AlfalfaGEDB | MsG0780039304.01

M. sativa cultivar ZhongmuNo.1 / MsG0780039304.01

KEGG: K00002
GO: GO:0016491 GO:0055114
PFAM: PF00248

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039304.01.T01	XP_003623412.2	97.508	321	8	0	1	321	1	321	0	655

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039304.01.T01	P23901	66.45	307	101	1	15	321	16	320	1.38E-163	461

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039304.01.T01	G7KU48	97.508	321	8	0	1	321	1	321	0.0	655

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
MsG0180005553.01	MsG0780039304.01	PPI
MsG0280008313.01	MsG0780039304.01	PPI
MsG0480019714.01	MsG0780039304.01	PPI
MsG0480021356.01	MsG0780039304.01	PPI
MsG0480021357.01	MsG0780039304.01	PPI
MsG0480021360.01	MsG0780039304.01	PPI
MsG0480021361.01	MsG0780039304.01	PPI
MsG0680034724.01	MsG0780039304.01	PPI
MsG0680034729.01	MsG0780039304.01	PPI
MsG0680034730.01	MsG0780039304.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039304.01.T01	MTR_7g070500	97.508	321	8	0	1	321	1	321	0.0	655
MsG0780039304.01.T01	MTR_7g070500	97.260	292	8	0	1	292	1	292	0.0	595
MsG0780039304.01.T01	MTR_8g070095	45.223	314	161	7	15	320	8	318	5.67e-88	266
MsG0780039304.01.T01	MTR_8g070115	44.268	314	168	5	11	320	4	314	4.61e-84	256
MsG0780039304.01.T01	MTR_7g063580	45.307	309	163	5	15	320	48	353	7.27e-84	257
MsG0780039304.01.T01	MTR_4g021350	44.516	310	167	5	13	320	6	312	1.60e-81	250
MsG0780039304.01.T01	MTR_4g072320	40.584	308	171	6	17	318	11	312	3.24e-77	239
MsG0780039304.01.T01	MTR_4g072350	40.514	311	173	7	17	318	11	318	1.28e-75	235
MsG0780039304.01.T01	MTR_4g072360	39.228	311	177	6	17	318	11	318	1.74e-74	232
MsG0780039304.01.T01	MTR_4g021350	45.520	279	149	3	13	289	6	283	4.28e-74	230

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039304.01.T01	AT5G01670	74.434	309	79	0	13	321	14	322	0.0	509
MsG0780039304.01.T01	AT5G01670	68.452	336	79	1	13	321	14	349	1.14e-177	495
MsG0780039304.01.T01	AT2G37770	44.839	310	164	5	15	320	8	314	1.65e-90	273
MsG0780039304.01.T01	AT3G53880	43.226	310	169	5	15	320	8	314	1.08e-84	258
MsG0780039304.01.T01	AT2G37790	42.308	312	172	6	13	320	6	313	1.23e-83	255
MsG0780039304.01.T01	AT2G37760	40.968	310	172	5	15	320	8	310	1.67e-81	249
MsG0780039304.01.T01	AT2G37760	40.968	310	172	5	15	320	8	310	1.67e-81	249
MsG0780039304.01.T01	AT2G37760	42.657	286	155	4	15	296	8	288	9.92e-78	239
MsG0780039304.01.T01	AT3G53880	44.086	279	151	3	15	289	8	285	2.71e-77	239
MsG0780039304.01.T01	AT2G37760	42.657	286	154	5	15	296	8	287	4.14e-76	235

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Find 103 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATCAAGGTAGTGAAGT+TGG	0.360588	7:-61725565	None:intergenic
AAATAGGATCAAAGAGAATG+TGG	0.610632	7:+61726765	MsG0780039304.01.T01:CDS
AAGAAGCTGAACAAGAGTCC+AGG	0.507422	7:+61726679	MsG0780039304.01.T01:CDS
AAGTCATTTGATCTATTGAG+TGG	0.594462	7:+61724575	MsG0780039304.01.T01:CDS
AATTGGAAGATGGGGCAAGC+AGG	0.547430	7:+61725698	MsG0780039304.01.T01:CDS
ACATTCTCTTTGATCCTATT+TGG	0.089316	7:-61726763	None:intergenic
ACTTAGCAAAATACCAGATC+AGG	0.492376	7:+61726828	MsG0780039304.01.T01:CDS
AGAAATGGAGAAGCTTGTCA+AGG	0.657989	7:+61725771	MsG0780039304.01.T01:CDS
AGAAGCTGAACAAGAGTCCA+GGG	0.616824	7:+61726680	MsG0780039304.01.T01:CDS
AGAAGTGTCGGAGTTCGACA+TGG	0.616872	7:+61725735	MsG0780039304.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATAGGATCAAAGAGAATG+TGG	+	Chr7:61726765-61726784	MsG0780039304.01.T01:CDS	30.0%
AAGTCATTTGATCTATTGAG+TGG	+	Chr7:61724575-61724594	MsG0780039304.01.T01:CDS	30.0%
AATTGTGTATGCAGGATAAT+TGG	+	Chr7:61726868-61726887	MsG0780039304.01.T01:intron	30.0%
ACATTCTCTTTGATCCTATT+TGG	-	Chr7:61726766-61726785	None:intergenic	30.0%
AGATCAAATGACTTTGTCTT+TGG	-	Chr7:61724569-61724588	None:intergenic	30.0%
ATAACGGTTGTCATAATCTT+TGG	+	Chr7:61726381-61726400	MsG0780039304.01.T01:intron	30.0%
ATATCTTCTACACTCTTGAA+TGG	-	Chr7:61727361-61727380	None:intergenic	30.0%
ATTAATCCTTCCTAAACTCT+AGG	-	Chr7:61725007-61725026	None:intergenic	30.0%
CAATGTGATGACATTTATGT+GGG	+	Chr7:61727183-61727202	MsG0780039304.01.T01:intron	30.0%
CATTCTCTTTGATCCTATTT+GGG	-	Chr7:61726765-61726784	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	61724539	61727399	61724539	ID=MsG0780039304.01;Name=MsG0780039304.01
Chr7	mRNA	61724539	61727399	61724539	ID=MsG0780039304.01.T01;Parent=MsG0780039304.01;Name=MsG0780039304.01.T01;_AED=0.35;_eAED=0.35;_QI=0\|0\|0\|1\|1\|1\|8\|0\|321
Chr7	exon	61724539	61724679	61724539	ID=MsG0780039304.01.T01:exon:17187;Parent=MsG0780039304.01.T01
Chr7	exon	61724799	61724849	61724799	ID=MsG0780039304.01.T01:exon:17186;Parent=MsG0780039304.01.T01
Chr7	exon	61725327	61725400	61725327	ID=MsG0780039304.01.T01:exon:17185;Parent=MsG0780039304.01.T01
Chr7	exon	61725505	61725592	61725505	ID=MsG0780039304.01.T01:exon:17184;Parent=MsG0780039304.01.T01
Chr7	exon	61725682	61725888	61725682	ID=MsG0780039304.01.T01:exon:17183;Parent=MsG0780039304.01.T01
Chr7	exon	61726275	61726346	61726275	ID=MsG0780039304.01.T01:exon:17182;Parent=MsG0780039304.01.T01
Chr7	exon	61726607	61726849	61726607	ID=MsG0780039304.01.T01:exon:17181;Parent=MsG0780039304.01.T01
Chr7	exon	61727310	61727399	61727310	ID=MsG0780039304.01.T01:exon:17180;Parent=MsG0780039304.01.T01
Chr7	CDS	61724539	61724679	61724539	ID=MsG0780039304.01.T01:cds;Parent=MsG0780039304.01.T01
Chr7	CDS	61724799	61724849	61724799	ID=MsG0780039304.01.T01:cds;Parent=MsG0780039304.01.T01
Chr7	CDS	61725327	61725400	61725327	ID=MsG0780039304.01.T01:cds;Parent=MsG0780039304.01.T01
Chr7	CDS	61725505	61725592	61725505	ID=MsG0780039304.01.T01:cds;Parent=MsG0780039304.01.T01
Chr7	CDS	61725682	61725888	61725682	ID=MsG0780039304.01.T01:cds;Parent=MsG0780039304.01.T01
Chr7	CDS	61726275	61726346	61726275	ID=MsG0780039304.01.T01:cds;Parent=MsG0780039304.01.T01
Chr7	CDS	61726607	61726849	61726607	ID=MsG0780039304.01.T01:cds;Parent=MsG0780039304.01.T01
Chr7	CDS	61727310	61727399	61727310	ID=MsG0780039304.01.T01:cds;Parent=MsG0780039304.01.T01

Gene Sequence

>MsG0780039304.01.T01

ATGGCACAAACAGTTAAGCCACATGAACCAAAGACAAAGTCATTTGATCTATTGAGTGGACATAGCATACCTGCTATTGGATTAGGCACATGGAAATCTGGTTCACAGGCCATCAATTCTGTCTTCACAGCCATTGTTGAGGCTGGTTATAGACACATTGACACTGCTGCTCAATATGGAGTTCAAGAAGAGGTTGGACATGCACTTCAATCTGCCATGCAAGCTGGAGTGGAAAGGAAGGATCTATTCATCACCTCCAAGCTATGGTGCACTGACTTGACCCCTGAAAGGGTAAGACCTGCCCTCAACAATACCCTTAAAGAACTCCAACTTCACTACCTTGATCTTTACTTGATTCACTGGCCATTTCAATTGGAAGATGGGGCAAGCAGGCCTCCTAAAGCAGGAGAAGTGTCGGAGTTCGACATGGAAGGAGTTTGGAGAGAAATGGAGAAGCTTGTCAAGGAAAATCTTGTTAGAGACATTGGAATATGCAACTTCACTCTTACTAAACTGGACAAACTAGTCAATATTGCTCAAGTTATGCCTTCTGTATGCCAGATGGAGATGCATCCTGGGTGGAGAAATGATAAGATGCTCGAGGCTTGCAAGAAGAATGGCATCCATGTCACGGCCTACTCACCACTTGGATCACAAGATGGTGGGAGAGATCTCATCCATGATCAAACGGTTGATAGGATAGCCAAGAAGCTGAACAAGAGTCCAGGGCAAGTGTTGGTGAAGTGGGCCATCCAGAGAGGGACAAGTGTCATTCCCAAATCAACCAACCCAAATAGGATCAAAGAGAATGTGGTTGTCTTCAATTGGGAACTTCCAGATAATGATTTCAACAAACTTAGCAAAATACCAGATCAGAGGAGAGTCTTGGATGGTGAAGACCTCTTTGTGAACAAGAGTGAAGGGCCATTCAAGAGTGTAGAAGATATCTGGGACCATGAAGATTAA

Protein sequence

>MsG0780039304.01.T01

MAQTVKPHEPKTKSFDLLSGHSIPAIGLGTWKSGSQAINSVFTAIVEAGYRHIDTAAQYGVQEEVGHALQSAMQAGVERKDLFITSKLWCTDLTPERVRPALNNTLKELQLHYLDLYLIHWPFQLEDGASRPPKAGEVSEFDMEGVWREMEKLVKENLVRDIGICNFTLTKLDKLVNIAQVMPSVCQMEMHPGWRNDKMLEACKKNGIHVTAYSPLGSQDGGRDLIHDQTVDRIAKKLNKSPGQVLVKWAIQRGTSVIPKSTNPNRIKENVVVFNWELPDNDFNKLSKIPDQRRVLDGEDLFVNKSEGPFKSVEDIWDHED*