Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020891.01.T01 | AFK48573.1 | 76.849 | 311 | 45 | 1 | 1 | 284 | 109 | 419 | 7.33E-170 | 486 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020891.01.T01 | Q9SIB2 | 59.133 | 323 | 91 | 5 | 1 | 283 | 154 | 475 | 2.82E-134 | 391 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020891.01.T01 | I3T7T1 | 76.849 | 311 | 45 | 1 | 1 | 284 | 109 | 419 | 3.50e-170 | 486 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000784.01 | MsG0480020891.01 | 0.803804 | 2.927169e-49 | 1.484862e-46 |
| MsG0180000785.01 | MsG0480020891.01 | 0.812157 | 4.883786e-51 | 3.081787e-48 |
| MsG0180004246.01 | MsG0480020891.01 | 0.803845 | 2.870337e-49 | 1.457644e-46 |
| MsG0180004814.01 | MsG0480020891.01 | 0.807877 | 4.078094e-50 | 2.297434e-47 |
| MsG0180005807.01 | MsG0480020891.01 | 0.800087 | 1.699123e-48 | 7.841413e-46 |
| MsG0480020891.01 | MsG0480022537.01 | 0.800251 | 1.573269e-48 | 7.290818e-46 |
| MsG0480020891.01 | MsG0780038334.01 | 0.800526 | 1.382850e-48 | 6.453272e-46 |
| MsG0480020891.01 | MsG0880042749.01 | 0.801946 | 7.082882e-49 | 3.426210e-46 |
| MsG0480020891.01 | MsG0880045668.01 | 0.813790 | 2.140998e-51 | 1.411582e-48 |
| MsG0380015896.01 | MsG0480020891.01 | 0.802386 | 5.749720e-49 | 2.812937e-46 |
| MsG0280009869.01 | MsG0480020891.01 | 0.812265 | 4.625228e-51 | 2.927227e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020891.01.T01 | MTR_4g062270 | 76.849 | 311 | 45 | 1 | 1 | 284 | 154 | 464 | 1.00e-172 | 486 |
| MsG0480020891.01.T01 | MTR_4g062190 | 75.000 | 320 | 44 | 2 | 1 | 284 | 154 | 473 | 9.76e-166 | 468 |
| MsG0480020891.01.T01 | MTR_4g062170 | 75.235 | 319 | 44 | 2 | 1 | 284 | 154 | 472 | 1.06e-165 | 468 |
| MsG0480020891.01.T01 | MTR_2g096210 | 64.780 | 318 | 74 | 3 | 1 | 280 | 154 | 471 | 4.89e-147 | 421 |
| MsG0480020891.01.T01 | MTR_1g115560 | 47.771 | 314 | 120 | 2 | 1 | 270 | 155 | 468 | 3.81e-105 | 314 |
| MsG0480020891.01.T01 | MTR_7g118170 | 42.517 | 294 | 131 | 5 | 1 | 259 | 244 | 534 | 1.08e-72 | 232 |
| MsG0480020891.01.T01 | MTR_7g118160 | 40.351 | 285 | 129 | 3 | 1 | 253 | 141 | 416 | 4.58e-69 | 220 |
| MsG0480020891.01.T01 | MTR_4g070270 | 39.085 | 284 | 140 | 3 | 1 | 255 | 222 | 501 | 8.99e-66 | 214 |
| MsG0480020891.01.T01 | MTR_1g076430 | 40.000 | 285 | 133 | 4 | 1 | 253 | 225 | 503 | 1.00e-65 | 214 |
| MsG0480020891.01.T01 | MTR_5g056510 | 39.007 | 282 | 139 | 3 | 1 | 253 | 210 | 487 | 1.23e-65 | 213 |
| MsG0480020891.01.T01 | MTR_1g110930 | 37.589 | 282 | 143 | 3 | 1 | 253 | 210 | 487 | 1.30e-64 | 210 |
| MsG0480020891.01.T01 | MTR_1g041085 | 40.214 | 281 | 156 | 2 | 1 | 273 | 231 | 507 | 1.54e-63 | 208 |
| MsG0480020891.01.T01 | MTR_4g113280 | 39.427 | 279 | 157 | 2 | 1 | 271 | 202 | 476 | 2.85e-63 | 207 |
| MsG0480020891.01.T01 | MTR_2g054940 | 39.502 | 281 | 158 | 2 | 1 | 273 | 224 | 500 | 8.46e-63 | 206 |
| MsG0480020891.01.T01 | MTR_2g007020 | 39.298 | 285 | 139 | 4 | 1 | 255 | 170 | 450 | 2.71e-61 | 201 |
| MsG0480020891.01.T01 | MTR_7g081695 | 39.502 | 281 | 158 | 2 | 1 | 273 | 212 | 488 | 1.42e-60 | 205 |
| MsG0480020891.01.T01 | MTR_3g105550 | 36.552 | 290 | 145 | 4 | 1 | 253 | 246 | 533 | 1.30e-59 | 198 |
| MsG0480020891.01.T01 | MTR_6g074880 | 44.156 | 231 | 124 | 3 | 1 | 230 | 186 | 412 | 2.56e-59 | 196 |
| MsG0480020891.01.T01 | MTR_4g054415 | 37.324 | 284 | 143 | 5 | 1 | 253 | 143 | 422 | 5.22e-59 | 194 |
| MsG0480020891.01.T01 | MTR_4g054630 | 37.324 | 284 | 143 | 5 | 1 | 253 | 184 | 463 | 8.13e-59 | 194 |
| MsG0480020891.01.T01 | MTR_6g032965 | 37.456 | 283 | 143 | 4 | 1 | 253 | 103 | 381 | 1.49e-58 | 192 |
| MsG0480020891.01.T01 | MTR_2g436480 | 34.375 | 288 | 158 | 4 | 1 | 259 | 169 | 454 | 6.16e-55 | 184 |
| MsG0480020891.01.T01 | MTR_1g102290 | 40.486 | 247 | 142 | 3 | 1 | 246 | 204 | 446 | 1.57e-54 | 184 |
| MsG0480020891.01.T01 | MTR_3g072980 | 37.143 | 245 | 149 | 1 | 1 | 245 | 205 | 444 | 4.42e-51 | 175 |
| MsG0480020891.01.T01 | MTR_3g072940 | 37.143 | 245 | 149 | 1 | 1 | 245 | 205 | 444 | 4.61e-51 | 175 |
| MsG0480020891.01.T01 | MTR_6g051440 | 37.143 | 245 | 149 | 1 | 1 | 245 | 204 | 443 | 5.38e-50 | 172 |
| MsG0480020891.01.T01 | MTR_2g013740 | 38.793 | 232 | 135 | 1 | 1 | 232 | 234 | 458 | 9.83e-50 | 171 |
| MsG0480020891.01.T01 | MTR_4g054260 | 38.034 | 234 | 127 | 4 | 34 | 253 | 93 | 322 | 1.05e-48 | 164 |
| MsG0480020891.01.T01 | MTR_4g053905 | 31.847 | 157 | 73 | 4 | 127 | 253 | 4 | 156 | 8.86e-19 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020891.01.T01 | AT2G28630 | 59.133 | 323 | 91 | 5 | 1 | 283 | 154 | 475 | 2.87e-135 | 391 |
| MsG0480020891.01.T01 | AT2G28630 | 59.133 | 323 | 91 | 5 | 1 | 283 | 154 | 475 | 2.87e-135 | 391 |
| MsG0480020891.01.T01 | AT1G07720 | 60.494 | 324 | 87 | 5 | 1 | 283 | 154 | 477 | 4.56e-131 | 380 |
| MsG0480020891.01.T01 | AT1G07720 | 60.494 | 324 | 87 | 5 | 1 | 283 | 197 | 520 | 5.44e-131 | 382 |
| MsG0480020891.01.T01 | AT5G04530 | 49.329 | 298 | 123 | 2 | 1 | 270 | 158 | 455 | 3.57e-106 | 317 |
| MsG0480020891.01.T01 | AT1G01120 | 41.197 | 284 | 132 | 3 | 1 | 253 | 244 | 523 | 1.37e-71 | 229 |
| MsG0480020891.01.T01 | AT1G25450 | 40.780 | 282 | 134 | 3 | 1 | 253 | 206 | 483 | 6.95e-68 | 219 |
| MsG0480020891.01.T01 | AT1G19440 | 39.716 | 282 | 137 | 4 | 1 | 253 | 234 | 511 | 3.13e-67 | 218 |
| MsG0480020891.01.T01 | AT2G46720 | 44.355 | 248 | 130 | 3 | 1 | 246 | 182 | 423 | 1.84e-65 | 212 |
| MsG0480020891.01.T01 | AT5G43760 | 40.972 | 288 | 132 | 5 | 1 | 253 | 233 | 517 | 1.00e-64 | 211 |
| MsG0480020891.01.T01 | AT2G16280 | 37.943 | 282 | 142 | 3 | 1 | 253 | 230 | 507 | 1.66e-64 | 211 |
| MsG0480020891.01.T01 | AT1G04220 | 45.299 | 234 | 119 | 3 | 1 | 230 | 227 | 455 | 2.98e-64 | 210 |
| MsG0480020891.01.T01 | AT1G68530 | 39.576 | 283 | 136 | 4 | 1 | 253 | 211 | 488 | 4.35e-64 | 209 |
| MsG0480020891.01.T01 | AT4G34510 | 38.380 | 284 | 139 | 4 | 1 | 253 | 204 | 482 | 4.19e-63 | 206 |
| MsG0480020891.01.T01 | AT2G15090 | 38.028 | 284 | 143 | 4 | 1 | 255 | 199 | 478 | 6.11e-63 | 206 |
| MsG0480020891.01.T01 | AT4G34250 | 38.380 | 284 | 142 | 3 | 1 | 255 | 207 | 486 | 1.04e-62 | 205 |
| MsG0480020891.01.T01 | AT2G26640 | 38.790 | 281 | 160 | 2 | 1 | 273 | 222 | 498 | 1.39e-61 | 203 |
| MsG0480020891.01.T01 | AT4G34520 | 37.943 | 282 | 143 | 3 | 1 | 253 | 209 | 487 | 1.96e-61 | 202 |
| MsG0480020891.01.T01 | AT3G10280 | 42.742 | 248 | 127 | 4 | 1 | 246 | 182 | 416 | 8.41e-60 | 197 |
| MsG0480020891.01.T01 | AT1G71160 | 39.655 | 232 | 135 | 1 | 1 | 232 | 169 | 395 | 1.91e-59 | 196 |
| MsG0480020891.01.T01 | AT5G49070 | 36.749 | 283 | 146 | 5 | 1 | 253 | 173 | 452 | 2.59e-58 | 193 |
| MsG0480020891.01.T01 | AT2G26250 | 34.098 | 305 | 149 | 4 | 1 | 253 | 243 | 547 | 1.48e-55 | 188 |
| MsG0480020891.01.T01 | AT3G52160 | 32.114 | 246 | 132 | 2 | 1 | 246 | 97 | 307 | 4.79e-40 | 142 |
| MsG0480020891.01.T01 | AT3G52160 | 32.114 | 246 | 132 | 2 | 1 | 246 | 210 | 420 | 2.07e-39 | 143 |
| MsG0480020891.01.T01 | AT1G68530 | 39.759 | 166 | 100 | 0 | 1 | 166 | 211 | 376 | 4.49e-37 | 135 |
| MsG0480020891.01.T01 | AT5G49070 | 35.714 | 140 | 90 | 0 | 1 | 140 | 173 | 312 | 1.64e-25 | 103 |
Find 53 sgRNAs with CRISPR-Local
Find 70 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCTTTGGTTGACAATTTA+AGG | 0.100488 | 4:-50201954 | MsG0480020891.01.T01:CDS |
| TTCCCTTGTTGGCAAAATTT+TGG | 0.124859 | 4:+50201921 | None:intergenic |
| AAGAAATAAGTTAGCACTTT+TGG | 0.212195 | 4:-50202244 | MsG0480020891.01.T01:CDS |
| TCAAATGCAATAGTTGCTTA+TGG | 0.231406 | 4:-50201544 | MsG0480020891.01.T01:intron |
| TCGTTGCCATTATACCAATT+TGG | 0.292442 | 4:+50202201 | None:intergenic |
| CAGAGTCACTTGGTCCAAAT+TGG | 0.294730 | 4:-50202215 | MsG0480020891.01.T01:CDS |
| TGATTATCCACCAGAGTCTT+TGG | 0.294899 | 4:-50201471 | MsG0480020891.01.T01:CDS |
| GGTAGTTTGTGGTATGTGTT+AGG | 0.297902 | 4:-50201673 | MsG0480020891.01.T01:CDS |
| AAAGCTCTTGTTGCTACTTT+TGG | 0.299116 | 4:+50201970 | None:intergenic |
| AACCTAAGCAATTCCCTTGT+TGG | 0.324150 | 4:+50201910 | None:intergenic |
| GTCTTTGGCCAATCCTTTCA+TGG | 0.341962 | 4:-50201456 | MsG0480020891.01.T01:CDS |
| CTTGGTCCAAATTGGTATAA+TGG | 0.350367 | 4:-50202207 | MsG0480020891.01.T01:CDS |
| CCTGCTCATCTTCCTTCTTA+AGG | 0.356784 | 4:+50202025 | None:intergenic |
| CGATGTAGTGTCATCCTTGC+TGG | 0.365030 | 4:+50201715 | None:intergenic |
| CAAATGCAATAGTTGCTTAT+GGG | 0.367150 | 4:-50201543 | MsG0480020891.01.T01:intron |
| TCACCATTGAATTTCAAAAC+TGG | 0.369777 | 4:-50201826 | MsG0480020891.01.T01:CDS |
| CAGTATACTAATGTTCTTTG+AGG | 0.375950 | 4:+50202107 | None:intergenic |
| AAAGTAGTGATTGATGGAAT+TGG | 0.378187 | 4:-50201772 | MsG0480020891.01.T01:CDS |
| AGGATGACACTACATCGTTT+TGG | 0.413530 | 4:-50201709 | MsG0480020891.01.T01:CDS |
| ACACTTCTGCTGGTAGTTTG+TGG | 0.425912 | 4:-50201684 | MsG0480020891.01.T01:CDS |
| AAAAGTAGCAACAAGAGCTT+TGG | 0.425954 | 4:-50201968 | MsG0480020891.01.T01:CDS |
| AGCTTTGGTTGACAATTTAA+GGG | 0.427201 | 4:-50201953 | MsG0480020891.01.T01:CDS |
| TGCCAACAAGGGAATTGCTT+AGG | 0.432387 | 4:-50201912 | MsG0480020891.01.T01:CDS |
| TGTTGAAGATGCAAATGTTT+GGG | 0.442098 | 4:-50201507 | MsG0480020891.01.T01:CDS |
| GTATAATTGTTGCCTTAAGA+AGG | 0.457851 | 4:-50202037 | MsG0480020891.01.T01:CDS |
| GGAGGGAAAGTAGTGATTGA+TGG | 0.464389 | 4:-50201778 | MsG0480020891.01.T01:CDS |
| GCCGGTACGGAAAAGACAAT+TGG | 0.468555 | 4:+50202161 | None:intergenic |
| CTTTCATGGAGAAGTATAGT+TGG | 0.475852 | 4:-50201442 | MsG0480020891.01.T01:CDS |
| TGAAATTGAAGTGCTTAGTA+AGG | 0.476191 | 4:-50202086 | MsG0480020891.01.T01:CDS |
| TCTCGAATTTCACAACTGTA+TGG | 0.478922 | 4:+50201401 | None:intergenic |
| GAAGGAAGATGAGCAGGGTA+GGG | 0.479101 | 4:-50202019 | MsG0480020891.01.T01:CDS |
| GAAGATGAGCAGGGTAGGGT+TGG | 0.481774 | 4:-50202015 | MsG0480020891.01.T01:CDS |
| ACAATTATACGAGTCATCTC+TGG | 0.483305 | 4:+50202050 | None:intergenic |
| CCTTAAGAAGGAAGATGAGC+AGG | 0.483405 | 4:-50202025 | MsG0480020891.01.T01:CDS |
| ATGTTGAAGATGCAAATGTT+TGG | 0.488174 | 4:-50201508 | MsG0480020891.01.T01:CDS |
| AAAGGATTGGCCAAAGACTC+TGG | 0.499677 | 4:+50201461 | None:intergenic |
| AGAAGGAAGATGAGCAGGGT+AGG | 0.509458 | 4:-50202020 | MsG0480020891.01.T01:CDS |
| GAACAGCGCAACCGCCGGTA+CGG | 0.514334 | 4:+50202148 | None:intergenic |
| ATAAAAGTGTACAATCTCAC+TGG | 0.521393 | 4:-50202327 | MsG0480020891.01.T01:CDS |
| CAACTATACTTCTCCATGAA+AGG | 0.522475 | 4:+50201443 | None:intergenic |
| GTAGTTTGTGGTATGTGTTA+GGG | 0.539189 | 4:-50201672 | MsG0480020891.01.T01:intron |
| ATACTTCTCCATGAAAGGAT+TGG | 0.540822 | 4:+50201448 | None:intergenic |
| AGTGTACAATCTCACTGGAA+TGG | 0.546407 | 4:-50202322 | MsG0480020891.01.T01:CDS |
| TTGGTTACTTCAGAGTCACT+TGG | 0.561836 | 4:-50202225 | MsG0480020891.01.T01:CDS |
| AAGAAACTTAAGATAGCTCG+TGG | 0.562388 | 4:-50201868 | MsG0480020891.01.T01:CDS |
| AATATGATCTTGAGCCAGCA+AGG | 0.598452 | 4:-50201729 | MsG0480020891.01.T01:CDS |
| CAAAAGAACAGCGCAACCGC+CGG | 0.602964 | 4:+50202143 | None:intergenic |
| TACGGAAAAGACAATTGGCT+AGG | 0.635286 | 4:+50202166 | None:intergenic |
| CTTAAGAAGGAAGATGAGCA+GGG | 0.653364 | 4:-50202024 | MsG0480020891.01.T01:CDS |
| TGCTTAGTAAGGACTCATCA+CGG | 0.654939 | 4:-50202075 | MsG0480020891.01.T01:CDS |
| TCACTACTTTCCCTCCTGTG+TGG | 0.655493 | 4:+50201785 | None:intergenic |
| GGATTGGCCAAAGACTCTGG+TGG | 0.693807 | 4:+50201464 | None:intergenic |
| AAACTTAAGATAGCTCGTGG+AGG | 0.718504 | 4:-50201865 | MsG0480020891.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAGACAAAGAAAAAG+AGG | - | Chr4:50202114-50202133 | MsG0480020891.01.T01:CDS | 20.0% |
| !! | AAGAAATAAGTTAGCACTTT+TGG | - | Chr4:50201483-50201502 | MsG0480020891.01.T01:CDS | 25.0% |
| !! | AGAGTTTTTATGATAAGCTT+TGG | - | Chr4:50202152-50202171 | MsG0480020891.01.T01:CDS | 25.0% |
| AAAGTAGTGATTGATGGAAT+TGG | - | Chr4:50201955-50201974 | MsG0480020891.01.T01:CDS | 30.0% | |
| AAGAAAAAGAGGCTCAAAAA+AGG | - | Chr4:50202125-50202144 | MsG0480020891.01.T01:CDS | 30.0% | |
| ATGTTGAAGATGCAAATGTT+TGG | - | Chr4:50202219-50202238 | MsG0480020891.01.T01:CDS | 30.0% | |
| CAAATGCAATAGTTGCTTAT+GGG | - | Chr4:50202184-50202203 | MsG0480020891.01.T01:CDS | 30.0% | |
| CAGTATACTAATGTTCTTTG+AGG | + | Chr4:50201623-50201642 | None:intergenic | 30.0% | |
| GTATAATTGTTGCCTTAAGA+AGG | - | Chr4:50201690-50201709 | MsG0480020891.01.T01:CDS | 30.0% | |
| TCAAATGCAATAGTTGCTTA+TGG | - | Chr4:50202183-50202202 | MsG0480020891.01.T01:CDS | 30.0% | |
| TCACCATTGAATTTCAAAAC+TGG | - | Chr4:50201901-50201920 | MsG0480020891.01.T01:CDS | 30.0% | |
| TGTTGAAGATGCAAATGTTT+GGG | - | Chr4:50202220-50202239 | MsG0480020891.01.T01:CDS | 30.0% | |
| ! | AGCTTTGGTTGACAATTTAA+GGG | - | Chr4:50201774-50201793 | MsG0480020891.01.T01:CDS | 30.0% |
| ! | ATAAAAGTGTACAATCTCAC+TGG | - | Chr4:50201400-50201419 | MsG0480020891.01.T01:CDS | 30.0% |
| ! | TGAAATTGAAGTGCTTAGTA+AGG | - | Chr4:50201641-50201660 | MsG0480020891.01.T01:intron | 30.0% |
| !!! | ACTCCAGTTTTGAAATTCAA+TGG | + | Chr4:50201907-50201926 | None:intergenic | 30.0% |
| !!! | TGCTACTTTTGGTAGATTTT+TGG | + | Chr4:50201749-50201768 | None:intergenic | 30.0% |
| AAAAGTAGCAACAAGAGCTT+TGG | - | Chr4:50201759-50201778 | MsG0480020891.01.T01:CDS | 35.0% | |
| AAGAAACTTAAGATAGCTCG+TGG | - | Chr4:50201859-50201878 | MsG0480020891.01.T01:CDS | 35.0% | |
| ACAATTATACGAGTCATCTC+TGG | + | Chr4:50201680-50201699 | None:intergenic | 35.0% | |
| ATACTTCTCCATGAAAGGAT+TGG | + | Chr4:50202282-50202301 | None:intergenic | 35.0% | |
| CAACTATACTTCTCCATGAA+AGG | + | Chr4:50202287-50202306 | None:intergenic | 35.0% | |
| CTTGGTCCAAATTGGTATAA+TGG | - | Chr4:50201520-50201539 | MsG0480020891.01.T01:CDS | 35.0% | |
| TCGTTGCCATTATACCAATT+TGG | + | Chr4:50201529-50201548 | None:intergenic | 35.0% | |
| TCTCGAATTTCACAACTGTA+TGG | + | Chr4:50202329-50202348 | None:intergenic | 35.0% | |
| ! | CTTTCATGGAGAAGTATAGT+TGG | - | Chr4:50202285-50202304 | MsG0480020891.01.T01:CDS | 35.0% |
| ! | GAGCTTTGGTTGACAATTTA+AGG | - | Chr4:50201773-50201792 | MsG0480020891.01.T01:CDS | 35.0% |
| ! | GTAGTTTGTGGTATGTGTTA+GGG | - | Chr4:50202055-50202074 | MsG0480020891.01.T01:CDS | 35.0% |
| ! | TCCCAAAATTTTGCCAACAA+GGG | - | Chr4:50201804-50201823 | MsG0480020891.01.T01:CDS | 35.0% |
| ! | TCCCTTGTTGGCAAAATTTT+GGG | + | Chr4:50201808-50201827 | None:intergenic | 35.0% |
| ! | TTCCCTTGTTGGCAAAATTT+TGG | + | Chr4:50201809-50201828 | None:intergenic | 35.0% |
| ! | TTTATGATAAGCTTTGGTGC+TGG | - | Chr4:50202158-50202177 | MsG0480020891.01.T01:CDS | 35.0% |
| !!! | AAAGCTCTTGTTGCTACTTT+TGG | + | Chr4:50201760-50201779 | None:intergenic | 35.0% |
| AAACTTAAGATAGCTCGTGG+AGG | - | Chr4:50201862-50201881 | MsG0480020891.01.T01:CDS | 40.0% | |
| AACCTAAGCAATTCCCTTGT+TGG | + | Chr4:50201820-50201839 | None:intergenic | 40.0% | |
| AATATGATCTTGAGCCAGCA+AGG | - | Chr4:50201998-50202017 | MsG0480020891.01.T01:CDS | 40.0% | |
| AGTGTACAATCTCACTGGAA+TGG | - | Chr4:50201405-50201424 | MsG0480020891.01.T01:CDS | 40.0% | |
| CTTAAGAAGGAAGATGAGCA+GGG | - | Chr4:50201703-50201722 | MsG0480020891.01.T01:CDS | 40.0% | |
| GGTACATGGAAGCAAAAAAG+AGG | - | Chr4:50202076-50202095 | MsG0480020891.01.T01:CDS | 40.0% | |
| TACGGAAAAGACAATTGGCT+AGG | + | Chr4:50201564-50201583 | None:intergenic | 40.0% | |
| TGATTATCCACCAGAGTCTT+TGG | - | Chr4:50202256-50202275 | MsG0480020891.01.T01:CDS | 40.0% | |
| TGCTTAGTAAGGACTCATCA+CGG | - | Chr4:50201652-50201671 | MsG0480020891.01.T01:intron | 40.0% | |
| TTGGTTACTTCAGAGTCACT+TGG | - | Chr4:50201502-50201521 | MsG0480020891.01.T01:CDS | 40.0% | |
| ! | AGGATGACACTACATCGTTT+TGG | - | Chr4:50202018-50202037 | MsG0480020891.01.T01:CDS | 40.0% |
| ! | ATTTTTGTCTCCACACAGGA+GGG | - | Chr4:50201932-50201951 | MsG0480020891.01.T01:CDS | 40.0% |
| ! | CTCCCAAAATTTTGCCAACA+AGG | - | Chr4:50201803-50201822 | MsG0480020891.01.T01:CDS | 40.0% |
| ! | GGTAGTTTGTGGTATGTGTT+AGG | - | Chr4:50202054-50202073 | MsG0480020891.01.T01:CDS | 40.0% |
| !! | GATCATTTTTGTCTCCACAC+AGG | - | Chr4:50201928-50201947 | MsG0480020891.01.T01:CDS | 40.0% |
| ACACTTCTGCTGGTAGTTTG+TGG | - | Chr4:50202043-50202062 | MsG0480020891.01.T01:CDS | 45.0% | |
| CAGAGTCACTTGGTCCAAAT+TGG | - | Chr4:50201512-50201531 | MsG0480020891.01.T01:CDS | 45.0% | |
| CCTGCTCATCTTCCTTCTTA+AGG | + | Chr4:50201705-50201724 | None:intergenic | 45.0% | |
| CCTTAAGAAGGAAGATGAGC+AGG | - | Chr4:50201702-50201721 | MsG0480020891.01.T01:CDS | 45.0% | |
| GGAGGGAAAGTAGTGATTGA+TGG | - | Chr4:50201949-50201968 | MsG0480020891.01.T01:CDS | 45.0% | |
| GTCTTTGGCCAATCCTTTCA+TGG | - | Chr4:50202271-50202290 | MsG0480020891.01.T01:CDS | 45.0% | |
| GTGGTATGTGTTAGGGTACA+TGG | - | Chr4:50202062-50202081 | MsG0480020891.01.T01:CDS | 45.0% | |
| TGCCAACAAGGGAATTGCTT+AGG | - | Chr4:50201815-50201834 | MsG0480020891.01.T01:CDS | 45.0% | |
| ! | AATTGTCTTTTCCGTACCGG+CGG | - | Chr4:50201568-50201587 | MsG0480020891.01.T01:intron | 45.0% |
| ! | CATTTTTGTCTCCACACAGG+AGG | - | Chr4:50201931-50201950 | MsG0480020891.01.T01:CDS | 45.0% |
| ! | GCCAATTGTCTTTTCCGTAC+CGG | - | Chr4:50201565-50201584 | MsG0480020891.01.T01:intron | 45.0% |
| !! | AAAGGATTGGCCAAAGACTC+TGG | + | Chr4:50202269-50202288 | None:intergenic | 45.0% |
| AGAAGGAAGATGAGCAGGGT+AGG | - | Chr4:50201707-50201726 | MsG0480020891.01.T01:CDS | 50.0% | |
| CGATGTAGTGTCATCCTTGC+TGG | + | Chr4:50202015-50202034 | None:intergenic | 50.0% | |
| GAAGGAAGATGAGCAGGGTA+GGG | - | Chr4:50201708-50201727 | MsG0480020891.01.T01:CDS | 50.0% | |
| GCCGGTACGGAAAAGACAAT+TGG | + | Chr4:50201569-50201588 | None:intergenic | 50.0% | |
| TCACTACTTTCCCTCCTGTG+TGG | + | Chr4:50201945-50201964 | None:intergenic | 50.0% | |
| !! | CGTTTTGGCAACACTTCTGC+TGG | - | Chr4:50202033-50202052 | MsG0480020891.01.T01:CDS | 50.0% |
| CAAAAGAACAGCGCAACCGC+CGG | + | Chr4:50201587-50201606 | None:intergenic | 55.0% | |
| GAAGATGAGCAGGGTAGGGT+TGG | - | Chr4:50201712-50201731 | MsG0480020891.01.T01:CDS | 55.0% | |
| !! | GGATTGGCCAAAGACTCTGG+TGG | + | Chr4:50202266-50202285 | None:intergenic | 55.0% |
| GAACAGCGCAACCGCCGGTA+CGG | + | Chr4:50201582-50201601 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 50201388 | 50202361 | 50201388 | ID=MsG0480020891.01;Name=MsG0480020891.01 |
| Chr4 | mRNA | 50201388 | 50202361 | 50201388 | ID=MsG0480020891.01.T01;Parent=MsG0480020891.01;Name=MsG0480020891.01.T01;_AED=0.49;_eAED=0.50;_QI=0|0|0|1|1|1|2|0|284 |
| Chr4 | exon | 50201673 | 50202361 | 50201673 | ID=MsG0480020891.01.T01:exon:286;Parent=MsG0480020891.01.T01 |
| Chr4 | exon | 50201388 | 50201553 | 50201388 | ID=MsG0480020891.01.T01:exon:285;Parent=MsG0480020891.01.T01 |
| Chr4 | CDS | 50201673 | 50202361 | 50201673 | ID=MsG0480020891.01.T01:cds;Parent=MsG0480020891.01.T01 |
| Chr4 | CDS | 50201388 | 50201553 | 50201388 | ID=MsG0480020891.01.T01:cds;Parent=MsG0480020891.01.T01 |
| Gene Sequence |
| Protein sequence |
