Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021186.01.T01 | XP_013455733.1 | 54.615 | 260 | 88 | 6 | 14 | 270 | 1 | 233 | 4.36E-77 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021186.01.T01 | Q4PSU4 | 29.279 | 222 | 115 | 7 | 20 | 217 | 61 | 264 | 1.66E-19 | 88.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021186.01.T01 | A0A072UJ33 | 54.615 | 260 | 88 | 6 | 14 | 270 | 1 | 233 | 2.08e-77 | 244 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0480021186.01 | MsG0680034864.01 | PPI |
| MsG0480020529.01 | MsG0480021186.01 | PPI |
| MsG0180001737.01 | MsG0480021186.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021186.01.T01 | MTR_4g051538 | 54.615 | 260 | 88 | 6 | 14 | 270 | 1 | 233 | 5.29e-81 | 244 |
| MsG0480021186.01.T01 | MTR_3g104630 | 54.861 | 144 | 50 | 5 | 119 | 260 | 16 | 146 | 8.48e-38 | 130 |
| MsG0480021186.01.T01 | MTR_3g052920 | 37.126 | 167 | 88 | 5 | 14 | 163 | 1 | 167 | 1.26e-22 | 93.6 |
| MsG0480021186.01.T01 | MTR_2g030740 | 38.323 | 167 | 86 | 5 | 14 | 163 | 1 | 167 | 2.61e-22 | 92.8 |
| MsG0480021186.01.T01 | MTR_1g012570 | 37.931 | 174 | 86 | 8 | 14 | 169 | 1 | 170 | 2.67e-22 | 92.8 |
| MsG0480021186.01.T01 | MTR_1g105910 | 37.888 | 161 | 83 | 5 | 14 | 157 | 1 | 161 | 7.18e-22 | 91.7 |
| MsG0480021186.01.T01 | MTR_1g106070 | 37.267 | 161 | 84 | 5 | 14 | 157 | 1 | 161 | 2.32e-21 | 89.0 |
| MsG0480021186.01.T01 | MTR_8g043650 | 37.748 | 151 | 79 | 4 | 14 | 149 | 1 | 151 | 2.37e-21 | 90.1 |
| MsG0480021186.01.T01 | MTR_1g108510 | 33.133 | 166 | 98 | 3 | 14 | 169 | 1 | 163 | 3.65e-21 | 89.4 |
| MsG0480021186.01.T01 | MTR_3g030770 | 33.133 | 166 | 98 | 3 | 14 | 169 | 1 | 163 | 6.92e-21 | 88.6 |
| MsG0480021186.01.T01 | MTR_1g077360 | 31.351 | 185 | 110 | 4 | 14 | 188 | 1 | 178 | 8.06e-21 | 89.0 |
| MsG0480021186.01.T01 | MTR_3g080940 | 33.735 | 166 | 95 | 4 | 14 | 168 | 1 | 162 | 1.40e-20 | 87.4 |
| MsG0480021186.01.T01 | MTR_2g085250 | 29.064 | 203 | 124 | 6 | 14 | 207 | 1 | 192 | 3.42e-20 | 87.0 |
| MsG0480021186.01.T01 | MTR_2g085280 | 29.064 | 203 | 124 | 6 | 14 | 207 | 1 | 192 | 3.79e-20 | 87.0 |
| MsG0480021186.01.T01 | MTR_1g075600 | 28.922 | 204 | 123 | 5 | 14 | 207 | 1 | 192 | 4.38e-20 | 86.7 |
| MsG0480021186.01.T01 | MTR_5g053390 | 31.250 | 208 | 113 | 8 | 14 | 207 | 1 | 192 | 5.16e-20 | 86.7 |
| MsG0480021186.01.T01 | MTR_1g105920 | 37.086 | 151 | 80 | 4 | 14 | 149 | 1 | 151 | 8.17e-20 | 85.9 |
| MsG0480021186.01.T01 | MTR_1g108580 | 33.540 | 161 | 90 | 4 | 14 | 157 | 1 | 161 | 8.55e-19 | 83.2 |
| MsG0480021186.01.T01 | MTR_5g045560 | 33.577 | 137 | 81 | 3 | 14 | 140 | 1 | 137 | 1.26e-18 | 82.8 |
| MsG0480021186.01.T01 | MTR_3g052870 | 41.322 | 121 | 61 | 3 | 14 | 124 | 1 | 121 | 1.53e-18 | 82.0 |
| MsG0480021186.01.T01 | MTR_8g086290 | 32.298 | 161 | 96 | 5 | 17 | 169 | 7 | 162 | 2.34e-18 | 80.9 |
| MsG0480021186.01.T01 | MTR_2g093190 | 32.298 | 161 | 92 | 4 | 14 | 157 | 1 | 161 | 2.04e-17 | 79.3 |
| MsG0480021186.01.T01 | MTR_5g055100 | 26.556 | 241 | 141 | 7 | 14 | 224 | 1 | 235 | 4.63e-17 | 78.6 |
| MsG0480021186.01.T01 | MTR_2g105290 | 29.012 | 162 | 100 | 4 | 17 | 169 | 7 | 162 | 1.23e-16 | 75.9 |
| MsG0480021186.01.T01 | MTR_0121s0100 | 44.444 | 72 | 40 | 0 | 14 | 85 | 1 | 72 | 6.71e-16 | 72.8 |
| MsG0480021186.01.T01 | MTR_4g094638 | 49.275 | 69 | 35 | 0 | 22 | 90 | 2 | 70 | 3.08e-15 | 72.4 |
| MsG0480021186.01.T01 | MTR_3g030780 | 44.444 | 72 | 40 | 0 | 14 | 85 | 1 | 72 | 4.30e-15 | 70.9 |
| MsG0480021186.01.T01 | MTR_1g105905 | 29.524 | 210 | 119 | 8 | 31 | 214 | 1 | 207 | 1.18e-14 | 71.6 |
| MsG0480021186.01.T01 | MTR_8g046350 | 34.513 | 113 | 61 | 2 | 22 | 128 | 2 | 107 | 1.89e-14 | 69.7 |
| MsG0480021186.01.T01 | MTR_0121s0080 | 30.120 | 166 | 99 | 4 | 14 | 162 | 1 | 166 | 6.33e-14 | 69.7 |
| MsG0480021186.01.T01 | MTR_8g051580 | 34.959 | 123 | 56 | 4 | 39 | 139 | 19 | 139 | 1.12e-13 | 68.2 |
| MsG0480021186.01.T01 | MTR_4g094632 | 32.639 | 144 | 85 | 4 | 22 | 164 | 2 | 134 | 1.13e-13 | 67.4 |
| MsG0480021186.01.T01 | MTR_1g047550 | 31.447 | 159 | 81 | 5 | 22 | 154 | 2 | 158 | 1.61e-13 | 67.8 |
| MsG0480021186.01.T01 | MTR_8g022970 | 32.934 | 167 | 93 | 5 | 20 | 172 | 13 | 174 | 2.03e-13 | 67.4 |
| MsG0480021186.01.T01 | MTR_3g067875 | 50.909 | 55 | 27 | 0 | 31 | 85 | 1 | 55 | 2.14e-13 | 64.3 |
| MsG0480021186.01.T01 | MTR_8g079502 | 40.000 | 80 | 47 | 1 | 22 | 100 | 2 | 81 | 3.06e-13 | 67.0 |
| MsG0480021186.01.T01 | MTR_1g054265 | 38.571 | 70 | 43 | 0 | 22 | 91 | 2 | 71 | 9.21e-12 | 62.4 |
| MsG0480021186.01.T01 | MTR_4g131030 | 37.500 | 72 | 45 | 0 | 22 | 93 | 2 | 73 | 1.30e-11 | 63.2 |
| MsG0480021186.01.T01 | MTR_7g028448 | 30.709 | 127 | 82 | 4 | 39 | 161 | 29 | 153 | 1.56e-11 | 62.0 |
| MsG0480021186.01.T01 | MTR_4g036915 | 30.709 | 127 | 82 | 4 | 39 | 161 | 29 | 153 | 1.56e-11 | 62.0 |
| MsG0480021186.01.T01 | MTR_1g029670 | 35.345 | 116 | 51 | 2 | 22 | 113 | 2 | 117 | 2.36e-11 | 61.6 |
| MsG0480021186.01.T01 | MTR_1g063160 | 36.111 | 72 | 46 | 0 | 22 | 93 | 2 | 73 | 5.16e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021186.01.T01 | AT1G29962 | 36.364 | 176 | 94 | 4 | 14 | 174 | 1 | 173 | 7.06e-23 | 93.2 |
| MsG0480021186.01.T01 | AT4G36590 | 34.731 | 167 | 92 | 3 | 18 | 169 | 3 | 167 | 3.28e-22 | 92.8 |
| MsG0480021186.01.T01 | AT1G28460 | 36.416 | 173 | 95 | 4 | 14 | 174 | 1 | 170 | 4.93e-21 | 88.2 |
| MsG0480021186.01.T01 | AT2G24840 | 29.279 | 222 | 115 | 7 | 20 | 217 | 61 | 264 | 1.69e-20 | 88.6 |
| MsG0480021186.01.T01 | AT5G60440 | 32.673 | 202 | 118 | 7 | 18 | 206 | 3 | 199 | 1.43e-18 | 84.0 |
| MsG0480021186.01.T01 | AT1G28450 | 33.908 | 174 | 97 | 4 | 14 | 172 | 1 | 171 | 5.70e-18 | 80.1 |
| MsG0480021186.01.T01 | AT1G01530 | 37.288 | 118 | 68 | 2 | 18 | 130 | 3 | 119 | 8.81e-18 | 80.9 |
| MsG0480021186.01.T01 | AT3G04100 | 42.391 | 92 | 50 | 1 | 12 | 103 | 4 | 92 | 1.93e-16 | 76.3 |
| MsG0480021186.01.T01 | AT2G34440 | 31.646 | 158 | 99 | 5 | 22 | 172 | 2 | 157 | 1.07e-15 | 73.6 |
| MsG0480021186.01.T01 | AT1G65360 | 31.034 | 116 | 76 | 1 | 18 | 129 | 3 | 118 | 1.10e-14 | 72.0 |
| MsG0480021186.01.T01 | AT3G66656 | 46.154 | 65 | 35 | 0 | 22 | 86 | 2 | 66 | 3.09e-13 | 67.0 |
| MsG0480021186.01.T01 | AT1G47760 | 38.554 | 83 | 48 | 1 | 22 | 104 | 2 | 81 | 3.32e-12 | 63.9 |
Find 50 sgRNAs with CRISPR-Local
Find 67 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGCATATCATTCATCTTT+AGG | 0.191781 | 4:-54849400 | None:intergenic |
| ACAAATCCTCCTTATGTCTT+TGG | 0.244037 | 4:+54848986 | MsG0480021186.01.T01:CDS |
| AACAACAACTGTTATGAAAT+TGG | 0.248949 | 4:+54849013 | MsG0480021186.01.T01:CDS |
| CAAATCCTCCTTATGTCTTT+GGG | 0.283816 | 4:+54848987 | MsG0480021186.01.T01:CDS |
| TTCTTCTCTTAGTACTATCT+TGG | 0.287087 | 4:+54848293 | MsG0480021186.01.T01:CDS |
| ACGGGAAAGTTTGAAGGCTT+TGG | 0.328236 | 4:+54848659 | MsG0480021186.01.T01:CDS |
| GAAGGTTCTCCATAACAATA+TGG | 0.353627 | 4:-54848501 | None:intergenic |
| CTTTGGAAAGTTATGGCTAT+TGG | 0.358280 | 4:+54848676 | MsG0480021186.01.T01:CDS |
| AAAATTGGACACATCTTTAG+TGG | 0.370003 | 4:+54848746 | MsG0480021186.01.T01:CDS |
| CCGCTTGCACGGTCAAGGTT+TGG | 0.377489 | 4:-54849346 | None:intergenic |
| GATGTTATTGCTTCTCTTGA+AGG | 0.392101 | 4:+54849304 | MsG0480021186.01.T01:CDS |
| TCTGAATTATCAACACTTTG+TGG | 0.392582 | 4:+54848438 | MsG0480021186.01.T01:CDS |
| TTGAAGGCTTTGGAAAGTTA+TGG | 0.393387 | 4:+54848669 | MsG0480021186.01.T01:CDS |
| CTTGACCGTGCAAGCGGAAG+TGG | 0.404505 | 4:+54849352 | MsG0480021186.01.T01:CDS |
| CTTGCTATGGATTGAGAAGA+AGG | 0.408194 | 4:-54848519 | None:intergenic |
| GCATGTTGCGGAAGCACAAC+GGG | 0.408411 | 4:+54848641 | MsG0480021186.01.T01:CDS |
| GCAGGAAAACCATATTGTTA+TGG | 0.420932 | 4:+54848492 | MsG0480021186.01.T01:CDS |
| CGTGCAAGCGGAAGTGGAAA+TGG | 0.424404 | 4:+54849358 | MsG0480021186.01.T01:CDS |
| CTGAATTATCAACACTTTGT+GGG | 0.424852 | 4:+54848439 | MsG0480021186.01.T01:CDS |
| TAGTACTATCTTGGTTAAGA+TGG | 0.426571 | 4:+54848302 | MsG0480021186.01.T01:CDS |
| CTTCAAAATTGTTCTTGCTA+TGG | 0.431100 | 4:-54848532 | None:intergenic |
| TTACCTCTTGATGTCCTCTT+CGG | 0.431146 | 4:-54848327 | None:intergenic |
| TTTAATTCTTCTTCTACTGA+AGG | 0.442448 | 4:-54848564 | None:intergenic |
| CACTTCCGCTTGCACGGTCA+AGG | 0.445314 | 4:-54849351 | None:intergenic |
| ATTCTTATTATTTCTCCAGC+AGG | 0.453510 | 4:+54848474 | MsG0480021186.01.T01:CDS |
| AATTTCATAACAGTTGTTGT+TGG | 0.458178 | 4:-54849011 | None:intergenic |
| CATTTCCACTTCCGCTTGCA+CGG | 0.466536 | 4:-54849357 | None:intergenic |
| TTGTTGGCCCCAAAGACATA+AGG | 0.478695 | 4:-54848995 | None:intergenic |
| TTAATTCTTCTTCTACTGAA+GGG | 0.481788 | 4:-54848563 | None:intergenic |
| AGACATAAGGAGGATTTGTC+TGG | 0.505888 | 4:-54848982 | None:intergenic |
| AGCACAACGGGAAAGTTTGA+AGG | 0.506480 | 4:+54848653 | MsG0480021186.01.T01:CDS |
| ATTTATGATCCAAAAGGAAA+AGG | 0.506756 | 4:+54849277 | MsG0480021186.01.T01:CDS |
| TCCCAGATTTATGATCCAAA+AGG | 0.515467 | 4:+54849271 | MsG0480021186.01.T01:CDS |
| TCTTGCATAGATGAACTGAA+TGG | 0.524259 | 4:+54848956 | MsG0480021186.01.T01:CDS |
| ATAAGTAGTGTCTTAAGCAA+TGG | 0.548667 | 4:+54848786 | MsG0480021186.01.T01:CDS |
| TGAATTATCAACACTTTGTG+GGG | 0.569118 | 4:+54848440 | MsG0480021186.01.T01:CDS |
| CCAAACCTTGACCGTGCAAG+CGG | 0.587745 | 4:+54849346 | MsG0480021186.01.T01:CDS |
| GGAGGAGAGATTAATCCTCA+TGG | 0.604055 | 4:+54848807 | MsG0480021186.01.T01:CDS |
| AAATCCTCCTTATGTCTTTG+GGG | 0.607760 | 4:+54848988 | MsG0480021186.01.T01:CDS |
| AGTAGTGTCTTAAGCAATGG+AGG | 0.611596 | 4:+54848789 | MsG0480021186.01.T01:CDS |
| TTGGCCCCAAAGACATAAGG+AGG | 0.611952 | 4:-54848992 | None:intergenic |
| TGTACATCTTCTAATCAACT+TGG | 0.615554 | 4:+54848834 | MsG0480021186.01.T01:CDS |
| ACAAAGTGTTGATAATTCAG+AGG | 0.616841 | 4:-54848436 | None:intergenic |
| TGATCCAAAAGGAAAAGGCA+AGG | 0.624272 | 4:+54849282 | MsG0480021186.01.T01:CDS |
| AGCATGTTGCGGAAGCACAA+CGG | 0.628936 | 4:+54848640 | MsG0480021186.01.T01:CDS |
| TTTGGATGAAAAGCATGTTG+CGG | 0.629913 | 4:+54848629 | MsG0480021186.01.T01:CDS |
| TGGTTAAGATGGCTCCGAAG+AGG | 0.660173 | 4:+54848313 | MsG0480021186.01.T01:CDS |
| GCTCCGAAGAGGACATCAAG+AGG | 0.673948 | 4:+54848324 | MsG0480021186.01.T01:CDS |
| GAAGGTAGAAATAAAACACA+AGG | 0.705496 | 4:+54849322 | MsG0480021186.01.T01:CDS |
| GAAGATGTACACGTACCATG+AGG | 0.726934 | 4:-54848822 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAATTTATTTATGAAAAAG+TGG | + | Chr4:54848910-54848929 | MsG0480021186.01.T01:intron | 15.0% |
| !! | AAGAAATTATACAATGTGTT+AGG | - | Chr4:54849233-54849252 | None:intergenic | 20.0% |
| !! | ATCTCATAATTGCATTAAAA+TGG | - | Chr4:54849134-54849153 | None:intergenic | 20.0% |
| !! | TTATGACCAGTTAAAAAAAT+TGG | + | Chr4:54848731-54848750 | MsG0480021186.01.T01:CDS | 20.0% |
| !!! | AATGTCTTCATATCTTTTTT+TGG | - | Chr4:54849185-54849204 | None:intergenic | 20.0% |
| !!! | ATGTCTTCATATCTTTTTTT+GGG | - | Chr4:54849184-54849203 | None:intergenic | 20.0% |
| !!! | TACTCTTGTTTATATGAATT+TGG | - | Chr4:54849059-54849078 | None:intergenic | 20.0% |
| ! | AACAACAACTGTTATGAAAT+TGG | + | Chr4:54849013-54849032 | MsG0480021186.01.T01:CDS | 25.0% |
| ! | AATTTCATAACAGTTGTTGT+TGG | - | Chr4:54849014-54849033 | None:intergenic | 25.0% |
| ! | ATTTATGATCCAAAAGGAAA+AGG | + | Chr4:54849277-54849296 | MsG0480021186.01.T01:CDS | 25.0% |
| ! | TGCATTAAAATGGTTAAAGT+TGG | - | Chr4:54849124-54849143 | None:intergenic | 25.0% |
| ! | TTAATTCTTCTTCTACTGAA+GGG | - | Chr4:54848566-54848585 | None:intergenic | 25.0% |
| ! | TTTAATTCTTCTTCTACTGA+AGG | - | Chr4:54848567-54848586 | None:intergenic | 25.0% |
| !! | AGTATAGATTTTTGATGTGT+TGG | - | Chr4:54849100-54849119 | None:intergenic | 25.0% |
| !!! | ATGTGTCCAATTTTTTTAAC+TGG | - | Chr4:54848740-54848759 | None:intergenic | 25.0% |
| AAAATTGGACACATCTTTAG+TGG | + | Chr4:54848746-54848765 | MsG0480021186.01.T01:CDS | 30.0% | |
| ATAAGTAGTGTCTTAAGCAA+TGG | + | Chr4:54848786-54848805 | MsG0480021186.01.T01:CDS | 30.0% | |
| CTGAATTATCAACACTTTGT+GGG | + | Chr4:54848439-54848458 | MsG0480021186.01.T01:CDS | 30.0% | |
| CTTCAAAATTGTTCTTGCTA+TGG | - | Chr4:54848535-54848554 | None:intergenic | 30.0% | |
| GAAGGTAGAAATAAAACACA+AGG | + | Chr4:54849322-54849341 | MsG0480021186.01.T01:CDS | 30.0% | |
| TAGTACTATCTTGGTTAAGA+TGG | + | Chr4:54848302-54848321 | MsG0480021186.01.T01:CDS | 30.0% | |
| TCTGAATTATCAACACTTTG+TGG | + | Chr4:54848438-54848457 | MsG0480021186.01.T01:CDS | 30.0% | |
| TGAATTATCAACACTTTGTG+GGG | + | Chr4:54848440-54848459 | MsG0480021186.01.T01:CDS | 30.0% | |
| TGTACATCTTCTAATCAACT+TGG | + | Chr4:54848834-54848853 | MsG0480021186.01.T01:CDS | 30.0% | |
| TTCTTCTCTTAGTACTATCT+TGG | + | Chr4:54848293-54848312 | MsG0480021186.01.T01:CDS | 30.0% | |
| TTTCTTGTCATTGAAGCTTA+TGG | + | Chr4:54849247-54849266 | MsG0480021186.01.T01:intron | 30.0% | |
| ! | ATTCTTATTATTTCTCCAGC+AGG | + | Chr4:54848474-54848493 | MsG0480021186.01.T01:CDS | 30.0% |
| ! | CACAAAAAATGATGAGCTTT+TGG | + | Chr4:54848611-54848630 | MsG0480021186.01.T01:CDS | 30.0% |
| ! | TCCTTTTGGATCATAAATCT+GGG | - | Chr4:54849275-54849294 | None:intergenic | 30.0% |
| ! | TTCCTTTTGGATCATAAATC+TGG | - | Chr4:54849276-54849295 | None:intergenic | 30.0% |
| !! | ACAAAGTGTTGATAATTCAG+AGG | - | Chr4:54848439-54848458 | None:intergenic | 30.0% |
| AAATCCTCCTTATGTCTTTG+GGG | + | Chr4:54848988-54849007 | MsG0480021186.01.T01:CDS | 35.0% | |
| AATGTGTTAGGTTTATCGCA+TGG | - | Chr4:54849221-54849240 | None:intergenic | 35.0% | |
| ACAAATCCTCCTTATGTCTT+TGG | + | Chr4:54848986-54849005 | MsG0480021186.01.T01:CDS | 35.0% | |
| CAAATCCTCCTTATGTCTTT+GGG | + | Chr4:54848987-54849006 | MsG0480021186.01.T01:CDS | 35.0% | |
| GAAGGTTCTCCATAACAATA+TGG | - | Chr4:54848504-54848523 | None:intergenic | 35.0% | |
| GATGTTATTGCTTCTCTTGA+AGG | + | Chr4:54849304-54849323 | MsG0480021186.01.T01:CDS | 35.0% | |
| GCAGGAAAACCATATTGTTA+TGG | + | Chr4:54848492-54848511 | MsG0480021186.01.T01:CDS | 35.0% | |
| TCCCAGATTTATGATCCAAA+AGG | + | Chr4:54849271-54849290 | MsG0480021186.01.T01:CDS | 35.0% | |
| TCTTGCATAGATGAACTGAA+TGG | + | Chr4:54848956-54848975 | MsG0480021186.01.T01:CDS | 35.0% | |
| ! | CTTTGGAAAGTTATGGCTAT+TGG | + | Chr4:54848676-54848695 | MsG0480021186.01.T01:CDS | 35.0% |
| ! | GCATTTTCAAAGAGAAAGTC+TGG | + | Chr4:54848399-54848418 | MsG0480021186.01.T01:CDS | 35.0% |
| ! | TAACAATATGGTTTTCCTGC+TGG | - | Chr4:54848492-54848511 | None:intergenic | 35.0% |
| ! | TTTGGATGAAAAGCATGTTG+CGG | + | Chr4:54848629-54848648 | MsG0480021186.01.T01:CDS | 35.0% |
| !! | TTGAAGGCTTTGGAAAGTTA+TGG | + | Chr4:54848669-54848688 | MsG0480021186.01.T01:CDS | 35.0% |
| AGACATAAGGAGGATTTGTC+TGG | - | Chr4:54848985-54849004 | None:intergenic | 40.0% | |
| AGTAGTGTCTTAAGCAATGG+AGG | + | Chr4:54848789-54848808 | MsG0480021186.01.T01:CDS | 40.0% | |
| TGATCCAAAAGGAAAAGGCA+AGG | + | Chr4:54849282-54849301 | MsG0480021186.01.T01:CDS | 40.0% | |
| TTACCTCTTGATGTCCTCTT+CGG | - | Chr4:54848330-54848349 | None:intergenic | 40.0% | |
| ! | ACATCCTTGCCTTTTCCTTT+TGG | - | Chr4:54849289-54849308 | None:intergenic | 40.0% |
| ! | CTTGCTATGGATTGAGAAGA+AGG | - | Chr4:54848522-54848541 | None:intergenic | 40.0% |
| ACGGGAAAGTTTGAAGGCTT+TGG | + | Chr4:54848659-54848678 | MsG0480021186.01.T01:CDS | 45.0% | |
| AGCACAACGGGAAAGTTTGA+AGG | + | Chr4:54848653-54848672 | MsG0480021186.01.T01:CDS | 45.0% | |
| GAAGATGTACACGTACCATG+AGG | - | Chr4:54848825-54848844 | None:intergenic | 45.0% | |
| GGAGGAGAGATTAATCCTCA+TGG | + | Chr4:54848807-54848826 | MsG0480021186.01.T01:CDS | 45.0% | |
| TTGTTGGCCCCAAAGACATA+AGG | - | Chr4:54848998-54849017 | None:intergenic | 45.0% | |
| CATTTCCACTTCCGCTTGCA+CGG | - | Chr4:54849360-54849379 | None:intergenic | 50.0% | |
| TGGTTAAGATGGCTCCGAAG+AGG | + | Chr4:54848313-54848332 | MsG0480021186.01.T01:CDS | 50.0% | |
| TTGGCCCCAAAGACATAAGG+AGG | - | Chr4:54848995-54849014 | None:intergenic | 50.0% | |
| ! | AGCATGTTGCGGAAGCACAA+CGG | + | Chr4:54848640-54848659 | MsG0480021186.01.T01:CDS | 50.0% |
| CCAAACCTTGACCGTGCAAG+CGG | + | Chr4:54849346-54849365 | MsG0480021186.01.T01:CDS | 55.0% | |
| CGTGCAAGCGGAAGTGGAAA+TGG | + | Chr4:54849358-54849377 | MsG0480021186.01.T01:CDS | 55.0% | |
| GCTCCGAAGAGGACATCAAG+AGG | + | Chr4:54848324-54848343 | MsG0480021186.01.T01:CDS | 55.0% | |
| ! | GCATGTTGCGGAAGCACAAC+GGG | + | Chr4:54848641-54848660 | MsG0480021186.01.T01:CDS | 55.0% |
| CACTTCCGCTTGCACGGTCA+AGG | - | Chr4:54849354-54849373 | None:intergenic | 60.0% | |
| CCGCTTGCACGGTCAAGGTT+TGG | - | Chr4:54849349-54849368 | None:intergenic | 60.0% | |
| CTTGACCGTGCAAGCGGAAG+TGG | + | Chr4:54849352-54849371 | MsG0480021186.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 54848282 | 54849414 | 54848282 | ID=MsG0480021186.01;Name=MsG0480021186.01 |
| Chr4 | mRNA | 54848282 | 54849414 | 54848282 | ID=MsG0480021186.01.T01;Parent=MsG0480021186.01;Name=MsG0480021186.01.T01;_AED=0.38;_eAED=0.38;_QI=0|0|0|1|0.5|0.33|3|0|271 |
| Chr4 | exon | 54848282 | 54848855 | 54848282 | ID=MsG0480021186.01.T01:exon:57645;Parent=MsG0480021186.01.T01 |
| Chr4 | exon | 54848951 | 54849040 | 54848951 | ID=MsG0480021186.01.T01:exon:57644;Parent=MsG0480021186.01.T01 |
| Chr4 | exon | 54849263 | 54849414 | 54849263 | ID=MsG0480021186.01.T01:exon:57643;Parent=MsG0480021186.01.T01 |
| Chr4 | CDS | 54848282 | 54848855 | 54848282 | ID=MsG0480021186.01.T01:cds;Parent=MsG0480021186.01.T01 |
| Chr4 | CDS | 54848951 | 54849040 | 54848951 | ID=MsG0480021186.01.T01:cds;Parent=MsG0480021186.01.T01 |
| Chr4 | CDS | 54849263 | 54849414 | 54849263 | ID=MsG0480021186.01.T01:cds;Parent=MsG0480021186.01.T01 |
| Gene Sequence |
| Protein sequence |
