AlfalfaGEDB | MsG0480020825.01

M. sativa cultivar ZhongmuNo.1 / MsG0480020825.01

KEGG: -
GO: GO:0003677 GO:0005515 GO:0005634 GO:0006355 GO:0009725
PFAM: PF02362 PF06507

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020825.01.T01	AES88645.2	95.641	803	24	2	1	803	1	792	0	1590

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020825.01.T01	Q9ZTX9	59.661	766	255	15	52	803	63	788	0	830

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020825.01.T01	G7JQF5	95.641	803	24	2	1	803	1	792	0.0	1590

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsG0480020825.01.T01	TF	B3-ARF

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0480020825.01	MsG0780041404.01	0.823613	1.260471e-53	1.090701e-50

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
MsG0080047899.01	MsG0480020825.01	PPI
MsG0280006783.01	MsG0480020825.01	PPI
MsG0480019221.01	MsG0480020825.01	PPI
MsG0480022313.01	MsG0480020825.01	PPI

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0480020825.01.T01	MTR_4g060460	95.641	803	24	2	1	803	1	792	1590
MsG0480020825.01.T01	MTR_4g060460	95.019	803	24	2	1	803	1	787	1578
MsG0480020825.01.T01	MTR_2g093740	70.999	831	192	13	1	803	1	810	1122
MsG0480020825.01.T01	MTR_2g093740	69.905	844	192	14	1	803	1	823	1112
MsG0480020825.01.T01	MTR_2g093740	70.390	770	180	12	1	742	1	750	1023
MsG0480020825.01.T01	MTR_2g093740	69.221	783	180	13	1	742	1	763	1013
MsG0480020825.01.T01	MTR_2g093740	69.971	696	164	11	133	803	5	680	954
MsG0480020825.01.T01	MTR_2g093740	68.688	709	164	12	133	803	5	693	945
MsG0480020825.01.T01	MTR_2g093740	68.458	707	175	12	1	679	1	687	901
MsG0480020825.01.T01	MTR_2g093740	67.222	720	175	13	1	679	1	700	892

Showing 1 to 10 of 84 entries

Previous1 2 3 4 5…9Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020825.01.T01	AT5G60450	59.610	770	257	15	48	803	35	764	0.0	833
MsG0480020825.01.T01	AT5G60450	59.661	766	255	15	52	803	63	788	0.0	830
MsG0480020825.01.T01	AT2G33860	49.206	504	180	13	53	545	53	491	4.22e-139	424
MsG0480020825.01.T01	AT5G62000	50.518	386	159	5	52	427	59	422	2.84e-128	404
MsG0480020825.01.T01	AT5G62000	52.830	106	50	0	663	768	722	827	2.61e-29	125
MsG0480020825.01.T01	AT5G62000	50.518	386	159	5	52	427	59	422	2.84e-128	404
MsG0480020825.01.T01	AT5G62000	52.830	106	50	0	663	768	722	827	2.61e-29	125
MsG0480020825.01.T01	AT5G62000	50.518	386	159	5	52	427	59	422	2.84e-128	404
MsG0480020825.01.T01	AT5G62000	52.830	106	50	0	663	768	722	827	2.61e-29	125
MsG0480020825.01.T01	AT5G62000	50.518	386	159	5	52	427	59	422	2.84e-128	404

Showing 1 to 10 of 90 entries

Previous1 2 3 4 5…9Next

Find 227 sgRNAs with CRISPR-Local

Find 413 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATGCAGATTGAAAACT+AGG	0.485809	4:-49207840	None:intergenic
AAAGAAGTTGAGGAATTAGA+AGG	0.393061	4:+49204879	MsG0480020825.01.T01:CDS
AAAGGCAAGTAAAGCCAATG+TGG	0.622004	4:-49203071	None:intergenic
AAATTTCGCCATATTTATAG+AGG	0.488170	4:+49205619	MsG0480020825.01.T01:CDS
AACACGCCATCGATAGTGGC+AGG	0.488155	4:+49207948	MsG0480020825.01.T01:CDS
AACCAAAAGAATCTTGTTTC+TGG	0.233692	4:+49205772	MsG0480020825.01.T01:CDS
AACCTCATCATTCTCCTTGT+TGG	0.359424	4:-49204070	None:intergenic
AACCTGGCATCAACTGGAAT+AGG	0.466535	4:+49207654	MsG0480020825.01.T01:CDS
AACCTTGTCCCTATACTCAC+TGG	0.465299	4:-49206622	None:intergenic
AACTTTCCAAGGGTCTTGCA+AGG	0.597137	4:+49207747	MsG0480020825.01.T01:CDS

Showing 1 to 10 of 227 entries

Previous1 2 3 4 5…23Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAACATGCAGATTGAAAACT+AGG	-	Chr4:49207843-49207862	None:intergenic	30.0%
AAAGAACCTAAAAAGTTGAC+CGG	-	Chr4:49204287-49204306	None:intergenic	30.0%
AAAGAAGTTGAGGAATTAGA+AGG	+	Chr4:49204879-49204898	MsG0480020825.01.T01:CDS	30.0%
AAGTATGTTCTTTCCTAGTT+TGG	-	Chr4:49206037-49206056	None:intergenic	30.0%
AATAGGCTGAAAACAACTTA+TGG	-	Chr4:49205222-49205241	None:intergenic	30.0%
AATCTCAAGTTTGATTCCAT+CGG	-	Chr4:49206153-49206172	None:intergenic	30.0%
AATTCAAAAAGTTGAGGCTA+TGG	-	Chr4:49203322-49203341	None:intergenic	30.0%
ACACAATTCTCAAGAGATAT+TGG	-	Chr4:49209360-49209379	None:intergenic	30.0%
ACTTCTTAGAGATTCTGATA+AGG	+	Chr4:49208398-49208417	MsG0480020825.01.T01:CDS	30.0%
AGATAAGAAGAAGAAACAAG+TGG	-	Chr4:49203602-49203621	None:intergenic	30.0%

Showing 1 to 10 of 413 entries

Previous1 2 3 4 5…42Next

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	49203073	49209464	49203073	ID=MsG0480020825.01;Name=MsG0480020825.01
Chr4	mRNA	49203073	49209464	49203073	ID=MsG0480020825.01.T01;Parent=MsG0480020825.01;Name=MsG0480020825.01.T01;_AED=0.27;_eAED=0.27;_QI=391\|0.81\|0.83\|1\|0.81\|0.83\|12\|299\|803
Chr4	exon	49203073	49203805	49203073	ID=MsG0480020825.01.T01:exon:17697;Parent=MsG0480020825.01.T01
Chr4	exon	49204069	49204125	49204069	ID=MsG0480020825.01.T01:exon:17698;Parent=MsG0480020825.01.T01
Chr4	exon	49204855	49205040	49204855	ID=MsG0480020825.01.T01:exon:17699;Parent=MsG0480020825.01.T01
Chr4	exon	49205556	49205640	49205556	ID=MsG0480020825.01.T01:exon:17700;Parent=MsG0480020825.01.T01
Chr4	exon	49205725	49205821	49205725	ID=MsG0480020825.01.T01:exon:17701;Parent=MsG0480020825.01.T01
Chr4	exon	49206261	49206425	49206261	ID=MsG0480020825.01.T01:exon:17702;Parent=MsG0480020825.01.T01
Chr4	exon	49206564	49206683	49206564	ID=MsG0480020825.01.T01:exon:17703;Parent=MsG0480020825.01.T01
Chr4	exon	49206770	49206848	49206770	ID=MsG0480020825.01.T01:exon:17704;Parent=MsG0480020825.01.T01
Chr4	exon	49207067	49207271	49207067	ID=MsG0480020825.01.T01:exon:17705;Parent=MsG0480020825.01.T01
Chr4	exon	49207502	49208199	49207502	ID=MsG0480020825.01.T01:exon:17706;Parent=MsG0480020825.01.T01
Chr4	exon	49208294	49208484	49208294	ID=MsG0480020825.01.T01:exon:17707;Parent=MsG0480020825.01.T01
Chr4	exon	49208979	49209464	49208979	ID=MsG0480020825.01.T01:exon:17708;Parent=MsG0480020825.01.T01
Chr4	five_prime_UTR	49203073	49203463	49203073	ID=MsG0480020825.01.T01:five_prime_utr;Parent=MsG0480020825.01.T01
Chr4	CDS	49203464	49203805	49203464	ID=MsG0480020825.01.T01:cds;Parent=MsG0480020825.01.T01
Chr4	CDS	49204069	49204125	49204069	ID=MsG0480020825.01.T01:cds;Parent=MsG0480020825.01.T01
Chr4	CDS	49204855	49205040	49204855	ID=MsG0480020825.01.T01:cds;Parent=MsG0480020825.01.T01
Chr4	CDS	49205556	49205640	49205556	ID=MsG0480020825.01.T01:cds;Parent=MsG0480020825.01.T01
Chr4	CDS	49205725	49205821	49205725	ID=MsG0480020825.01.T01:cds;Parent=MsG0480020825.01.T01
Chr4	CDS	49206261	49206425	49206261	ID=MsG0480020825.01.T01:cds;Parent=MsG0480020825.01.T01
Chr4	CDS	49206564	49206683	49206564	ID=MsG0480020825.01.T01:cds;Parent=MsG0480020825.01.T01
Chr4	CDS	49206770	49206848	49206770	ID=MsG0480020825.01.T01:cds;Parent=MsG0480020825.01.T01
Chr4	CDS	49207067	49207271	49207067	ID=MsG0480020825.01.T01:cds;Parent=MsG0480020825.01.T01
Chr4	CDS	49207502	49208199	49207502	ID=MsG0480020825.01.T01:cds;Parent=MsG0480020825.01.T01
Chr4	CDS	49208294	49208484	49208294	ID=MsG0480020825.01.T01:cds;Parent=MsG0480020825.01.T01
Chr4	CDS	49208979	49209165	49208979	ID=MsG0480020825.01.T01:cds;Parent=MsG0480020825.01.T01
Chr4	three_prime_UTR	49209166	49209464	49209166	ID=MsG0480020825.01.T01:three_prime_utr;Parent=MsG0480020825.01.T01

Gene Sequence

>MsG0480020825.01.T01

ATGGAAATTGATCTAAACAATGAAGTGATTGAGGTTGAGAAGAATGCATTGTGCCTTAAGGAATGTGAAAAAGGTTTTTGTTTCTGTGTTTCTTGTTTGTCTCCTTCAACTTGTTCATCTTCAAGTTCAACTTCACCACTTGTTTCTTCTTCTTATCTTGAACTATGGCATGCTTGTGCTGGCCCTCTTACTTCACTTCCTAAGAAAGGAAATGCTGTGGTGTATTTTCCACAAGGTCACTTAGAACAATTTGCTTCTTTTTCTCCTTTTAAACAATTGGAGATACCAAACTATGATCTTCAGCCACAGATCTTTTGCAGGGTTGTCAATGTCCAGCTACTTGCCAACAAGGAGAATGATGAGGTTTATACACAAGTTACTCTGCTACCTCAGGCTGAGTTGGCAGGGATGCATATGGAGGGAAAAGAAGTTGAGGAATTAGAAGGAGATGATGAGGGAGATGGAGGGTCACTTACAAAATCAACCCCTCACATGTTCTGCAAGACACTAACTGTCTCTGATACGAGCACTCATGGTGGATTCTCTGTGCCTCGTAGAGCTGCTGAAGATTGTTTTCCTCCTTTGGATTATAAGCTGCAGAGACCCTCTCAAGAGCTTGTTGCCAAAGACCTGCATGGTGTGGAGTGGAAATTTCGCCATATTTATAGAGGTCAGCCAAGGCGGCATCTACTCACAACTGGCTGGAGCATTTTTGTGAACCAAAAGAATCTTGTTTCTGGTGATGCAGTGCTCTTTCTAAGGTATGTGGGTGAAAATGGAGAGCTGAGATTGGGAATCAGAAGAGCAGTTAGACCTAGAAATGGTCTTCCTGAATCAATTGTCGGTAATCAGAATTGTTATCCCAATTTCCTTTCATCTGTTGCAAATGCTATATCCACCAAAAGCATGTTTCATGTTTTCTATAGTCCAAGAGCAAGTCATGCAGAGTTTGTTGTTCCGTACCAAAAATATGTTAAAAGCATCAAGAATCCAGTGAGTATAGGGACAAGGTTCAAAATGAGAATTGAAATGGATGAATCACCAGAAAGAAGGTGTAGTAGTGGTATGTTGATTGGAATAAATGATTTGGATCCCTATAGATGGCCTAAATCAAAATGGAGGTGCTTGATGGTAAGATGGGATGAGGATACTGAGACTAATCATCAAGACCGAGTATCGCCATGGGAGATCGATCTTTCTTCTCCTCAGCCTCCCCTAAGCATTCAATCTTCCCCAAGACTGAAGCAACCGCGGACCGGTCTACTGGTTACCTCACCCAATCACCTCATCACTGGTATGAATCCTAATGGTGAGATGGTATGCTTACTTCTGCTTAGAATCAGTGGAATGATGGGCTTTGAGGAGTCAGTAAGATCACCAAAGGTCTTGCAAGGTCAAGAAAATACAGGTTTTATGTCACTATACTATGGATGTGACAAAGTAACCAACCAGCCAGGTTTTGAGTTGAGCACTTCAAGTCATCATCAAAACCTGGCATCAACTGGAATAGGAAAAGTAGTTACATCCTCTGAGCTTATGAGTGTTAATCCTTTCAGTTATGCAGGCTTTATGGAAAGTAACAACTTTCCAAGGGTCTTGCAAGGTCAAGAAATATGTAAACTGAAATCCCTTTCAGGAAAAGCTGATTTCAACATCGGAGCTTGGGGAACCAAGCCTAGTTTTCAATCTGCATGTTTTCCTTACGGAGATATTGACAAAGCTAATCAAGCTAATATTTTTAGCTCAAAACACACCAATTTCATGAGTGATAATGTGCCGTTTAACACGCCATCGATAGTGGCAGGGAACATTAGAAAAGAAGTTGGAAGATCTGGATCTAATCTCCTCCCAGATGAGCATAAGCTGCAGGACAATGTTTCTGCTTCTGCTTCATTAGGGGATACGGATATAAATGCTCCAAATGATAAAAATGTCAAGGGAAAGGCAAATTCCTGCAAACTATTCGGCTTTCCTTTGTCTGGCGAACCTGGTAGCCAAAATTTACAGAACACGGCAAAAAGGAGTTGCACAAAGGTTCACAAGCAAGGAAGCTTAGTTGGAAGAGCCATTGACCTCTCTAGGTTGAGCGGCTACAATGATCTTCTGAGTGAACTGGAGAAACTATTTGGCATGGAAGGACTTCTTAGAGATTCTGATAAGGGATGGAGGATCCTTTACACTGACAGTGAGAATGACATAATGGTTGTGGGGGATGATCCATGGCATGAGTTTTGTGATGTGGTGTCTAAAATCCATATATATACCAAAGAAGAAGTGGAGAAGATGACATTTGGGATGATGACCAATGATGATACTCATAGCTGTTTGGATCAGGCACCAGTTATTATTGAACCTTCAAAGTCTTCCTCAGTTGGTCAGCCAGATTATTCTCCAACAGTAGTTAGAGTCTAA

Protein sequence

>MsG0480020825.01.T01

MEIDLNNEVIEVEKNALCLKECEKGFCFCVSCLSPSTCSSSSSTSPLVSSSYLELWHACAGPLTSLPKKGNAVVYFPQGHLEQFASFSPFKQLEIPNYDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQAELAGMHMEGKEVEELEGDDEGDGGSLTKSTPHMFCKTLTVSDTSTHGGFSVPRRAAEDCFPPLDYKLQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVNQKNLVSGDAVLFLRYVGENGELRLGIRRAVRPRNGLPESIVGNQNCYPNFLSSVANAISTKSMFHVFYSPRASHAEFVVPYQKYVKSIKNPVSIGTRFKMRIEMDESPERRCSSGMLIGINDLDPYRWPKSKWRCLMVRWDEDTETNHQDRVSPWEIDLSSPQPPLSIQSSPRLKQPRTGLLVTSPNHLITGMNPNGEMVCLLLLRISGMMGFEESVRSPKVLQGQENTGFMSLYYGCDKVTNQPGFELSTSSHHQNLASTGIGKVVTSSELMSVNPFSYAGFMESNNFPRVLQGQEICKLKSLSGKADFNIGAWGTKPSFQSACFPYGDIDKANQANIFSSKHTNFMSDNVPFNTPSIVAGNIRKEVGRSGSNLLPDEHKLQDNVSASASLGDTDINAPNDKNVKGKANSCKLFGFPLSGEPGSQNLQNTAKRSCTKVHKQGSLVGRAIDLSRLSGYNDLLSELEKLFGMEGLLRDSDKGWRILYTDSENDIMVVGDDPWHEFCDVVSKIHIYTKEEVEKMTFGMMTNDDTHSCLDQAPVIIEPSKSSSVGQPDYSPTVVRV*