AlfalfaGEDB | MsG0480021646.01

M. sativa cultivar ZhongmuNo.1 / MsG0480021646.01

KEGG: -
GO: GO:0005506 GO:0016705 GO:0020037 GO:0055114
PFAM: PF00067

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021646.01.T01	XP_024638375.2	94.81	501	26	0	1	501	1	501	0	963

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021646.01.T01	Q8VWZ7	54	500	222	4	1	499	1	493	0	559

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021646.01.T01	A0A396I806	94.810	501	26	0	1	501	1	501	0.0	963

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
MsG0180004922.01	MsG0480021646.01	PPI
MsG0280006530.01	MsG0480021646.01	PPI
MsG0280006531.01	MsG0480021646.01	PPI
MsG0280008072.01	MsG0480021646.01	PPI
MsG0280009943.01	MsG0480021646.01	PPI
MsG0480021646.01	MsG0280009198.01	PPI
MsG0480021646.01	MsG0580027127.01	PPI
MsG0480021646.01	MsG0280009942.01	PPI
MsG0480021646.01	MsG0280006533.01	PPI
MsG0480021646.01	MsG0280006532.01	PPI

Showing 1 to 10 of 55 entries

Previous1 2 3 4 5 6Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0480021646.01.T01	MTR_4g078110	91.093	494	29	1	8	501	1	479	896
MsG0480021646.01.T01	MTR_1g103670	61.303	491	189	1	6	496	5	494	634
MsG0480021646.01.T01	MTR_1g031700	59.879	496	198	1	6	501	5	499	630
MsG0480021646.01.T01	MTR_1g103680	62.777	497	183	2	4	499	3	498	610
MsG0480021646.01.T01	MTR_8g046240	57.287	494	210	1	7	499	13	506	608
MsG0480021646.01.T01	MTR_1g037370	62.179	468	176	1	34	501	30	496	594
MsG0480021646.01.T01	MTR_8g046210	58.621	493	202	2	8	499	15	506	587
MsG0480021646.01.T01	MTR_5g007450	55.754	504	210	6	1	501	7	500	580
MsG0480021646.01.T01	MTR_5g007460	57.652	477	198	2	29	501	3	479	577
MsG0480021646.01.T01	MTR_5g007550	55.754	504	210	6	1	501	7	500	574

Showing 1 to 10 of 386 entries

Previous1 2 3 4 5…39Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021646.01.T01	AT1G33720	45.200	500	267	4	5	498	8	506	4.70e-159	462
MsG0480021646.01.T01	AT2G45560	44.869	497	267	4	8	498	11	506	1.35e-158	461
MsG0480021646.01.T01	AT2G45550	44.379	507	272	5	1	498	1	506	1.38e-157	458
MsG0480021646.01.T01	AT3G61040	47.436	468	239	3	34	498	32	495	6.05e-156	453
MsG0480021646.01.T01	AT2G45570	45.987	461	241	4	45	498	48	507	4.29e-149	436
MsG0480021646.01.T01	AT2G45580	44.685	461	247	3	45	498	48	507	7.22e-148	433
MsG0480021646.01.T01	AT1G33720	47.594	374	190	3	130	498	2	374	1.72e-123	366
MsG0480021646.01.T01	AT1G33720	47.594	374	190	3	130	498	2	374	1.72e-123	366
MsG0480021646.01.T01	AT1G33720	47.594	374	190	3	130	498	2	374	1.72e-123	366
MsG0480021646.01.T01	AT1G33730	48.209	363	180	4	136	492	4	364	5.24e-121	359

Showing 1 to 10 of 288 entries

Previous1 2 3 4 5…29Next

Find 113 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTACCAAAGATAAATGT+TGG	0.474018	4:-61232679	None:intergenic
AAGACTCTTGATGAGAGTAA+GGG	0.606440	4:+61232224	MsG0480021646.01.T01:CDS
AAGGGAAGAGGAGTAGGTCC+TGG	0.560551	4:-61231909	None:intergenic
AATACAAATGTGGAAATTTG+TGG	0.467273	4:+61234728	MsG0480021646.01.T01:CDS
AATAGAAGATATGAACATGG+AGG	0.710580	4:+61235015	MsG0480021646.01.T01:CDS
AATTTCAGCTAATTTGGCTA+AGG	0.528580	4:-61231973	None:intergenic
AATTTCATCTACGCTAGAAT+GGG	0.514797	4:+61234520	MsG0480021646.01.T01:CDS
AATTTCGAGCTTACACCATT+TGG	0.395915	4:+61234884	MsG0480021646.01.T01:CDS
AATTTGGCTAAGGATTTGTG+AGG	0.690002	4:-61231963	None:intergenic
AATTTGTCCTGGTCTAACGC+TGG	0.637094	4:+61234919	MsG0480021646.01.T01:CDS

Showing 1 to 10 of 113 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAACACATCATCGAATTTAG+TGG	+	Chr4:61234230-61234249	MsG0480021646.01.T01:intron	30.0%
AACGATATTGAGCGTAATAT+TGG	+	Chr4:61233894-61233913	MsG0480021646.01.T01:intron	30.0%
AATAGAAGATATGAACATGG+AGG	+	Chr4:61235015-61235034	MsG0480021646.01.T01:CDS	30.0%
AATTTCAGCTAATTTGGCTA+AGG	-	Chr4:61231976-61231995	None:intergenic	30.0%
AATTTCATCTACGCTAGAAT+GGG	+	Chr4:61234520-61234539	MsG0480021646.01.T01:CDS	30.0%
AGAATGTCATGCTATATTTG+TGG	-	Chr4:61232142-61232161	None:intergenic	30.0%
AGCAATATCTGATTCATCTA+AGG	-	Chr4:61234627-61234646	None:intergenic	30.0%
AGCTGTTGATATTGGAAATA+TGG	+	Chr4:61232310-61232329	MsG0480021646.01.T01:CDS	30.0%
ATCGAATTTAGTGGTATTTG+GGG	+	Chr4:61234239-61234258	MsG0480021646.01.T01:intron	30.0%
CATCGAATTTAGTGGTATTT+GGG	+	Chr4:61234238-61234257	MsG0480021646.01.T01:intron	30.0%

Showing 1 to 10 of 194 entries

Previous1 2 3 4 5…20Next

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	61231801	61235105	61231801	ID=MsG0480021646.01;Name=MsG0480021646.01
Chr4	mRNA	61231801	61235105	61231801	ID=MsG0480021646.01.T01;Parent=MsG0480021646.01;Name=MsG0480021646.01.T01;_AED=0.49;_eAED=0.49;_QI=0\|0\|0\|1\|1\|1\|2\|0\|501
Chr4	exon	61231801	61232694	61231801	ID=MsG0480021646.01.T01:exon:8641;Parent=MsG0480021646.01.T01
Chr4	exon	61234494	61235105	61234494	ID=MsG0480021646.01.T01:exon:8640;Parent=MsG0480021646.01.T01
Chr4	CDS	61231801	61232694	61231801	ID=MsG0480021646.01.T01:cds;Parent=MsG0480021646.01.T01
Chr4	CDS	61234494	61235105	61234494	ID=MsG0480021646.01.T01:cds;Parent=MsG0480021646.01.T01

Gene Sequence

>MsG0480021646.01.T01

ATGGAATACTTGCCAAGTTGTATGTTCTTCCTCTCTCTATTGGCATTGACTCTGTATTTTCTGCTTTCAAGAGCCAAACTCATAAACAATTCAAACATCAAGCTTCCACCAGGACCTACTCCTCTTCCCTTCATAGGAAACCTCCTTCAATTAGGAGAAAAGCCTCACAAATCCTTAGCCAAATTAGCTGAAATTTATGGCCCAATCATGAGTCTAAAGCTAGGTCAAATAACCACCATAGTTGTCTCTTCACCTAAAATGGCCAAAGAAATACTTCAAACCCATGATCAATTCTTATCAAATAAAGTCATTCCCAATGCTGTGCAAGTTCATGACCACCACAAATATAGCATGACATTCTTACCTGTTTCACCTCTTTGGAGAGACTTAAGAAAAATAGGCAATAGTCAATTACTCTCTAACAAGACTCTTGATGAGAGTAAGGGAATTAGGAGTCAGAAAGTGCAAGAATTCATCAATGATATTAATCAAAGTAGTCTTGTTAATGAAGCTGTTGATATTGGAAATATGGCTTTTAAGACATCAATCAACTTGTTGTCAAACACTATTTTCTCTATTGATTTGGTTGACTCTTCTGGTTCAGTTGGTGATTTCAAGGAGCTGGTTGTGAATATAATGGAAGAATGTGGAAAACCAAACATTGCTGATCTTTTTCCTGCACTTAGGATGTTTGACCCACAAGGTATTAAGGGTCGTACATATGTTTATGCTGGCAAGATCCTTGATATCTTCCAACGTTTGGTTGATCAACGGTTGAAGATGAGGGAAGCCAAGGGTTTTGACAGCAACAATGACATGCTAAATACCTTTCTAAACATTGATCAAGCCAACACCCAAGTGATGAACAGAACCCAAATCCAACATTTATCTTTGACTCTGTTTGTTGCGGGTACGGATACAATTTCATCTACGCTAGAATGGGCAATGGCAGAATTACTCAAAAATGAAAAGATTATGTCAAAAGCAAAACAAGAGCTGGAACAAATAATTGGCAAAGGAAAAACCTTAGATGAATCAGATATTGCTAAGCTTCCTTATTTACAAGCAATAATAAAAGAGACATTTCGATTGCACCCTCCCGTTCCATTCTTAGTCCCTCGAAAAGCAAATACAAATGTGGAAATTTGTGGATACACAATACCAAAAGATGCACATGTGTGGGTCAATGTGTGGGCTATTGGTAGAAATTCTAGTGTTTGGGAAAATGCAAATTTGTTTTTACCTGAGAGATTCTTAAGATCGGACATTGATGTTAAAGGTCATAATTTCGAGCTTACACCATTTGGTGCTGGGAGGCGAATTTGTCCTGGTCTAACGCTGGCGACGAGGATGTTGCATTTGATGTTGGGTTCATTAATCAACTGTTTTAACTGGAAATTGGAAGATGGAAAGATAATAGAAGATATGAACATGGAGGACAAGTTTGGGATAACATTAGCAAAGGCTCAGCCAGTAAGAGTCATTCCAGAAAAAATATACAACTAG

Protein sequence

>MsG0480021646.01.T01

MEYLPSCMFFLSLLALTLYFLLSRAKLINNSNIKLPPGPTPLPFIGNLLQLGEKPHKSLAKLAEIYGPIMSLKLGQITTIVVSSPKMAKEILQTHDQFLSNKVIPNAVQVHDHHKYSMTFLPVSPLWRDLRKIGNSQLLSNKTLDESKGIRSQKVQEFINDINQSSLVNEAVDIGNMAFKTSINLLSNTIFSIDLVDSSGSVGDFKELVVNIMEECGKPNIADLFPALRMFDPQGIKGRTYVYAGKILDIFQRLVDQRLKMREAKGFDSNNDMLNTFLNIDQANTQVMNRTQIQHLSLTLFVAGTDTISSTLEWAMAELLKNEKIMSKAKQELEQIIGKGKTLDESDIAKLPYLQAIIKETFRLHPPVPFLVPRKANTNVEICGYTIPKDAHVWVNVWAIGRNSSVWENANLFLPERFLRSDIDVKGHNFELTPFGAGRRICPGLTLATRMLHLMLGSLINCFNWKLEDGKIIEDMNMEDKFGITLAKAQPVRVIPEKIYN*