Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480020529.01.T01 | XP_013455733.1 | 68.05 | 241 | 53 | 6 | 1 | 224 | 1 | 234 | 1.96E-95 | 288 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480020529.01.T01 | Q4PSU4 | 29.94 | 167 | 97 | 4 | 7 | 159 | 61 | 221 | 1.65E-13 | 70.9 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480020529.01.T01 | A0A072UJ33 | 68.050 | 241 | 53 | 6 | 1 | 224 | 1 | 234 | 9.38e-96 | 288 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|---|---|
MsG0480020529.01 | MsG0680034864.01 | PPI |
MsG0180001737.01 | MsG0480020529.01 | PPI |
MsG0480020529.01 | MsG0480021186.01 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480020529.01.T01 | MTR_4g051538 | 68.050 | 241 | 53 | 6 | 1 | 224 | 1 | 234 | 2.38e-99 | 288 |
MsG0480020529.01.T01 | MTR_3g104630 | 43.750 | 128 | 48 | 5 | 106 | 210 | 16 | 142 | 6.69e-22 | 88.2 |
MsG0480020529.01.T01 | MTR_3g052920 | 26.943 | 193 | 129 | 2 | 1 | 183 | 1 | 191 | 3.88e-16 | 75.1 |
MsG0480020529.01.T01 | MTR_8g043650 | 38.043 | 92 | 57 | 0 | 1 | 92 | 1 | 92 | 1.28e-15 | 73.6 |
MsG0480020529.01.T01 | MTR_2g030740 | 28.161 | 174 | 115 | 1 | 1 | 164 | 1 | 174 | 2.17e-15 | 72.8 |
MsG0480020529.01.T01 | MTR_8g086290 | 29.114 | 158 | 105 | 2 | 4 | 156 | 7 | 162 | 2.34e-15 | 71.6 |
MsG0480020529.01.T01 | MTR_1g012570 | 43.056 | 72 | 41 | 0 | 1 | 72 | 1 | 72 | 2.48e-15 | 72.8 |
MsG0480020529.01.T01 | MTR_1g105910 | 32.117 | 137 | 83 | 1 | 1 | 127 | 1 | 137 | 2.50e-15 | 72.8 |
MsG0480020529.01.T01 | MTR_1g108510 | 28.313 | 166 | 106 | 2 | 1 | 156 | 1 | 163 | 2.68e-15 | 72.4 |
MsG0480020529.01.T01 | MTR_3g052870 | 38.043 | 92 | 57 | 0 | 1 | 92 | 1 | 92 | 5.13e-15 | 71.6 |
MsG0480020529.01.T01 | MTR_1g106070 | 43.056 | 72 | 41 | 0 | 1 | 72 | 1 | 72 | 5.24e-15 | 70.9 |
MsG0480020529.01.T01 | MTR_1g105920 | 38.043 | 92 | 57 | 0 | 1 | 92 | 1 | 92 | 5.24e-15 | 72.0 |
MsG0480020529.01.T01 | MTR_1g108580 | 41.667 | 72 | 42 | 0 | 1 | 72 | 1 | 72 | 5.98e-15 | 71.6 |
MsG0480020529.01.T01 | MTR_3g080940 | 40.217 | 92 | 53 | 1 | 1 | 90 | 1 | 92 | 6.31e-15 | 71.2 |
MsG0480020529.01.T01 | MTR_3g030770 | 40.278 | 72 | 43 | 0 | 1 | 72 | 1 | 72 | 9.84e-15 | 70.9 |
MsG0480020529.01.T01 | MTR_5g055100 | 26.471 | 170 | 106 | 4 | 1 | 161 | 1 | 160 | 1.19e-14 | 70.9 |
MsG0480020529.01.T01 | MTR_1g077360 | 39.024 | 82 | 50 | 0 | 1 | 82 | 1 | 82 | 1.21e-14 | 70.9 |
MsG0480020529.01.T01 | MTR_2g085250 | 40.278 | 72 | 43 | 0 | 1 | 72 | 1 | 72 | 1.73e-14 | 70.5 |
MsG0480020529.01.T01 | MTR_2g085280 | 40.278 | 72 | 43 | 0 | 1 | 72 | 1 | 72 | 1.76e-14 | 70.5 |
MsG0480020529.01.T01 | MTR_5g053390 | 36.364 | 88 | 56 | 0 | 1 | 88 | 1 | 88 | 2.16e-14 | 70.1 |
MsG0480020529.01.T01 | MTR_5g045560 | 40.278 | 72 | 43 | 0 | 1 | 72 | 1 | 72 | 1.49e-13 | 67.8 |
MsG0480020529.01.T01 | MTR_2g093190 | 38.889 | 72 | 44 | 0 | 1 | 72 | 1 | 72 | 2.51e-13 | 67.0 |
MsG0480020529.01.T01 | MTR_0121s0100 | 36.111 | 72 | 46 | 0 | 1 | 72 | 1 | 72 | 3.16e-13 | 64.7 |
MsG0480020529.01.T01 | MTR_2g105290 | 26.380 | 163 | 110 | 3 | 4 | 156 | 7 | 169 | 6.43e-13 | 65.1 |
MsG0480020529.01.T01 | MTR_1g075600 | 32.609 | 92 | 62 | 0 | 1 | 92 | 1 | 92 | 9.85e-13 | 65.5 |
MsG0480020529.01.T01 | MTR_3g030780 | 37.500 | 72 | 45 | 0 | 1 | 72 | 1 | 72 | 1.15e-12 | 63.2 |
MsG0480020529.01.T01 | MTR_4g094638 | 37.143 | 70 | 44 | 0 | 9 | 78 | 2 | 71 | 3.76e-12 | 63.2 |
MsG0480020529.01.T01 | MTR_0121s0080 | 28.099 | 121 | 74 | 1 | 1 | 121 | 1 | 108 | 4.37e-12 | 63.9 |
MsG0480020529.01.T01 | MTR_4g094632 | 36.111 | 72 | 46 | 0 | 9 | 80 | 2 | 73 | 2.82e-11 | 60.1 |
MsG0480020529.01.T01 | MTR_8g051580 | 26.897 | 145 | 99 | 2 | 9 | 147 | 2 | 145 | 3.92e-11 | 60.1 |
MsG0480020529.01.T01 | MTR_8g046350 | 30.769 | 130 | 76 | 4 | 9 | 130 | 2 | 125 | 6.09e-11 | 59.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480020529.01.T01 | AT4G36590 | 28.743 | 167 | 102 | 4 | 5 | 156 | 3 | 167 | 7.69e-17 | 77.0 |
MsG0480020529.01.T01 | AT1G29962 | 43.750 | 80 | 44 | 1 | 1 | 80 | 1 | 79 | 2.06e-15 | 72.0 |
MsG0480020529.01.T01 | AT2G34440 | 30.435 | 161 | 100 | 6 | 9 | 159 | 2 | 160 | 1.36e-14 | 69.7 |
MsG0480020529.01.T01 | AT2G24840 | 29.940 | 167 | 97 | 4 | 7 | 159 | 61 | 221 | 1.68e-14 | 70.9 |
MsG0480020529.01.T01 | AT5G60440 | 29.730 | 148 | 86 | 5 | 7 | 153 | 5 | 135 | 8.71e-14 | 69.3 |
MsG0480020529.01.T01 | AT1G28460 | 42.308 | 78 | 44 | 1 | 1 | 78 | 1 | 77 | 7.81e-13 | 65.1 |
MsG0480020529.01.T01 | AT1G01530 | 32.174 | 115 | 73 | 2 | 5 | 114 | 3 | 117 | 7.83e-12 | 63.2 |
MsG0480020529.01.T01 | AT3G04100 | 35.294 | 85 | 52 | 1 | 2 | 86 | 7 | 88 | 1.08e-11 | 62.4 |
MsG0480020529.01.T01 | AT3G66656 | 40.625 | 64 | 38 | 0 | 9 | 72 | 2 | 65 | 2.89e-11 | 60.5 |
MsG0480020529.01.T01 | AT1G65360 | 29.310 | 116 | 75 | 2 | 5 | 116 | 3 | 115 | 3.15e-11 | 61.2 |
Find 39 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTGAGTTAACAACACTTTC+AGG | 0.202264 | 4:-42942262 | MsG0480020529.01.T01:CDS |
TTGAAGATGTTGGAAAGTTT+TGG | 0.237802 | 4:-42942031 | MsG0480020529.01.T01:CDS |
ATGTATTGTCGTTCCTTTCA+TGG | 0.278578 | 4:-42941559 | MsG0480020529.01.T01:CDS |
GCCACCATACCTTTACCTTT+TGG | 0.288094 | 4:+42941520 | None:intergenic |
ATCATTTCCTCTTCTGTTGA+AGG | 0.293016 | 4:+42942136 | None:intergenic |
GATGGTTCTCCATAACAAAA+TGG | 0.308539 | 4:+42942199 | None:intergenic |
TGTTTATCTGATCATATATC+TGG | 0.321316 | 4:+42941412 | None:intergenic |
ACACAAGGAGTCAACCTTAT+TGG | 0.323352 | 4:-42941475 | MsG0480020529.01.T01:CDS |
TTTCTTTCACTTGATCATAT+TGG | 0.336690 | 4:+42941972 | None:intergenic |
ATCCTCCGCTTGCACCAATA+AGG | 0.357163 | 4:+42941461 | None:intergenic |
AGAAGAGGAAATGATGAAAC+TGG | 0.357197 | 4:-42942128 | MsG0480020529.01.T01:CDS |
ATTGGTGCAAGCGGAGGATA+TGG | 0.361451 | 4:-42941457 | MsG0480020529.01.T01:CDS |
ATTCTCATGCTTTCTCCAAC+GGG | 0.372760 | 4:-42942226 | MsG0480020529.01.T01:CDS |
TTTCTTATAGATTCCGAAGA+TGG | 0.411876 | 4:+42942181 | None:intergenic |
TTTATTTGCGACAGCAACTA+AGG | 0.428054 | 4:+42941940 | None:intergenic |
TTGTTATGGAGAACCATCTT+CGG | 0.454851 | 4:-42942194 | MsG0480020529.01.T01:CDS |
GCATTTACAACGAGAAAGTC+TGG | 0.455029 | 4:-42942301 | MsG0480020529.01.T01:CDS |
TTTCCTCTTGATGGCCTCTT+CGG | 0.457920 | 4:+42942373 | None:intergenic |
CTGAGTTAACAACACTTTCA+GGG | 0.482866 | 4:-42942261 | MsG0480020529.01.T01:CDS |
TATTCTCATGCTTTCTCCAA+CGG | 0.513625 | 4:-42942227 | MsG0480020529.01.T01:CDS |
TAACAAAATGGTTTCCCCGT+TGG | 0.519377 | 4:+42942211 | None:intergenic |
TTATCCAAAAGGTAAAGGTA+TGG | 0.531949 | 4:-42941524 | MsG0480020529.01.T01:CDS |
TGTGTTTCTATATCATGAGA+AGG | 0.540228 | 4:+42941493 | None:intergenic |
TGAAAATCCTTCAACAGAAG+AGG | 0.558587 | 4:-42942143 | MsG0480020529.01.T01:CDS |
GTCAACCTTATTGGTGCAAG+CGG | 0.586884 | 4:-42941466 | MsG0480020529.01.T01:CDS |
AACCTTATTGGTGCAAGCGG+AGG | 0.596051 | 4:-42941463 | MsG0480020529.01.T01:CDS |
TCCAAAAGGTAAAGGTATGG+TGG | 0.601173 | 4:-42941521 | MsG0480020529.01.T01:CDS |
GAGTAAGAATGGCGCCGAAG+AGG | 0.604647 | 4:-42942387 | None:intergenic |
TGAGTTAACAACACTTTCAG+GGG | 0.607847 | 4:-42942260 | MsG0480020529.01.T01:CDS |
TGGATATTGGTCGATACAAG+AGG | 0.608360 | 4:-42942011 | MsG0480020529.01.T01:CDS |
GCAAGCGGAGGATATGGAAG+TGG | 0.633800 | 4:-42941451 | MsG0480020529.01.T01:CDS |
GCGCCGAAGAGGCCATCAAG+AGG | 0.648337 | 4:-42942376 | MsG0480020529.01.T01:CDS |
TGAAAGTGTTGTTAACTCAG+AGG | 0.669188 | 4:+42942264 | None:intergenic |
GGAGGAGAGCTTAACCCTCG+TGG | 0.693010 | 4:-42941893 | MsG0480020529.01.T01:intron |
TTCTCATGCTTTCTCCAACG+GGG | 0.698001 | 4:-42942225 | MsG0480020529.01.T01:CDS |
AAGATGTACACTTACCACGA+GGG | 0.717576 | 4:+42941879 | None:intergenic |
AAGCATGAGAATATCAACAG+AGG | 0.718686 | 4:+42942237 | None:intergenic |
TCTCATGATATAGAAACACA+AGG | 0.726046 | 4:-42941490 | MsG0480020529.01.T01:CDS |
AAAGTCTGGAATTTACAACA+AGG | 0.757794 | 4:-42942287 | MsG0480020529.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGCAAAAAAAAAAAAAAAAC+AGG | + | Chr4:42942159-42942178 | None:intergenic | 15.0% |
!! | ATAAATAATCTCTTGAAAAA+TGG | - | Chr4:42941888-42941907 | MsG0480020529.01.T01:intron | 15.0% |
!! | CTTAAAATAATTAGACAAAA+AGG | + | Chr4:42942006-42942025 | None:intergenic | 15.0% |
!!! | CTAATTATTTTAAGTGAATT+TGG | - | Chr4:42942012-42942031 | MsG0480020529.01.T01:CDS | 15.0% |
!!! | TGAAAAAAATGATGTTTTTT+TGG | - | Chr4:42941713-42941732 | MsG0480020529.01.T01:intron | 15.0% |
!!! | TTCAATCTTTTTTATCCAAA+AGG | - | Chr4:42942267-42942286 | MsG0480020529.01.T01:CDS | 20.0% |
! | AAAAAGATTGAATCCATGAA+AGG | + | Chr4:42942259-42942278 | None:intergenic | 25.0% |
! | AATAATCTCTTGAAAAATGG+AGG | - | Chr4:42941891-42941910 | MsG0480020529.01.T01:intron | 25.0% |
! | ACGTAAAAATTTGAAGATGT+TGG | - | Chr4:42941761-42941780 | MsG0480020529.01.T01:intron | 25.0% |
! | TTTCTTTCACTTGATCATAT+TGG | + | Chr4:42941833-42941852 | None:intergenic | 25.0% |
!!! | CTTTTTTATCCAAAAGGTAA+AGG | - | Chr4:42942273-42942292 | MsG0480020529.01.T01:CDS | 25.0% |
!!! | TTTTTTGCTTGACATTTACT+AGG | - | Chr4:42942170-42942189 | MsG0480020529.01.T01:CDS | 25.0% |
ATCAACAAAGATCATGAAGT+TGG | - | Chr4:42942113-42942132 | MsG0480020529.01.T01:CDS | 30.0% | |
TCTCATGATATAGAAACACA+AGG | - | Chr4:42942312-42942331 | MsG0480020529.01.T01:CDS | 30.0% | |
TGTAGTAATTTCTACCATTG+AGG | - | Chr4:42942046-42942065 | MsG0480020529.01.T01:CDS | 30.0% | |
TTATCCAAAAGGTAAAGGTA+TGG | - | Chr4:42942278-42942297 | MsG0480020529.01.T01:CDS | 30.0% | |
TTTCTTATAGATTCCGAAGA+TGG | + | Chr4:42941624-42941643 | None:intergenic | 30.0% | |
! | AAAGTCTGGAATTTACAACA+AGG | - | Chr4:42941515-42941534 | MsG0480020529.01.T01:CDS | 30.0% |
! | TGTGTTTCTATATCATGAGA+AGG | + | Chr4:42942312-42942331 | None:intergenic | 30.0% |
! | TTGAAGATGTTGGAAAGTTT+TGG | - | Chr4:42941771-42941790 | MsG0480020529.01.T01:intron | 30.0% |
!!! | ACTTTTTGTTTTCCTCTTGA+TGG | + | Chr4:42941441-42941460 | None:intergenic | 30.0% |
!!! | TGTTGGAAAGTTTTGGATAT+TGG | - | Chr4:42941778-42941797 | MsG0480020529.01.T01:intron | 30.0% |
AAATCCTCCTTATGTCATTG+AGG | - | Chr4:42942088-42942107 | MsG0480020529.01.T01:CDS | 35.0% | |
AAGCATGAGAATATCAACAG+AGG | + | Chr4:42941568-42941587 | None:intergenic | 35.0% | |
AGAAGAGGAAATGATGAAAC+TGG | - | Chr4:42941674-42941693 | MsG0480020529.01.T01:intron | 35.0% | |
ATCATTTCCTCTTCTGTTGA+AGG | + | Chr4:42941669-42941688 | None:intergenic | 35.0% | |
ATGTATTGTCGTTCCTTTCA+TGG | - | Chr4:42942243-42942262 | MsG0480020529.01.T01:CDS | 35.0% | |
CTGAGTTAACAACACTTTCA+GGG | - | Chr4:42941541-42941560 | MsG0480020529.01.T01:CDS | 35.0% | |
GATGGTTCTCCATAACAAAA+TGG | + | Chr4:42941606-42941625 | None:intergenic | 35.0% | |
TATTCTCATGCTTTCTCCAA+CGG | - | Chr4:42941575-42941594 | MsG0480020529.01.T01:intron | 35.0% | |
TCTGAGTTAACAACACTTTC+AGG | - | Chr4:42941540-42941559 | MsG0480020529.01.T01:CDS | 35.0% | |
TGAAAATCCTTCAACAGAAG+AGG | - | Chr4:42941659-42941678 | MsG0480020529.01.T01:intron | 35.0% | |
TGAGTTAACAACACTTTCAG+GGG | - | Chr4:42941542-42941561 | MsG0480020529.01.T01:CDS | 35.0% | |
TTGATGTCCTCAATGACATA+AGG | + | Chr4:42942098-42942117 | None:intergenic | 35.0% | |
TTGTTATGGAGAACCATCTT+CGG | - | Chr4:42941608-42941627 | MsG0480020529.01.T01:intron | 35.0% | |
TTTATTTGCGACAGCAACTA+AGG | + | Chr4:42941865-42941884 | None:intergenic | 35.0% | |
! | TTTGGATAAAAAGCATGCTG+CGG | - | Chr4:42941731-42941750 | MsG0480020529.01.T01:intron | 35.0% |
!! | TGAAAGTGTTGTTAACTCAG+AGG | + | Chr4:42941541-42941560 | None:intergenic | 35.0% |
AAGATGTACACTTACCACGA+GGG | + | Chr4:42941926-42941945 | None:intergenic | 40.0% | |
ACACAAGGAGTCAACCTTAT+TGG | - | Chr4:42942327-42942346 | MsG0480020529.01.T01:CDS | 40.0% | |
ATGTCCTCAATGACATAAGG+AGG | + | Chr4:42942095-42942114 | None:intergenic | 40.0% | |
ATTCTCATGCTTTCTCCAAC+GGG | - | Chr4:42941576-42941595 | MsG0480020529.01.T01:intron | 40.0% | |
GCATTTACAACGAGAAAGTC+TGG | - | Chr4:42941501-42941520 | MsG0480020529.01.T01:CDS | 40.0% | |
TAACAAAATGGTTTCCCCGT+TGG | + | Chr4:42941594-42941613 | None:intergenic | 40.0% | |
TCTACCATTGAGGAACTGAA+TGG | - | Chr4:42942056-42942075 | MsG0480020529.01.T01:CDS | 40.0% | |
TGGATATTGGTCGATACAAG+AGG | - | Chr4:42941791-42941810 | MsG0480020529.01.T01:intron | 40.0% | |
! | ACGGGGAAACCATTTTGTTA+TGG | - | Chr4:42941594-42941613 | MsG0480020529.01.T01:intron | 40.0% |
! | TCCAAAAGGTAAAGGTATGG+TGG | - | Chr4:42942281-42942300 | MsG0480020529.01.T01:CDS | 40.0% |
GAAGATGTACACTTACCACG+AGG | + | Chr4:42941927-42941946 | None:intergenic | 45.0% | |
GACTCCATTCAGTTCCTCAA+TGG | + | Chr4:42942063-42942082 | None:intergenic | 45.0% | |
GTCAACCTTATTGGTGCAAG+CGG | - | Chr4:42942336-42942355 | MsG0480020529.01.T01:CDS | 45.0% | |
TTCTCATGCTTTCTCCAACG+GGG | - | Chr4:42941577-42941596 | MsG0480020529.01.T01:intron | 45.0% | |
! | GCCACCATACCTTTACCTTT+TGG | + | Chr4:42942285-42942304 | None:intergenic | 45.0% |
! | TTTCCTCTTGATGGCCTCTT+CGG | + | Chr4:42941432-42941451 | None:intergenic | 45.0% |
AACCTTATTGGTGCAAGCGG+AGG | - | Chr4:42942339-42942358 | MsG0480020529.01.T01:CDS | 50.0% | |
ATCCTCCGCTTGCACCAATA+AGG | + | Chr4:42942344-42942363 | None:intergenic | 50.0% | |
ATTGGTGCAAGCGGAGGATA+TGG | - | Chr4:42942345-42942364 | MsG0480020529.01.T01:CDS | 50.0% | |
GCAAGCGGAGGATATGGAAG+TGG | - | Chr4:42942351-42942370 | MsG0480020529.01.T01:CDS | 55.0% | |
GGAGGAGAGCTTAACCCTCG+TGG | - | Chr4:42941909-42941928 | MsG0480020529.01.T01:CDS | 60.0% | |
GCGCCGAAGAGGCCATCAAG+AGG | - | Chr4:42941426-42941445 | MsG0480020529.01.T01:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr4 | gene | 42941423 | 42942401 | 42941423 | ID=MsG0480020529.01;Name=MsG0480020529.01 |
Chr4 | mRNA | 42941423 | 42942401 | 42941423 | ID=MsG0480020529.01.T01;Parent=MsG0480020529.01;Name=MsG0480020529.01.T01;_AED=0.17;_eAED=0.17;_QI=0|0|0|1|1|1|2|0|224 |
Chr4 | exon | 42941894 | 42942401 | 42941894 | ID=MsG0480020529.01.T01:exon:4679;Parent=MsG0480020529.01.T01 |
Chr4 | exon | 42941423 | 42941589 | 42941423 | ID=MsG0480020529.01.T01:exon:4678;Parent=MsG0480020529.01.T01 |
Chr4 | CDS | 42941894 | 42942401 | 42941894 | ID=MsG0480020529.01.T01:cds;Parent=MsG0480020529.01.T01 |
Chr4 | CDS | 42941423 | 42941589 | 42941423 | ID=MsG0480020529.01.T01:cds;Parent=MsG0480020529.01.T01 |
Gene Sequence |
Protein sequence |