 50.0%
CTTGGTTTCGCCAACATCAC+GGG - Chr4:17804569-17804588 MsG0480019290.01.T01:intron 50.0%
GCAAATCTTCGGGAACCTGT+CGG + Chr4:17802965-17802984 None:intergenic 50.0%
GCTTGGTTTCGCCAACATCA+CGG - Chr4:17804568-17804587 MsG0480019290.01.T01:intron 50.0%
TACCGAGCCCAAGATCATTG+TGG - Chr4:17802767-17802786 MsG0480019290.01.T01:CDS 50.0%
TCCAACGGCTGGCAAATCTT+CGG + Chr4:17802976-17802995 None:intergenic 50.0%
TTCCTGCATTCACGCCATCA+AGG + Chr4:17802826-17802845 None:intergenic 50.0%
! AGTGATGGTGAAAGGTTGGG+TGG - Chr4:17801347-17801366 MsG0480019290.01.T01:CDS 50.0%
! CACGTCCTTATGTTGGTGCT+AGG - Chr4:17805557-17805576 MsG0480019290.01.T01:intron 50.0%
! CCTCCTCTCTAGGGAACTTA+TGG - Chr4:17803895-17803914 MsG0480019290.01.T01:intron 50.0%
! CGATGAGGAAAGTGTGTTGC+TGG - Chr4:17805801-17805820 MsG0480019290.01.T01:CDS 50.0%
! GGAAGCTTCCTTTAGAGGGA+TGG - Chr4:17801255-17801274 MsG0480019290.01.T01:CDS 50.0%
!! CTGCTTTTCCTTGTCGACCA+AGG + Chr4:17804526-17804545 None:intergenic 50.0%
!! GGTTGTGGTGGTGTTATCCA+TGG - Chr4:17801323-17801342 MsG0480019290.01.T01:CDS 50.0%
AGCTGTTCCTTGTGCTCGAG+AGG + Chr4:17805338-17805357 None:intergenic 55.0%
CCAACGGCTGGCAAATCTTC+GGG + Chr4:17802975-17802994 None:intergenic 55.0%
CCCCTTACCGTAGGAGTAAG+AGG - Chr4:17802602-17802621 MsG0480019290.01.T01:CDS 55.0%
GGAAAAGCAGAGCTAGCTGG+CGG - Chr4:17804536-17804555 MsG0480019290.01.T01:intron 55.0%
GGGCACAGACGGTATCATGT+GGG - Chr4:17805518-17805537 MsG0480019290.01.T01:intron 55.0%
TGGGCACAGACGGTATCATG+TGG - Chr4:17805517-17805536 MsG0480019290.01.T01:intron 55.0%
TGTTGGCGAAACCAAGCGCT+AGG + Chr4:17804565-17804584 None:intergenic 55.0%
TTAGACACACGCACGCGCAT+AGG + Chr4:17803366-17803385 None:intergenic 55.0%
! TTGCCCCGCGTTTAGCTCAT+TGG - Chr4:17801700-17801719 MsG0480019290.01.T01:CDS 55.0%
!! AGCCTTGATGGCGTGAATGC+AGG - Chr4:17802821-17802840 MsG0480019290.01.T01:intron 55.0%
CCCGAAGATTTGCCAGCCGT+TGG - Chr4:17802972-17802991 MsG0480019290.01.T01:intron 60.0%
GGCACCGCACGTCCTTATGT+TGG - Chr4:17805550-17805569 MsG0480019290.01.T01:intron 60.0%
GGACAGGCCTCTCGAGCACA+AGG - Chr4:17805328-17805347 MsG0480019290.01.T01:intron 65.0%
GCTGGCGGTTGCCTAGCGCT+TGG - Chr4:17804551-17804570 MsG0480019290.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 17801221 17805834 17801221 ID=MsG0480019290.01;Name=MsG0480019290.01
Chr4 mRNA 17801221 17805834 17801221 ID=MsG0480019290.01.T01;Parent=MsG0480019290.01;Name=MsG0480019290.01.T01;_AED=0.14;_eAED=0.14;_QI=0|0|0|0.5|0|0.5|2|0|578
Chr4 exon 17805675 17805834 17805675 ID=MsG0480019290.01.T01:exon:4631;Parent=MsG0480019290.01.T01
Chr4 exon 17801221 17802797 17801221 ID=MsG0480019290.01.T01:exon:4630;Parent=MsG0480019290.01.T01
Chr4 CDS 17805675 17805834 17805675 ID=MsG0480019290.01.T01:cds;Parent=MsG0480019290.01.T01
Chr4 CDS 17801221 17802797 17801221 ID=MsG0480019290.01.T01:cds;Parent=MsG0480019290.01.T01
Gene Sequence

>MsG0480019290.01.T01

ATGGCTTCACCTCGTGAAATTGTTCAAATAGGTAGGAAGCTTCCTTTAGAGGGATGGGTTAAGTTGAATACGGATGACTTTTGTAGAGGTAATGAGTTATCTGGTTGTGGTGGTGTTATCCATGGAAGTGATGGTGAAAGGTTGGGTGGCATTGCTAAAGAGTTGCTCATTTCATGGCCCTTTTGCCAGCAGTTTTACTTATTAGTATTTTTTTTTTTGAAGGATTTAAGTAGTTTCTTCTTGATGAACAATAACACAATAGTAATTAGTAAAATTACAATACTTTTCGTTGAAATATTTGAAATAACAAAACAAATAATTTGCATGCAGGTGAAAGAAGAGTTGCGATCGCTCTCAAAGATTGCGTGTCCCATAACAATGACAAGCCTAATGATGTATTCTAGGTCAATTATCTCAATGCTTTTCCTTGGTCGACAAGGAAAAGCAGAGCTAGCTGGCGGTTGCCTAGCGCTTGGTTTCGCCAACATCACGGGAAATTCCATTCTCAAAGGCCTAACAATGGGAATGGATCCACTTTGTTGTCAAGCTTATGGAGCCAAAAGATGGTCAGTTCTAAACCAAACACTTTTCAGAACACTCTCTCTCCTCCTACTTGTTTCAATTCCAATTTCACTTTTATGGCTAAACATGGAACCACTCCTTCAATTACTAGGTCAAGACCCTAGTGTCACAAAAGTTGCACAAATTTACATGCTCTACTCAATTCCTGAACTATTAGCTCAATCTTTTCTCAATCCATTAAGAACTTTCTTAAGAACTCAAGGCTTAACAACACCAATTACTATGATTGCATCAATTGCAGCACTATTACACCTACCAATAAATTATTTCCTAGCTACATACTTAAAATTAGGTGTAAAGGGTATTGCATTAGCAACTGGAATGAATTCAATAAACATAACATTAGGGTTGTTGGTTTATATTGTTTTCTCAAATAAACCACTTAAGCCATGGCAAGGTGTTAATATATTTGACTCAATTTTTCATGGTTGGAAACCATTGCTTAGCCTTGCAATTCCTAGTTGCCTTTCAGTTTGTTTAGAATGGTGGTGGTATGAGATAATGCTATTTCTTTGTGGTTTATTACGTAACCCTCAAACTTCGGTTTCTACAATGGGGATACTTATTCAAACACTTGGTTTTCTGTATATTTTTCCATATTCACTTAGTGCATCTTTGACAACAAGAATCGGTCATTCATTAGGGTCAGGACAGGCCTCTCGAGCACAAGGAACAGCTATAATTGGAATTTTGGTCGCGTTTCTACTTGGAGTTTCGGCTTTTATTGGATCGATTTTAGTGAGGAAAAATTGGGGGAAATTATTTACCAACGAGGTACAAATTATTGATATGATAAGAAAAATACTTCCGATTTTAGGGTTATGTGAAATTAGCAATTGGGCACAGACGGTATCATGTGGGATTTTAGCTGGCACCGCACGTCCTTATGTTGGTGCTAGGATTAATTTGTGTGCATTTTATTTAATTGGGTTACCAGTTTCAATTTTTGCTTCATTTGTGTACAAATTTGAATTGGTTGGTTTGTGGTGTGGAATGTTGGCAGCACAAGTTTCTTGTTTTTGTATGATGGTGTATACATTGATTCAAACTGATTGGGAACAACAAACTAGAAGGGCATTGGAGTTGGCTCAAAAAACAACGGAGCAAGAAAGTGTAATCATCGATGAGGAAAGTGTGTTGCTGGATTCTCTTTAA
Protein sequence

>MsG0480019290.01.T01

MASPREIVQIGRKLPLEGWVKLNTDDFCRGNELSGCGGVIHGSDGERLGGIAKELLISWPFCQQFYLLVFFFLKDLSSFFLMNNNTIVISKITILFVEIFEITKQIICMQVKEELRSLSKIACPITMTSLMMYSRSIISMLFLGRQGKAELAGGCLALGFANITGNSILKGLTMGMDPLCCQAYGAKRWSVLNQTLFRTLSLLLLVSIPISLLWLNMEPLLQLLGQDPSVTKVAQIYMLYSIPELLAQSFLNPLRTFLRTQGLTTPITMIASIAALLHLPINYFLATYLKLGVKGIALATGMNSINITLGLLVYIVFSNKPLKPWQGVNIFDSIFHGWKPLLSLAIPSCLSVCLEWWWYEIMLFLCGLLRNPQTSVSTMGILIQTLGFLYIFPYSLSASLTTRIGHSLGSGQASRAQGTAIIGILVAFLLGVSAFIGSILVRKNWGKLFTNEVQIIDMIRKILPILGLCEISNWAQTVSCGILAGTARPYVGARINLCAFYLIGLPVSIFASFVYKFELVGLWCGMLAAQVSCFCMMVYTLIQTDWEQQTRRALELAQKTTEQESVIIDEESVLLDSL*