AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780039304.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039304.01.T01 MTR_7g070500 97.508 321 8 0 1 321 1 321 0.0 655
MsG0780039304.01.T01 MTR_7g070500 97.260 292 8 0 1 292 1 292 0.0 595
MsG0780039304.01.T01 MTR_8g070095 45.223 314 161 7 15 320 8 318 5.67e-88 266
MsG0780039304.01.T01 MTR_8g070115 44.268 314 168 5 11 320 4 314 4.61e-84 256
MsG0780039304.01.T01 MTR_7g063580 45.307 309 163 5 15 320 48 353 7.27e-84 257
MsG0780039304.01.T01 MTR_4g021350 44.516 310 167 5 13 320 6 312 1.60e-81 250
MsG0780039304.01.T01 MTR_4g072320 40.584 308 171 6 17 318 11 312 3.24e-77 239
MsG0780039304.01.T01 MTR_4g072350 40.514 311 173 7 17 318 11 318 1.28e-75 235
MsG0780039304.01.T01 MTR_4g072360 39.228 311 177 6 17 318 11 318 1.74e-74 232
MsG0780039304.01.T01 MTR_4g021350 45.520 279 149 3 13 289 6 283 4.28e-74 230
MsG0780039304.01.T01 MTR_6g073110 37.299 311 183 6 17 318 11 318 1.14e-71 225
MsG0780039304.01.T01 MTR_4g021410 40.000 310 168 6 15 320 9 304 9.83e-71 222
MsG0780039304.01.T01 MTR_3g083130 38.188 309 166 8 23 320 21 315 1.35e-69 219
MsG0780039304.01.T01 MTR_0374s0050 38.961 308 168 6 22 320 19 315 1.53e-69 219
MsG0780039304.01.T01 MTR_4g021450 40.000 310 168 6 15 320 9 304 9.61e-69 217
MsG0780039304.01.T01 MTR_4g036845 37.621 311 183 7 17 320 8 314 4.56e-68 215
MsG0780039304.01.T01 MTR_4g021410 40.357 280 149 6 45 320 2 267 4.81e-62 198
MsG0780039304.01.T01 MTR_5g097900 38.869 283 164 6 23 298 20 300 5.13e-60 194
MsG0780039304.01.T01 MTR_5g097910 38.869 283 164 6 23 298 20 300 5.24e-60 194
MsG0780039304.01.T01 MTR_5g097940 38.869 283 164 6 23 298 20 300 5.24e-60 194
MsG0780039304.01.T01 MTR_4g072060 38.047 297 167 6 14 295 2 296 8.64e-53 176
MsG0780039304.01.T01 MTR_4g021410 40.083 242 128 5 82 320 1 228 5.24e-51 169
MsG0780039304.01.T01 MTR_4g021450 40.083 242 128 5 82 320 1 228 3.35e-49 164
MsG0780039304.01.T01 MTR_4g021450 37.368 190 110 4 134 320 2 185 6.83e-43 146
MsG0780039304.01.T01 MTR_6g072650 35.570 149 74 3 170 318 8 134 1.01e-23 94.7
MsG0780039304.01.T01 MTR_6g072710 34.545 110 69 1 190 296 1 110 2.92e-19 82.0
MsG0780039304.01.T01 MTR_3g092140 23.343 347 194 10 22 314 45 373 2.95e-14 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039304.01.T01 AT5G01670 74.434 309 79 0 13 321 14 322 0.0 509
MsG0780039304.01.T01 AT5G01670 68.452 336 79 1 13 321 14 349 1.14e-177 495
MsG0780039304.01.T01 AT2G37770 44.839 310 164 5 15 320 8 314 1.65e-90 273
MsG0780039304.01.T01 AT3G53880 43.226 310 169 5 15 320 8 314 1.08e-84 258
MsG0780039304.01.T01 AT2G37790 42.308 312 172 6 13 320 6 313 1.23e-83 255
MsG0780039304.01.T01 AT2G37760 40.968 310 172 5 15 320 8 310 1.67e-81 249
MsG0780039304.01.T01 AT2G37760 40.968 310 172 5 15 320 8 310 1.67e-81 249
MsG0780039304.01.T01 AT2G37760 42.657 286 155 4 15 296 8 288 9.92e-78 239
MsG0780039304.01.T01 AT3G53880 44.086 279 151 3 15 289 8 285 2.71e-77 239
MsG0780039304.01.T01 AT2G37760 42.657 286 154 5 15 296 8 287 4.14e-76 235
MsG0780039304.01.T01 AT2G37760 42.657 286 154 5 15 296 8 287 4.14e-76 235
MsG0780039304.01.T01 AT5G62420 40.575 313 172 9 17 320 8 315 5.05e-70 221
MsG0780039304.01.T01 AT2G37760 40.530 264 150 4 61 320 4 264 3.84e-67 211
MsG0780039304.01.T01 AT2G37760 40.530 264 150 4 61 320 4 264 3.84e-67 211
MsG0780039304.01.T01 AT1G59960 37.864 309 181 6 21 320 19 325 5.56e-67 213
MsG0780039304.01.T01 AT1G59950 38.511 309 179 5 21 320 13 319 1.53e-60 196
MsG0780039304.01.T01 AT2G21250 37.543 293 166 6 17 294 5 295 1.84e-60 196
MsG0780039304.01.T01 AT2G21260 35.836 293 171 5 17 294 5 295 6.18e-59 192
MsG0780039304.01.T01 AT2G37770 44.949 198 107 2 15 211 8 204 3.76e-54 179
MsG0780039304.01.T01 AT2G21250 39.904 208 114 5 19 217 7 212 1.14e-43 150
MsG0780039304.01.T01 AT2G21260 32.883 222 133 4 87 294 8 227 1.76e-36 131
MsG0780039304.01.T01 AT5G53580 23.642 313 171 10 22 282 46 342 1.10e-11 65.5

Find 103 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATTCTCTTTGATCCTATT+TGG 0.089316 7:-61726763 None:intergenic
AGGGCAGGTCTTACCCTTTC+AGG 0.145363 7:-61725521 None:intergenic
TGGACTCTTGTTCAGCTTCT+TGG 0.168612 7:-61726677 None:intergenic
AGTGAAGTTGGAGTTCTTTA+AGG 0.169776 7:-61725553 None:intergenic
CCTATTTGGGTTGGTTGATT+TGG 0.225383 7:-61726749 None:intergenic
CTATTTGGGTTGGTTGATTT+GGG 0.259553 7:-61726748 None:intergenic
TCAAGAGTGTAGAAGATATC+TGG 0.262803 7:+61727362 MsG0780039304.01.T01:CDS
CATTCTCTTTGATCCTATTT+GGG 0.266309 7:-61726762 None:intergenic
GTGTTGTTGCTTAATCTTCA+TGG 0.274478 7:-61727387 None:intergenic
AGATCAAATGACTTTGTCTT+TGG 0.288471 7:-61724566 None:intergenic
CCAAATCAACCAACCCAAAT+AGG 0.299048 7:+61726749 MsG0780039304.01.T01:CDS
CAACTTCACTCTTACTAAAC+TGG 0.334317 7:+61725822 MsG0780039304.01.T01:CDS
AGAATGTGGTTGTCTTCAAT+TGG 0.337034 7:+61726779 MsG0780039304.01.T01:CDS
AGTTCGACATGGAAGGAGTT+TGG 0.346004 7:+61725746 MsG0780039304.01.T01:CDS
ATTGACACTGCTGCTCAATA+TGG 0.348186 7:+61724814 MsG0780039304.01.T01:CDS
AAAGATCAAGGTAGTGAAGT+TGG 0.360588 7:-61725565 None:intergenic
TCCGACACTTCTCCTGCTTT+AGG 0.363470 7:-61725724 None:intergenic
CTCTTTGATCCTATTTGGGT+TGG 0.366959 7:-61726758 None:intergenic
GGATTAGGCACATGGAAATC+TGG 0.369663 7:+61724617 MsG0780039304.01.T01:CDS
GAATGACACTTGTCCCTCTC+TGG 0.371417 7:-61726726 None:intergenic
AGTTTGTTGAAATCATTATC+TGG 0.383429 7:-61726808 None:intergenic
GGGCAGGTCTTACCCTTTCA+GGG 0.397531 7:-61725520 None:intergenic
GCCCCATCTTCCAATTGAAA+TGG 0.414587 7:-61725691 None:intergenic
GATTCACTGGCCATTTCAAT+TGG 0.416702 7:+61725681 MsG0780039304.01.T01:intron
GTGAAGTTGGAGTTCTTTAA+GGG 0.418206 7:-61725552 None:intergenic
TGATAGATGGAGATGCATCC+TGG 0.418211 7:+61726269 MsG0780039304.01.T01:intron
GGAAGGAGTTTGGAGAGAAA+TGG 0.418801 7:+61725756 MsG0780039304.01.T01:CDS
CCTTTCCACTCCAGCTTGCA+TGG 0.437876 7:-61725349 None:intergenic
TCACTACCTTGATCTTTACT+TGG 0.439773 7:+61725571 MsG0780039304.01.T01:CDS
GACTTTGTCTTTGGTTCATG+TGG 0.440898 7:-61724557 None:intergenic
CACTTCACCAACACTTGCCC+TGG 0.442979 7:-61726697 None:intergenic
GGACATAGCATACCTGCTAT+TGG 0.445028 7:+61724596 MsG0780039304.01.T01:CDS
GGCCATTTCAATTGGAAGAT+GGG 0.461430 7:+61725689 MsG0780039304.01.T01:CDS
TGGCCATTTCAATTGGAAGA+TGG 0.461510 7:+61725688 MsG0780039304.01.T01:CDS
TCCTATCAACCGTTTGATCA+TGG 0.465441 7:-61726651 None:intergenic
GAAAATCTTGTTAGAGACAT+TGG 0.467373 7:+61725793 MsG0780039304.01.T01:CDS
TCCATGATCAAACGGTTGAT+AGG 0.467631 7:+61726650 MsG0780039304.01.T01:CDS
GTTTCATTATTACCATAGCT+TGG 0.468239 7:-61725391 None:intergenic
TTACTATGACCTACCTGATC+TGG 0.469191 7:-61726841 None:intergenic
GAATGTGGTTGTCTTCAATT+GGG 0.471794 7:+61726780 MsG0780039304.01.T01:CDS
CTTCAATCTGCCATGCAAGC+TGG 0.474223 7:+61725339 MsG0780039304.01.T01:CDS
GGCTGTGAAGACAGAATTGA+TGG 0.476481 7:-61724648 None:intergenic
TTCTTTAAGGGTATTGTTGA+GGG 0.477858 7:-61725540 None:intergenic
ACTTAGCAAAATACCAGATC+AGG 0.492376 7:+61726828 MsG0780039304.01.T01:CDS
AGTTATGCCTTCTGTATGCC+AGG 0.498861 7:+61725867 MsG0780039304.01.T01:CDS
GCAAGCAGGCCTCCTAAAGC+AGG 0.500088 7:+61725712 MsG0780039304.01.T01:CDS
GACACTTGTCCCTCTCTGGA+TGG 0.503528 7:-61726722 None:intergenic
AAGAAGCTGAACAAGAGTCC+AGG 0.507422 7:+61726679 MsG0780039304.01.T01:CDS
TTAAGGGTATTGTTGAGGGC+AGG 0.512973 7:-61725536 None:intergenic
CAGGGCAAGTGTTGGTGAAG+TGG 0.517026 7:+61726698 MsG0780039304.01.T01:CDS
AGGGCAAGTGTTGGTGAAGT+GGG 0.517223 7:+61726699 MsG0780039304.01.T01:CDS
ATCTGCCATGCAAGCTGGAG+TGG 0.520281 7:+61725344 MsG0780039304.01.T01:CDS
GTTCTTTAAGGGTATTGTTG+AGG 0.521886 7:-61725541 None:intergenic
CTCGAGGCTTGCAAGAAGAA+TGG 0.522910 7:+61726311 MsG0780039304.01.T01:CDS
CAAGAGTGTAGAAGATATCT+GGG 0.524323 7:+61727363 MsG0780039304.01.T01:CDS
CACTGACTTGACCCCTGAAA+GGG 0.529708 7:+61725508 MsG0780039304.01.T01:CDS
ATATCTTCTACACTCTTGAA+TGG 0.532612 7:-61727358 None:intergenic
CTGCTATTGGATTAGGCACA+TGG 0.534022 7:+61724609 MsG0780039304.01.T01:CDS
CACATGGAAATCTGGTTCAC+AGG 0.536667 7:+61724625 MsG0780039304.01.T01:CDS
GCCATTTCAATTGGAAGATG+GGG 0.540454 7:+61725690 MsG0780039304.01.T01:CDS
ATACATGCAGAGGAGAGTCT+TGG 0.543034 7:+61727300 MsG0780039304.01.T01:intron
TATTCATCACCTCCAAGCTA+TGG 0.544034 7:+61725379 MsG0780039304.01.T01:CDS
AGATCTCATCCATGATCAAA+CGG 0.545033 7:+61726642 MsG0780039304.01.T01:CDS
ATCTAGGCCTACTCACCACT+TGG 0.546128 7:+61726601 MsG0780039304.01.T01:intron
AGCATACCTGCTATTGGATT+AGG 0.546580 7:+61724602 MsG0780039304.01.T01:CDS
AATTGGAAGATGGGGCAAGC+AGG 0.547430 7:+61725698 MsG0780039304.01.T01:CDS
CATGTGCCTAATCCAATAGC+AGG 0.547561 7:-61724608 None:intergenic
CACTTGGATCACAAGATGGT+GGG 0.551885 7:+61726617 MsG0780039304.01.T01:CDS
GACACTTCTCCTGCTTTAGG+AGG 0.559526 7:-61725721 None:intergenic
CTCTTTGTGAACAAGAGTGA+AGG 0.563000 7:+61727334 MsG0780039304.01.T01:CDS
TTGTGATCCAAGTGGTGAGT+AGG 0.568126 7:-61726608 None:intergenic
TAATTACCAAGTAAAGATCA+AGG 0.571419 7:-61725577 None:intergenic
GGCAGGTCTTACCCTTTCAG+GGG 0.574124 7:-61725519 None:intergenic
TCATTATTACCATAGCTTGG+AGG 0.574413 7:-61725388 None:intergenic
ATCTTATCATTTCTCCACCC+AGG 0.577692 7:-61726287 None:intergenic
GCACTGACTTGACCCCTGAA+AGG 0.579210 7:+61725507 MsG0780039304.01.T01:CDS
TCACCACTTGGATCACAAGA+TGG 0.581373 7:+61726613 MsG0780039304.01.T01:CDS
GTGTCGGAGTTCGACATGGA+AGG 0.582662 7:+61725739 MsG0780039304.01.T01:CDS
CTTCACTCTTGTTCACAAAG+AGG 0.584164 7:-61727333 None:intergenic
TGAATGTGATGCAGATTCAC+TGG 0.585688 7:+61725668 MsG0780039304.01.T01:intron
TTATGTAAATTACCGTGACA+TGG 0.586984 7:-61726337 None:intergenic
TCCTAAAGCAGGAGAAGTGT+CGG 0.588577 7:+61725723 MsG0780039304.01.T01:CDS
AAGTCATTTGATCTATTGAG+TGG 0.594462 7:+61724575 MsG0780039304.01.T01:CDS
CCATGCAAGCTGGAGTGGAA+AGG 0.595407 7:+61725349 MsG0780039304.01.T01:CDS
GCAAGCTGGAGTGGAAAGGA+AGG 0.596900 7:+61725353 MsG0780039304.01.T01:CDS
GTGAAGTGGGCCATCCAGAG+AGG 0.598428 7:+61726712 MsG0780039304.01.T01:CDS
TGTCTTCACAGCCATTGTTG+AGG 0.607802 7:+61724658 MsG0780039304.01.T01:CDS
AAATAGGATCAAAGAGAATG+TGG 0.610632 7:+61726765 MsG0780039304.01.T01:CDS
CAAGAGTCCAGGGCAAGTGT+TGG 0.612547 7:+61726690 MsG0780039304.01.T01:CDS
TACATTAGTTACCTCAACAA+TGG 0.614186 7:-61724669 None:intergenic
CCACTTGGATCACAAGATGG+TGG 0.614513 7:+61726616 MsG0780039304.01.T01:CDS
AGAAGCTGAACAAGAGTCCA+GGG 0.616824 7:+61726680 MsG0780039304.01.T01:CDS
AGAAGTGTCGGAGTTCGACA+TGG 0.616872 7:+61725735 MsG0780039304.01.T01:CDS
GATAGATGGAGATGCATCCT+GGG 0.616882 7:+61726270 MsG0780039304.01.T01:intron
GAAGAATGGCATCCATGTCA+CGG 0.626497 7:+61726325 MsG0780039304.01.T01:CDS
TCTTTGTGAACAAGAGTGAA+GGG 0.629454 7:+61727335 MsG0780039304.01.T01:CDS
TGAAGTGGGCCATCCAGAGA+GGG 0.636239 7:+61726713 MsG0780039304.01.T01:CDS
AGAAATGGAGAAGCTTGTCA+AGG 0.657989 7:+61725771 MsG0780039304.01.T01:CDS
CCACCATCTTGTGATCCAAG+TGG 0.660818 7:-61726616 None:intergenic
TCAATATGGAGTTCAAGAAG+AGG 0.670116 7:+61724828 MsG0780039304.01.T01:CDS
ATGCAGAGGAGAGTCTTGGA+TGG 0.680823 7:+61727304 MsG0780039304.01.T01:intron
GAGAAATGATAAGATGCTCG+AGG 0.690115 7:+61726295 MsG0780039304.01.T01:CDS
AGATGGAGATGCATCCTGGG+TGG 0.703215 7:+61726273 MsG0780039304.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATCTTATAACTAGTA+CGG - Chr7:61726046-61726065 None:intergenic 15.0%
!! AATTAATCAATAGATTATGT+CGG - Chr7:61725270-61725289 None:intergenic 15.0%
!! TAAAGATCTATTTATCAATT+CGG - Chr7:61726945-61726964 None:intergenic 15.0%
!!! ACATAAAGGTTTTAAATAAA+GGG + Chr7:61726354-61726373 MsG0780039304.01.T01:intron 15.0%
!!! AGAATATATATAATTTTACC+TGG - Chr7:61725888-61725907 None:intergenic 15.0%
!!! ATTTTCTTCATTTGTTTATA+TGG + Chr7:61726534-61726553 MsG0780039304.01.T01:intron 15.0%
!!! TACATAAAGGTTTTAAATAA+AGG + Chr7:61726353-61726372 MsG0780039304.01.T01:intron 15.0%
!! ACAAATTTGTCAGTAATTAT+TGG + Chr7:61727114-61727133 MsG0780039304.01.T01:intron 20.0%
!! ATCTCTTTATATGAAACTAA+TGG - Chr7:61724967-61724986 None:intergenic 20.0%
!! CAAATGAAGAAAATCAAATT+AGG - Chr7:61726528-61726547 None:intergenic 20.0%
!! GAAAGAAGTAGAAAAAAAAA+AGG - Chr7:61725640-61725659 None:intergenic 20.0%
!! GATGATTCAATTGAATTTAT+TGG + Chr7:61725456-61725475 MsG0780039304.01.T01:intron 20.0%
!! TCTCTTTATATGAAACTAAT+GGG - Chr7:61724966-61724985 None:intergenic 20.0%
!! TTGTGATTGAATTTATTGAT+TGG + Chr7:61726559-61726578 MsG0780039304.01.T01:intron 20.0%
!!! AATGTTCTAAAGTTTTTGTA+GGG + Chr7:61724743-61724762 MsG0780039304.01.T01:intron 20.0%
!!! ACTATAATGATTTGTGTATA+TGG + Chr7:61726239-61726258 MsG0780039304.01.T01:intron 20.0%
! ACATATTTCAGTGTAATCAT+AGG + Chr7:61725174-61725193 MsG0780039304.01.T01:intron 25.0%
! ACTAATTGGAACTCATTATT+CGG + Chr7:61727250-61727269 MsG0780039304.01.T01:intron 25.0%
! AGAAGTAGAAAAAAAAAAGG+TGG - Chr7:61725637-61725656 None:intergenic 25.0%
! ATTGTAAATGTCATCCAAAA+TGG + Chr7:61726967-61726986 MsG0780039304.01.T01:intron 25.0%
! GGAAATAAGCTAAAAACTTA+CGG + Chr7:61726094-61726113 MsG0780039304.01.T01:intron 25.0%
! TAATTACCAAGTAAAGATCA+AGG - Chr7:61725580-61725599 None:intergenic 25.0%
! TGTTTATACCTATACTCTTT+AGG + Chr7:61725426-61725445 MsG0780039304.01.T01:intron 25.0%
! TTCATATAAAGAGATAGATG+AGG + Chr7:61724972-61724991 MsG0780039304.01.T01:intron 25.0%
!! TATGAAGTTTAGGTTTCTTA+TGG - Chr7:61727149-61727168 None:intergenic 25.0%
!! TTTATTGGTGCGAAATTTTA+TGG + Chr7:61725471-61725490 MsG0780039304.01.T01:intron 25.0%
!!! AGTTTGTTGAAATCATTATC+TGG - Chr7:61726811-61726830 None:intergenic 25.0%
!!! GAATGTTCTAAAGTTTTTGT+AGG + Chr7:61724742-61724761 MsG0780039304.01.T01:intron 25.0%
!!! GTAATCAAGGTTTTAAACAA+TGG - Chr7:61726499-61726518 None:intergenic 25.0%
AAATAGGATCAAAGAGAATG+TGG + Chr7:61726765-61726784 MsG0780039304.01.T01:CDS 30.0%
AAGTCATTTGATCTATTGAG+TGG + Chr7:61724575-61724594 MsG0780039304.01.T01:CDS 30.0%
AATTGTGTATGCAGGATAAT+TGG + Chr7:61726868-61726887 MsG0780039304.01.T01:intron 30.0%
ACATTCTCTTTGATCCTATT+TGG - Chr7:61726766-61726785 None:intergenic 30.0%
AGATCAAATGACTTTGTCTT+TGG - Chr7:61724569-61724588 None:intergenic 30.0%
ATAACGGTTGTCATAATCTT+TGG + Chr7:61726381-61726400 MsG0780039304.01.T01:intron 30.0%
ATATCTTCTACACTCTTGAA+TGG - Chr7:61727361-61727380 None:intergenic 30.0%
ATTAATCCTTCCTAAACTCT+AGG - Chr7:61725007-61725026 None:intergenic 30.0%
CAATGTGATGACATTTATGT+GGG + Chr7:61727183-61727202 MsG0780039304.01.T01:intron 30.0%
CATTCTCTTTGATCCTATTT+GGG - Chr7:61726765-61726784 None:intergenic 30.0%
CTAATTGGAACTCATTATTC+GGG + Chr7:61727251-61727270 MsG0780039304.01.T01:intron 30.0%
GAAAATCTTGTTAGAGACAT+TGG + Chr7:61725793-61725812 MsG0780039304.01.T01:CDS 30.0%
GTTTCATTATTACCATAGCT+TGG - Chr7:61725394-61725413 None:intergenic 30.0%
TACATTAGTTACCTCAACAA+TGG - Chr7:61724672-61724691 None:intergenic 30.0%
TATGAAATTCAGGTCTTCTT+GGG + Chr7:61727090-61727109 MsG0780039304.01.T01:intron 30.0%
TCTCAAATTATTGTTCGTGT+CGG - Chr7:61725149-61725168 None:intergenic 30.0%
TGTCACGGTAATTTACATAA+AGG + Chr7:61726340-61726359 MsG0780039304.01.T01:intron 30.0%
TTATGTAAATTACCGTGACA+TGG - Chr7:61726340-61726359 None:intergenic 30.0%
! AAATTGTGAATTTTGTGTGC+AGG + Chr7:61724777-61724796 MsG0780039304.01.T01:intron 30.0%
! AAATTTTATGGCTGCTATGT+AGG + Chr7:61725483-61725502 MsG0780039304.01.T01:intron 30.0%
! AATTAGGAGTGTAGTAATCA+AGG - Chr7:61726512-61726531 None:intergenic 30.0%
! ATATGGTGTTTTGTGATAGA+TGG + Chr7:61726256-61726275 MsG0780039304.01.T01:intron 30.0%
! CATAAAGACCTAAAGAGTAT+AGG - Chr7:61725437-61725456 None:intergenic 30.0%
!! TTCTTTAAGGGTATTGTTGA+GGG - Chr7:61725543-61725562 None:intergenic 30.0%
AAAGATCAAGGTAGTGAAGT+TGG - Chr7:61725568-61725587 None:intergenic 35.0%
ACGTGTCACATCATACTAAT+TGG + Chr7:61727236-61727255 MsG0780039304.01.T01:intron 35.0%
ACTTAGCAAAATACCAGATC+AGG + Chr7:61726828-61726847 MsG0780039304.01.T01:CDS 35.0%
AGAATGTGGTTGTCTTCAAT+TGG + Chr7:61726779-61726798 MsG0780039304.01.T01:CDS 35.0%
AGATCTCATCCATGATCAAA+CGG + Chr7:61726642-61726661 MsG0780039304.01.T01:CDS 35.0%
AGTGAAGTTGGAGTTCTTTA+AGG - Chr7:61725556-61725575 None:intergenic 35.0%
ATCAATAGATTATGTCGGCA+CGG - Chr7:61725265-61725284 None:intergenic 35.0%
ATGAAATTCAGGTCTTCTTG+GGG + Chr7:61727091-61727110 MsG0780039304.01.T01:intron 35.0%
CAACTTCACTCTTACTAAAC+TGG + Chr7:61725822-61725841 MsG0780039304.01.T01:CDS 35.0%
CAAGAAGACCTGAATTTCAT+AGG - Chr7:61727091-61727110 None:intergenic 35.0%
CTATGAAATTCAGGTCTTCT+TGG + Chr7:61727089-61727108 MsG0780039304.01.T01:intron 35.0%
GAAAGAGTGAATAGGCAAAT+TGG + Chr7:61726908-61726927 MsG0780039304.01.T01:intron 35.0%
GAATGTGGTTGTCTTCAATT+GGG + Chr7:61726780-61726799 MsG0780039304.01.T01:CDS 35.0%
GCAATGTGATGACATTTATG+TGG + Chr7:61727182-61727201 MsG0780039304.01.T01:intron 35.0%
GTGAAGTTGGAGTTCTTTAA+GGG - Chr7:61725555-61725574 None:intergenic 35.0%
TCAATATGGAGTTCAAGAAG+AGG + Chr7:61724828-61724847 MsG0780039304.01.T01:CDS 35.0%
TCACTACCTTGATCTTTACT+TGG + Chr7:61725571-61725590 MsG0780039304.01.T01:CDS 35.0%
TCATTATTACCATAGCTTGG+AGG - Chr7:61725391-61725410 None:intergenic 35.0%
TCTTACTTGTCCCACTAAAT+AGG + Chr7:61725305-61725324 MsG0780039304.01.T01:intron 35.0%
TCTTTGTGAACAAGAGTGAA+GGG + Chr7:61727335-61727354 MsG0780039304.01.T01:CDS 35.0%
TGTGAAAATTGCTGCTATCT+AGG + Chr7:61726585-61726604 MsG0780039304.01.T01:intron 35.0%
TTGACGTGTCTATGAAGTTT+AGG - Chr7:61727159-61727178 None:intergenic 35.0%
TTGCTATCTTAGAGAGCTTA+TGG + Chr7:61726073-61726092 MsG0780039304.01.T01:intron 35.0%
TTGCTTATTGATACATGCAG+AGG + Chr7:61727290-61727309 MsG0780039304.01.T01:intron 35.0%
! AAGCAAGAGCATAGAACTTA+AGG - Chr7:61725929-61725948 None:intergenic 35.0%
! AATTTTACCTGGCATACAGA+AGG - Chr7:61725877-61725896 None:intergenic 35.0%
! CAAGAGTGTAGAAGATATCT+GGG + Chr7:61727363-61727382 MsG0780039304.01.T01:CDS 35.0%
! TCAAGAGTGTAGAAGATATC+TGG + Chr7:61727362-61727381 MsG0780039304.01.T01:CDS 35.0%
! TTAAATAAAGGGCGCGATAA+CGG + Chr7:61726365-61726384 MsG0780039304.01.T01:intron 35.0%
!! CTATTTGGGTTGGTTGATTT+GGG - Chr7:61726751-61726770 None:intergenic 35.0%
!! GTTCTTTAAGGGTATTGTTG+AGG - Chr7:61725544-61725563 None:intergenic 35.0%
ACGGACACTTATCGGATTAA+GGG - Chr7:61725246-61725265 None:intergenic 40.0%
ACTTGTCCCACTAAATAGGT+TGG + Chr7:61725309-61725328 MsG0780039304.01.T01:intron 40.0%
AGAAATGGAGAAGCTTGTCA+AGG + Chr7:61725771-61725790 MsG0780039304.01.T01:CDS 40.0%
AGCAAAATACCAGATCAGGT+AGG + Chr7:61726832-61726851 MsG0780039304.01.T01:intron 40.0%
AGCATACCTGCTATTGGATT+AGG + Chr7:61724602-61724621 MsG0780039304.01.T01:CDS 40.0%
ATCTTATCATTTCTCCACCC+AGG - Chr7:61726290-61726309 None:intergenic 40.0%
ATTGACACTGCTGCTCAATA+TGG + Chr7:61724814-61724833 MsG0780039304.01.T01:CDS 40.0%
CAATAGTAGAAGTCAACGGA+CGG - Chr7:61726994-61727013 None:intergenic 40.0%
CATTTGACTGCAATTCTCTG+CGG - Chr7:61726417-61726436 None:intergenic 40.0%
CCAAATCAACCAACCCAAAT+AGG + Chr7:61726749-61726768 MsG0780039304.01.T01:CDS 40.0%
CTCTTTGATCCTATTTGGGT+TGG - Chr7:61726761-61726780 None:intergenic 40.0%
CTCTTTGTGAACAAGAGTGA+AGG + Chr7:61727334-61727353 MsG0780039304.01.T01:CDS 40.0%
CTTCACTCTTGTTCACAAAG+AGG - Chr7:61727336-61727355 None:intergenic 40.0%
GAGAAATGATAAGATGCTCG+AGG + Chr7:61726295-61726314 MsG0780039304.01.T01:CDS 40.0%
GATTCACTGGCCATTTCAAT+TGG + Chr7:61725681-61725700 MsG0780039304.01.T01:intron 40.0%
GATTGTCATGCCTAGAGTTT+AGG + Chr7:61724994-61725013 MsG0780039304.01.T01:intron 40.0%
GCATGTCCAACCTATTTAGT+GGG - Chr7:61725318-61725337 None:intergenic 40.0%
GCCATTTCAATTGGAAGATG+GGG + Chr7:61725690-61725709 MsG0780039304.01.T01:CDS 40.0%
GCTCCAATAGTAGAAGTCAA+CGG - Chr7:61726998-61727017 None:intergenic 40.0%
GGCCATTTCAATTGGAAGAT+GGG + Chr7:61725689-61725708 MsG0780039304.01.T01:CDS 40.0%
GTAACAGCAATTGTGTATGC+AGG + Chr7:61726860-61726879 MsG0780039304.01.T01:intron 40.0%
GTCCTGTAGAAAGAGTGAAT+AGG + Chr7:61726900-61726919 MsG0780039304.01.T01:intron 40.0%
TATGTGGGATCAACGTGTAA+GGG + Chr7:61727198-61727217 MsG0780039304.01.T01:intron 40.0%
TATTCATCACCTCCAAGCTA+TGG + Chr7:61725379-61725398 MsG0780039304.01.T01:CDS 40.0%
TCCATGATCAAACGGTTGAT+AGG + Chr7:61726650-61726669 MsG0780039304.01.T01:CDS 40.0%
TCCTATCAACCGTTTGATCA+TGG - Chr7:61726654-61726673 None:intergenic 40.0%
TGAATGTGATGCAGATTCAC+TGG + Chr7:61725668-61725687 MsG0780039304.01.T01:intron 40.0%
TGCATGTCCAACCTATTTAG+TGG - Chr7:61725319-61725338 None:intergenic 40.0%
TGCCTATTCACTCTTTCTAC+AGG - Chr7:61726905-61726924 None:intergenic 40.0%
TGGCCATTTCAATTGGAAGA+TGG + Chr7:61725688-61725707 MsG0780039304.01.T01:CDS 40.0%
TTACTATGACCTACCTGATC+TGG - Chr7:61726844-61726863 None:intergenic 40.0%
TTATGTGGGATCAACGTGTA+AGG + Chr7:61727197-61727216 MsG0780039304.01.T01:intron 40.0%
! GACTTTGTCTTTGGTTCATG+TGG - Chr7:61724560-61724579 None:intergenic 40.0%
!! CCTATTTGGGTTGGTTGATT+TGG - Chr7:61726752-61726771 None:intergenic 40.0%
!! TGAATTTCATAGGCACTGGT+GGG - Chr7:61727081-61727100 None:intergenic 40.0%
AAGAAGCTGAACAAGAGTCC+AGG + Chr7:61726679-61726698 MsG0780039304.01.T01:CDS 45.0%
AGAAGCTGAACAAGAGTCCA+GGG + Chr7:61726680-61726699 MsG0780039304.01.T01:CDS 45.0%
AGTTATGCCTTCTGTATGCC+AGG + Chr7:61725867-61725886 MsG0780039304.01.T01:CDS 45.0%
AGTTCGACATGGAAGGAGTT+TGG + Chr7:61725746-61725765 MsG0780039304.01.T01:CDS 45.0%
ATACATGCAGAGGAGAGTCT+TGG + Chr7:61727300-61727319 MsG0780039304.01.T01:intron 45.0%
CACCAGTGCCTATGAAATTC+AGG + Chr7:61727080-61727099 MsG0780039304.01.T01:intron 45.0%
CACGGACACTTATCGGATTA+AGG - Chr7:61725247-61725266 None:intergenic 45.0%
CACTTGGATCACAAGATGGT+GGG + Chr7:61726617-61726636 MsG0780039304.01.T01:CDS 45.0%
CATGTGCCTAATCCAATAGC+AGG - Chr7:61724611-61724630 None:intergenic 45.0%
CTACTATTGGAGCTATGACG+TGG + Chr7:61727005-61727024 MsG0780039304.01.T01:intron 45.0%
GAAGAATGGCATCCATGTCA+CGG + Chr7:61726325-61726344 MsG0780039304.01.T01:CDS 45.0%
GACCTGAATTTCATAGGCAC+TGG - Chr7:61727085-61727104 None:intergenic 45.0%
GATAGATGGAGATGCATCCT+GGG + Chr7:61726270-61726289 MsG0780039304.01.T01:intron 45.0%
GCCCCATCTTCCAATTGAAA+TGG - Chr7:61725694-61725713 None:intergenic 45.0%
GGAAGGAGTTTGGAGAGAAA+TGG + Chr7:61725756-61725775 MsG0780039304.01.T01:CDS 45.0%
GGACATAGCATACCTGCTAT+TGG + Chr7:61724596-61724615 MsG0780039304.01.T01:CDS 45.0%
GGATTAGGCACATGGAAATC+TGG + Chr7:61724617-61724636 MsG0780039304.01.T01:CDS 45.0%
GGCTGTGAAGACAGAATTGA+TGG - Chr7:61724651-61724670 None:intergenic 45.0%
GTCATGCCTAGAGTTTAGGA+AGG + Chr7:61724998-61725017 MsG0780039304.01.T01:intron 45.0%
TCACCACTTGGATCACAAGA+TGG + Chr7:61726613-61726632 MsG0780039304.01.T01:CDS 45.0%
TGATAGATGGAGATGCATCC+TGG + Chr7:61726269-61726288 MsG0780039304.01.T01:intron 45.0%
TGGACTCTTGTTCAGCTTCT+TGG - Chr7:61726680-61726699 None:intergenic 45.0%
TGTCTGTGTTGTGTCTTGTC+TGG - Chr7:61725118-61725137 None:intergenic 45.0%
TGTCTTCACAGCCATTGTTG+AGG + Chr7:61724658-61724677 MsG0780039304.01.T01:CDS 45.0%
TTGTGATCCAAGTGGTGAGT+AGG - Chr7:61726611-61726630 None:intergenic 45.0%
! CACATGGAAATCTGGTTCAC+AGG + Chr7:61724625-61724644 MsG0780039304.01.T01:CDS 45.0%
! CTGCTATTGGATTAGGCACA+TGG + Chr7:61724609-61724628 MsG0780039304.01.T01:CDS 45.0%
! TCCTAAAGCAGGAGAAGTGT+CGG + Chr7:61725723-61725742 MsG0780039304.01.T01:CDS 45.0%
! TGTGAATTTTGTGTGCAGGC+TGG + Chr7:61724781-61724800 MsG0780039304.01.T01:intron 45.0%
!! CGTCCGTTGACTTCTACTAT+TGG + Chr7:61726992-61727011 MsG0780039304.01.T01:intron 45.0%
!! CTGAATTTCATAGGCACTGG+TGG - Chr7:61727082-61727101 None:intergenic 45.0%
!! TTAAGGGTATTGTTGAGGGC+AGG - Chr7:61725539-61725558 None:intergenic 45.0%
!! TTATCGGATTAAGGGTGTCC+TGG - Chr7:61725238-61725257 None:intergenic 45.0%
AATTGGAAGATGGGGCAAGC+AGG + Chr7:61725698-61725717 MsG0780039304.01.T01:CDS 50.0%
ATCTAGGCCTACTCACCACT+TGG + Chr7:61726601-61726620 MsG0780039304.01.T01:intron 50.0%
ATGCAGAGGAGAGTCTTGGA+TGG + Chr7:61727304-61727323 MsG0780039304.01.T01:intron 50.0%
ATGTCGGCACGGACACTTAT+CGG - Chr7:61725254-61725273 None:intergenic 50.0%
ATTGCTGCTGCAGCGTTATG+TGG + Chr7:61726454-61726473 MsG0780039304.01.T01:intron 50.0%
CCACCATCTTGTGATCCAAG+TGG - Chr7:61726619-61726638 None:intergenic 50.0%
CCACTTGGATCACAAGATGG+TGG + Chr7:61726616-61726635 MsG0780039304.01.T01:CDS 50.0%
CTATGACGTGGCACGTTAAC+TGG + Chr7:61727017-61727036 MsG0780039304.01.T01:intron 50.0%
CTCGAGGCTTGCAAGAAGAA+TGG + Chr7:61726311-61726330 MsG0780039304.01.T01:CDS 50.0%
CTTCAATCTGCCATGCAAGC+TGG + Chr7:61725339-61725358 MsG0780039304.01.T01:CDS 50.0%
GAATGACACTTGTCCCTCTC+TGG - Chr7:61726729-61726748 None:intergenic 50.0%
TCCGACACTTCTCCTGCTTT+AGG - Chr7:61725727-61725746 None:intergenic 50.0%
TGCAATTCTCTGCGGTACTG+CGG - Chr7:61726409-61726428 None:intergenic 50.0%
! AGTCAACGGACGGACCATTT+TGG - Chr7:61726984-61727003 None:intergenic 50.0%
! GACACTTCTCCTGCTTTAGG+AGG - Chr7:61725724-61725743 None:intergenic 50.0%
!! AGAAGTGTCGGAGTTCGACA+TGG + Chr7:61725735-61725754 MsG0780039304.01.T01:CDS 50.0%
!! AGGGCAAGTGTTGGTGAAGT+GGG + Chr7:61726699-61726718 MsG0780039304.01.T01:CDS 50.0%
!! CACTGACTTGACCCCTGAAA+GGG + Chr7:61725508-61725527 MsG0780039304.01.T01:CDS 50.0%
!! GATTAAGGGTGTCCTGGTGT+CGG - Chr7:61725232-61725251 None:intergenic 50.0%
AGATGGAGATGCATCCTGGG+TGG + Chr7:61726273-61726292 MsG0780039304.01.T01:intron 55.0%
AGGGCAGGTCTTACCCTTTC+AGG - Chr7:61725524-61725543 None:intergenic 55.0%
ATCTGCCATGCAAGCTGGAG+TGG + Chr7:61725344-61725363 MsG0780039304.01.T01:CDS 55.0%
CAAGAGTCCAGGGCAAGTGT+TGG + Chr7:61726690-61726709 MsG0780039304.01.T01:CDS 55.0%
CACTTCACCAACACTTGCCC+TGG - Chr7:61726700-61726719 None:intergenic 55.0%
CCATGCAAGCTGGAGTGGAA+AGG + Chr7:61725349-61725368 MsG0780039304.01.T01:CDS 55.0%
CCTTTCCACTCCAGCTTGCA+TGG - Chr7:61725352-61725371 None:intergenic 55.0%
GACACTTGTCCCTCTCTGGA+TGG - Chr7:61726725-61726744 None:intergenic 55.0%
GCAAGCTGGAGTGGAAAGGA+AGG + Chr7:61725353-61725372 MsG0780039304.01.T01:CDS 55.0%
GGCAGGTCTTACCCTTTCAG+GGG - Chr7:61725522-61725541 None:intergenic 55.0%
GGGCAGGTCTTACCCTTTCA+GGG - Chr7:61725523-61725542 None:intergenic 55.0%
GTGTCGGAGTTCGACATGGA+AGG + Chr7:61725739-61725758 MsG0780039304.01.T01:CDS 55.0%
TGAAGTGGGCCATCCAGAGA+GGG + Chr7:61726713-61726732 MsG0780039304.01.T01:CDS 55.0%
!! CAGGGCAAGTGTTGGTGAAG+TGG + Chr7:61726698-61726717 MsG0780039304.01.T01:CDS 55.0%
!! GCACTGACTTGACCCCTGAA+AGG + Chr7:61725507-61725526 MsG0780039304.01.T01:CDS 55.0%
ACCAACGCTTGTCCGACACC+AGG + Chr7:61725217-61725236 MsG0780039304.01.T01:intron 60.0%
GCAAGCAGGCCTCCTAAAGC+AGG + Chr7:61725712-61725731 MsG0780039304.01.T01:CDS 60.0%
GTGAAGTGGGCCATCCAGAG+AGG + Chr7:61726712-61726731 MsG0780039304.01.T01:CDS 60.0%
! TCCTGGTGTCGGACAAGCGT+TGG - Chr7:61725221-61725240 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 61724539 61727399 61724539 ID=MsG0780039304.01;Name=MsG0780039304.01
Chr7 mRNA 61724539 61727399 61724539 ID=MsG0780039304.01.T01;Parent=MsG0780039304.01;Name=MsG0780039304.01.T01;_AED=0.35;_eAED=0.35;_QI=0|0|0|1|1|1|8|0|321
Chr7 exon 61724539 61724679 61724539 ID=MsG0780039304.01.T01:exon:17187;Parent=MsG0780039304.01.T01
Chr7 exon 61724799 61724849 61724799 ID=MsG0780039304.01.T01:exon:17186;Parent=MsG0780039304.01.T01
Chr7 exon 61725327 61725400 61725327 ID=MsG0780039304.01.T01:exon:17185;Parent=MsG0780039304.01.T01
Chr7 exon 61725505 61725592 61725505 ID=MsG0780039304.01.T01:exon:17184;Parent=MsG0780039304.01.T01
Chr7 exon 61725682 61725888 61725682 ID=MsG0780039304.01.T01:exon:17183;Parent=MsG0780039304.01.T01
Chr7 exon 61726275 61726346 61726275 ID=MsG0780039304.01.T01:exon:17182;Parent=MsG0780039304.01.T01
Chr7 exon 61726607 61726849 61726607 ID=MsG0780039304.01.T01:exon:17181;Parent=MsG0780039304.01.T01
Chr7 exon 61727310 61727399 61727310 ID=MsG0780039304.01.T01:exon:17180;Parent=MsG0780039304.01.T01
Chr7 CDS 61724539 61724679 61724539 ID=MsG0780039304.01.T01:cds;Parent=MsG0780039304.01.T01
Chr7 CDS 61724799 61724849 61724799 ID=MsG0780039304.01.T01:cds;Parent=MsG0780039304.01.T01
Chr7 CDS 61725327 61725400 61725327 ID=MsG0780039304.01.T01:cds;Parent=MsG0780039304.01.T01
Chr7 CDS 61725505 61725592 61725505 ID=MsG0780039304.01.T01:cds;Parent=MsG0780039304.01.T01
Chr7 CDS 61725682 61725888 61725682 ID=MsG0780039304.01.T01:cds;Parent=MsG0780039304.01.T01
Chr7 CDS 61726275 61726346 61726275 ID=MsG0780039304.01.T01:cds;Parent=MsG0780039304.01.T01
Chr7 CDS 61726607 61726849 61726607 ID=MsG0780039304.01.T01:cds;Parent=MsG0780039304.01.T01
Chr7 CDS 61727310 61727399 61727310 ID=MsG0780039304.01.T01:cds;Parent=MsG0780039304.01.T01
Gene Sequence

>MsG0780039304.01.T01

ATGGCACAAACAGTTAAGCCACATGAACCAAAGACAAAGTCATTTGATCTATTGAGTGGACATAGCATACCTGCTATTGGATTAGGCACATGGAAATCTGGTTCACAGGCCATCAATTCTGTCTTCACAGCCATTGTTGAGGCTGGTTATAGACACATTGACACTGCTGCTCAATATGGAGTTCAAGAAGAGGTTGGACATGCACTTCAATCTGCCATGCAAGCTGGAGTGGAAAGGAAGGATCTATTCATCACCTCCAAGCTATGGTGCACTGACTTGACCCCTGAAAGGGTAAGACCTGCCCTCAACAATACCCTTAAAGAACTCCAACTTCACTACCTTGATCTTTACTTGATTCACTGGCCATTTCAATTGGAAGATGGGGCAAGCAGGCCTCCTAAAGCAGGAGAAGTGTCGGAGTTCGACATGGAAGGAGTTTGGAGAGAAATGGAGAAGCTTGTCAAGGAAAATCTTGTTAGAGACATTGGAATATGCAACTTCACTCTTACTAAACTGGACAAACTAGTCAATATTGCTCAAGTTATGCCTTCTGTATGCCAGATGGAGATGCATCCTGGGTGGAGAAATGATAAGATGCTCGAGGCTTGCAAGAAGAATGGCATCCATGTCACGGCCTACTCACCACTTGGATCACAAGATGGTGGGAGAGATCTCATCCATGATCAAACGGTTGATAGGATAGCCAAGAAGCTGAACAAGAGTCCAGGGCAAGTGTTGGTGAAGTGGGCCATCCAGAGAGGGACAAGTGTCATTCCCAAATCAACCAACCCAAATAGGATCAAAGAGAATGTGGTTGTCTTCAATTGGGAACTTCCAGATAATGATTTCAACAAACTTAGCAAAATACCAGATCAGAGGAGAGTCTTGGATGGTGAAGACCTCTTTGTGAACAAGAGTGAAGGGCCATTCAAGAGTGTAGAAGATATCTGGGACCATGAAGATTAA
Protein sequence

>MsG0780039304.01.T01

MAQTVKPHEPKTKSFDLLSGHSIPAIGLGTWKSGSQAINSVFTAIVEAGYRHIDTAAQYGVQEEVGHALQSAMQAGVERKDLFITSKLWCTDLTPERVRPALNNTLKELQLHYLDLYLIHWPFQLEDGASRPPKAGEVSEFDMEGVWREMEKLVKENLVRDIGICNFTLTKLDKLVNIAQVMPSVCQMEMHPGWRNDKMLEACKKNGIHVTAYSPLGSQDGGRDLIHDQTVDRIAKKLNKSPGQVLVKWAIQRGTSVIPKSTNPNRIKENVVVFNWELPDNDFNKLSKIPDQRRVLDGEDLFVNKSEGPFKSVEDIWDHED*