Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021357.01.T01 | XP_003607108.1 | 89.967 | 299 | 10 | 1 | 1 | 279 | 17 | 315 | 0 | 548 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021357.01.T01 | A0A2P1GIY9 | 51.961 | 306 | 120 | 2 | 1 | 279 | 18 | 323 | 1.14E-113 | 333 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021357.01.T01 | G7JL30 | 89.967 | 299 | 10 | 1 | 1 | 279 | 17 | 315 | 0.0 | 548 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0480021357.01 | MsG0480021360.01 | 0.810809 | 9.582892e-51 | 5.833939e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0580026320.01 | MsG0480021357.01 | PPI |
| MsG0480021357.01 | MsG0780039304.01 | PPI |
| MsG0480021357.01 | MsG0080047875.01 | PPI |
| MsG0480021357.01 | MsG0480023996.01 | PPI |
| MsG0480021357.01 | MsG0480019714.01 | PPI |
| MsG0480021357.01 | MsG0880045356.01 | PPI |
| MsG0480021357.01 | MsG0480021356.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021357.01.T01 | MTR_4g072320 | 89.967 | 299 | 10 | 1 | 1 | 279 | 17 | 315 | 0.0 | 548 |
| MsG0480021357.01.T01 | MTR_4g072350 | 79.934 | 304 | 35 | 3 | 1 | 278 | 17 | 320 | 9.76e-175 | 485 |
| MsG0480021357.01.T01 | MTR_4g072360 | 77.632 | 304 | 42 | 3 | 1 | 278 | 17 | 320 | 1.10e-168 | 469 |
| MsG0480021357.01.T01 | MTR_6g073110 | 56.954 | 302 | 104 | 3 | 1 | 276 | 17 | 318 | 2.57e-125 | 360 |
| MsG0480021357.01.T01 | MTR_0374s0050 | 49.508 | 305 | 120 | 3 | 1 | 279 | 20 | 316 | 1.78e-99 | 294 |
| MsG0480021357.01.T01 | MTR_3g083130 | 47.351 | 302 | 124 | 5 | 1 | 276 | 21 | 313 | 1.87e-90 | 271 |
| MsG0480021357.01.T01 | MTR_4g036845 | 42.574 | 303 | 149 | 4 | 1 | 279 | 14 | 315 | 3.48e-81 | 247 |
| MsG0480021357.01.T01 | MTR_5g097900 | 50.000 | 280 | 113 | 4 | 1 | 255 | 20 | 297 | 6.36e-80 | 244 |
| MsG0480021357.01.T01 | MTR_5g097910 | 50.000 | 280 | 113 | 4 | 1 | 255 | 20 | 297 | 8.71e-80 | 244 |
| MsG0480021357.01.T01 | MTR_5g097940 | 50.000 | 280 | 113 | 4 | 1 | 255 | 20 | 297 | 8.71e-80 | 244 |
| MsG0480021357.01.T01 | MTR_8g070095 | 43.750 | 288 | 136 | 5 | 15 | 279 | 35 | 319 | 1.66e-77 | 238 |
| MsG0480021357.01.T01 | MTR_8g070115 | 40.667 | 300 | 151 | 5 | 4 | 279 | 19 | 315 | 1.08e-73 | 228 |
| MsG0480021357.01.T01 | MTR_4g021350 | 41.333 | 300 | 147 | 6 | 4 | 279 | 19 | 313 | 8.03e-70 | 218 |
| MsG0480021357.01.T01 | MTR_7g063580 | 42.754 | 276 | 133 | 5 | 25 | 279 | 83 | 354 | 8.35e-69 | 217 |
| MsG0480021357.01.T01 | MTR_4g021410 | 41.751 | 297 | 135 | 6 | 4 | 276 | 20 | 302 | 8.71e-65 | 205 |
| MsG0480021357.01.T01 | MTR_6g072650 | 66.443 | 149 | 28 | 1 | 130 | 278 | 10 | 136 | 1.05e-64 | 199 |
| MsG0480021357.01.T01 | MTR_4g021410 | 42.599 | 277 | 124 | 5 | 21 | 276 | 3 | 265 | 1.43e-63 | 201 |
| MsG0480021357.01.T01 | MTR_4g021450 | 41.472 | 299 | 137 | 6 | 4 | 278 | 20 | 304 | 2.65e-63 | 201 |
| MsG0480021357.01.T01 | MTR_4g021350 | 40.809 | 272 | 133 | 5 | 4 | 252 | 19 | 285 | 3.77e-60 | 192 |
| MsG0480021357.01.T01 | MTR_7g070500 | 35.786 | 299 | 160 | 8 | 4 | 276 | 26 | 318 | 4.18e-55 | 181 |
| MsG0480021357.01.T01 | MTR_4g021410 | 46.535 | 202 | 94 | 3 | 76 | 276 | 38 | 226 | 1.42e-53 | 174 |
| MsG0480021357.01.T01 | MTR_4g021450 | 45.588 | 204 | 97 | 3 | 76 | 278 | 38 | 228 | 5.61e-53 | 172 |
| MsG0480021357.01.T01 | MTR_4g021450 | 48.333 | 180 | 88 | 2 | 100 | 278 | 10 | 185 | 3.24e-52 | 169 |
| MsG0480021357.01.T01 | MTR_7g070500 | 36.296 | 270 | 143 | 6 | 4 | 250 | 26 | 289 | 1.42e-49 | 166 |
| MsG0480021357.01.T01 | MTR_6g072710 | 64.486 | 107 | 38 | 0 | 148 | 254 | 1 | 107 | 1.04e-46 | 152 |
| MsG0480021357.01.T01 | MTR_4g072060 | 33.808 | 281 | 154 | 6 | 1 | 250 | 11 | 290 | 1.09e-46 | 159 |
| MsG0480021357.01.T01 | MTR_6g072705 | 66.038 | 53 | 17 | 1 | 58 | 110 | 34 | 85 | 2.83e-18 | 77.8 |
| MsG0480021357.01.T01 | MTR_3g092140 | 26.159 | 302 | 168 | 10 | 14 | 262 | 73 | 372 | 5.43e-14 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021357.01.T01 | AT1G59960 | 47.059 | 306 | 135 | 4 | 1 | 279 | 21 | 326 | 1.14e-100 | 297 |
| MsG0480021357.01.T01 | AT1G59950 | 45.425 | 306 | 140 | 4 | 1 | 279 | 15 | 320 | 1.40e-95 | 284 |
| MsG0480021357.01.T01 | AT2G37790 | 45.485 | 299 | 137 | 4 | 4 | 279 | 19 | 314 | 5.97e-86 | 259 |
| MsG0480021357.01.T01 | AT2G37770 | 45.000 | 300 | 138 | 5 | 4 | 279 | 19 | 315 | 2.31e-82 | 250 |
| MsG0480021357.01.T01 | AT3G53880 | 44.333 | 300 | 140 | 5 | 4 | 279 | 19 | 315 | 1.07e-79 | 244 |
| MsG0480021357.01.T01 | AT5G62420 | 42.053 | 302 | 145 | 6 | 6 | 279 | 17 | 316 | 1.15e-77 | 238 |
| MsG0480021357.01.T01 | AT2G37760 | 43.333 | 300 | 145 | 5 | 1 | 279 | 16 | 311 | 7.48e-76 | 234 |
| MsG0480021357.01.T01 | AT2G37760 | 43.333 | 300 | 145 | 5 | 1 | 279 | 16 | 311 | 7.48e-76 | 234 |
| MsG0480021357.01.T01 | AT3G53880 | 43.750 | 272 | 127 | 4 | 4 | 252 | 19 | 287 | 5.28e-69 | 216 |
| MsG0480021357.01.T01 | AT2G37760 | 43.066 | 274 | 132 | 4 | 1 | 254 | 16 | 285 | 2.03e-67 | 211 |
| MsG0480021357.01.T01 | AT2G37760 | 42.701 | 274 | 133 | 4 | 1 | 254 | 16 | 285 | 6.14e-67 | 210 |
| MsG0480021357.01.T01 | AT2G37760 | 42.701 | 274 | 133 | 4 | 1 | 254 | 16 | 285 | 6.14e-67 | 210 |
| MsG0480021357.01.T01 | AT2G37760 | 44.061 | 261 | 122 | 4 | 40 | 279 | 8 | 265 | 2.27e-65 | 205 |
| MsG0480021357.01.T01 | AT2G37760 | 44.061 | 261 | 122 | 4 | 40 | 279 | 8 | 265 | 2.27e-65 | 205 |
| MsG0480021357.01.T01 | AT5G01670 | 37.793 | 299 | 154 | 8 | 4 | 276 | 27 | 319 | 2.84e-62 | 199 |
| MsG0480021357.01.T01 | AT5G01670 | 34.663 | 326 | 154 | 8 | 4 | 276 | 27 | 346 | 4.45e-58 | 189 |
| MsG0480021357.01.T01 | AT2G21260 | 33.803 | 284 | 156 | 6 | 1 | 253 | 11 | 293 | 4.55e-54 | 178 |
| MsG0480021357.01.T01 | AT2G21250 | 34.831 | 267 | 145 | 5 | 14 | 252 | 27 | 292 | 1.17e-53 | 177 |
| MsG0480021357.01.T01 | AT2G37770 | 47.090 | 189 | 74 | 4 | 4 | 169 | 19 | 204 | 9.18e-49 | 163 |
| MsG0480021357.01.T01 | AT2G21260 | 33.500 | 200 | 123 | 3 | 64 | 253 | 26 | 225 | 1.14e-39 | 139 |
| MsG0480021357.01.T01 | AT2G21250 | 34.615 | 208 | 107 | 5 | 14 | 193 | 27 | 233 | 1.01e-36 | 130 |
| MsG0480021357.01.T01 | AT1G06690 | 24.088 | 274 | 160 | 9 | 20 | 250 | 94 | 362 | 1.36e-11 | 64.7 |
Find 63 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGATTCCCTTTGATATAAA+AGG | 0.194226 | 4:+57052394 | MsG0480021357.01.T01:CDS |
| GCATCTTGTTTCAAACTTAC+TGG | 0.245807 | 4:-57052343 | None:intergenic |
| ATGCTTGATGCCATTGAAAT+AGG | 0.262072 | 4:+57051994 | MsG0480021357.01.T01:CDS |
| TTTGATACTGCTGCTCTCTA+TGG | 0.286783 | 4:+57052027 | MsG0480021357.01.T01:CDS |
| TGAAAGGTTAAACTTTAAAA+AGG | 0.291121 | 4:+57052366 | MsG0480021357.01.T01:CDS |
| ATTAACTGCAGGAGCGATTT+CGG | 0.335579 | 4:-57052518 | None:intergenic |
| CAATGGGAATTGCCCCTTGC+TGG | 0.340720 | 4:-57053387 | None:intergenic |
| TCTGCAATTTCGCGCAGAAT+TGG | 0.343221 | 4:-57053005 | None:intergenic |
| AAAACATTGAAATATTTGAT+TGG | 0.366649 | 4:+57053440 | MsG0480021357.01.T01:CDS |
| GAAATGTTTGTATCTGATAA+TGG | 0.381759 | 4:+57053526 | MsG0480021357.01.T01:CDS |
| TCTATTGGTGTTAGCAACTT+TGG | 0.384780 | 4:+57052463 | MsG0480021357.01.T01:CDS |
| AATCGCTCCTGCAGTTAATC+AGG | 0.399261 | 4:+57052522 | MsG0480021357.01.T01:CDS |
| AAACATTGAAATATTTGATT+GGG | 0.403714 | 4:+57053441 | MsG0480021357.01.T01:CDS |
| TGGATCTCTATTTGATTCAC+TGG | 0.404097 | 4:+57052320 | MsG0480021357.01.T01:CDS |
| AGGAGGATACAAACTAAGTT+GGG | 0.405550 | 4:+57052959 | MsG0480021357.01.T01:CDS |
| TATGGAAGAATGTTATAGAT+TGG | 0.407357 | 4:+57052429 | MsG0480021357.01.T01:CDS |
| AAGATGGCAATGATAGGCTT+TGG | 0.418986 | 4:+57051943 | None:intergenic |
| AGTTTCCCTTGTTGCCATGA+TGG | 0.420449 | 4:-57052885 | None:intergenic |
| ATGGAAGAATGTTATAGATT+GGG | 0.461984 | 4:+57052430 | MsG0480021357.01.T01:CDS |
| GTTTCCCTTGTTGCCATGAT+GGG | 0.465312 | 4:-57052884 | None:intergenic |
| TCATCAAAGCAGATTTCAAA+AGG | 0.467054 | 4:+57053501 | MsG0480021357.01.T01:CDS |
| TAGAAAGAAGAGTGTAGCCC+AGG | 0.476626 | 4:+57053031 | MsG0480021357.01.T01:CDS |
| AAAAGGAACATGGGAAGCTA+TGG | 0.478713 | 4:+57052411 | MsG0480021357.01.T01:CDS |
| TAGGAGGATACAAACTAAGT+TGG | 0.494689 | 4:+57052958 | MsG0480021357.01.T01:CDS |
| CCTTTGATATAAAAGGAACA+TGG | 0.498973 | 4:+57052401 | MsG0480021357.01.T01:CDS |
| AAATCTTGGATTGGAGTATG+TGG | 0.502430 | 4:+57052300 | MsG0480021357.01.T01:CDS |
| GCAATGATAGGCTTTGGAAC+AGG | 0.505923 | 4:+57051949 | MsG0480021357.01.T01:CDS |
| TTGGGCCTAGCAAAGTCTAT+TGG | 0.512465 | 4:+57052448 | MsG0480021357.01.T01:CDS |
| TAACACCAATAGACTTTGCT+AGG | 0.512687 | 4:-57052453 | None:intergenic |
| GCCGTCCCACAGCTCTTCCA+AGG | 0.516692 | 4:-57053560 | None:intergenic |
| TTATGCAGATAGCACTAAGA+TGG | 0.518946 | 4:+57053359 | MsG0480021357.01.T01:intron |
| TCTTATACCTGATTAACTGC+AGG | 0.521626 | 4:-57052529 | None:intergenic |
| TAATGGACCTTACAAAACCT+TGG | 0.524158 | 4:+57053543 | MsG0480021357.01.T01:CDS |
| GTGTCAAAAGCTTTAGAGCT+AGG | 0.527948 | 4:+57052075 | MsG0480021357.01.T01:CDS |
| ATGTCTGTAGCCTATTTCAA+TGG | 0.534830 | 4:-57052004 | None:intergenic |
| TTGGGGTTCGCCTACCGTGA+TGG | 0.547041 | 4:+57052977 | MsG0480021357.01.T01:CDS |
| AGGTGGAAATGAACCCATCA+TGG | 0.568456 | 4:+57052871 | MsG0480021357.01.T01:intron |
| AGAGAGTTCTGCAAGCAGAA+AGG | 0.571100 | 4:+57052909 | MsG0480021357.01.T01:CDS |
| GTTTGAAACAAGATGCTGAA+AGG | 0.572758 | 4:+57052350 | MsG0480021357.01.T01:CDS |
| CAAAACCTTGGAAGAGCTGT+GGG | 0.578336 | 4:+57053555 | MsG0480021357.01.T01:CDS |
| TAAGATGGATATACCAGCAA+GGG | 0.578343 | 4:+57053374 | MsG0480021357.01.T01:CDS |
| GTGAGTGCATGGTCACCACT+AGG | 0.581102 | 4:+57052939 | MsG0480021357.01.T01:CDS |
| ATGAACCCATCATGGCAACA+AGG | 0.585669 | 4:+57052879 | MsG0480021357.01.T01:CDS |
| AAGGAATCCATGTGAGTGCA+TGG | 0.586898 | 4:+57052928 | MsG0480021357.01.T01:CDS |
| CTTTGATATAAAAGGAACAT+GGG | 0.591862 | 4:+57052402 | MsG0480021357.01.T01:CDS |
| TGAACCCATCATGGCAACAA+GGG | 0.594189 | 4:+57052880 | MsG0480021357.01.T01:CDS |
| TTTGACACAGCTTGGCCTAG+AGG | 0.596039 | 4:-57052060 | None:intergenic |
| GCATCAAGCATAACTTGTTG+AGG | 0.602208 | 4:-57051982 | None:intergenic |
| TGAAAAGCTTCAACAAGGAG+AGG | 0.604183 | 4:+57053410 | MsG0480021357.01.T01:CDS |
| ACCTTGGAAGAGCTGTGGGA+CGG | 0.612908 | 4:+57053559 | MsG0480021357.01.T01:CDS |
| ACAAAACCTTGGAAGAGCTG+TGG | 0.614469 | 4:+57053554 | MsG0480021357.01.T01:CDS |
| GTGGTGACCATGCACTCACA+TGG | 0.614668 | 4:-57052935 | None:intergenic |
| TCAAGCATAACTTGTTGAGG+AGG | 0.617877 | 4:-57051979 | None:intergenic |
| CTTAGTTTGTATCCTCCTAG+TGG | 0.625306 | 4:-57052954 | None:intergenic |
| TATGGAACTGAAGAACCTCT+AGG | 0.629164 | 4:+57052045 | MsG0480021357.01.T01:CDS |
| ATTGGATTCTCCATCACGGT+AGG | 0.633520 | 4:-57052987 | None:intergenic |
| CATTGTGAAAAGCTTCAACA+AGG | 0.641536 | 4:+57053405 | MsG0480021357.01.T01:CDS |
| AATTCTGCGCGAAATTGCAG+AGG | 0.665637 | 4:+57053007 | MsG0480021357.01.T01:CDS |
| GGAGGATACAAACTAAGTTG+GGG | 0.666842 | 4:+57052960 | MsG0480021357.01.T01:CDS |
| CTAAGATGGATATACCAGCA+AGG | 0.682956 | 4:+57053373 | MsG0480021357.01.T01:CDS |
| AGTGCATGGTCACCACTAGG+AGG | 0.692544 | 4:+57052942 | MsG0480021357.01.T01:CDS |
| AAGATGGATATACCAGCAAG+GGG | 0.693926 | 4:+57053375 | MsG0480021357.01.T01:CDS |
| CAGAATTGGATTCTCCATCA+CGG | 0.696091 | 4:-57052991 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACATTGAAATATTTGAT+TGG | + | Chr4:57053440-57053459 | MsG0480021357.01.T01:CDS | 15.0% |
| !! | AAACATTGAAATATTTGATT+GGG | + | Chr4:57053441-57053460 | MsG0480021357.01.T01:CDS | 15.0% |
| !! | AAAGAATGAGAATAAATTAT+TGG | - | Chr4:57052705-57052724 | None:intergenic | 15.0% |
| !!! | AACCTTATCAAAATTTTAAT+TGG | - | Chr4:57053088-57053107 | None:intergenic | 15.0% |
| !!! | ATATTATTGTTTTGGTTTTT+CGG | + | Chr4:57052262-57052281 | MsG0480021357.01.T01:intron | 15.0% |
| !!! | TTGATATTTTTTAGAAATCT+TGG | + | Chr4:57052286-57052305 | MsG0480021357.01.T01:intron | 15.0% |
| !!! | TTTTGTTACATATTCTTATT+TGG | + | Chr4:57052844-57052863 | MsG0480021357.01.T01:intron | 15.0% |
| !! | AAAGCTGAATTATAAAACAA+AGG | - | Chr4:57053125-57053144 | None:intergenic | 20.0% |
| !! | AAGCTGAATTATAAAACAAA+GGG | - | Chr4:57053124-57053143 | None:intergenic | 20.0% |
| !! | ATAGATTCAATACACTTAAT+TGG | + | Chr4:57052586-57052605 | MsG0480021357.01.T01:intron | 20.0% |
| !! | TCATGATGTGATATTATATT+AGG | - | Chr4:57053188-57053207 | None:intergenic | 20.0% |
| !!! | ACATATTCTTATTTGGATTT+AGG | + | Chr4:57052851-57052870 | MsG0480021357.01.T01:intron | 20.0% |
| !!! | AGCCAATTAAAATTTTGATA+AGG | + | Chr4:57053083-57053102 | MsG0480021357.01.T01:intron | 20.0% |
| !!! | ATTCAGCTTTTTTTTTTCAA+TGG | + | Chr4:57053135-57053154 | MsG0480021357.01.T01:intron | 20.0% |
| !!! | ATTTTTTAGAAATCTTGGAT+TGG | + | Chr4:57052291-57052310 | MsG0480021357.01.T01:intron | 20.0% |
| !!! | CTTGTCTAATATTATTGTTT+TGG | + | Chr4:57052254-57052273 | MsG0480021357.01.T01:intron | 20.0% |
| !!! | TGAAAGGTTAAACTTTAAAA+AGG | + | Chr4:57052366-57052385 | MsG0480021357.01.T01:CDS | 20.0% |
| ! | ATATCTAGATAACAATTGTG+TGG | - | Chr4:57052787-57052806 | None:intergenic | 25.0% |
| ! | ATGATTCCCTTTGATATAAA+AGG | + | Chr4:57052394-57052413 | MsG0480021357.01.T01:CDS | 25.0% |
| ! | ATGGAAGAATGTTATAGATT+GGG | + | Chr4:57052430-57052449 | MsG0480021357.01.T01:CDS | 25.0% |
| ! | CTTTGATATAAAAGGAACAT+GGG | + | Chr4:57052402-57052421 | MsG0480021357.01.T01:CDS | 25.0% |
| ! | GAAATGTTTGTATCTGATAA+TGG | + | Chr4:57053526-57053545 | MsG0480021357.01.T01:CDS | 25.0% |
| ! | TATGGAAGAATGTTATAGAT+TGG | + | Chr4:57052429-57052448 | MsG0480021357.01.T01:CDS | 25.0% |
| ! | TATTGGATACTATTTGCATA+GGG | - | Chr4:57052688-57052707 | None:intergenic | 25.0% |
| ! | TTATTGGATACTATTTGCAT+AGG | - | Chr4:57052689-57052708 | None:intergenic | 25.0% |
| !! | AAGGTTAAACTTTAAAAAGG+AGG | + | Chr4:57052369-57052388 | MsG0480021357.01.T01:CDS | 25.0% |
| !! | CATGTTCCTTTTATATCAAA+GGG | - | Chr4:57052403-57052422 | None:intergenic | 25.0% |
| !! | TATTCTTATTTGGATTTAGG+TGG | + | Chr4:57052854-57052873 | MsG0480021357.01.T01:intron | 25.0% |
| !!! | TTTCGATTTTGAAGTAACTT+AGG | - | Chr4:57052615-57052634 | None:intergenic | 25.0% |
| ATAACAATTGTGTGGTTAGT+CGG | - | Chr4:57052779-57052798 | None:intergenic | 30.0% | |
| CCTTTGATATAAAAGGAACA+TGG | + | Chr4:57052401-57052420 | MsG0480021357.01.T01:CDS | 30.0% | |
| CTTCAAAACCTTAGATTGTT+AGG | + | Chr4:57053215-57053234 | MsG0480021357.01.T01:intron | 30.0% | |
| GTTAGGTGAGAACAAATAAT+TGG | + | Chr4:57053232-57053251 | MsG0480021357.01.T01:intron | 30.0% | |
| TCATCAAAGCAGATTTCAAA+AGG | + | Chr4:57053501-57053520 | MsG0480021357.01.T01:CDS | 30.0% | |
| TGTTCATTACTTCCAAGTTA+TGG | + | Chr4:57052121-57052140 | MsG0480021357.01.T01:intron | 30.0% | |
| ! | CCATGTTCCTTTTATATCAA+AGG | - | Chr4:57052404-57052423 | None:intergenic | 30.0% |
| ! | TTGTTGAAGCTTTTCACAAT+GGG | - | Chr4:57053406-57053425 | None:intergenic | 30.0% |
| !!! | AATCTAAGGTTTTGAAGAGT+TGG | - | Chr4:57053212-57053231 | None:intergenic | 30.0% |
| AAATTATGCTTGCTTCAGAG+TGG | - | Chr4:57052190-57052209 | None:intergenic | 35.0% | |
| AGGAGGATACAAACTAAGTT+GGG | + | Chr4:57052959-57052978 | MsG0480021357.01.T01:CDS | 35.0% | |
| ATAAAATAATGAGCTGCACC+TGG | - | Chr4:57053052-57053071 | None:intergenic | 35.0% | |
| ATGCTTGATGCCATTGAAAT+AGG | + | Chr4:57051994-57052013 | MsG0480021357.01.T01:CDS | 35.0% | |
| ATGTCTGTAGCCTATTTCAA+TGG | - | Chr4:57052007-57052026 | None:intergenic | 35.0% | |
| CAATGGTCAAACTTTAGACT+TGG | + | Chr4:57053152-57053171 | MsG0480021357.01.T01:intron | 35.0% | |
| CATTGTGAAAAGCTTCAACA+AGG | + | Chr4:57053405-57053424 | MsG0480021357.01.T01:CDS | 35.0% | |
| TAAAATAATGAGCTGCACCT+GGG | - | Chr4:57053051-57053070 | None:intergenic | 35.0% | |
| TAACACCAATAGACTTTGCT+AGG | - | Chr4:57052456-57052475 | None:intergenic | 35.0% | |
| TAAGATGGATATACCAGCAA+GGG | + | Chr4:57053374-57053393 | MsG0480021357.01.T01:CDS | 35.0% | |
| TAGGAGGATACAAACTAAGT+TGG | + | Chr4:57052958-57052977 | MsG0480021357.01.T01:CDS | 35.0% | |
| TCTTATACCTGATTAACTGC+AGG | - | Chr4:57052532-57052551 | None:intergenic | 35.0% | |
| TGGATCTCTATTTGATTCAC+TGG | + | Chr4:57052320-57052339 | MsG0480021357.01.T01:CDS | 35.0% | |
| TGTCTGACATGTATCAGTAT+CGG | - | Chr4:57052662-57052681 | None:intergenic | 35.0% | |
| TGTTCTCACCTAACAATCTA+AGG | - | Chr4:57053226-57053245 | None:intergenic | 35.0% | |
| TTATGCAGATAGCACTAAGA+TGG | + | Chr4:57053359-57053378 | MsG0480021357.01.T01:intron | 35.0% | |
| ! | AAATCTTGGATTGGAGTATG+TGG | + | Chr4:57052300-57052319 | MsG0480021357.01.T01:CDS | 35.0% |
| ! | CTTGTTGAAGCTTTTCACAA+TGG | - | Chr4:57053407-57053426 | None:intergenic | 35.0% |
| ! | GCATCTTGTTTCAAACTTAC+TGG | - | Chr4:57052346-57052365 | None:intergenic | 35.0% |
| ! | GTTTGAAACAAGATGCTGAA+AGG | + | Chr4:57052350-57052369 | MsG0480021357.01.T01:CDS | 35.0% |
| ! | TAATGGACCTTACAAAACCT+TGG | + | Chr4:57053543-57053562 | MsG0480021357.01.T01:CDS | 35.0% |
| !! | ATGTATTCGAGAAGTATCAG+TGG | - | Chr4:57052740-57052759 | None:intergenic | 35.0% |
| !! | TCTATTGGTGTTAGCAACTT+TGG | + | Chr4:57052463-57052482 | MsG0480021357.01.T01:CDS | 35.0% |
| !! | TTCGGCATTTTCTAAGAGTA+TGG | - | Chr4:57052503-57052522 | None:intergenic | 35.0% |
| AAAAGGAACATGGGAAGCTA+TGG | + | Chr4:57052411-57052430 | MsG0480021357.01.T01:CDS | 40.0% | |
| AAGATGGATATACCAGCAAG+GGG | + | Chr4:57053375-57053394 | MsG0480021357.01.T01:CDS | 40.0% | |
| AGCATCAGTACACCATAACT+TGG | - | Chr4:57052136-57052155 | None:intergenic | 40.0% | |
| ATTAACTGCAGGAGCGATTT+CGG | - | Chr4:57052521-57052540 | None:intergenic | 40.0% | |
| CAGAATTGGATTCTCCATCA+CGG | - | Chr4:57052994-57053013 | None:intergenic | 40.0% | |
| CTAAGATGGATATACCAGCA+AGG | + | Chr4:57053373-57053392 | MsG0480021357.01.T01:CDS | 40.0% | |
| GGAGGATACAAACTAAGTTG+GGG | + | Chr4:57052960-57052979 | MsG0480021357.01.T01:CDS | 40.0% | |
| TATGGAACTGAAGAACCTCT+AGG | + | Chr4:57052045-57052064 | MsG0480021357.01.T01:CDS | 40.0% | |
| TGAAAAGCTTCAACAAGGAG+AGG | + | Chr4:57053410-57053429 | MsG0480021357.01.T01:CDS | 40.0% | |
| TTTGATACTGCTGCTCTCTA+TGG | + | Chr4:57052027-57052046 | MsG0480021357.01.T01:CDS | 40.0% | |
| ! | CTAAAGCTTTTGACACAGCT+TGG | - | Chr4:57052071-57052090 | None:intergenic | 40.0% |
| ! | GTTCATCGCGATTTTTAACG+AGG | - | Chr4:57052101-57052120 | None:intergenic | 40.0% |
| !! | AGCTCTTCCAAGGTTTTGTA+AGG | - | Chr4:57053553-57053572 | None:intergenic | 40.0% |
| !! | CTTAGTTTGTATCCTCCTAG+TGG | - | Chr4:57052957-57052976 | None:intergenic | 40.0% |
| !! | GCATCAAGCATAACTTGTTG+AGG | - | Chr4:57051985-57052004 | None:intergenic | 40.0% |
| !! | GTGTCAAAAGCTTTAGAGCT+AGG | + | Chr4:57052075-57052094 | MsG0480021357.01.T01:CDS | 40.0% |
| !! | TCAAGCATAACTTGTTGAGG+AGG | - | Chr4:57051982-57052001 | None:intergenic | 40.0% |
| AAGGAATCCATGTGAGTGCA+TGG | + | Chr4:57052928-57052947 | MsG0480021357.01.T01:CDS | 45.0% | |
| AATCGCTCCTGCAGTTAATC+AGG | + | Chr4:57052522-57052541 | MsG0480021357.01.T01:CDS | 45.0% | |
| AATTCTGCGCGAAATTGCAG+AGG | + | Chr4:57053007-57053026 | MsG0480021357.01.T01:CDS | 45.0% | |
| ACAAAACCTTGGAAGAGCTG+TGG | + | Chr4:57053554-57053573 | MsG0480021357.01.T01:CDS | 45.0% | |
| AGAGAGTTCTGCAAGCAGAA+AGG | + | Chr4:57052909-57052928 | MsG0480021357.01.T01:CDS | 45.0% | |
| AGGTGGAAATGAACCCATCA+TGG | + | Chr4:57052871-57052890 | MsG0480021357.01.T01:intron | 45.0% | |
| AGTTTCCCTTGTTGCCATGA+TGG | - | Chr4:57052888-57052907 | None:intergenic | 45.0% | |
| ATGAACCCATCATGGCAACA+AGG | + | Chr4:57052879-57052898 | MsG0480021357.01.T01:CDS | 45.0% | |
| ATTGGATTCTCCATCACGGT+AGG | - | Chr4:57052990-57053009 | None:intergenic | 45.0% | |
| CAAAACCTTGGAAGAGCTGT+GGG | + | Chr4:57053555-57053574 | MsG0480021357.01.T01:CDS | 45.0% | |
| GTTTCCCTTGTTGCCATGAT+GGG | - | Chr4:57052887-57052906 | None:intergenic | 45.0% | |
| TCTGCAATTTCGCGCAGAAT+TGG | - | Chr4:57053008-57053027 | None:intergenic | 45.0% | |
| TGAACCCATCATGGCAACAA+GGG | + | Chr4:57052880-57052899 | MsG0480021357.01.T01:CDS | 45.0% | |
| TTGGGCCTAGCAAAGTCTAT+TGG | + | Chr4:57052448-57052467 | MsG0480021357.01.T01:CDS | 45.0% | |
| ! | TAGAAAGAAGAGTGTAGCCC+AGG | + | Chr4:57053031-57053050 | MsG0480021357.01.T01:CDS | 45.0% |
| !! | GCAATGATAGGCTTTGGAAC+AGG | + | Chr4:57051949-57051968 | MsG0480021357.01.T01:CDS | 45.0% |
| !! | TTTTGAGAGCTGGGAGAACA+AGG | - | Chr4:57052167-57052186 | None:intergenic | 45.0% |
| !!! | TCAGAGTGGTTTTGAGAGCT+GGG | - | Chr4:57052176-57052195 | None:intergenic | 45.0% |
| !!! | TTCAGAGTGGTTTTGAGAGC+TGG | - | Chr4:57052177-57052196 | None:intergenic | 45.0% |
| TTTGACACAGCTTGGCCTAG+AGG | - | Chr4:57052063-57052082 | None:intergenic | 50.0% | |
| ACCTTGGAAGAGCTGTGGGA+CGG | + | Chr4:57053559-57053578 | MsG0480021357.01.T01:CDS | 55.0% | |
| AGTGCATGGTCACCACTAGG+AGG | + | Chr4:57052942-57052961 | MsG0480021357.01.T01:CDS | 55.0% | |
| CAATGGGAATTGCCCCTTGC+TGG | - | Chr4:57053390-57053409 | None:intergenic | 55.0% | |
| GTGAGTGCATGGTCACCACT+AGG | + | Chr4:57052939-57052958 | MsG0480021357.01.T01:CDS | 55.0% | |
| GTGGTGACCATGCACTCACA+TGG | - | Chr4:57052938-57052957 | None:intergenic | 55.0% | |
| TTGGGGTTCGCCTACCGTGA+TGG | + | Chr4:57052977-57052996 | MsG0480021357.01.T01:CDS | 60.0% | |
| GCCGTCCCACAGCTCTTCCA+AGG | - | Chr4:57053563-57053582 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 57051946 | 57053591 | 57051946 | ID=MsG0480021357.01;Name=MsG0480021357.01 |
| Chr4 | mRNA | 57051946 | 57053591 | 57051946 | ID=MsG0480021357.01.T01;Parent=MsG0480021357.01;Name=MsG0480021357.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|4|0|279 |
| Chr4 | exon | 57051946 | 57052136 | 57051946 | ID=MsG0480021357.01.T01:exon:7147;Parent=MsG0480021357.01.T01 |
| Chr4 | exon | 57052300 | 57052543 | 57052300 | ID=MsG0480021357.01.T01:exon:7148;Parent=MsG0480021357.01.T01 |
| Chr4 | exon | 57052873 | 57053052 | 57052873 | ID=MsG0480021357.01.T01:exon:7149;Parent=MsG0480021357.01.T01 |
| Chr4 | exon | 57053367 | 57053591 | 57053367 | ID=MsG0480021357.01.T01:exon:7150;Parent=MsG0480021357.01.T01 |
| Chr4 | CDS | 57051946 | 57052136 | 57051946 | ID=MsG0480021357.01.T01:cds;Parent=MsG0480021357.01.T01 |
| Chr4 | CDS | 57052300 | 57052543 | 57052300 | ID=MsG0480021357.01.T01:cds;Parent=MsG0480021357.01.T01 |
| Chr4 | CDS | 57052873 | 57053052 | 57052873 | ID=MsG0480021357.01.T01:cds;Parent=MsG0480021357.01.T01 |
| Chr4 | CDS | 57053367 | 57053591 | 57053367 | ID=MsG0480021357.01.T01:cds;Parent=MsG0480021357.01.T01 |
| Gene Sequence |
| Protein sequence |
