Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080047899.01.T01 | XP_013455085.1 | 99.095 | 221 | 2 | 0 | 1 | 221 | 1 | 221 | 7.32E-164 | 461 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080047899.01.T01 | O22152 | 69.194 | 211 | 57 | 5 | 19 | 221 | 19 | 229 | 5.34E-95 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080047899.01.T01 | A0A072UJ49 | 99.095 | 221 | 2 | 0 | 1 | 221 | 1 | 221 | 3.50e-164 | 461 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0080047899.01.T01 | TF | C2C2-YABBY |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047899.01 | MsG0080048152.01 | 0.807657 | 4.541004e-50 | 2.543674e-47 |
| MsG0080047899.01 | MsG0080049040.01 | 0.825707 | 4.048205e-54 | 3.718350e-51 |
| MsG0080047899.01 | MsG0080049068.01 | 0.833437 | 5.334964e-56 | 6.143995e-53 |
| MsG0080047899.01 | MsG0180000038.01 | 0.825389 | 4.813207e-54 | 4.381010e-51 |
| MsG0080047899.01 | MsG0180000292.01 | 0.816593 | 5.104064e-52 | 3.632043e-49 |
| MsG0080047899.01 | MsG0180000354.01 | 0.818457 | 1.940932e-52 | 1.453748e-49 |
| MsG0080047899.01 | MsG0180000355.01 | 0.828459 | 8.884018e-55 | 8.836193e-52 |
| MsG0080047899.01 | MsG0180000404.01 | 0.897352 | 1.527811e-76 | 1.719445e-72 |
| MsG0080047899.01 | MsG0180000670.01 | 0.800470 | 1.419811e-48 | 6.616188e-46 |
| MsG0080047899.01 | MsG0180001085.01 | 0.808559 | 2.917676e-50 | 1.673530e-47 |
| MsG0080047899.01 | MsG0180001270.01 | 0.815360 | 9.620760e-52 | 6.618911e-49 |
| MsG0080047899.01 | MsG0180002929.01 | 0.801850 | 7.413504e-49 | 3.577546e-46 |
| MsG0080047899.01 | MsG0180003353.01 | 0.801612 | 8.295944e-49 | 3.979073e-46 |
| MsG0080047899.01 | MsG0180003741.01 | 0.894385 | 2.592598e-75 | 2.571782e-71 |
| MsG0080047899.01 | MsG0180004046.01 | 0.811424 | 7.050946e-51 | 4.363035e-48 |
| MsG0080047899.01 | MsG0180004115.01 | 0.833986 | 3.891354e-56 | 4.556077e-53 |
| MsG0080047899.01 | MsG0180004192.01 | 0.810654 | 1.035203e-50 | 6.276200e-48 |
| MsG0080047899.01 | MsG0180004276.01 | 0.842105 | 3.168259e-58 | 4.753934e-55 |
| MsG0080047899.01 | MsG0180004466.01 | 0.806407 | 8.352588e-50 | 4.529812e-47 |
| MsG0080047899.01 | MsG0180004493.01 | 0.800887 | 1.167249e-48 | 5.497595e-46 |
| MsG0080047899.01 | MsG0180004605.01 | -0.828406 | 9.152625e-55 | 9.089205e-52 |
| MsG0080047899.01 | MsG0180005113.01 | 0.830031 | 3.692789e-55 | 3.844925e-52 |
| MsG0080047899.01 | MsG0180005485.01 | 0.819706 | 1.009106e-52 | 7.823645e-50 |
| MsG0080047899.01 | MsG0180005964.01 | 0.800509 | 1.394254e-48 | 6.503597e-46 |
| MsG0080047899.01 | MsG0180006031.01 | 0.806497 | 7.991983e-50 | 4.344388e-47 |
| MsG0080047899.01 | MsG0280007062.01 | 0.810681 | 1.021293e-50 | 6.196425e-48 |
| MsG0080047899.01 | MsG0280007075.01 | 0.821037 | 4.994280e-53 | 4.018526e-50 |
| MsG0080047899.01 | MsG0280007432.01 | 0.802399 | 5.715083e-49 | 2.796865e-46 |
| MsG0080047899.01 | MsG0280007750.01 | 0.810957 | 8.902119e-51 | 5.441446e-48 |
| MsG0080047899.01 | MsG0280008388.01 | 0.820313 | 7.326624e-53 | 5.777064e-50 |
| MsG0080047899.01 | MsG0280008390.01 | 0.853455 | 2.362294e-61 | 5.107374e-58 |
| MsG0080047899.01 | MsG0280008392.01 | 0.800796 | 1.218092e-48 | 5.723438e-46 |
| MsG0080047899.01 | MsG0280008394.01 | 0.842947 | 1.894607e-58 | 2.918320e-55 |
| MsG0080047899.01 | MsG0280008397.01 | 0.804007 | 2.656236e-49 | 1.354499e-46 |
| MsG0080047899.01 | MsG0280008418.01 | 0.814496 | 1.495828e-51 | 1.005314e-48 |
| MsG0080047899.01 | MsG0280008451.01 | 0.827130 | 1.853731e-54 | 1.773538e-51 |
| MsG0080047899.01 | MsG0280010503.01 | 0.829043 | 6.419637e-55 | 6.493824e-52 |
| MsG0080047899.01 | MsG0380015352.01 | 0.802335 | 5.891083e-49 | 2.878258e-46 |
| MsG0080047899.01 | MsG0380015399.01 | 0.836319 | 1.003104e-56 | 1.259815e-53 |
| MsG0080047899.01 | MsG0380016192.01 | 0.851364 | 9.314285e-61 | 1.880984e-57 |
| MsG0080047899.01 | MsG0380016864.01 | 0.808125 | 3.612215e-50 | 2.048429e-47 |
| MsG0080047899.01 | MsG0380017087.01 | 0.844629 | 6.717711e-59 | 1.091068e-55 |
| MsG0080047899.01 | MsG0380017088.01 | 0.826783 | 2.244363e-54 | 2.125571e-51 |
| MsG0080047899.01 | MsG0380017094.01 | -0.813786 | 2.145633e-51 | 1.414460e-48 |
| MsG0080047899.01 | MsG0380017703.01 | 0.821017 | 5.048564e-53 | 4.059898e-50 |
| MsG0080047899.01 | MsG0380017785.01 | 0.805451 | 1.326384e-49 | 7.019712e-47 |
| MsG0080047899.01 | MsG0380018069.01 | 0.806451 | 8.172875e-50 | 4.437617e-47 |
| MsG0080047899.01 | MsG0480018200.01 | 0.814617 | 1.406215e-51 | 9.481432e-49 |
| MsG0080047899.01 | MsG0480018644.01 | 0.825642 | 4.192766e-54 | 3.844006e-51 |
| MsG0080047899.01 | MsG0480019221.01 | 0.906061 | 2.217643e-80 | 3.693052e-76 |
| MsG0080047899.01 | MsG0480019340.01 | 0.868347 | 6.984955e-66 | 2.518331e-62 |
| MsG0080047899.01 | MsG0480020315.01 | 0.866820 | 2.156135e-65 | 7.366495e-62 |
| MsG0080047899.01 | MsG0480020517.01 | 0.877358 | 6.697785e-69 | 3.358340e-65 |
| MsG0080047899.01 | MsG0480020690.01 | 0.836853 | 7.336936e-57 | 9.361915e-54 |
| MsG0080047899.01 | MsG0480020783.01 | 0.809543 | 1.796308e-50 | 1.057637e-47 |
| MsG0080047899.01 | MsG0480020890.01 | 0.821372 | 4.182261e-53 | 3.396178e-50 |
| MsG0080047899.01 | MsG0480021768.01 | 0.812652 | 3.805688e-51 | 2.433392e-48 |
| MsG0080047899.01 | MsG0480021814.01 | 0.838947 | 2.124471e-57 | 2.889813e-54 |
| MsG0080047899.01 | MsG0480021815.01 | 0.801047 | 1.082525e-48 | 5.119349e-46 |
| MsG0080047899.01 | MsG0480022149.01 | 0.805942 | 1.046104e-49 | 5.606777e-47 |
| MsG0080047899.01 | MsG0480022586.01 | 0.839298 | 1.722903e-57 | 2.369021e-54 |
| MsG0080047899.01 | MsG0480022587.01 | 0.824753 | 6.805310e-54 | 6.083415e-51 |
| MsG0080047899.01 | MsG0480022647.01 | 0.804551 | 2.046202e-49 | 1.058071e-46 |
| MsG0080047899.01 | MsG0480023314.01 | 0.813999 | 1.926046e-51 | 1.277036e-48 |
| MsG0080047899.01 | MsG0480023661.01 | 0.816566 | 5.176787e-52 | 3.681015e-49 |
| MsG0080047899.01 | MsG0580024443.01 | 0.822837 | 1.913394e-53 | 1.619825e-50 |
| MsG0080047899.01 | MsG0580024619.01 | 0.808663 | 2.772647e-50 | 1.594609e-47 |
| MsG0080047899.01 | MsG0580024966.01 | 0.842231 | 2.934688e-58 | 4.420431e-55 |
| MsG0080047899.01 | MsG0580025411.01 | 0.830048 | 3.656110e-55 | 3.808684e-52 |
| MsG0080047899.01 | MsG0580025449.01 | 0.831923 | 1.267301e-55 | 1.395327e-52 |
| MsG0080047899.01 | MsG0580025502.01 | 0.821861 | 3.223042e-53 | 2.653813e-50 |
| MsG0080047899.01 | MsG0580025607.01 | 0.877613 | 5.460927e-69 | 2.763070e-65 |
| MsG0080047899.01 | MsG0580025668.01 | 0.870248 | 1.683806e-66 | 6.505701e-63 |
| MsG0080047899.01 | MsG0580025828.01 | 0.859308 | 4.525542e-63 | 1.189866e-59 |
| MsG0080047899.01 | MsG0580025971.01 | 0.827007 | 1.983837e-54 | 1.891178e-51 |
| MsG0080047899.01 | MsG0580026175.01 | 0.800307 | 1.532366e-48 | 7.111864e-46 |
| MsG0080047899.01 | MsG0580026179.01 | 0.872809 | 2.389847e-67 | 1.013647e-63 |
| MsG0080047899.01 | MsG0580026206.01 | 0.811670 | 6.233896e-51 | 3.882251e-48 |
| MsG0080047899.01 | MsG0580027394.01 | 0.806391 | 8.417320e-50 | 4.563058e-47 |
| MsG0080047899.01 | MsG0580027726.01 | 0.805570 | 1.252623e-49 | 6.649346e-47 |
| MsG0080047899.01 | MsG0580027763.01 | 0.850644 | 1.486425e-60 | 2.931350e-57 |
| MsG0080047899.01 | MsG0580028335.01 | 0.807622 | 4.620088e-50 | 2.585611e-47 |
| MsG0080047899.01 | MsG0580029310.01 | 0.860973 | 1.421793e-63 | 3.958432e-60 |
| MsG0080047899.01 | MsG0580029529.01 | 0.802518 | 5.400616e-49 | 2.650776e-46 |
| MsG0080047899.01 | MsG0580029736.01 | 0.812716 | 3.686548e-51 | 2.361176e-48 |
| MsG0080047899.01 | MsG0680030784.01 | 0.879742 | 9.717765e-70 | 5.329765e-66 |
| MsG0080047899.01 | MsG0680030908.01 | 0.873051 | 1.982992e-67 | 8.486254e-64 |
| MsG0080047899.01 | MsG0680031010.01 | 0.828005 | 1.143484e-54 | 1.122369e-51 |
| MsG0080047899.01 | MsG0680031469.01 | 0.819489 | 1.130900e-52 | 8.715134e-50 |
| MsG0080047899.01 | MsG0680031716.01 | -0.806961 | 6.377874e-50 | 3.508597e-47 |
| MsG0080047899.01 | MsG0680031959.01 | 0.835602 | 1.525428e-56 | 1.874483e-53 |
| MsG0080047899.01 | MsG0680032651.01 | 0.814374 | 1.591435e-51 | 1.066011e-48 |
| MsG0080047899.01 | MsG0680033377.01 | 0.831435 | 1.671682e-55 | 1.813871e-52 |
| MsG0080047899.01 | MsG0680034064.01 | 0.817255 | 3.626172e-52 | 2.627451e-49 |
| MsG0080047899.01 | MsG0680034750.01 | 0.839798 | 1.277094e-57 | 1.783290e-54 |
| MsG0080047899.01 | MsG0780035992.01 | 0.844260 | 8.439804e-59 | 1.354897e-55 |
| MsG0080047899.01 | MsG0780036243.01 | 0.810580 | 1.074009e-50 | 6.498494e-48 |
| MsG0080047899.01 | MsG0780036307.01 | 0.845815 | 3.209098e-59 | 5.414154e-56 |
| MsG0080047899.01 | MsG0780036979.01 | 0.825379 | 4.839556e-54 | 4.403697e-51 |
| MsG0080047899.01 | MsG0780037157.01 | 0.812067 | 5.107746e-51 | 3.215122e-48 |
| MsG0080047899.01 | MsG0780037341.01 | 0.835879 | 1.297640e-56 | 1.607952e-53 |
| MsG0080047899.01 | MsG0780037395.01 | 0.836227 | 1.058822e-56 | 1.326126e-53 |
| MsG0080047899.01 | MsG0780038351.01 | 0.807799 | 4.237330e-50 | 2.382412e-47 |
| MsG0080047899.01 | MsG0780038784.01 | 0.825387 | 4.819181e-54 | 4.386096e-51 |
| MsG0080047899.01 | MsG0780038846.01 | 0.832211 | 1.075771e-55 | 1.194283e-52 |
| MsG0080047899.01 | MsG0780038847.01 | 0.816986 | 4.167777e-52 | 2.998027e-49 |
| MsG0080047899.01 | MsG0780038948.01 | 0.837192 | 6.010349e-57 | 7.748338e-54 |
| MsG0080047899.01 | MsG0780039675.01 | 0.836670 | 8.168975e-57 | 1.036570e-53 |
| MsG0080047899.01 | MsG0780040286.01 | 0.803615 | 3.203353e-49 | 1.617107e-46 |
| MsG0080047899.01 | MsG0780040430.01 | 0.826526 | 2.584835e-54 | 2.430077e-51 |
| MsG0080047899.01 | MsG0780040431.01 | 0.826039 | 3.375188e-54 | 3.129623e-51 |
| MsG0080047899.01 | MsG0780040443.01 | 0.801343 | 9.415070e-49 | 4.485578e-46 |
| MsG0080047899.01 | MsG0780040846.01 | 0.821602 | 3.700019e-53 | 3.023923e-50 |
| MsG0080047899.01 | MsG0780041259.01 | 0.892917 | 1.019275e-74 | 9.505877e-71 |
| MsG0080047899.01 | MsG0780041698.01 | 0.837084 | 6.402736e-57 | 8.226452e-54 |
| MsG0080047899.01 | MsG0880041947.01 | 0.802567 | 5.278051e-49 | 2.593852e-46 |
| MsG0080047899.01 | MsG0880042890.01 | 0.812101 | 5.021042e-51 | 3.163506e-48 |
| MsG0080047899.01 | MsG0880042958.01 | 0.842139 | 3.104100e-58 | 4.662306e-55 |
| MsG0080047899.01 | MsG0880042959.01 | 0.816392 | 5.663485e-52 | 4.008004e-49 |
| MsG0080047899.01 | MsG0880043174.01 | 0.817380 | 3.397526e-52 | 2.470452e-49 |
| MsG0080047899.01 | MsG0880044142.01 | 0.802887 | 4.531932e-49 | 2.245535e-46 |
| MsG0080047899.01 | MsG0880044392.01 | 0.820516 | 6.580469e-53 | 5.217828e-50 |
| MsG0080047899.01 | MsG0880044704.01 | 0.883676 | 3.667696e-71 | 2.348565e-67 |
| MsG0080047899.01 | MsG0880045101.01 | 0.829760 | 4.297064e-55 | 4.440211e-52 |
| MsG0080047899.01 | MsG0880045558.01 | 0.834278 | 3.287735e-56 | 3.883133e-53 |
| MsG0080047899.01 | MsG0880045585.01 | 0.805022 | 1.631280e-49 | 8.538453e-47 |
| MsG0080047899.01 | MsG0880046765.01 | 0.804320 | 2.286461e-49 | 1.175310e-46 |
| MsG0080047899.01 | MsG0880046820.01 | 0.807126 | 5.886775e-50 | 3.252161e-47 |
| MsG0080047899.01 | MsG0880046867.01 | 0.804887 | 1.740912e-49 | 9.081778e-47 |
| MsG0080047899.01 | MsG0880047168.01 | 0.828463 | 8.864504e-55 | 8.817713e-52 |
| MsG0080047899.01 | MsG0880047422.01 | -0.812724 | 3.671173e-51 | 2.351908e-48 |
| MsG0080047899.01 | MsG0880047442.01 | 0.818861 | 1.571135e-52 | 1.189975e-49 |
| MsG0080047899.01 | MsG0880047703.01 | 0.806368 | 8.508985e-50 | 4.610166e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0080047899.01 | MsG0480020825.01 | PPI |
| MsG0080047899.01 | MsG0480022313.01 | PPI |
| MsG0080047899.01 | MsG0280006783.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080047899.01.T01 | MTR_4g025900 | 99.095 | 221 | 2 | 0 | 1 | 221 | 1 | 221 | 8.87e-168 | 461 |
| MsG0080047899.01.T01 | MTR_4g101660 | 70.335 | 209 | 54 | 6 | 18 | 221 | 13 | 218 | 8.05e-92 | 268 |
| MsG0080047899.01.T01 | MTR_4g114730 | 54.255 | 188 | 70 | 5 | 20 | 206 | 11 | 183 | 1.35e-59 | 186 |
| MsG0080047899.01.T01 | MTR_2g087740 | 49.519 | 208 | 70 | 8 | 19 | 211 | 8 | 195 | 1.52e-56 | 178 |
| MsG0080047899.01.T01 | MTR_4g050300 | 55.215 | 163 | 62 | 3 | 22 | 184 | 8 | 159 | 9.52e-51 | 163 |
| MsG0080047899.01.T01 | MTR_5g034030 | 50.625 | 160 | 67 | 5 | 23 | 179 | 12 | 162 | 9.00e-45 | 149 |
| MsG0080047899.01.T01 | MTR_5g046230 | 46.250 | 160 | 66 | 4 | 21 | 178 | 14 | 155 | 9.11e-38 | 131 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080047899.01.T01 | AT2G45190 | 69.194 | 211 | 57 | 5 | 19 | 221 | 19 | 229 | 5.44e-96 | 280 |
| MsG0080047899.01.T01 | AT4G00180 | 62.232 | 233 | 60 | 10 | 8 | 219 | 13 | 238 | 2.04e-80 | 240 |
| MsG0080047899.01.T01 | AT4G00180 | 61.244 | 209 | 58 | 9 | 32 | 219 | 1 | 207 | 5.68e-68 | 208 |
| MsG0080047899.01.T01 | AT2G45190 | 65.455 | 165 | 49 | 5 | 65 | 221 | 1 | 165 | 2.14e-65 | 199 |
| MsG0080047899.01.T01 | AT2G26580 | 57.485 | 167 | 49 | 5 | 22 | 186 | 8 | 154 | 2.01e-56 | 177 |
| MsG0080047899.01.T01 | AT2G26580 | 57.485 | 167 | 49 | 5 | 22 | 186 | 8 | 154 | 2.01e-56 | 177 |
| MsG0080047899.01.T01 | AT1G08465 | 56.897 | 174 | 51 | 5 | 22 | 188 | 7 | 163 | 7.49e-56 | 176 |
| MsG0080047899.01.T01 | AT1G23420 | 46.584 | 161 | 84 | 2 | 24 | 182 | 20 | 180 | 1.00e-39 | 136 |
| MsG0080047899.01.T01 | AT1G23420 | 46.584 | 161 | 84 | 2 | 24 | 182 | 51 | 211 | 4.90e-39 | 135 |
| MsG0080047899.01.T01 | AT1G69180 | 40.994 | 161 | 69 | 3 | 22 | 178 | 18 | 156 | 6.77e-31 | 112 |
Find 73 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTCAAGTTGTTGGTTTA+TGG | 0.128435 | contig140end:+21751 | MsG0080047899.01.T01:three_prime_UTR |
| CTATTAGCAGGTGGAGGTTT+AGG | 0.195251 | contig140end:-19365 | MsG0080047899.01.T01:intergenic |
| CGATGCTACTTAAGTATTAA+AGG | 0.214516 | contig140end:-18259 | MsG0080047899.01.T01:intergenic |
| CACTTTCCACACATTCATTT+CGG | 0.297543 | contig140end:+21341 | MsG0080047899.01.T01:CDS |
| AGAGTTGTTGCTGTTGTTGC+TGG | 0.315337 | contig140end:-18541 | None:intergenic |
| GACTGATCGGTGAAGTTTCT+TGG | 0.321139 | contig140end:-18400 | None:intergenic |
| AAAGAAGGAAAAGACTTTCT+AGG | 0.330189 | contig140end:+18226 | None:intergenic |
| TATTAGCAGGTGGAGGTTTA+GGG | 0.330394 | contig140end:-19364 | MsG0080047899.01.T01:intergenic |
| ATCATCAAATCATTTGGATT+TGG | 0.331826 | contig140end:-19308 | MsG0080047899.01.T01:intergenic |
| GCCTCTCTGTGGCTTATATC+AGG | 0.334060 | contig140end:-21109 | MsG0080047899.01.T01:intergenic |
| TTCTTCACGGGTTGATGATC+AGG | 0.349751 | contig140end:-21371 | MsG0080047899.01.T01:intergenic |
| AACAAACACACTTATTTAGT+AGG | 0.362870 | contig140end:-21615 | MsG0080047899.01.T01:intergenic |
| GTGTTTATCATCAAATCATT+TGG | 0.377356 | contig140end:-19314 | MsG0080047899.01.T01:intergenic |
| TGTCCAAGGTGAAGCTGATT+AGG | 0.385355 | contig140end:-18838 | MsG0080047899.01.T01:intergenic |
| TGATTGTTAAGTTACTGTTT+AGG | 0.410029 | contig140end:-18324 | MsG0080047899.01.T01:intergenic |
| TGTTGCTGTTGTTGCTGGTC+CGG | 0.423782 | contig140end:-18536 | MsG0080047899.01.T01:intergenic |
| GAGGACGTGCTTATGAAAGA+TGG | 0.432558 | contig140end:+21560 | MsG0080047899.01.T01:CDS |
| GGGAGATAAATATGAAAGAA+AGG | 0.452324 | contig140end:-18298 | MsG0080047899.01.T01:intergenic |
| TTCATCATCATGTTTGTTGA+AGG | 0.455442 | contig140end:-19278 | MsG0080047899.01.T01:intergenic |
| TTGGTTTATGGTATAATGAA+TGG | 0.468807 | contig140end:+21763 | MsG0080047899.01.T01:three_prime_UTR |
| ACTGATCGGTGAAGTTTCTT+GGG | 0.474087 | contig140end:-18399 | MsG0080047899.01.T01:intergenic |
| GAGATCCAACGTATCAAAGC+TGG | 0.478771 | contig140end:+21082 | MsG0080047899.01.T01:CDS |
| ACACATACCATAAAAGTTTG+AGG | 0.479960 | contig140end:-18874 | MsG0080047899.01.T01:intergenic |
| TGTTAAGTTACTGTTTAGGA+AGG | 0.483028 | contig140end:-18320 | MsG0080047899.01.T01:intergenic |
| GGAGATAAATATGAAAGAAA+GGG | 0.484482 | contig140end:-18297 | MsG0080047899.01.T01:intergenic |
| ACAAACACACTTATTTAGTA+GGG | 0.484895 | contig140end:-21614 | MsG0080047899.01.T01:intergenic |
| GAAGAAAGCTAATGTTCGTC+AGG | 0.494623 | contig140end:+21388 | MsG0080047899.01.T01:CDS |
| CGAACATTAGCTTTCTTCAC+GGG | 0.494923 | contig140end:-21383 | MsG0080047899.01.T01:intergenic |
| AATTCTTCTGAAAATCAAGA+TGG | 0.500730 | contig140end:+21823 | MsG0080047899.01.T01:three_prime_UTR |
| GGAACTCTCTGTCTCTTCTC+CGG | 0.501243 | contig140end:-20476 | MsG0080047899.01.T01:intergenic |
| CGAAATGAATGTGTGGAAAG+TGG | 0.502844 | contig140end:-21340 | MsG0080047899.01.T01:intergenic |
| AAATTCTTACGTCTATTAGC+AGG | 0.507918 | contig140end:-19377 | MsG0080047899.01.T01:intergenic |
| TTGTTGCTGGTCCGGTGAAA+AGG | 0.508490 | contig140end:-18528 | MsG0080047899.01.T01:intergenic |
| TTAAGTTACTGTTTAGGAAG+GGG | 0.512648 | contig140end:-18318 | MsG0080047899.01.T01:intergenic |
| GGTATAATGAATGGTGGGAG+AGG | 0.513224 | contig140end:+21772 | MsG0080047899.01.T01:three_prime_UTR |
| ACAGCAACAACTCTCTCCTT+CGG | 0.518591 | contig140end:+18550 | MsG0080047899.01.T01:CDS |
| TGCAATGGACATAACAAAGC+TGG | 0.526911 | contig140end:-18574 | MsG0080047899.01.T01:intergenic |
| CCATAAACCAACAACTTGAA+AGG | 0.529902 | contig140end:-21751 | MsG0080047899.01.T01:intergenic |
| GTTTATGGTATAATGAATGG+TGG | 0.530292 | contig140end:+21766 | MsG0080047899.01.T01:three_prime_UTR |
| ATTAAACTTACTTGATGAAG+CGG | 0.531165 | contig140end:-20511 | MsG0080047899.01.T01:intergenic |
| ACGAACATTAGCTTTCTTCA+CGG | 0.533864 | contig140end:-21384 | MsG0080047899.01.T01:intergenic |
| AGGTGAAGCTGATTAGGAGC+AGG | 0.535879 | contig140end:-18832 | MsG0080047899.01.T01:intergenic |
| GTTAAGTTACTGTTTAGGAA+GGG | 0.540423 | contig140end:-18319 | MsG0080047899.01.T01:intergenic |
| GATTGATGGGATTGACTGAT+CGG | 0.541543 | contig140end:-18413 | MsG0080047899.01.T01:intergenic |
| CTGGTCCGGTGAAAAGGAAG+TGG | 0.549720 | contig140end:-18522 | MsG0080047899.01.T01:intergenic |
| AGGACGTGCTTATGAAAGAT+GGG | 0.553995 | contig140end:+21561 | MsG0080047899.01.T01:CDS |
| TTTCATTGTGTAGGATTCAG+AGG | 0.560695 | contig140end:+21541 | MsG0080047899.01.T01:intron |
| ATGAAGCGGTTGTAAGCAGA+TGG | 0.561893 | contig140end:-20497 | MsG0080047899.01.T01:intergenic |
| TTACGTCTATTAGCAGGTGG+AGG | 0.562563 | contig140end:-19371 | MsG0080047899.01.T01:intergenic |
| GCTCCTAATCAGCTTCACCT+TGG | 0.572863 | contig140end:+18835 | MsG0080047899.01.T01:CDS |
| GATTCCCAGCTTTGATACGT+TGG | 0.580008 | contig140end:-21087 | MsG0080047899.01.T01:intergenic |
| ACAGTAACTTAACAATCAAG+AGG | 0.585860 | contig140end:+18329 | MsG0080047899.01.T01:five_prime_UTR |
| AAAGGAAGTGGATGATGAAG+AGG | 0.587043 | contig140end:-18510 | MsG0080047899.01.T01:intergenic |
| TTCTTACGTCTATTAGCAGG+TGG | 0.595708 | contig140end:-19374 | MsG0080047899.01.T01:intergenic |
| AGATCCAACGTATCAAAGCT+GGG | 0.600203 | contig140end:+21083 | MsG0080047899.01.T01:CDS |
| ATCAAGAGGATCAGATCCAT+AGG | 0.607359 | contig140end:+18343 | MsG0080047899.01.T01:five_prime_UTR |
| GAAATGAATGTGTGGAAAGT+GGG | 0.615090 | contig140end:-21339 | MsG0080047899.01.T01:intergenic |
| TTGATGATAAACACAATGAG+AGG | 0.619517 | contig140end:+19323 | MsG0080047899.01.T01:CDS |
| CACGCATGTTAACTGAGAGA+AGG | 0.621310 | contig140end:-18798 | MsG0080047899.01.T01:intergenic |
| ATGATAAACACAATGAGAGG+AGG | 0.621427 | contig140end:+19326 | MsG0080047899.01.T01:CDS |
| CATGTTAACTGAGAGAAGGT+TGG | 0.622869 | contig140end:-18794 | MsG0080047899.01.T01:intergenic |
| TGATAAACACAATGAGAGGA+GGG | 0.629056 | contig140end:+19327 | MsG0080047899.01.T01:CDS |
| ACATAACAAAGCTGGTCCGA+AGG | 0.642303 | contig140end:-18566 | MsG0080047899.01.T01:intergenic |
| GATTGAAGTAAGTGTGTCCA+AGG | 0.648511 | contig140end:-18852 | MsG0080047899.01.T01:intergenic |
| GTCTTGAACAAACTTGTGCA+AGG | 0.649953 | contig140end:-18745 | MsG0080047899.01.T01:intergenic |
| TTTATGGTATAATGAATGGT+GGG | 0.650395 | contig140end:+21767 | MsG0080047899.01.T01:three_prime_UTR |
| CAGTGTCACAGAAATTGCAA+TGG | 0.650774 | contig140end:-18589 | MsG0080047899.01.T01:intergenic |
| GAAGCTGATTAGGAGCAGGA+AGG | 0.664477 | contig140end:-18828 | MsG0080047899.01.T01:intergenic |
| TTTCTGTGACACTGTTCTCG+CGG | 0.670363 | contig140end:+18598 | MsG0080047899.01.T01:CDS |
| CTGCACTAAAAGCCTCTCTG+TGG | 0.673003 | contig140end:-21120 | MsG0080047899.01.T01:intergenic |
| AAGACTGTGACAGTGAGATG+TGG | 0.685505 | contig140end:+18763 | MsG0080047899.01.T01:CDS |
| TCCTGATATAAGCCACAGAG+AGG | 0.691291 | contig140end:+21108 | MsG0080047899.01.T01:CDS |
| ATAAGTCCGAAATGAATGTG+TGG | 0.723401 | contig140end:-21347 | MsG0080047898.01.T01:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATAATTTTTAATTTTTAT+TGG | + | contig140end:21233-21252 | MsG0080047899.01.T01:intron | 0.0% |
| !!! | TATAATTTTTAATTTTTATT+GGG | + | contig140end:21234-21253 | MsG0080047899.01.T01:intron | 0.0% |
| !! | AAATTGAAAATAATCTAAAA+TGG | - | contig140end:21204-21223 | MsG0080047899.01.T01:intergenic | 10.0% |
| !! | AGAAAAAAAAAAGAAAAAAA+AGG | - | contig140end:21456-21475 | MsG0080047899.01.T01:intergenic | 10.0% |
| !! | GATAAATTCTTTAAATAATA+GGG | - | contig140end:20610-20629 | MsG0080047899.01.T01:intergenic | 10.0% |
| !! | TGATAAATTCTTTAAATAAT+AGG | - | contig140end:20611-20630 | MsG0080047899.01.T01:intergenic | 10.0% |
| !!! | AATTGAAAATAATCTAAAAT+GGG | - | contig140end:21203-21222 | MsG0080047899.01.T01:intergenic | 10.0% |
| !!! | ACTAAACATTTTTTTTATTA+CGG | + | contig140end:20903-20922 | MsG0080047899.01.T01:intron | 10.0% |
| !!! | CATAAAGTTTTTTATTTTTT+TGG | + | contig140end:20702-20721 | MsG0080047899.01.T01:intron | 10.0% |
| !!! | TTTTCTTTTTTTTTTCTTTT+TGG | + | contig140end:21459-21478 | MsG0080047899.01.T01:intron | 10.0% |
| !!! | TTTTTTATTTTGTTTTTCTT+AGG | + | contig140end:18714-18733 | MsG0080047899.01.T01:intron | 10.0% |
| !! | AAGAAAAATAAATTCATAAG+TGG | - | contig140end:20931-20950 | MsG0080047899.01.T01:intergenic | 15.0% |
| !! | ATATATATATATAGTTTGGT+TGG | - | contig140end:19002-19021 | MsG0080047899.01.T01:intergenic | 15.0% |
| !! | ATCAATTTATGAAATTATCT+AGG | + | contig140end:19079-19098 | MsG0080047899.01.T01:intron | 15.0% |
| !! | ATTTGGAGAAAATATTATAT+TGG | + | contig140end:20788-20807 | MsG0080047899.01.T01:intron | 15.0% |
| !! | CATCATATATATATATAGTT+TGG | - | contig140end:19006-19025 | MsG0080047899.01.T01:intergenic | 15.0% |
| !! | GATAATTCATTTAAATTTAG+TGG | + | contig140end:20968-20987 | MsG0080047899.01.T01:intron | 15.0% |
| !! | GGATTAATTAATTATTATTC+AGG | + | contig140end:19238-19257 | MsG0080047899.01.T01:intron | 15.0% |
| !! | TACTTCAAAATATTTACAAA+AGG | + | contig140end:20140-20159 | MsG0080047899.01.T01:intron | 15.0% |
| !! | TATTTAATGAATCTAAAAAG+TGG | + | contig140end:20078-20097 | MsG0080047899.01.T01:intron | 15.0% |
| !! | TTAATTAATTATTATTCAGG+AGG | + | contig140end:19241-19260 | MsG0080047899.01.T01:intron | 15.0% |
| !! | TTGAAGATTTGTAAATTTAA+TGG | + | contig140end:19032-19051 | MsG0080047899.01.T01:intron | 15.0% |
| !! | TTTAGTATATCAATTGAATT+TGG | + | contig140end:20771-20790 | MsG0080047899.01.T01:intron | 15.0% |
| !!! | ATTTTGCTTAACAAATTTTT+TGG | + | contig140end:19907-19926 | MsG0080047899.01.T01:intron | 15.0% |
| !!! | ATTTTTGTATTTTTGTATTC+TGG | + | contig140end:19151-19170 | MsG0080047899.01.T01:intron | 15.0% |
| !!! | CATTCATTTTAAGTTATTTT+TGG | + | contig140end:20536-20555 | MsG0080047899.01.T01:intron | 15.0% |
| !!! | TGTAAATTTAATGGATTATT+TGG | + | contig140end:19041-19060 | MsG0080047899.01.T01:intron | 15.0% |
| !!! | TTATTTTCTTTTGCTAAAAA+TGG | + | contig140end:20837-20856 | MsG0080047899.01.T01:intron | 15.0% |
| !! | AAAAATCAAGAATTCAGAAA+AGG | + | contig140end:18442-18461 | MsG0080047899.01.T01:five_prime_UTR | 20.0% |
| !! | AATCTTAACTCTTAATCAAA+AGG | - | contig140end:18675-18694 | MsG0080047899.01.T01:intergenic | 20.0% |
| !! | AGAGAAAAATTATAATGATG+AGG | + | contig140end:20325-20344 | MsG0080047899.01.T01:intron | 20.0% |
| !! | AGTAAAAAAAATACTCTCTT+CGG | - | contig140end:20124-20143 | MsG0080047899.01.T01:intergenic | 20.0% |
| !! | ATCTTAACTCTTAATCAAAA+GGG | - | contig140end:18674-18693 | MsG0080047899.01.T01:intergenic | 20.0% |
| !! | TATTCCTTTGTCAAAAAAAA+GGG | - | contig140end:20643-20662 | MsG0080047899.01.T01:intergenic | 20.0% |
| !!! | AAATTTGTTAAGCAAAATGT+TGG | - | contig140end:19905-19924 | MsG0080047899.01.T01:intergenic | 20.0% |
| !!! | ATTTTTGTATTCTGGAAATT+AGG | + | contig140end:19159-19178 | MsG0080047899.01.T01:intron | 20.0% |
| !!! | CAAATGTTTATCTTAGTTTT+CGG | + | contig140end:18935-18954 | MsG0080047899.01.T01:intron | 20.0% |
| !!! | GAAAATCAAATATTTTGTCA+AGG | - | contig140end:21056-21075 | MsG0080047899.01.T01:intergenic | 20.0% |
| !!! | GATTTTTTGATTTGATTGAT+GGG | - | contig140end:18429-18448 | MsG0080047899.01.T01:intergenic | 20.0% |
| !!! | TGATTTTTTGATTTGATTGA+TGG | - | contig140end:18430-18449 | MsG0080047899.01.T01:intergenic | 20.0% |
| !!! | TGTATTATTTTCTCATTTGT+GGG | + | contig140end:21292-21311 | MsG0080047899.01.T01:intron | 20.0% |
| !!! | TTTGTTGATTATGAGAAATT+TGG | + | contig140end:19217-19236 | MsG0080047899.01.T01:intron | 20.0% |
| !!! | TTTTGCTTTTCTTCATTAAT+TGG | - | contig140end:19673-19692 | MsG0080047899.01.T01:intergenic | 20.0% |
| ! | AACAAACACACTTATTTAGT+AGG | - | contig140end:21618-21637 | MsG0080047899.01.T01:intergenic | 25.0% |
| ! | AACTTTCCAAAAATGTTCAA+AGG | - | contig140end:20872-20891 | MsG0080047899.01.T01:intergenic | 25.0% |
| ! | ACAAACACACTTATTTAGTA+GGG | - | contig140end:21617-21636 | MsG0080047899.01.T01:intergenic | 25.0% |
| ! | AGATAGATAAAAACTTCCTA+TGG | - | contig140end:18362-18381 | MsG0080047899.01.T01:intergenic | 25.0% |
| ! | AGTAAGATTCAGAATTTCAT+TGG | - | contig140end:21164-21183 | MsG0080047899.01.T01:intergenic | 25.0% |
| ! | ATCATCAAATCATTTGGATT+TGG | - | contig140end:19311-19330 | MsG0080047899.01.T01:intergenic | 25.0% |
| ! | ATTAAACTTACTTGATGAAG+CGG | - | contig140end:20514-20533 | MsG0080047899.01.T01:intergenic | 25.0% |
| ! | CAAAAAAGAGAAGGAAAAAA+AGG | + | contig140end:19688-19707 | MsG0080047899.01.T01:intron | 25.0% |
| ! | CATATAGCATACATTAGAAA+TGG | - | contig140end:19510-19529 | MsG0080047899.01.T01:intergenic | 25.0% |
| ! | CTAAAATTCTTTCATTGTGT+AGG | + | contig140end:21532-21551 | MsG0080047899.01.T01:intron | 25.0% |
| ! | GGAGATAAATATGAAAGAAA+GGG | - | contig140end:18300-18319 | MsG0080047899.01.T01:intergenic | 25.0% |
| ! | GTATTCCTTTGTCAAAAAAA+AGG | - | contig140end:20644-20663 | MsG0080047899.01.T01:intergenic | 25.0% |
| ! | GTGTTTATCATCAAATCATT+TGG | - | contig140end:19317-19336 | MsG0080047899.01.T01:intergenic | 25.0% |
| ! | TGATTGTTAAGTTACTGTTT+AGG | - | contig140end:18327-18346 | MsG0080047899.01.T01:intergenic | 25.0% |
| ! | TGTTTATAAATGTGATCAGA+GGG | - | contig140end:19988-20007 | MsG0080047899.01.T01:intergenic | 25.0% |
| ! | TTGGTTTATGGTATAATGAA+TGG | + | contig140end:21763-21782 | MsG0080047899.01.T01:three_prime_UTR | 25.0% |
| ! | TTGTTTATAAATGTGATCAG+AGG | - | contig140end:19989-20008 | MsG0080047899.01.T01:intergenic | 25.0% |
| ! | TTTATGGTATAATGAATGGT+GGG | + | contig140end:21767-21786 | MsG0080047899.01.T01:three_prime_UTR | 25.0% |
| !! | AAAGCATAACTCTTATTTCT+AGG | + | contig140end:21498-21517 | MsG0080047899.01.T01:intron | 25.0% |
| !! | AACTCAAAAGAAGTGTAAAA+TGG | - | contig140end:19632-19651 | MsG0080047899.01.T01:intergenic | 25.0% |
| !! | AATTCTTCTGAAAATCAAGA+TGG | + | contig140end:21823-21842 | MsG0080047899.01.T01:three_prime_UTR | 25.0% |
| !! | AGTACACATTTTTATTGCAT+CGG | + | contig140end:21269-21288 | MsG0080047899.01.T01:intron | 25.0% |
| !! | CTACACAATGAAAGAATTTT+AGG | - | contig140end:21534-21553 | MsG0080047899.01.T01:intergenic | 25.0% |
| !! | GTATTATTTTCTCATTTGTG+GGG | + | contig140end:21293-21312 | MsG0080047899.01.T01:intron | 25.0% |
| !! | GTGTATTATTTTCTCATTTG+TGG | + | contig140end:21291-21310 | MsG0080047899.01.T01:intron | 25.0% |
| !! | TTCTTTTGCTAAAAATGGTA+TGG | + | contig140end:20842-20861 | MsG0080047899.01.T01:intron | 25.0% |
| !!! | AAGCATAACTCTTATTTCTA+GGG | + | contig140end:21499-21518 | MsG0080047899.01.T01:intron | 25.0% |
| !!! | ATTTTCAAGTGAGTTTTGAT+AGG | - | contig140end:19721-19740 | MsG0080047899.01.T01:intergenic | 25.0% |
| !!! | GTTAATTTTTGTTGTGCTTA+TGG | + | contig140end:19119-19138 | MsG0080047899.01.T01:intron | 25.0% |
| !!! | TATACAACTATCTTTTGAGT+TGG | + | contig140end:19182-19201 | MsG0080047899.01.T01:intron | 25.0% |
| !!! | TCCATTTATTTTCATTCAGT+GGG | + | contig140end:21316-21335 | MsG0080047899.01.T01:intron | 25.0% |
| !!! | TGTGTTTGTTTTATTGTGTA+GGG | + | contig140end:21628-21647 | MsG0080047899.01.T01:three_prime_UTR | 25.0% |
| !!! | TTTTCAAGTGAGTTTTGATA+GGG | - | contig140end:19720-19739 | MsG0080047899.01.T01:intergenic | 25.0% |
| !!! | TTTTTATCCTTTCAAGTTGT+TGG | + | contig140end:21744-21763 | MsG0080047899.01.T01:three_prime_UTR | 25.0% |
| AAAAATAGAGCTGAATCCAT+TGG | + | contig140end:20290-20309 | MsG0080047899.01.T01:intron | 30.0% | |
| AAATTCTTACGTCTATTAGC+AGG | - | contig140end:19380-19399 | MsG0080047899.01.T01:intergenic | 30.0% | |
| ACACATACCATAAAAGTTTG+AGG | - | contig140end:18877-18896 | MsG0080047899.01.T01:intergenic | 30.0% | |
| ACAGTAACTTAACAATCAAG+AGG | + | contig140end:18329-18348 | MsG0080047899.01.T01:five_prime_UTR | 30.0% | |
| ATTCTGAATCTTACTCTCTT+AGG | + | contig140end:21169-21188 | MsG0080047899.01.T01:intron | 30.0% | |
| CTCCAATTTGAAAGTAATGT+TGG | - | contig140end:19870-19889 | MsG0080047899.01.T01:intergenic | 30.0% | |
| GAAGAAAAGCAAAAAAGAGA+AGG | + | contig140end:19679-19698 | MsG0080047899.01.T01:intron | 30.0% | |
| GGGAGATAAATATGAAAGAA+AGG | - | contig140end:18301-18320 | MsG0080047899.01.T01:intergenic | 30.0% | |
| GTCCAACATTACTTTCAAAT+TGG | + | contig140end:19865-19884 | MsG0080047899.01.T01:intron | 30.0% | |
| GTTAAGTTACTGTTTAGGAA+GGG | - | contig140end:18322-18341 | MsG0080047899.01.T01:intergenic | 30.0% | |
| GTTTATGGTATAATGAATGG+TGG | + | contig140end:21766-21785 | MsG0080047899.01.T01:three_prime_UTR | 30.0% | |
| TAAATGTAGATAGCTAGCTA+GGG | - | contig140end:21425-21444 | MsG0080047899.01.T01:intergenic | 30.0% | |
| TACATTAGAAATGGTGAAGA+AGG | - | contig140end:19501-19520 | MsG0080047899.01.T01:intergenic | 30.0% | |
| TGTTAAGTTACTGTTTAGGA+AGG | - | contig140end:18323-18342 | MsG0080047899.01.T01:intergenic | 30.0% | |
| TTAAGTTACTGTTTAGGAAG+GGG | - | contig140end:18321-18340 | MsG0080047899.01.T01:intergenic | 30.0% | |
| ! | AGTTTTCGGAGTTTGAATTT+TGG | + | contig140end:18949-18968 | MsG0080047899.01.T01:intron | 30.0% |
| ! | CGATGCTACTTAAGTATTAA+AGG | - | contig140end:18262-18281 | MsG0080047899.01.T01:intergenic | 30.0% |
| ! | CTTCAATCCTCAAACTTTTA+TGG | + | contig140end:18867-18886 | MsG0080047899.01.T01:CDS | 30.0% |
| ! | TTCATCATCATGTTTGTTGA+AGG | - | contig140end:19281-19300 | MsG0080047899.01.T01:intergenic | 30.0% |
| ! | TTGATGATAAACACAATGAG+AGG | + | contig140end:19323-19342 | MsG0080047899.01.T01:CDS | 30.0% |
| ! | TTTTTCACACAAGCAAATGT+AGG | + | contig140end:21584-21603 | MsG0080047899.01.T01:CDS | 30.0% |
| !! | GTCCATTTATTTTCATTCAG+TGG | + | contig140end:21315-21334 | MsG0080047899.01.T01:intron | 30.0% |
| !!! | ACAACCCTTTTTTTTGACAA+AGG | + | contig140end:20636-20655 | MsG0080047899.01.T01:intron | 30.0% |
| !!! | ACTATCTTTTGAGTTGGAAT+TGG | + | contig140end:19188-19207 | MsG0080047899.01.T01:intron | 30.0% |
| !!! | ATCAAGATGGTTTGTTTTCT+AGG | + | contig140end:21836-21855 | MsG0080047899.01.T01:three_prime_UTR | 30.0% |
| !!! | GTGTGTTTGTTTTATTGTGT+AGG | + | contig140end:21627-21646 | MsG0080047899.01.T01:three_prime_UTR | 30.0% |
| !!! | TTTTGAGTTGGAATTGGAAA+TGG | + | contig140end:19194-19213 | MsG0080047899.01.T01:intron | 30.0% |
| AAGCAAAATGTTGGAAAGCA+GGG | - | contig140end:19896-19915 | MsG0080047899.01.T01:intergenic | 35.0% | |
| AGAAACCCTATACCAAATCT+AGG | + | contig140end:19930-19949 | MsG0080047899.01.T01:intron | 35.0% | |
| ATAAGTCCGAAATGAATGTG+TGG | - | contig140end:21350-21369 | MsG0080047899.01.T01:intergenic | 35.0% | |
| ATGATAAACACAATGAGAGG+AGG | + | contig140end:19326-19345 | MsG0080047899.01.T01:CDS | 35.0% | |
| CACTTTCCACACATTCATTT+CGG | + | contig140end:21341-21360 | MsG0080047899.01.T01:CDS | 35.0% | |
| CCATAAACCAACAACTTGAA+AGG | - | contig140end:21754-21773 | MsG0080047899.01.T01:intergenic | 35.0% | |
| GAAACCCTATACCAAATCTA+GGG | + | contig140end:19931-19950 | MsG0080047899.01.T01:intron | 35.0% | |
| GAAATGAATGTGTGGAAAGT+GGG | - | contig140end:21342-21361 | MsG0080047899.01.T01:intergenic | 35.0% | |
| GAAGTGTAAAATGGACAGAA+GGG | - | contig140end:19623-19642 | MsG0080047899.01.T01:intergenic | 35.0% | |
| GCCCACTGAATGAAAATAAA+TGG | - | contig140end:21320-21339 | MsG0080047899.01.T01:intergenic | 35.0% | |
| GTAAATGTAGATAGCTAGCT+AGG | - | contig140end:21426-21445 | MsG0080047899.01.T01:intergenic | 35.0% | |
| TAAGCAAAATGTTGGAAAGC+AGG | - | contig140end:19897-19916 | MsG0080047899.01.T01:intergenic | 35.0% | |
| TGATAAACACAATGAGAGGA+GGG | + | contig140end:19327-19346 | MsG0080047899.01.T01:CDS | 35.0% | |
| TTTCATTGTGTAGGATTCAG+AGG | + | contig140end:21541-21560 | MsG0080047899.01.T01:intron | 35.0% | |
| TTTCTTGATGTACTTCAGAG+TGG | + | contig140end:19759-19778 | MsG0080047899.01.T01:intron | 35.0% | |
| ! | AGAAGTGTAAAATGGACAGA+AGG | - | contig140end:19624-19643 | MsG0080047899.01.T01:intergenic | 35.0% |
| ! | AGATTCTTTTGATGCCATCA+TGG | + | contig140end:19562-19581 | MsG0080047899.01.T01:intron | 35.0% |
| ! | GAAAGAAGAGAGTTCTGATT+AGG | + | contig140end:20389-20408 | MsG0080047899.01.T01:intron | 35.0% |
| ! | GATTCTTTTGATGCCATCAT+GGG | + | contig140end:19563-19582 | MsG0080047899.01.T01:intron | 35.0% |
| ! | GGATCACCTTTGAACATTTT+TGG | + | contig140end:20863-20882 | MsG0080047899.01.T01:intron | 35.0% |
| ! | TTAGCCCTAGATTTGGTATA+GGG | - | contig140end:19938-19957 | MsG0080047899.01.T01:intergenic | 35.0% |
| ! | TTGTTTCTTAGCCCTAGATT+TGG | - | contig140end:19945-19964 | MsG0080047899.01.T01:intergenic | 35.0% |
| !! | ACGAACATTAGCTTTCTTCA+CGG | - | contig140end:21387-21406 | MsG0080047899.01.T01:intergenic | 35.0% |
| !! | CCTTTCAAGTTGTTGGTTTA+TGG | + | contig140end:21751-21770 | MsG0080047899.01.T01:three_prime_UTR | 35.0% |
| !! | TGGATTCAGCTCTATTTTTC+CGG | - | contig140end:20289-20308 | MsG0080047899.01.T01:intergenic | 35.0% |
| !!! | GCTGAAACAGTTTTAAGAAG+AGG | - | contig140end:18976-18995 | MsG0080047899.01.T01:intergenic | 35.0% |
| AAAATGGACAGAAGGGTTTC+AGG | - | contig140end:19616-19635 | MsG0080047899.01.T01:intergenic | 40.0% | |
| AAAGGAAGTGGATGATGAAG+AGG | - | contig140end:18513-18532 | MsG0080047899.01.T01:intergenic | 40.0% | |
| ACTGATCGGTGAAGTTTCTT+GGG | - | contig140end:18402-18421 | MsG0080047899.01.T01:intergenic | 40.0% | |
| AGATCCAACGTATCAAAGCT+GGG | + | contig140end:21083-21102 | MsG0080047899.01.T01:CDS | 40.0% | |
| AGGACGTGCTTATGAAAGAT+GGG | + | contig140end:21561-21580 | MsG0080047899.01.T01:CDS | 40.0% | |
| ATAAATGTGATCAGAGGGAG+AGG | - | contig140end:19983-20002 | MsG0080047899.01.T01:intergenic | 40.0% | |
| ATCAAGAGGATCAGATCCAT+AGG | + | contig140end:18343-18362 | MsG0080047899.01.T01:five_prime_UTR | 40.0% | |
| CAGTGTCACAGAAATTGCAA+TGG | - | contig140end:18592-18611 | MsG0080047899.01.T01:intergenic | 40.0% | |
| CATGTTAACTGAGAGAAGGT+TGG | - | contig140end:18797-18816 | MsG0080047899.01.T01:intergenic | 40.0% | |
| CGAAATGAATGTGTGGAAAG+TGG | - | contig140end:21343-21362 | MsG0080047899.01.T01:intergenic | 40.0% | |
| CTCTAACAATCACTCTCCAA+TGG | - | contig140end:20309-20328 | MsG0080047899.01.T01:intergenic | 40.0% | |
| GAAGAAAGCTAATGTTCGTC+AGG | + | contig140end:21388-21407 | MsG0080047899.01.T01:CDS | 40.0% | |
| GATTGAAGTAAGTGTGTCCA+AGG | - | contig140end:18855-18874 | MsG0080047899.01.T01:intergenic | 40.0% | |
| GATTGATGGGATTGACTGAT+CGG | - | contig140end:18416-18435 | MsG0080047899.01.T01:intergenic | 40.0% | |
| GTCTTGAACAAACTTGTGCA+AGG | - | contig140end:18748-18767 | MsG0080047899.01.T01:intergenic | 40.0% | |
| TAAATGTGATCAGAGGGAGA+GGG | - | contig140end:19982-20001 | MsG0080047899.01.T01:intergenic | 40.0% | |
| TATTAGCAGGTGGAGGTTTA+GGG | - | contig140end:19367-19386 | MsG0080047899.01.T01:intergenic | 40.0% | |
| TCACTCAATGTTTGCATGCA+AGG | - | contig140end:20251-20270 | MsG0080047899.01.T01:intergenic | 40.0% | |
| TGCAATGGACATAACAAAGC+TGG | - | contig140end:18577-18596 | MsG0080047899.01.T01:intergenic | 40.0% | |
| TTCTTACGTCTATTAGCAGG+TGG | - | contig140end:19377-19396 | MsG0080047899.01.T01:intergenic | 40.0% | |
| ! | ATCATCCACTTCCTTTTCAC+CGG | + | contig140end:18517-18536 | MsG0080047899.01.T01:CDS | 40.0% |
| ! | CTTAGCCCTAGATTTGGTAT+AGG | - | contig140end:19939-19958 | MsG0080047899.01.T01:intergenic | 40.0% |
| ! | TTTTCCTACCTTTCCCATGA+TGG | - | contig140end:19579-19598 | MsG0080047899.01.T01:intergenic | 40.0% |
| ! | TTTTGATGCCATCATGGGAA+AGG | + | contig140end:19568-19587 | MsG0080047899.01.T01:intron | 40.0% |
| !! | ATTCAGCTCTATTTTTCCGG+GGG | - | contig140end:20286-20305 | MsG0080047899.01.T01:intergenic | 40.0% |
| !! | CAAGTGAGTTTTGATAGGGA+TGG | - | contig140end:19716-19735 | MsG0080047899.01.T01:intergenic | 40.0% |
| !! | CGAACATTAGCTTTCTTCAC+GGG | - | contig140end:21386-21405 | MsG0080047899.01.T01:intergenic | 40.0% |
| !! | GATTCAGCTCTATTTTTCCG+GGG | - | contig140end:20287-20306 | MsG0080047899.01.T01:intergenic | 40.0% |
| !! | GGATTCAGCTCTATTTTTCC+GGG | - | contig140end:20288-20307 | MsG0080047899.01.T01:intergenic | 40.0% |
| AAGACTGTGACAGTGAGATG+TGG | + | contig140end:18763-18782 | MsG0080047899.01.T01:CDS | 45.0% | |
| ACAGCAACAACTCTCTCCTT+CGG | + | contig140end:18550-18569 | MsG0080047899.01.T01:CDS | 45.0% | |
| ACATAACAAAGCTGGTCCGA+AGG | - | contig140end:18569-18588 | MsG0080047899.01.T01:intergenic | 45.0% | |
| ATGAAGCGGTTGTAAGCAGA+TGG | - | contig140end:20500-20519 | MsG0080047899.01.T01:intergenic | 45.0% | |
| CACGCATGTTAACTGAGAGA+AGG | - | contig140end:18801-18820 | MsG0080047899.01.T01:intergenic | 45.0% | |
| CTATTAGCAGGTGGAGGTTT+AGG | - | contig140end:19368-19387 | MsG0080047899.01.T01:intergenic | 45.0% | |
| GACTGATCGGTGAAGTTTCT+TGG | - | contig140end:18403-18422 | MsG0080047899.01.T01:intergenic | 45.0% | |
| GAGATCCAACGTATCAAAGC+TGG | + | contig140end:21082-21101 | MsG0080047899.01.T01:CDS | 45.0% | |
| GAGGACGTGCTTATGAAAGA+TGG | + | contig140end:21560-21579 | MsG0080047899.01.T01:CDS | 45.0% | |
| TCCTGATATAAGCCACAGAG+AGG | + | contig140end:21108-21127 | MsG0080047899.01.T01:CDS | 45.0% | |
| TGTCCAAGGTGAAGCTGATT+AGG | - | contig140end:18841-18860 | MsG0080047899.01.T01:intergenic | 45.0% | |
| TTACGTCTATTAGCAGGTGG+AGG | - | contig140end:19374-19393 | MsG0080047899.01.T01:intergenic | 45.0% | |
| TTTCTGTGACACTGTTCTCG+CGG | + | contig140end:18598-18617 | MsG0080047899.01.T01:CDS | 45.0% | |
| ! | AGAGTTGTTGCTGTTGTTGC+TGG | - | contig140end:18544-18563 | MsG0080047899.01.T01:intergenic | 45.0% |
| ! | GATTCCCAGCTTTGATACGT+TGG | - | contig140end:21090-21109 | MsG0080047899.01.T01:intergenic | 45.0% |
| ! | GGTATAATGAATGGTGGGAG+AGG | + | contig140end:21772-21791 | MsG0080047899.01.T01:three_prime_UTR | 45.0% |
| !! | TTCTTCACGGGTTGATGATC+AGG | - | contig140end:21374-21393 | MsG0080047899.01.T01:intergenic | 45.0% |
| !!! | AATCTATTTAATTTTTTTTT+AGG | + | contig140end:20187-20206 | MsG0080047899.01.T01:intron | 5.0% |
| AGGTGAAGCTGATTAGGAGC+AGG | - | contig140end:18835-18854 | MsG0080047899.01.T01:intergenic | 50.0% | |
| CAAACACACGCACATTGCTC+AGG | - | contig140end:20445-20464 | MsG0080047899.01.T01:intergenic | 50.0% | |
| CATTGCTCAGGCAAACAGAC+AGG | - | contig140end:20433-20452 | MsG0080047899.01.T01:intergenic | 50.0% | |
| CTGCACTAAAAGCCTCTCTG+TGG | - | contig140end:21123-21142 | MsG0080047899.01.T01:intergenic | 50.0% | |
| GAAGCTGATTAGGAGCAGGA+AGG | - | contig140end:18831-18850 | MsG0080047899.01.T01:intergenic | 50.0% | |
| GATGCCATCATGGGAAAGGT+AGG | + | contig140end:19572-19591 | MsG0080047899.01.T01:intron | 50.0% | |
| GCCTCTCTGTGGCTTATATC+AGG | - | contig140end:21112-21131 | MsG0080047899.01.T01:intergenic | 50.0% | |
| GCTCCTAATCAGCTTCACCT+TGG | + | contig140end:18835-18854 | MsG0080047899.01.T01:CDS | 50.0% | |
| GGAACTCTCTGTCTCTTCTC+CGG | - | contig140end:20479-20498 | MsG0080047899.01.T01:intergenic | 50.0% | |
| GTGAGACAGAATTCTTCCCC+CGG | + | contig140end:20267-20286 | MsG0080047899.01.T01:intron | 50.0% | |
| TGTGTTTGCTTGTCCAGCTC+CGG | + | contig140end:20457-20476 | MsG0080047899.01.T01:intron | 50.0% | |
| TTGTTGCTGGTCCGGTGAAA+AGG | - | contig140end:18531-18550 | MsG0080047899.01.T01:intergenic | 50.0% | |
| ! | TGTTGCTGTTGTTGCTGGTC+CGG | - | contig140end:18539-18558 | MsG0080047899.01.T01:intergenic | 50.0% |
| CTGGTCCGGTGAAAAGGAAG+TGG | - | contig140end:18525-18544 | MsG0080047899.01.T01:intergenic | 55.0% | |
| CTCTGTCTCTTCTCCGGAGC+TGG | - | contig140end:20473-20492 | MsG0080047899.01.T01:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| contig140end | gene | 18231 | 21855 | 18231 | ID=MsG0080047899.01;Name=MsG0080047899.01 |
| contig140end | mRNA | 18231 | 21855 | 18231 | ID=MsG0080047899.01.T01;Parent=MsG0080047899.01;Name=MsG0080047899.01.T01;_AED=0.40;_eAED=0.40;_QI=275|1|1|1|0.83|0.85|7|233|221 |
| contig140end | exon | 21554 | 21855 | 21554 | ID=MsG0080047899.01.T01:exon:7012;Parent=MsG0080047899.01.T01 |
| contig140end | exon | 21335 | 21409 | 21335 | ID=MsG0080047899.01.T01:exon:7011;Parent=MsG0080047899.01.T01 |
| contig140end | exon | 21078 | 21153 | 21078 | ID=MsG0080047899.01.T01:exon:7010;Parent=MsG0080047899.01.T01 |
| contig140end | exon | 20474 | 20522 | 20474 | ID=MsG0080047899.01.T01:exon:7009;Parent=MsG0080047899.01.T01 |
| contig140end | exon | 19260 | 19389 | 19260 | ID=MsG0080047899.01.T01:exon:7008;Parent=MsG0080047899.01.T01 |
| contig140end | exon | 18736 | 18888 | 18736 | ID=MsG0080047899.01.T01:exon:7007;Parent=MsG0080047899.01.T01 |
| contig140end | exon | 18231 | 18619 | 18231 | ID=MsG0080047899.01.T01:exon:7006;Parent=MsG0080047899.01.T01 |
| contig140end | five_prime_UTR | 18231 | 18505 | 18231 | ID=MsG0080047899.01.T01:five_prime_utr;Parent=MsG0080047899.01.T01 |
| contig140end | CDS | 18506 | 18619 | 18506 | ID=MsG0080047899.01.T01:cds;Parent=MsG0080047899.01.T01 |
| contig140end | CDS | 18736 | 18888 | 18736 | ID=MsG0080047899.01.T01:cds;Parent=MsG0080047899.01.T01 |
| contig140end | CDS | 19260 | 19389 | 19260 | ID=MsG0080047899.01.T01:cds;Parent=MsG0080047899.01.T01 |
| contig140end | CDS | 20474 | 20522 | 20474 | ID=MsG0080047899.01.T01:cds;Parent=MsG0080047899.01.T01 |
| contig140end | CDS | 21078 | 21153 | 21078 | ID=MsG0080047899.01.T01:cds;Parent=MsG0080047899.01.T01 |
| contig140end | CDS | 21335 | 21409 | 21335 | ID=MsG0080047899.01.T01:cds;Parent=MsG0080047899.01.T01 |
| contig140end | CDS | 21554 | 21622 | 21554 | ID=MsG0080047899.01.T01:cds;Parent=MsG0080047899.01.T01 |
| contig140end | three_prime_UTR | 21623 | 21855 | 21623 | ID=MsG0080047899.01.T01:three_prime_utr;Parent=MsG0080047899.01.T01 |
| Gene Sequence |
| Protein sequence |
