AlfalfaGEDB | MsG0480021254.01

M. sativa cultivar ZhongmuNo.1 / MsG0480021254.01

KEGG: -
GO: GO:0046983
PFAM: PF00010

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021254.01.T01	XP_003606932.1	90.265	339	16	2	149	486	22	344	0	621

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021254.01.T01	Q8GY61	44.649	271	89	6	215	456	92	330	4.01E-55	190

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021254.01.T01	G7JHB9	90.265	339	16	2	149	486	22	344	0.0	621

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047910.01	MsG0480021254.01	0.871661	5.763832e-67	2.343996e-63
MsG0080047945.01	MsG0480021254.01	0.891676	3.196212e-74	2.830441e-70
MsG0080047955.01	MsG0480021254.01	0.859407	4.226945e-63	1.115292e-59
MsG0080047956.01	MsG0480021254.01	0.866456	2.814709e-65	9.492356e-62
MsG0080048059.01	MsG0480021254.01	0.813146	2.966140e-51	1.921581e-48
MsG0080048528.01	MsG0480021254.01	0.826214	3.067274e-54	2.858290e-51
MsG0080048611.01	MsG0480021254.01	0.846884	1.640482e-59	2.864287e-56
MsG0080048776.01	MsG0480021254.01	0.816532	5.267387e-52	3.741926e-49
MsG0080048777.01	MsG0480021254.01	0.842517	2.464667e-58	3.746335e-55
MsG0080048780.01	MsG0480021254.01	0.842719	2.177388e-58	3.330165e-55

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021254.01.T01	MTR_4g070320	90.265	339	16	2	149	486	22	344	0.0	621
MsG0480021254.01.T01	MTR_3g116770	52.926	393	109	15	149	486	26	397	6.28e-114	342
MsG0480021254.01.T01	MTR_3g116770	52.792	394	109	16	149	486	26	398	3.60e-112	337
MsG0480021254.01.T01	MTR_7g053410	51.691	207	84	6	196	388	220	424	4.46e-51	181
MsG0480021254.01.T01	MTR_7g053410	51.691	207	84	6	196	388	220	424	8.54e-51	181
MsG0480021254.01.T01	MTR_5g048860	46.332	259	102	13	246	486	319	558	1.70e-47	172
MsG0480021254.01.T01	MTR_8g012290	58.278	151	57	3	233	381	242	388	6.77e-45	164
MsG0480021254.01.T01	MTR_8g012290	58.278	151	57	3	233	381	242	388	6.82e-45	164
MsG0480021254.01.T01	MTR_8g065740	54.088	159	68	3	215	372	238	392	1.50e-44	163
MsG0480021254.01.T01	MTR_1g017350	64.754	122	29	2	265	372	226	347	1.64e-43	159

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021254.01.T01	AT4G34530	44.649	271	89	6	215	456	92	330	4.09e-56	190
MsG0480021254.01.T01	AT2G18300	59.627	161	55	5	216	375	124	275	9.85e-51	176
MsG0480021254.01.T01	AT1G68920	39.542	306	137	7	202	485	205	484	4.90e-50	178
MsG0480021254.01.T01	AT1G68920	40.956	293	125	6	206	485	228	485	7.09e-50	177
MsG0480021254.01.T01	AT1G68920	40.956	293	125	6	206	485	228	485	7.09e-50	177
MsG0480021254.01.T01	AT1G68920	40.956	293	125	6	206	485	228	485	7.09e-50	177
MsG0480021254.01.T01	AT2G18300	60.897	156	51	5	216	370	124	270	8.73e-50	174
MsG0480021254.01.T01	AT3G07340	42.857	280	124	7	205	471	195	451	1.21e-49	176
MsG0480021254.01.T01	AT2G18300	60.897	156	51	5	216	370	124	270	2.41e-49	173
MsG0480021254.01.T01	AT3G07340	53.093	194	70	4	205	398	195	367	2.49e-49	175

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Find 103 sgRNAs with CRISPR-Local

Find 890 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCCACGGCATATCCGA+CGG	0.663585	4:+55940858	MsG0480021254.01.T01:CDS
AAAATCACCTTCCCAAGTTG+AGG	0.508180	4:-55953930	None:intergenic
AAAATCACTGAGCAAACAAA+GGG	0.564488	4:+55952432	MsG0480021254.01.T01:CDS
AACAAAATTGCAGGCAAAGC+TGG	0.365496	4:+55953066	MsG0480021254.01.T01:CDS
AACTCTATGAAACCCGACCC+GGG	0.629719	4:+55952303	MsG0480021254.01.T01:CDS
AAGGAAAGCTGATAACAAGG+TGG	0.715030	4:+55952356	MsG0480021254.01.T01:CDS
AATTGAATTGAAGATATGCA+GGG	0.606589	4:-55953649	None:intergenic
AATTTCTGAAACATGGCAGG+CGG	0.679632	4:-55940829	None:intergenic
AATTTGTATCTACCTGTAAA+TGG	0.288243	4:-55954010	None:intergenic
ACAAGATCCACAACAATAGT+TGG	0.446188	4:-55941282	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCACTGAGCAAACAAA+GGG	+	Chr4:55952432-55952451	MsG0480021254.01.T01:CDS	30.0%
AAACAATACAGCAACCAAAT+TGG	-	Chr4:55941188-55941207	None:intergenic	30.0%
AAAGGACTTATCAATATCTG+TGG	-	Chr4:55954143-55954162	None:intergenic	30.0%
AAATGGCAACAAGTATCTTA+AGG	-	Chr4:55951722-55951741	None:intergenic	30.0%
AACCTAAAAGATTAGCGAAT+TGG	+	Chr4:55950331-55950350	MsG0480021254.01.T01:intron	30.0%
AAGCAATATTGTAAGGTAAG+GGG	-	Chr4:55948592-55948611	None:intergenic	30.0%
AAGCTTGAAGCAATATTGTA+AGG	-	Chr4:55948599-55948618	None:intergenic	30.0%
AAGGACTTATCAATATCTGT+GGG	-	Chr4:55954142-55954161	None:intergenic	30.0%
AAGTATATTCAAATCGGGTA+TGG	-	Chr4:55949422-55949441	None:intergenic	30.0%
AATAGAAAAACTGAAAGGAG+TGG	+	Chr4:55950924-55950943	MsG0480021254.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	55940798	55954485	55940798	ID=MsG0480021254.01;Name=MsG0480021254.01
Chr4	mRNA	55940798	55954485	55940798	ID=MsG0480021254.01.T01;Parent=MsG0480021254.01;Name=MsG0480021254.01.T01;_AED=0.44;_eAED=0.44;_QI=0\|0.62\|0.55\|0.66\|1\|1\|9\|123\|486
Chr4	exon	55940798	55940983	55940798	ID=MsG0480021254.01.T01:exon:6841;Parent=MsG0480021254.01.T01
Chr4	exon	55941225	55941325	55941225	ID=MsG0480021254.01.T01:exon:6842;Parent=MsG0480021254.01.T01
Chr4	exon	55941989	55942120	55941989	ID=MsG0480021254.01.T01:exon:6843;Parent=MsG0480021254.01.T01
Chr4	exon	55952128	55952611	55952128	ID=MsG0480021254.01.T01:exon:6844;Parent=MsG0480021254.01.T01
Chr4	exon	55953006	55953140	55953006	ID=MsG0480021254.01.T01:exon:6845;Parent=MsG0480021254.01.T01
Chr4	exon	55953283	55953354	55953283	ID=MsG0480021254.01.T01:exon:6846;Parent=MsG0480021254.01.T01
Chr4	exon	55953605	55953814	55953605	ID=MsG0480021254.01.T01:exon:6847;Parent=MsG0480021254.01.T01
Chr4	exon	55953917	55954019	55953917	ID=MsG0480021254.01.T01:exon:6848;Parent=MsG0480021254.01.T01
Chr4	exon	55954325	55954485	55954325	ID=MsG0480021254.01.T01:exon:6849;Parent=MsG0480021254.01.T01
Chr4	CDS	55940798	55940983	55940798	ID=MsG0480021254.01.T01:cds;Parent=MsG0480021254.01.T01
Chr4	CDS	55941225	55941325	55941225	ID=MsG0480021254.01.T01:cds;Parent=MsG0480021254.01.T01
Chr4	CDS	55941989	55942120	55941989	ID=MsG0480021254.01.T01:cds;Parent=MsG0480021254.01.T01
Chr4	CDS	55952128	55952611	55952128	ID=MsG0480021254.01.T01:cds;Parent=MsG0480021254.01.T01
Chr4	CDS	55953006	55953140	55953006	ID=MsG0480021254.01.T01:cds;Parent=MsG0480021254.01.T01
Chr4	CDS	55953283	55953354	55953283	ID=MsG0480021254.01.T01:cds;Parent=MsG0480021254.01.T01
Chr4	CDS	55953605	55953814	55953605	ID=MsG0480021254.01.T01:cds;Parent=MsG0480021254.01.T01
Chr4	CDS	55953917	55954019	55953917	ID=MsG0480021254.01.T01:cds;Parent=MsG0480021254.01.T01
Chr4	CDS	55954325	55954362	55954325	ID=MsG0480021254.01.T01:cds;Parent=MsG0480021254.01.T01
Chr4	three_prime_UTR	55954363	55954485	55954363	ID=MsG0480021254.01.T01:three_prime_utr;Parent=MsG0480021254.01.T01

Gene Sequence

>MsG0480021254.01.T01

ATGGTTTGCCCGGGAAAAATCAAAATTCAAACCGCCTGCCATGTTTCAGAAATTGCAGCAAAAAGCCACGGCATATCCGACGGACTGCCCCTGGGACGCGTGATTCAGCAGAGAATCTCTGATCTGCTATTGCCATCGGTTGTCAAGTCAACCTACACAAAAGCTGTTGCAGCAGGCGTGACAGGGGTTGGTTGTGTTGAGTTGTTGTGGTTTTCTATTTCAAGTAAGACTTTTTCTATCTGCCCAACTATTGTTGTGGATCTTGTTGCTGCCGCCTTCTTCTTCTTGGGTGGAACCCCTGGCAAAAGGTTTGCGATGAGCGGTTTTGCGATGGCTTATGCCCCTGGGAAATTCCCTCACAAACATCCAGTTTGCCAGGGATTCCGTCCTTTTGCCAGGGATTTTGCCCCTGACAAAATGAGGAACCATTTCCGACATGACAGTGTTGAAAGACAAAGAGCAAGGAAGAAGTTCCAACATGAACATGAACACGAACAAGATCAGCAACACCGACGTTACTTTTCGGGAAATGGTTTATCTTCACAACAATTTTTGATGGTTGGTTGTGATTCTGCTCTTGGTGAAGTTGTAGCTAACTCTATGAAACCCGACCCGGGTTTCGAAAACGTCGAAGAAACCATTAAGAAAAGGAAAGCTGATAACAAGGTGGATATAAAGTCCAAAGACAAGAGGATCAAAGTGAGTGTTGAAGAAGGTGAATCCAAAATCACTGAGCAAACAAAGGGACAGAAGAATACAAAGTTGAAAAATAGAGAAAATTGTGATGATGTTGGTTCCAAGGAAAATTCGAAAGGTTCAGAGATTCAAAATCAAAAGCCTGATTACATTCATGTTCGAGCACGTCGCGGTCAAGCTACTGATAGTCATAGCTTAGCTGAAAGAGTTAGAAGGGAAAAAATAAGCGAAAGGATGAAGTATTTGCAAGATTTAGTACCAGGATGTAACAAAATTGCAGGCAAAGCTGGAATGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAAAGACAAGTTGAGTTCTTGTCAATGAAATTAGCAGCTGTAAACCCAAGACTTGACTTCAACATTGATGAATTGTTTGCCAAAGAGGTGTTTACTCAAAATTTTCCAATGATGCAATCAGAAATGTCTAACCCTGCATATCTTCAATTCAATTCAACACAACAACTAGTTTCATGTTGTGGTGGATTGATAAACAATATGGGGATAGTCCCTCCGGAAATTGGGGTTCGAAGGAACATTAATGCACCGGCATCTGCATCTTTACCTGAAATCTTTCTTGACTCATCATGTTTCACTCATATCCTACCATCCTCAACTTGGGAAGGTGATTTTCAAAATCTTCATAGTGTGGATTTTGATCAAGGAAGATCAACATCATTTCCTTCTCAACCATTTACAGGCATGATTGAAGCTAGCAATCTGAAGATGGAGATGTAA

Protein sequence

>MsG0480021254.01.T01

MVCPGKIKIQTACHVSEIAAKSHGISDGLPLGRVIQQRISDLLLPSVVKSTYTKAVAAGVTGVGCVELLWFSISSKTFSICPTIVVDLVAAAFFFLGGTPGKRFAMSGFAMAYAPGKFPHKHPVCQGFRPFARDFAPDKMRNHFRHDSVERQRARKKFQHEHEHEQDQQHRRYFSGNGLSSQQFLMVGCDSALGEVVANSMKPDPGFENVEETIKKRKADNKVDIKSKDKRIKVSVEEGESKITEQTKGQKNTKLKNRENCDDVGSKENSKGSEIQNQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDELFAKEVFTQNFPMMQSEMSNPAYLQFNSTQQLVSCCGGLINNMGIVPPEIGVRRNINAPASASLPEIFLDSSCFTHILPSSTWEGDFQNLHSVDFDQGRSTSFPSQPFTGMIEASNLKMEM*