AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021137.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021137.01.T01 MTR_4g067060 73.902 387 13 5 12 392 1 305 0.0 536
MsG0480021137.01.T01 MTR_4g067060 88.889 90 10 0 448 537 292 381 1.39e-46 167
MsG0480021137.01.T01 MTR_2g098660 52.333 300 70 4 219 518 85 311 9.61e-94 289
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021137.01.T01 AT2G31450 73.837 172 45 0 221 392 134 305 6.50e-90 281
MsG0480021137.01.T01 AT2G31450 66.197 71 24 0 448 518 292 362 6.09e-24 103
MsG0480021137.01.T01 AT2G31450 73.837 172 45 0 221 392 132 303 8.08e-90 281
MsG0480021137.01.T01 AT2G31450 66.197 71 24 0 448 518 290 360 6.34e-24 103
MsG0480021137.01.T01 AT1G05900 71.345 171 49 0 221 391 141 311 7.99e-88 273
MsG0480021137.01.T01 AT1G05900 70.930 172 50 0 221 392 141 312 1.90e-86 272
MsG0480021137.01.T01 AT1G05900 66.197 71 24 0 448 518 299 369 2.05e-22 99.8

Find 113 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTCTCCTTGGTTTGTTT+TGG 0.081794 4:-54190163 MsG0480021137.01.T01:CDS
CATACCAATAGAGGATTAAT+TGG 0.189975 4:+54185431 None:intergenic
GACTTTGTGGATTTGGAAAC+TGG 0.206555 4:+54185091 None:intergenic
GCTAGGTTGGGTGTCAAAAT+TGG 0.206599 4:-54186896 MsG0480021137.01.T01:CDS
TATGCAAAGTCTTCAATTTC+AGG 0.246614 4:+54189644 None:intergenic
ATTGAAGACTTTGCATATAA+AGG 0.268285 4:-54189638 MsG0480021137.01.T01:CDS
CCTTCCGGACTTTGTGGATT+TGG 0.277302 4:+54185084 None:intergenic
GAATATCAACAGGTTGGATT+TGG 0.284709 4:-54185208 MsG0480021137.01.T01:intron
TTCTCCACTTAATGAGTTAC+TGG 0.287172 4:+54186340 None:intergenic
TAAATGTTTATGTCCTCTTT+TGG 0.308495 4:-54188914 MsG0480021137.01.T01:CDS
TCAGCGCTTCTTGTTCCTTC+CGG 0.324594 4:+54185069 None:intergenic
TGCTTTAAGAATTGTTAATC+AGG 0.337252 4:-54188881 MsG0480021137.01.T01:CDS
GTCAAAATTGGGCACAAAAC+AGG 0.350383 4:-54186884 MsG0480021137.01.T01:intron
GGAAGGTGAAGCGCCGGATG+TGG 0.358702 4:+54190062 None:intergenic
AGAATCAGTTACAGCCTTAC+AGG 0.361942 4:-54186321 MsG0480021137.01.T01:CDS
GATTAATATGATCCTTGGTT+TGG 0.363864 4:+54187898 None:intergenic
CATACCAAATGAGCCATCTT+AGG 0.370148 4:+54187070 None:intergenic
TCTCCACAGCGAGGTCTTAG+AGG 0.372827 4:+54185169 None:intergenic
ACCATGATTAATATGATCCT+TGG 0.386554 4:+54187893 None:intergenic
ATTCGCAAAATGAGGTGTTC+TGG 0.390605 4:-54188383 MsG0480021137.01.T01:CDS
AGTGACACTCTTGTCTCTTC+AGG 0.393822 4:+54185485 None:intergenic
TTGGATCCCATTCTTCCCTT+GGG 0.399695 4:+54185450 None:intergenic
CTAGGTTGGGTGTCAAAATT+GGG 0.402384 4:-54186895 MsG0480021137.01.T01:CDS
GGATCCAATTAATCCTCTAT+TGG 0.402662 4:-54185435 MsG0480021137.01.T01:intron
TGTGATAGTGGTGATTCCTT+TGG 0.409819 4:+54190002 None:intergenic
AGGTCCTAAGATGGCTCATT+TGG 0.410810 4:-54187074 MsG0480021137.01.T01:intron
TCAGCATTGTTAATTGCATC+AGG 0.415747 4:+54187444 None:intergenic
CTTCGGACGTAGACATGAAC+TGG 0.419195 4:+54190036 None:intergenic
ATTGGATCCCATTCTTCCCT+TGG 0.420321 4:+54185449 None:intergenic
GAATTGTTAATCAGGAAACT+TGG 0.420427 4:-54188873 MsG0480021137.01.T01:CDS
GAAGGTGAAGCGCCGGATGT+GGG 0.423251 4:+54190063 None:intergenic
CTTGTTCCTTCCGGACTTTG+TGG 0.423294 4:+54185078 None:intergenic
TGGTCCTTCCCTCTTCTCCT+TGG 0.423932 4:-54190173 MsG0480021137.01.T01:CDS
CTTGTGTCCATCCGCGTTCA+AGG 0.425669 4:-54185131 MsG0480021137.01.T01:CDS
ACTTTATGAGTCTGTGTTGA+AGG 0.425998 4:+54189955 None:intergenic
AGTCACTGCCAATGTGCAAC+TGG 0.440124 4:+54186388 None:intergenic
GTCGGAGTCGGAGGGTTTGA+TGG 0.443482 4:+54190086 None:intergenic
AGATGCACCAGTAGACACTA+TGG 0.445468 4:-54188360 MsG0480021137.01.T01:CDS
GCATTTGCAATCGGCTAGGT+TGG 0.447535 4:-54186909 MsG0480021137.01.T01:CDS
CATTTGCAATCGGCTAGGTT+GGG 0.448661 4:-54186908 MsG0480021137.01.T01:CDS
GAGCAACTACTACAACTTCC+AGG 0.449603 4:-54187100 MsG0480021137.01.T01:CDS
CACTGCAATTGTGGCTCCCA+AGG 0.451750 4:-54185466 MsG0480021137.01.T01:CDS
TGTGGCTCCCAAGGGAAGAA+TGG 0.454434 4:-54185457 MsG0480021137.01.T01:CDS
TTATAGATGCATTCTGTGAC+TGG 0.454986 4:-54186418 MsG0480021137.01.T01:CDS
TCCGACTCCGACCCCACATC+CGG 0.458673 4:-54190075 MsG0480021137.01.T01:CDS
TGAGTTTACCATACCAATAG+AGG 0.473658 4:+54185422 None:intergenic
TATGCCAGTAACTCATTAAG+TGG 0.473905 4:-54186344 MsG0480021137.01.T01:CDS
GGATGTGGGGTCGGAGTCGG+AGG 0.478433 4:+54190077 None:intergenic
GCCGGATGTGGGGTCGGAGT+CGG 0.478888 4:+54190074 None:intergenic
AGCGTCTCTTCCCAGTGTGC+AGG 0.481022 4:+54188413 None:intergenic
AATATTTGTCTCATGAAATA+CGG 0.485275 4:-54187145 MsG0480021137.01.T01:CDS
CAAAACAAACCAAGGAGAAG+AGG 0.486314 4:+54190164 None:intergenic
GTGGCTCCCAAGGGAAGAAT+GGG 0.487229 4:-54185456 MsG0480021137.01.T01:CDS
ACCAAGGATCATATTAATCA+TGG 0.490531 4:-54187894 MsG0480021137.01.T01:intron
TCACATCCCATAGTGTCTAC+TGG 0.493360 4:+54188353 None:intergenic
GACGTAGACATGAACTGGTT+GGG 0.499633 4:+54190041 None:intergenic
GGGTGAGGAAGTGTCTCATA+TGG 0.505048 4:+54188968 None:intergenic
GGAAAGAAGATTTGCTGTCC+TGG 0.508321 4:-54187940 MsG0480021137.01.T01:CDS
GCGGCCTCCTTGAACGCGGA+TGG 0.509047 4:+54185124 None:intergenic
GCATTATATAATACCAAAAG+AGG 0.513185 4:+54188901 None:intergenic
GGACGTAGACATGAACTGGT+TGG 0.514912 4:+54190040 None:intergenic
CAAGAGTGTCACTGCAATTG+TGG 0.515306 4:-54185475 MsG0480021137.01.T01:CDS
GTTTCCAAATCCACAAAGTC+CGG 0.517121 4:-54185088 MsG0480021137.01.T01:CDS
ATGTCCACCGCATTTGCAAT+CGG 0.518874 4:-54186918 MsG0480021137.01.T01:CDS
CACTGGGAAGAGACGCTTGA+GGG 0.519670 4:-54188407 MsG0480021137.01.T01:CDS
GAAGCAACTTCACTTTCAGT+TGG 0.520286 4:+54189403 None:intergenic
ATAGCTTAACACCACCTGTA+AGG 0.523289 4:+54186307 None:intergenic
AAGGTGAAGCGCCGGATGTG+GGG 0.526069 4:+54190064 None:intergenic
AGTTAAATCACCTGCACACT+GGG 0.535734 4:-54188423 MsG0480021137.01.T01:CDS
AAAACAAACCAAGGAGAAGA+GGG 0.540608 4:+54190165 None:intergenic
AATTGTTAATCAGGAAACTT+GGG 0.540654 4:-54188872 MsG0480021137.01.T01:intron
TCCGCGTTCAAGGAGGCCGC+AGG 0.542042 4:-54185121 MsG0480021137.01.T01:CDS
GCACATTGGCAGTGACTGAC+TGG 0.545952 4:-54186382 MsG0480021137.01.T01:CDS
TGGTTCTACACTACCTCCTA+AGG 0.547039 4:-54188324 MsG0480021137.01.T01:intron
TGCCAATGTGCAACTGGCAG+TGG 0.549460 4:+54186394 None:intergenic
TCCAGGCATAGGTCCTAAGA+TGG 0.552749 4:-54187083 MsG0480021137.01.T01:CDS
ATACAGAGTCACACCTTAGG+AGG 0.553764 4:+54188311 None:intergenic
GTCGGAGGGTTTGATGGAAG+CGG 0.554466 4:+54190092 None:intergenic
GCCATCTTAGGACCTATGCC+TGG 0.556487 4:+54187082 None:intergenic
TAGTTAAATCACCTGCACAC+TGG 0.558079 4:-54188424 MsG0480021137.01.T01:CDS
TGAGATTACATCTTACAAAG+TGG 0.560161 4:-54186451 MsG0480021137.01.T01:CDS
GATGTATTTGTATGGAAGCA+TGG 0.568771 4:+54190212 None:intergenic
TGAAGCGCCGGATGTGGGGT+CGG 0.571342 4:+54190068 None:intergenic
CACCGCATTTGCAATCGGCT+AGG 0.572246 4:-54186913 MsG0480021137.01.T01:CDS
ACTTTGTGGATTTGGAAACT+GGG 0.573037 4:+54185092 None:intergenic
AACCTAGCCGATTGCAAATG+CGG 0.576793 4:+54186911 None:intergenic
AATAGGTTATGAATGTTGCA+TGG 0.580611 4:-54186972 MsG0480021137.01.T01:intron
GTTGCATGGAACGATGTCCA+AGG 0.580882 4:-54186958 MsG0480021137.01.T01:CDS
TTGAGGGTATTCGCAAAATG+AGG 0.585116 4:-54188391 MsG0480021137.01.T01:CDS
TTGATAAAAGAGAAGATACC+AGG 0.586566 4:+54187922 None:intergenic
GAGTATCTACACATATCCCT+TGG 0.595774 4:+54186941 None:intergenic
CTACTACAACTTCCAGGCAT+AGG 0.599409 4:-54187094 MsG0480021137.01.T01:CDS
GATGTGGGGTCGGAGTCGGA+GGG 0.601933 4:+54190078 None:intergenic
GGAAACTGGGCTTGAACCTG+CGG 0.602632 4:+54185105 None:intergenic
ACCTGCGGCCTCCTTGAACG+CGG 0.611227 4:+54185120 None:intergenic
TGGTTGGGAAGGTGAAGCGC+CGG 0.614544 4:+54190056 None:intergenic
CAAACCAAGGAGAAGAGGGA+AGG 0.616694 4:+54190169 None:intergenic
ACTGCAATTGTGGCTCCCAA+GGG 0.627003 4:-54185465 MsG0480021137.01.T01:CDS
CCAAATCCACAAAGTCCGGA+AGG 0.634596 4:-54185084 MsG0480021137.01.T01:CDS
TGATGCAATTAACAATGCTG+AGG 0.635618 4:-54187442 MsG0480021137.01.T01:CDS
ACTATGGGATGTGAGAAAGC+TGG 0.636572 4:-54188344 MsG0480021137.01.T01:CDS
TAGACATGAACTGGTTGGGA+AGG 0.640593 4:+54190045 None:intergenic
GATGCACCAGTAGACACTAT+GGG 0.640638 4:-54188359 MsG0480021137.01.T01:CDS
CAACTTCCCAAAACAAACCA+AGG 0.641374 4:+54190156 None:intergenic
GTCCACTGCCAGTTGCACAT+TGG 0.643868 4:-54186396 MsG0480021137.01.T01:CDS
TTGCATGGAACGATGTCCAA+GGG 0.646833 4:-54186957 MsG0480021137.01.T01:CDS
ATTTGTCTCATGAAATACGG+TGG 0.663217 4:-54187142 MsG0480021137.01.T01:CDS
CTAGCCGATTGCAAATGCGG+TGG 0.679611 4:+54186914 None:intergenic
ATCAGTTACAGCCTTACAGG+TGG 0.692371 4:-54186318 MsG0480021137.01.T01:intron
GTGTCCATCCGCGTTCAAGG+AGG 0.696887 4:-54185128 MsG0480021137.01.T01:CDS
ACACTGGGAAGAGACGCTTG+AGG 0.716564 4:-54188408 MsG0480021137.01.T01:CDS
ACGCCTCTAAGACCTCGCTG+TGG 0.743629 4:-54185172 MsG0480021137.01.T01:CDS
ATACTACATTCTCCACAGCG+AGG 0.775449 4:+54185160 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACGTATTTTAATTTAATAAA+TGG + Chr4:54186493-54186512 None:intergenic 10.0%
!! TATATACTAAAAACTTTAGA+AGG + Chr4:54187423-54187442 None:intergenic 15.0%
!! TGGATAATAATTTAAGAAAA+TGG + Chr4:54189638-54189657 None:intergenic 15.0%
!!! AAATGTGTTTTTATGAATAT+AGG - Chr4:54187775-54187794 MsG0480021137.01.T01:intron 15.0%
!!! AATGTGTTTTTATGAATATA+GGG - Chr4:54187776-54187795 MsG0480021137.01.T01:intron 15.0%
!!! ACATAATCAAATTCTAAAAA+AGG - Chr4:54186524-54186543 MsG0480021137.01.T01:intron 15.0%
!!! ATTGATTCTTTATTTTTAAC+GGG - Chr4:54185363-54185382 MsG0480021137.01.T01:intron 15.0%
!!! CATAATCAAATTCTAAAAAA+GGG - Chr4:54186525-54186544 MsG0480021137.01.T01:intron 15.0%
!!! CATTGATTCTTTATTTTTAA+CGG - Chr4:54185362-54185381 MsG0480021137.01.T01:intron 15.0%
!!! TAATACTTTTAAAAGAAACA+GGG + Chr4:54187899-54187918 None:intergenic 15.0%
!!! TTAATTTGATATTTCAGTTT+GGG - Chr4:54187001-54187020 MsG0480021137.01.T01:intron 15.0%
!!! TTCTTTTAAAAGTATTACAT+TGG - Chr4:54187902-54187921 MsG0480021137.01.T01:CDS 15.0%
!! AATAATTAATGTTGTAAAGC+AGG - Chr4:54186431-54186450 MsG0480021137.01.T01:CDS 20.0%
!! AATATTTGTCTCATGAAATA+CGG - Chr4:54188134-54188153 MsG0480021137.01.T01:intron 20.0%
!! ATATAGTAAATAGTTGCAAA+TGG - Chr4:54185930-54185949 MsG0480021137.01.T01:intron 20.0%
!! ATGAAAAATACCTAAAACAA+TGG + Chr4:54186346-54186365 None:intergenic 20.0%
!! ATTTAGTGTTAAGTTAAGAA+AGG - Chr4:54187939-54187958 MsG0480021137.01.T01:CDS 20.0%
!! CAGATAGTTAAAACTTAAAA+GGG - Chr4:54187534-54187553 MsG0480021137.01.T01:intron 20.0%
!! GTACTATAATATATACACAA+AGG + Chr4:54186602-54186621 None:intergenic 20.0%
!! TAATTTGATATTTCAGTTTG+GGG - Chr4:54187002-54187021 MsG0480021137.01.T01:intron 20.0%
!! TAGTTAACTTATTTAACGAA+CGG - Chr4:54187656-54187675 MsG0480021137.01.T01:intron 20.0%
!! TATATCTATTGAATATCAAC+AGG - Chr4:54190061-54190080 MsG0480021137.01.T01:CDS 20.0%
!! TTACTGTAAAAAACACAAAT+GGG + Chr4:54185477-54185496 None:intergenic 20.0%
!! TTCAATGTTAGTTATAAGTT+AGG - Chr4:54189203-54189222 MsG0480021137.01.T01:intron 20.0%
!! TTTACTGTAAAAAACACAAA+TGG + Chr4:54185478-54185497 None:intergenic 20.0%
!! TTTAGTGTTAAGTTAAGAAA+GGG - Chr4:54187940-54187959 MsG0480021137.01.T01:CDS 20.0%
!!! AAATTAGTCTCAAGTTAATA+TGG + Chr4:54186750-54186769 None:intergenic 20.0%
!!! AACACAAGAAATTTTCAATT+TGG - Chr4:54189993-54190012 MsG0480021137.01.T01:CDS 20.0%
!!! ATGTGTTTTTATGAATATAG+GGG - Chr4:54187777-54187796 MsG0480021137.01.T01:intron 20.0%
!!! GTAATACTTTTAAAAGAAAC+AGG + Chr4:54187900-54187919 None:intergenic 20.0%
!!! GTTAATTTGATATTTCAGTT+TGG - Chr4:54187000-54187019 MsG0480021137.01.T01:intron 20.0%
! AAACTAGGTAATAACGATTT+GGG + Chr4:54188454-54188473 None:intergenic 25.0%
! AAATTTCCATGTGTATTATC+AGG - Chr4:54187318-54187337 MsG0480021137.01.T01:intron 25.0%
! AATTGTTAATCAGGAAACTT+GGG - Chr4:54186407-54186426 MsG0480021137.01.T01:CDS 25.0%
! AGCACAAGTGAAAAAATAAA+TGG + Chr4:54189760-54189779 None:intergenic 25.0%
! ATATAAGAGTAAAATTGCAC+AGG + Chr4:54189897-54189916 None:intergenic 25.0%
! ATATATACACAAAGGAAAGA+TGG + Chr4:54186594-54186613 None:intergenic 25.0%
! ATTGAAGACTTTGCATATAA+AGG - Chr4:54185641-54185660 MsG0480021137.01.T01:intron 25.0%
! CACATACTTCAAAAGTAAAA+TGG + Chr4:54187689-54187708 None:intergenic 25.0%
! CCAGATAGTTAAAACTTAAA+AGG - Chr4:54187533-54187552 MsG0480021137.01.T01:intron 25.0%
! CTGTTACCTAAAAAACTTAA+AGG - Chr4:54189422-54189441 MsG0480021137.01.T01:CDS 25.0%
! CTGTTACCTAAAAAACTTAA+AGG + Chr4:54189441-54189422 None:intergenic 25.0%
! GAGAGTTTGTAATAACTTAT+AGG + Chr4:54189497-54189516 None:intergenic 25.0%
! GCATTATATAATACCAAAAG+AGG + Chr4:54186381-54186400 None:intergenic 25.0%
! GTTACAAACATGAAACTTAA+AGG + Chr4:54189247-54189266 None:intergenic 25.0%
! GTTTCTCAATCTTTCTATTT+AGG - Chr4:54185424-54185443 MsG0480021137.01.T01:intron 25.0%
! TAAAATGTAACCAAATGTGT+AGG + Chr4:54189606-54189625 None:intergenic 25.0%
! TAAACTAGGTAATAACGATT+TGG + Chr4:54188455-54188474 None:intergenic 25.0%
! TCAAAGAAGAAAAAGAATAC+TGG - Chr4:54187562-54187581 MsG0480021137.01.T01:intron 25.0%
! TTATTGTGTCAATTCTTTCA+AGG - Chr4:54187999-54188018 MsG0480021137.01.T01:intron 25.0%
! TTGAGCTTCATTAATTTACA+CGG - Chr4:54189930-54189949 MsG0480021137.01.T01:CDS 25.0%
!! ATACTTTTATAAGATCGTCT+AGG + Chr4:54185814-54185833 None:intergenic 25.0%
!! CTGAAACTTTAGAAACTTAA+AGG + Chr4:54189307-54189326 None:intergenic 25.0%
!! TAAAACAATGGTGTCTTTTA+GGG + Chr4:54186334-54186353 None:intergenic 25.0%
!! TAAATGTTTATGTCCTCTTT+TGG - Chr4:54186365-54186384 MsG0480021137.01.T01:CDS 25.0%
!! TTTAACTATCTGGTTTGAAT+CGG + Chr4:54187526-54187545 None:intergenic 25.0%
!!! AAATGTATCCATTTTGTTTC+TGG - Chr4:54188574-54188593 MsG0480021137.01.T01:intron 25.0%
!!! AAGTTTCTAAAGTTTCAGAT+AGG - Chr4:54189309-54189328 MsG0480021137.01.T01:intron 25.0%
!!! AAGTTTTTTAGGTAACAGAT+AGG - Chr4:54189280-54189299 MsG0480021137.01.T01:intron 25.0%
!!! AAGTTTTTTAGGTAACAGAT+AGG + Chr4:54189299-54189280 None:intergenic 25.0%
!!! ACACATGGAAATTTTGATAA+GGG + Chr4:54187312-54187331 None:intergenic 25.0%
!!! ATAAAACTTGTTAAGTTTCC+TGG - Chr4:54187440-54187459 MsG0480021137.01.T01:CDS 25.0%
!!! ATAGGTCCTTTAAGTTTTTT+AGG - Chr4:54189269-54189288 MsG0480021137.01.T01:intron 25.0%
!!! ATAGGTCCTTTAAGTTTTTT+AGG + Chr4:54189288-54189269 None:intergenic 25.0%
!!! CCTTTTAAGTTTTAACTATC+TGG + Chr4:54187536-54187555 None:intergenic 25.0%
!!! CTTTATCATGGCATTTTTTT+AGG - Chr4:54188601-54188620 MsG0480021137.01.T01:intron 25.0%
!!! TACACATGGAAATTTTGATA+AGG + Chr4:54187313-54187332 None:intergenic 25.0%
!!! TATCTGTTTTTGTAGAAGTT+TGG - Chr4:54185608-54185627 MsG0480021137.01.T01:intron 25.0%
!!! TGCAATTTTTTTCAAGTTAG+TGG + Chr4:54188114-54188133 None:intergenic 25.0%
!!! TGCTTTAAGAATTGTTAATC+AGG - Chr4:54186398-54186417 MsG0480021137.01.T01:CDS 25.0%
!!! TGTTTTAGTGCTTTATAACT+TGG - Chr4:54189687-54189706 MsG0480021137.01.T01:intron 25.0%
!!! TTACATTGGTTCAAATGATT+TGG - Chr4:54187916-54187935 MsG0480021137.01.T01:CDS 25.0%
!!! TTATTTGTTGATTCATGTCT+TGG - Chr4:54187038-54187057 MsG0480021137.01.T01:intron 25.0%
!!! TTTTTGTTTCTTCTTTTTCC+AGG - Chr4:54188067-54188086 MsG0480021137.01.T01:intron 25.0%
AAAGTCTACCAGAAACAAAA+TGG + Chr4:54188585-54188604 None:intergenic 30.0%
AATAGGTTATGAATGTTGCA+TGG - Chr4:54188307-54188326 MsG0480021137.01.T01:intron 30.0%
AATTCTAACAGTCAAACAGT+GGG + Chr4:54186778-54186797 None:intergenic 30.0%
ACCAAGGATCATATTAATCA+TGG - Chr4:54187385-54187404 MsG0480021137.01.T01:intron 30.0%
ACCATGATTAATATGATCCT+TGG + Chr4:54187389-54187408 None:intergenic 30.0%
ATACCATGAGCTTCTATTTA+TGG - Chr4:54186230-54186249 MsG0480021137.01.T01:intron 30.0%
ATTAATATGATATCAGAGCC+CGG + Chr4:54188732-54188751 None:intergenic 30.0%
ATTTCAGATTCCTTGAAGTT+GGG + Chr4:54189136-54189155 None:intergenic 30.0%
CAATTAATCCTCTATTGGTA+TGG - Chr4:54189849-54189868 MsG0480021137.01.T01:intron 30.0%
CACCTATAAGTCTATATCAA+TGG - Chr4:54186699-54186718 MsG0480021137.01.T01:intron 30.0%
CATACCAATAGAGGATTAAT+TGG + Chr4:54189851-54189870 None:intergenic 30.0%
CATCTCCAAAACAAAAATGT+TGG - Chr4:54185086-54185105 MsG0480021137.01.T01:CDS 30.0%
CTCCATTGATATAGACTTAT+AGG + Chr4:54186704-54186723 None:intergenic 30.0%
CTGAAACCTTAGAAACTTAA+AGG - Chr4:54189393-54189412 MsG0480021137.01.T01:CDS 30.0%
GAAACAAACTCGAAACTTAA+AGG - Chr4:54189364-54189383 MsG0480021137.01.T01:intron 30.0%
GAATTGTTAATCAGGAAACT+TGG - Chr4:54186406-54186425 MsG0480021137.01.T01:CDS 30.0%
GATTAATATGATCCTTGGTT+TGG + Chr4:54187384-54187403 None:intergenic 30.0%
GATTACATGAATAGTTGACA+AGG + Chr4:54187205-54187224 None:intergenic 30.0%
GCATTATTGCAGCAATTTAA+TGG + Chr4:54188675-54188694 None:intergenic 30.0%
GTTACAAACGTGAAACTTAA+AGG - Chr4:54189453-54189472 MsG0480021137.01.T01:intron 30.0%
GTTCTTTCCTCTATTAAAGA+TGG + Chr4:54188710-54188729 None:intergenic 30.0%
GTTTCATGTTTGTAACAGAT+AGG - Chr4:54189251-54189270 MsG0480021137.01.T01:intron 30.0%
TAATTCTAACAGTCAAACAG+TGG + Chr4:54186779-54186798 None:intergenic 30.0%
TACCATGAGCTTCTATTTAT+GGG - Chr4:54186231-54186250 MsG0480021137.01.T01:intron 30.0%
TACTTCAAAAGTAAAATGGC+AGG + Chr4:54187685-54187704 None:intergenic 30.0%
TAGAAGCTCATGGTATAATT+CGG + Chr4:54186226-54186245 None:intergenic 30.0%
TATGCAAAGTCTTCAATTTC+AGG + Chr4:54185638-54185657 None:intergenic 30.0%
TATTTCAGATTCCTTGAAGT+TGG + Chr4:54189137-54189156 None:intergenic 30.0%
TCTATTGAATATCAACAGGT+TGG - Chr4:54190065-54190084 MsG0480021137.01.T01:CDS 30.0%
TCTTTAATAGAGGAAAGAAC+CGG - Chr4:54188710-54188729 MsG0480021137.01.T01:intron 30.0%
TGAGATTACATCTTACAAAG+TGG - Chr4:54188828-54188847 MsG0480021137.01.T01:intron 30.0%
TTACAAACTCTCTTTGTAAG+TGG - Chr4:54189505-54189524 MsG0480021137.01.T01:intron 30.0%
TTCTTTCCTGATAATACACA+TGG + Chr4:54187327-54187346 None:intergenic 30.0%
TTGATAAAAGAGAAGATACC+AGG + Chr4:54187360-54187379 None:intergenic 30.0%
TTGATATGCTACAATGTACA+TGG - Chr4:54188624-54188643 MsG0480021137.01.T01:intron 30.0%
! AAAATTGCACAGGTTGAATT+TGG + Chr4:54189887-54189906 None:intergenic 30.0%
! ATAAAGCACTAAAACAGACA+CGG + Chr4:54189683-54189702 None:intergenic 30.0%
! ATAGGTCCTTTAAGTTTCTA+AGG + Chr4:54189317-54189298 None:intergenic 30.0%
! CATTTCTGATTTTACTGCAA+CGG + Chr4:54185841-54185860 None:intergenic 30.0%
! CTAAAACAATGGTGTCTTTT+AGG + Chr4:54186335-54186354 None:intergenic 30.0%
! CTAAAAGACACCATTGTTTT+AGG - Chr4:54186333-54186352 MsG0480021137.01.T01:CDS 30.0%
! TGGGTAAATCAACTTTTTGA+TGG + Chr4:54187869-54187888 None:intergenic 30.0%
! TTGCAAATGGCAATTGTTTT+AGG - Chr4:54185943-54185962 MsG0480021137.01.T01:intron 30.0%
!! AAGGACCAACATTTTTGTTT+TGG + Chr4:54185094-54185113 None:intergenic 30.0%
!! AAGTTTCTAAGGTTTCAGAT+AGG + Chr4:54189391-54189410 None:intergenic 30.0%
!! ACTCATCATTTTAACAATGC+TGG - Chr4:54186459-54186478 MsG0480021137.01.T01:CDS 30.0%
!! ATTTTTAACGGGTCATTCAT+GGG - Chr4:54185374-54185393 MsG0480021137.01.T01:intron 30.0%
!! TATTTTTAACGGGTCATTCA+TGG - Chr4:54185373-54185392 MsG0480021137.01.T01:intron 30.0%
!! TTGTTGAAGTTTTGTGATAG+TGG + Chr4:54185292-54185311 None:intergenic 30.0%
!! TTTCCTCTATTAGTCTTGTT+CGG - Chr4:54189025-54189044 MsG0480021137.01.T01:intron 30.0%
!!! AAACAGGTCTGTTTTAAGTT+TGG - Chr4:54188411-54188430 MsG0480021137.01.T01:CDS 30.0%
!!! CTTTGGCTTTTTTGTTTCTT+CGG + Chr4:54185263-54185282 None:intergenic 30.0%
!!! GTTTTGGAGATGTATTTGTA+TGG + Chr4:54185078-54185097 None:intergenic 30.0%
AAAACAAACCAAGGAGAAGA+GGG + Chr4:54185117-54185136 None:intergenic 35.0%
AAAAGAAACAGGGAACATAC+TGG + Chr4:54187889-54187908 None:intergenic 35.0%
AAAGAAACAGGGAACATACT+GGG + Chr4:54187888-54187907 None:intergenic 35.0%
AAGGGACTTATGAAGATTCA+AGG - Chr4:54187958-54187977 MsG0480021137.01.T01:intron 35.0%
ACATGAATAGTTGACAAGGT+TGG + Chr4:54187201-54187220 None:intergenic 35.0%
ACCATGAGCTTCTATTTATG+GGG - Chr4:54186232-54186251 MsG0480021137.01.T01:intron 35.0%
ACTAATAGAGGAAAGAAGCT+AGG + Chr4:54189019-54189038 None:intergenic 35.0%
ACTTTATGAGTCTGTGTTGA+AGG + Chr4:54185327-54185346 None:intergenic 35.0%
ACTTTGTGGATTTGGAAACT+GGG + Chr4:54190190-54190209 None:intergenic 35.0%
AGTTTCAGATAGGTCCTTAA+CGG - Chr4:54189319-54189338 MsG0480021137.01.T01:intron 35.0%
ATAATACAGAGTCACACCTT+AGG + Chr4:54186974-54186993 None:intergenic 35.0%
ATTCTAACAGTCAAACAGTG+GGG + Chr4:54186777-54186796 None:intergenic 35.0%
ATTTGTCTCATGAAATACGG+TGG - Chr4:54188137-54188156 MsG0480021137.01.T01:intron 35.0%
CATTCAACTCCAACAAAGAT+CGG + Chr4:54186265-54186284 None:intergenic 35.0%
CCAACTCTTGAAATGAGTAA+CGG + Chr4:54187166-54187185 None:intergenic 35.0%
CGAAGAAACAAAAAAGCCAA+AGG - Chr4:54185261-54185280 MsG0480021137.01.T01:intron 35.0%
CTATTAAAGATGGACAATCC+AGG + Chr4:54188700-54188719 None:intergenic 35.0%
CTTTAATAGAGGAAAGAACC+GGG - Chr4:54188711-54188730 MsG0480021137.01.T01:intron 35.0%
GCATTCTTGAGAAAATGTCA+TGG + Chr4:54186650-54186669 None:intergenic 35.0%
GCTATGGGAACAAATAAACT+AGG + Chr4:54188469-54188488 None:intergenic 35.0%
GGATCCAATTAATCCTCTAT+TGG - Chr4:54189844-54189863 MsG0480021137.01.T01:intron 35.0%
GGATTGTCCATCTTTAATAG+AGG - Chr4:54188700-54188719 MsG0480021137.01.T01:intron 35.0%
GTTTCACGTTTGTAACAGAT+AGG + Chr4:54189449-54189468 None:intergenic 35.0%
TATCACACGTAAGAATGTCA+AGG + Chr4:54186064-54186083 None:intergenic 35.0%
TATGCCAGTAACTCATTAAG+TGG - Chr4:54188935-54188954 MsG0480021137.01.T01:CDS 35.0%
TCAGCATTGTTAATTGCATC+AGG + Chr4:54187838-54187857 None:intergenic 35.0%
TGAGTTTACCATACCAATAG+AGG + Chr4:54189860-54189879 None:intergenic 35.0%
TGATGCAATTAACAATGCTG+AGG - Chr4:54187837-54187856 MsG0480021137.01.T01:intron 35.0%
TGCTACAATGTACATGGATT+TGG - Chr4:54188630-54188649 MsG0480021137.01.T01:intron 35.0%
TTACCCTAAGTAGAAGTTCA+GGG - Chr4:54186037-54186056 MsG0480021137.01.T01:intron 35.0%
TTATAGATGCATTCTGTGAC+TGG - Chr4:54188861-54188880 MsG0480021137.01.T01:intron 35.0%
TTCTCCACTTAATGAGTTAC+TGG + Chr4:54188942-54188961 None:intergenic 35.0%
TTTAATTATCCGTCCACTGT+AGG - Chr4:54186288-54186307 MsG0480021137.01.T01:intron 35.0%
TTTCAGTTCAGCGAAAAACA+AGG + Chr4:54186164-54186183 None:intergenic 35.0%
TTTCTTGTGTTGAGTCTCAT+CGG + Chr4:54189984-54190003 None:intergenic 35.0%
! AGTAGTTGCTCGATTTTACT+AGG + Chr4:54188170-54188189 None:intergenic 35.0%
! CTAACTCGACTTGAATTGTA+TGG - Chr4:54188245-54188264 MsG0480021137.01.T01:intron 35.0%
! GAATATCAACAGGTTGGATT+TGG - Chr4:54190071-54190090 MsG0480021137.01.T01:CDS 35.0%
! GATGTAGTTTTTCTGTCACT+TGG - Chr4:54189709-54189728 MsG0480021137.01.T01:intron 35.0%
! GTTTCTTCTTTTTCCAGGTT+GGG - Chr4:54188072-54188091 MsG0480021137.01.T01:intron 35.0%
! TCTTTTATCAAGCCAAACCA+AGG - Chr4:54187369-54187388 MsG0480021137.01.T01:intron 35.0%
! TGTTTCTTCTTTTTCCAGGT+TGG - Chr4:54188071-54188090 MsG0480021137.01.T01:intron 35.0%
! TTTTAGGCAATTGCTAGAGT+GGG - Chr4:54185959-54185978 MsG0480021137.01.T01:intron 35.0%
!! GTTTCGAGTTTGTTTCAGAT+AGG + Chr4:54189360-54189379 None:intergenic 35.0%
!! GTTTCTGGTAGACTTTATCA+TGG - Chr4:54188589-54188608 MsG0480021137.01.T01:intron 35.0%
!!! TAAGCAGATCGTTTTGAAGA+AGG + Chr4:54187813-54187832 None:intergenic 35.0%
!!! TCTTCTCCTTGGTTTGTTTT+GGG - Chr4:54185117-54185136 MsG0480021137.01.T01:CDS 35.0%
AAATGTGTAGGTGTAGGTGT+CGG + Chr4:54189594-54189613 None:intergenic 40.0%
AACTCTCTTTGTAAGTGGCT+TGG - Chr4:54189510-54189529 MsG0480021137.01.T01:intron 40.0%
AACTGATTAGGTCACTGTCT+AGG - Chr4:54186182-54186201 MsG0480021137.01.T01:intron 40.0%
AAGTGTGATATGATCAGCGT+CGG - Chr4:54186084-54186103 MsG0480021137.01.T01:intron 40.0%
ACACAATAACATGCAAGCTG+AGG + Chr4:54187988-54188007 None:intergenic 40.0%
ACACCTTAAGTCTACTAGTC+TGG - Chr4:54186801-54186820 MsG0480021137.01.T01:intron 40.0%
ACATGAAACTTAAAGGACCC+AGG + Chr4:54189240-54189259 None:intergenic 40.0%
AGAATCAGTTACAGCCTTAC+AGG - Chr4:54188958-54188977 MsG0480021137.01.T01:CDS 40.0%
AGGAACGATTATCTGCATTC+AGG + Chr4:54185794-54185813 None:intergenic 40.0%
AGTACAGCATGTTTGTGTGT+TGG - Chr4:54186617-54186636 MsG0480021137.01.T01:intron 40.0%
AGTTAAATCACCTGCACACT+GGG - Chr4:54186856-54186875 MsG0480021137.01.T01:intron 40.0%
AGTTGGGAGATCACAAATCT+TGG + Chr4:54189120-54189139 None:intergenic 40.0%
ATAGCTTAACACCACCTGTA+AGG + Chr4:54188975-54188994 None:intergenic 40.0%
ATCCCAGACTAGTAGACTTA+AGG + Chr4:54186807-54186826 None:intergenic 40.0%
ATTGCTGCAATAATGCAACC+TGG - Chr4:54188679-54188698 MsG0480021137.01.T01:intron 40.0%
CAAAACAAACCAAGGAGAAG+AGG + Chr4:54185118-54185137 None:intergenic 40.0%
CAACTTCCCAAAACAAACCA+AGG + Chr4:54185126-54185145 None:intergenic 40.0%
CATACCAAATGAGCCATCTT+AGG + Chr4:54188212-54188231 None:intergenic 40.0%
CATCCGAACAAGACTAATAG+AGG + Chr4:54189031-54189050 None:intergenic 40.0%
CATGAAACTTAAAGGACCCA+GGG + Chr4:54189239-54189258 None:intergenic 40.0%
CCGTTACTCATTTCAAGAGT+TGG - Chr4:54187163-54187182 MsG0480021137.01.T01:CDS 40.0%
CCTTCATATCAACTCCGTTA+AGG + Chr4:54189336-54189355 None:intergenic 40.0%
CTTACAGTGACACGTAAACA+TGG + Chr4:54189658-54189677 None:intergenic 40.0%
GAAATGAGTAACGGCTATAC+TGG + Chr4:54187157-54187176 None:intergenic 40.0%
GAAGCAACTTCACTTTCAGT+TGG + Chr4:54185879-54185898 None:intergenic 40.0%
GACTTTGTGGATTTGGAAAC+TGG + Chr4:54190191-54190210 None:intergenic 40.0%
GAGTATCTACACATATCCCT+TGG + Chr4:54188341-54188360 None:intergenic 40.0%
GGAACGATTATCTGCATTCA+GGG + Chr4:54185793-54185812 None:intergenic 40.0%
GTAACCAAATGTGTAGGTGT+AGG + Chr4:54189600-54189619 None:intergenic 40.0%
GTCAAAATTGGGCACAAAAC+AGG - Chr4:54188395-54188414 MsG0480021137.01.T01:CDS 40.0%
GTTACCCTAAGTAGAAGTTC+AGG - Chr4:54186036-54186055 MsG0480021137.01.T01:intron 40.0%
GTTTCCAAATCCACAAAGTC+CGG - Chr4:54190191-54190210 MsG0480021137.01.T01:CDS 40.0%
TAGTTAAATCACCTGCACAC+TGG - Chr4:54186855-54186874 MsG0480021137.01.T01:intron 40.0%
TCCCCATAAATAGAAGCTCA+TGG + Chr4:54186236-54186255 None:intergenic 40.0%
TCGCTGAACTGAAACTGATT+AGG - Chr4:54186170-54186189 MsG0480021137.01.T01:intron 40.0%
TTAATGGTGCTCTAATCGCT+AGG + Chr4:54188659-54188678 None:intergenic 40.0%
TTCTCGTATAAAACCCAACC+TGG + Chr4:54188088-54188107 None:intergenic 40.0%
TTTAGGCAATTGCTAGAGTG+GGG - Chr4:54185960-54185979 MsG0480021137.01.T01:intron 40.0%
TTTGTGATCTCCCAACTTCA+AGG - Chr4:54189123-54189142 MsG0480021137.01.T01:intron 40.0%
! ATTCGCAAAATGAGGTGTTC+TGG - Chr4:54186896-54186915 MsG0480021137.01.T01:CDS 40.0%
! CACCTTAAGTCTACTAGTCT+GGG - Chr4:54186802-54186821 MsG0480021137.01.T01:intron 40.0%
! CTAGGTTGGGTGTCAAAATT+GGG - Chr4:54188384-54188403 MsG0480021137.01.T01:CDS 40.0%
! GAAGCTAGGTTAGCTAACTA+TGG + Chr4:54189005-54189024 None:intergenic 40.0%
! GATTTTGTTCGTGGCACAAT+AGG - Chr4:54188290-54188309 MsG0480021137.01.T01:intron 40.0%
!! CCTTAACGGAGTTGATATGA+AGG - Chr4:54189333-54189352 MsG0480021137.01.T01:intron 40.0%
!! GTTTGGTGTCAAACATGTGT+TGG - Chr4:54189559-54189578 MsG0480021137.01.T01:CDS 40.0%
!! GTTTTAGGCAATTGCTAGAG+TGG - Chr4:54185958-54185977 MsG0480021137.01.T01:intron 40.0%
!! TCTGAAGCTGATTTTGTTCG+TGG - Chr4:54188281-54188300 MsG0480021137.01.T01:intron 40.0%
!! TGTGATAGTGGTGATTCCTT+TGG + Chr4:54185280-54185299 None:intergenic 40.0%
!! TTGAGGGTATTCGCAAAATG+AGG - Chr4:54186888-54186907 MsG0480021137.01.T01:CDS 40.0%
!!! CAGGTCTGTTTTAAGTTTGG+TGG - Chr4:54188414-54188433 MsG0480021137.01.T01:CDS 40.0%
!!! CTCTTCTCCTTGGTTTGTTT+TGG - Chr4:54185116-54185135 MsG0480021137.01.T01:CDS 40.0%
!!! CTTGGTTTGTTTTGGGAAGT+TGG - Chr4:54185124-54185143 MsG0480021137.01.T01:CDS 40.0%
AACCTAGCCGATTGCAAATG+CGG + Chr4:54188371-54188390 None:intergenic 45.0%
AATCGTACAGTCAGCGTGTT+TGG + Chr4:54185769-54185788 None:intergenic 45.0%
ACACCAGCACTTCAGATTGA+AGG - Chr4:54189533-54189552 MsG0480021137.01.T01:intron 45.0%
ACGTGAAACTTAAAGGACCC+AGG - Chr4:54189460-54189479 MsG0480021137.01.T01:intron 45.0%
ACTATGGGATGTGAGAAAGC+TGG - Chr4:54186935-54186954 MsG0480021137.01.T01:CDS 45.0%
AGATGCACCAGTAGACACTA+TGG - Chr4:54186919-54186938 MsG0480021137.01.T01:CDS 45.0%
AGGACCCTGAACTTCTACTT+AGG + Chr4:54186044-54186063 None:intergenic 45.0%
AGGTCCTAAGATGGCTCATT+TGG - Chr4:54188205-54188224 MsG0480021137.01.T01:intron 45.0%
AGTGACACTCTTGTCTCTTC+AGG + Chr4:54189797-54189816 None:intergenic 45.0%
ATACAGAGTCACACCTTAGG+AGG + Chr4:54186971-54186990 None:intergenic 45.0%
ATACTACATTCTCCACAGCG+AGG + Chr4:54190122-54190141 None:intergenic 45.0%
ATCAGTTACAGCCTTACAGG+TGG - Chr4:54188961-54188980 MsG0480021137.01.T01:CDS 45.0%
ATGTCCACCGCATTTGCAAT+CGG - Chr4:54188361-54188380 MsG0480021137.01.T01:CDS 45.0%
ATTGCTAGAGTGGGGAAATG+TGG - Chr4:54185968-54185987 MsG0480021137.01.T01:intron 45.0%
ATTGGATCCCATTCTTCCCT+TGG + Chr4:54189833-54189852 None:intergenic 45.0%
CACCAGCATCAAGATGCTAT+GGG + Chr4:54188484-54188503 None:intergenic 45.0%
CATTTGCAATCGGCTAGGTT+GGG - Chr4:54188371-54188390 MsG0480021137.01.T01:CDS 45.0%
CGTGAAACTTAAAGGACCCA+GGG - Chr4:54189461-54189480 MsG0480021137.01.T01:intron 45.0%
CTACTACAACTTCCAGGCAT+AGG - Chr4:54188185-54188204 MsG0480021137.01.T01:intron 45.0%
GACACCTACACCTACACATT+TGG - Chr4:54189593-54189612 MsG0480021137.01.T01:CDS 45.0%
GACGTAGACATGAACTGGTT+GGG + Chr4:54185241-54185260 None:intergenic 45.0%
GAGCAACTACTACAACTTCC+AGG - Chr4:54188179-54188198 MsG0480021137.01.T01:intron 45.0%
GAGTGGGGAAATGTGGTTTA+CGG - Chr4:54185975-54185994 MsG0480021137.01.T01:intron 45.0%
GATGCACCAGTAGACACTAT+GGG - Chr4:54186920-54186939 MsG0480021137.01.T01:CDS 45.0%
GGACCCTGAACTTCTACTTA+GGG + Chr4:54186043-54186062 None:intergenic 45.0%
TAGACATGAACTGGTTGGGA+AGG + Chr4:54185237-54185256 None:intergenic 45.0%
TATAGGCCAAATACCTCCCT+GGG + Chr4:54189480-54189499 None:intergenic 45.0%
TCACATCCCATAGTGTCTAC+TGG + Chr4:54186929-54186948 None:intergenic 45.0%
TTATAGGCCAAATACCTCCC+TGG + Chr4:54189481-54189500 None:intergenic 45.0%
TTCCCATAGCATCTTGATGC+TGG - Chr4:54188479-54188498 MsG0480021137.01.T01:intron 45.0%
TTGCATGGAACGATGTCCAA+GGG - Chr4:54188322-54188341 MsG0480021137.01.T01:intron 45.0%
TTGGATCCCATTCTTCCCTT+GGG + Chr4:54189832-54189851 None:intergenic 45.0%
! CTTCAGATTGAAGGCGTGTT+TGG - Chr4:54189542-54189561 MsG0480021137.01.T01:intron 45.0%
! GCTAGGTTGGGTGTCAAAAT+TGG - Chr4:54188383-54188402 MsG0480021137.01.T01:CDS 45.0%
! TGGTTCTACACTACCTCCTA+AGG - Chr4:54186955-54186974 MsG0480021137.01.T01:CDS 45.0%
!! CAAGAGTGTCACTGCAATTG+TGG - Chr4:54189804-54189823 MsG0480021137.01.T01:intron 45.0%
!! GGAAAGAAGATTTGCTGTCC+TGG - Chr4:54187339-54187358 MsG0480021137.01.T01:intron 45.0%
!!! CAATGGTGTCTTTTAGGGTG+AGG + Chr4:54186329-54186348 None:intergenic 45.0%
!!! GATCGTTTTGAAGAAGGCGT+TGG + Chr4:54187807-54187826 None:intergenic 45.0%
ACTGCAATTGTGGCTCCCAA+GGG - Chr4:54189814-54189833 MsG0480021137.01.T01:intron 50.0%
AGTCACTGCCAATGTGCAAC+TGG + Chr4:54188894-54188913 None:intergenic 50.0%
AGTTAGGCCAAATACCTCCC+TGG - Chr4:54189219-54189238 MsG0480021137.01.T01:intron 50.0%
ATTCACGCAGTCAGCGTGTT+TGG - Chr4:54185730-54185749 MsG0480021137.01.T01:intron 50.0%
CAAACCAAGGAGAAGAGGGA+AGG + Chr4:54185113-54185132 None:intergenic 50.0%
CATCGCTATGTACAGAAGCC+AGG + Chr4:54187461-54187480 None:intergenic 50.0%
CCAAATCCACAAAGTCCGGA+AGG - Chr4:54190195-54190214 MsG0480021137.01.T01:CDS 50.0%
CCTTCCGGACTTTGTGGATT+TGG + Chr4:54190198-54190217 None:intergenic 50.0%
CTCATATGGCCTACAGTGGA+CGG + Chr4:54186300-54186319 None:intergenic 50.0%
CTTCGGACGTAGACATGAAC+TGG + Chr4:54185246-54185265 None:intergenic 50.0%
CTTGTTCCTTCCGGACTTTG+TGG + Chr4:54190204-54190223 None:intergenic 50.0%
GAAACTTAAAGGACCCAGGG+AGG - Chr4:54189464-54189483 MsG0480021137.01.T01:intron 50.0%
GAAACTTAAAGGACCCAGGG+AGG + Chr4:54189483-54189464 None:intergenic 50.0%
GCACCAGCATCAAGATGCTA+TGG + Chr4:54188485-54188504 None:intergenic 50.0%
GCATTTGCAATCGGCTAGGT+TGG - Chr4:54188370-54188389 MsG0480021137.01.T01:CDS 50.0%
GGACGTAGACATGAACTGGT+TGG + Chr4:54185242-54185261 None:intergenic 50.0%
GGAGTGACACCGATCTTTGT+TGG - Chr4:54186253-54186272 MsG0480021137.01.T01:intron 50.0%
GTGTCTCATATGGCCTACAG+TGG + Chr4:54186304-54186323 None:intergenic 50.0%
GTTAGGCCAAATACCTCCCT+GGG - Chr4:54189220-54189239 MsG0480021137.01.T01:intron 50.0%
GTTGCATGGAACGATGTCCA+AGG - Chr4:54188321-54188340 MsG0480021137.01.T01:intron 50.0%
TCAGCGCTTCTTGTTCCTTC+CGG + Chr4:54190213-54190232 None:intergenic 50.0%
TCCAGGCATAGGTCCTAAGA+TGG - Chr4:54188196-54188215 MsG0480021137.01.T01:intron 50.0%
TGGGGAAATGTGGTTTACGG+CGG - Chr4:54185978-54185997 MsG0480021137.01.T01:intron 50.0%
! ACGCCTTCAATCTGAAGTGC+TGG + Chr4:54189539-54189558 None:intergenic 50.0%
! CAGCGTGTTTGGAACACTGA+TGG + Chr4:54185758-54185777 None:intergenic 50.0%
!! AAAGGACCCAGGGAGGTATT+TGG - Chr4:54189471-54189490 MsG0480021137.01.T01:intron 50.0%
!! AAAGGACCCAGGGAGGTATT+TGG + Chr4:54189490-54189471 None:intergenic 50.0%
!! GGGTGAGGAAGTGTCTCATA+TGG + Chr4:54186314-54186333 None:intergenic 50.0%
ACACTGGGAAGAGACGCTTG+AGG - Chr4:54186871-54186890 MsG0480021137.01.T01:intron 55.0%
CACCGCATTTGCAATCGGCT+AGG - Chr4:54188366-54188385 MsG0480021137.01.T01:CDS 55.0%
CACTGCAATTGTGGCTCCCA+AGG - Chr4:54189813-54189832 MsG0480021137.01.T01:intron 55.0%
CACTGGGAAGAGACGCTTGA+GGG - Chr4:54186872-54186891 MsG0480021137.01.T01:intron 55.0%
CTAGCCGATTGCAAATGCGG+TGG + Chr4:54188368-54188387 None:intergenic 55.0%
CTTGTGTCCATCCGCGTTCA+AGG - Chr4:54190148-54190167 MsG0480021137.01.T01:CDS 55.0%
GCACATTGGCAGTGACTGAC+TGG - Chr4:54188897-54188916 MsG0480021137.01.T01:CDS 55.0%
GCCATCTTAGGACCTATGCC+TGG + Chr4:54188200-54188219 None:intergenic 55.0%
GGAAACTGGGCTTGAACCTG+CGG + Chr4:54190177-54190196 None:intergenic 55.0%
GTCCACTGCCAGTTGCACAT+TGG - Chr4:54188883-54188902 MsG0480021137.01.T01:CDS 55.0%
GTCGGAGGGTTTGATGGAAG+CGG + Chr4:54185190-54185209 None:intergenic 55.0%
GTGGCTCCCAAGGGAAGAAT+GGG - Chr4:54189823-54189842 MsG0480021137.01.T01:intron 55.0%
TCTCCACAGCGAGGTCTTAG+AGG + Chr4:54190113-54190132 None:intergenic 55.0%
TGCCAATGTGCAACTGGCAG+TGG + Chr4:54188888-54188907 None:intergenic 55.0%
TGGTCCTTCCCTCTTCTCCT+TGG - Chr4:54185106-54185125 MsG0480021137.01.T01:CDS 55.0%
TGTGGCTCCCAAGGGAAGAA+TGG - Chr4:54189822-54189841 MsG0480021137.01.T01:intron 55.0%
AGCGTCTCTTCCCAGTGTGC+AGG + Chr4:54186869-54186888 None:intergenic 60.0%
GTCGGAGTCGGAGGGTTTGA+TGG + Chr4:54185196-54185215 None:intergenic 60.0%
GTGTCCATCCGCGTTCAAGG+AGG - Chr4:54190151-54190170 MsG0480021137.01.T01:CDS 60.0%
TGGTTGGGAAGGTGAAGCGC+CGG + Chr4:54185226-54185245 None:intergenic 60.0%
!! AAGGTGAAGCGCCGGATGTG+GGG + Chr4:54185218-54185237 None:intergenic 60.0%
!! ACGCCTCTAAGACCTCGCTG+TGG - Chr4:54190107-54190126 MsG0480021137.01.T01:CDS 60.0%
!! GAAGGTGAAGCGCCGGATGT+GGG + Chr4:54185219-54185238 None:intergenic 60.0%
ACCTGCGGCCTCCTTGAACG+CGG + Chr4:54190162-54190181 None:intergenic 65.0%
GATGTGGGGTCGGAGTCGGA+GGG + Chr4:54185204-54185223 None:intergenic 65.0%
TCCGACTCCGACCCCACATC+CGG - Chr4:54185204-54185223 MsG0480021137.01.T01:intron 65.0%
!! GGAAGGTGAAGCGCCGGATG+TGG + Chr4:54185220-54185239 None:intergenic 65.0%
!! TGAAGCGCCGGATGTGGGGT+CGG + Chr4:54185214-54185233 None:intergenic 65.0%
GCCGGATGTGGGGTCGGAGT+CGG + Chr4:54185208-54185227 None:intergenic 70.0%
GCGGCCTCCTTGAACGCGGA+TGG + Chr4:54190158-54190177 None:intergenic 70.0%
GGATGTGGGGTCGGAGTCGG+AGG + Chr4:54185205-54185224 None:intergenic 70.0%
TCCGCGTTCAAGGAGGCCGC+AGG - Chr4:54190158-54190177 MsG0480021137.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 54185069 54190232 54185069 ID=MsG0480021137.01;Name=MsG0480021137.01
Chr4 mRNA 54185069 54190232 54185069 ID=MsG0480021137.01.T01;Parent=MsG0480021137.01;Name=MsG0480021137.01.T01;_AED=0.43;_eAED=0.58;_QI=0|0|0|1|0.63|0.58|12|0|537
Chr4 exon 54189906 54190232 54189906 ID=MsG0480021137.01.T01:exon:3085;Parent=MsG0480021137.01.T01
Chr4 exon 54189555 54189678 54189555 ID=MsG0480021137.01.T01:exon:3084;Parent=MsG0480021137.01.T01
Chr4 exon 54189389 54189454 54189389 ID=MsG0480021137.01.T01:exon:3083;Parent=MsG0480021137.01.T01
Chr4 exon 54188873 54188991 54188873 ID=MsG0480021137.01.T01:exon:3082;Parent=MsG0480021137.01.T01
Chr4 exon 54188325 54188459 54188325 ID=MsG0480021137.01.T01:exon:3081;Parent=MsG0480021137.01.T01
Chr4 exon 54187895 54187961 54187895 ID=MsG0480021137.01.T01:exon:3080;Parent=MsG0480021137.01.T01
Chr4 exon 54187413 54187504 54187413 ID=MsG0480021137.01.T01:exon:3079;Parent=MsG0480021137.01.T01
Chr4 exon 54187075 54187212 54187075 ID=MsG0480021137.01.T01:exon:3078;Parent=MsG0480021137.01.T01
Chr4 exon 54186885 54186989 54186885 ID=MsG0480021137.01.T01:exon:3077;Parent=MsG0480021137.01.T01
Chr4 exon 54186319 54186525 54186319 ID=MsG0480021137.01.T01:exon:3076;Parent=MsG0480021137.01.T01
Chr4 exon 54185436 54185519 54185436 ID=MsG0480021137.01.T01:exon:3075;Parent=MsG0480021137.01.T01
Chr4 exon 54185069 54185218 54185069 ID=MsG0480021137.01.T01:exon:3074;Parent=MsG0480021137.01.T01
Chr4 CDS 54189906 54190232 54189906 ID=MsG0480021137.01.T01:cds;Parent=MsG0480021137.01.T01
Chr4 CDS 54189555 54189678 54189555 ID=MsG0480021137.01.T01:cds;Parent=MsG0480021137.01.T01
Chr4 CDS 54189389 54189454 54189389 ID=MsG0480021137.01.T01:cds;Parent=MsG0480021137.01.T01
Chr4 CDS 54188873 54188991 54188873 ID=MsG0480021137.01.T01:cds;Parent=MsG0480021137.01.T01
Chr4 CDS 54188325 54188459 54188325 ID=MsG0480021137.01.T01:cds;Parent=MsG0480021137.01.T01
Chr4 CDS 54187895 54187961 54187895 ID=MsG0480021137.01.T01:cds;Parent=MsG0480021137.01.T01
Chr4 CDS 54187413 54187504 54187413 ID=MsG0480021137.01.T01:cds;Parent=MsG0480021137.01.T01
Chr4 CDS 54187075 54187212 54187075 ID=MsG0480021137.01.T01:cds;Parent=MsG0480021137.01.T01
Chr4 CDS 54186885 54186989 54186885 ID=MsG0480021137.01.T01:cds;Parent=MsG0480021137.01.T01
Chr4 CDS 54186319 54186525 54186319 ID=MsG0480021137.01.T01:cds;Parent=MsG0480021137.01.T01
Chr4 CDS 54185436 54185519 54185436 ID=MsG0480021137.01.T01:cds;Parent=MsG0480021137.01.T01
Chr4 CDS 54185069 54185218 54185069 ID=MsG0480021137.01.T01:cds;Parent=MsG0480021137.01.T01
Gene Sequence

>MsG0480021137.01.T01

ATGCTTCCATACAAATACATCTCCAAAACAAAAATGTTGGTCCTTCCCTCTTCTCCTTGGTTTGTTTTGGGAAGTTGGAGAATCAAAGCTATGATCATGTCTGATACTACAACAACATCCGCTTCCATCAAACCCTCCGACTCCGACCCCACATCCGGCGCTTCACCTTCCCAACCAGTTCATGTCTACGTCCGAAGAAACAAAAAAGCCAAAGGAATCACCACTATCACAAAACTTCAACAAAATCAACATCTACCTTCAACACAGACTCATAAAGTAACTAACTTTTTCATCATTGATTCTTTATTTTTAACGGGTCATTCATGGAAGTTTGGTTTGCCTGAAATTGAAGACTTTGCATATAAAGGATCAAATGAATTGACTCAGTGCAGTAAGTACTTCTTTGCTAAAGTTTGTTATGCTGATTTTAATGCATTCACGCAGTCAGCGTTAAAATCAGAAATGAGCTTAGATGTGACTCCAACTGAAAGTGAAGTTGCTTCTACAACACATAGCAGCCATATGAGACACTTCCTCACCCTAAAAGACACCATTGTTTTAGGTATTTTTCATAAATGTTTATGTCCTCTTTTGGTATTATATAATGCTTTAAGAATTGTTAATCAGGAAACTTGGTTCATATATGATATAGTTAAATCACCTGCACACTGGGAAGAGACGCTTGAGGGTATTCGCAAAATGAGGTGTTCTGGAGATGCACCAGTAGACACTATGGGATGTGAGAAAGCTGGTTCTACACTACCTCCTAAGGAAAGAAGATTTGCTGTCCTGGTATCTTCTCTTTTATCAAGCCAAACCAAGGATCATATTAATCATGGGGCAATCCAACGCCTTCTTCAAAACGATCTGCTTACTCCTGATGCAATTAACAATGCTGAGGAAGAAACCATCAAAAAGTTGATTTACCCAGTTGGGTTTTATACGAGAAAAGCCACTAACTTGAAAAAAATTGCAAATATTTGTCTCATGAAATACGGTGGAGACATACCTAGTAAAATCGAGCAACTACTACAACTTCCAGGCATAGGTCCTAAGATGGCTCATTTGGTTATGAATGTTGCATGGAACGATGTCCAAGGGATATGTGTAGATACTCATGTCCACCGCATTTGCAATCGGCTAGGTTGGGTGTCAAAATTGGGCACAAAACAGAGAGCTAGAGAGAATTGTAAAATTTCTAAAACTAATTTCTTTGATTATGAATTGAGATTACATCTTACAAAGTGGAATCATATATTTATAGATGCATTCTGTGACTGGTCCACTGCCAGTTGCACATTGGCAGTGACTGACTGGTGTGAGTCAGTCAGTTATGCCAGTAACTCATTAAGTGGAGAATCAGTTACAGCCTTACAGGTGAAAACTTTGACACCTGAAGAGACAAGAGTGTCACTGCAATTGTGGCTCCCAAGGGAAGAATGGGATCCAATTAATCCTCTATTGGTTGGATTTGGACAGACAATTTGTACGCCTCTAAGACCTCGCTGTGGAGAATGTAGTATAAGTCACTTGTGTCCATCCGCGTTCAAGGAGGCCGCAGGTTCAAGCCCAGTTTCCAAATCCACAAAGTCCGGAAGGAACAAGAAGCGCTGA
Protein sequence

>MsG0480021137.01.T01

MLPYKYISKTKMLVLPSSPWFVLGSWRIKAMIMSDTTTTSASIKPSDSDPTSGASPSQPVHVYVRRNKKAKGITTITKLQQNQHLPSTQTHKVTNFFIIDSLFLTGHSWKFGLPEIEDFAYKGSNELTQCSKYFFAKVCYADFNAFTQSALKSEMSLDVTPTESEVASTTHSSHMRHFLTLKDTIVLGIFHKCLCPLLVLYNALRIVNQETWFIYDIVKSPAHWEETLEGIRKMRCSGDAPVDTMGCEKAGSTLPPKERRFAVLVSSLLSSQTKDHINHGAIQRLLQNDLLTPDAINNAEEETIKKLIYPVGFYTRKATNLKKIANICLMKYGGDIPSKIEQLLQLPGIGPKMAHLVMNVAWNDVQGICVDTHVHRICNRLGWVSKLGTKQRARENCKISKTNFFDYELRLHLTKWNHIFIDAFCDWSTASCTLAVTDWCESVSYASNSLSGESVTALQVKTLTPEETRVSLQLWLPREEWDPINPLLVGFGQTICTPLRPRCGECSISHLCPSAFKEAAGSSPVSKSTKSGRNKKR*