AlfalfaGEDB | MsG0480021830.01

M. sativa cultivar ZhongmuNo.1 / MsG0480021830.01

KEGG: -
GO: GO:0005506 GO:0016705 GO:0020037 GO:0055114
PFAM: PF00067

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021830.01.T01	XP_013456602.1	96.651	418	14	0	1	418	79	496	0	843

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021830.01.T01	W8JMU7	51.19	420	192	5	1	418	77	485	2.12E-155	451

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021830.01.T01	A0A072UNJ5	96.651	418	14	0	1	418	79	496	0.0	843

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048748.01	MsG0480021830.01	0.825866	3.711291e-54	3.424472e-51
MsG0080048938.01	MsG0480021830.01	0.818759	1.657483e-52	1.251774e-49
MsG0080049070.01	MsG0480021830.01	0.810107	1.358789e-50	8.120032e-48
MsG0180000200.01	MsG0480021830.01	0.809095	2.241724e-50	1.304192e-47
MsG0180000599.01	MsG0480021830.01	0.802122	6.517071e-49	3.166726e-46
MsG0180000942.01	MsG0480021830.01	0.886524	3.173381e-72	2.274824e-68
MsG0180000976.01	MsG0480021830.01	0.825773	3.904570e-54	3.593147e-51
MsG0180000977.01	MsG0480021830.01	0.809685	1.674727e-50	9.897853e-48
MsG0180001119.01	MsG0480021830.01	0.811690	6.172465e-51	3.846073e-48
MsG0180001120.01	MsG0480021830.01	0.806084	9.765159e-50	5.252761e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021830.01.T01	MTR_4g077210	96.651	418	14	0	1	418	79	496	0.0	843
MsG0480021830.01.T01	MTR_4g095050	47.470	415	203	6	11	418	85	491	2.09e-134	395
MsG0480021830.01.T01	MTR_5g016410	45.154	423	220	5	1	420	76	489	6.23e-134	394
MsG0480021830.01.T01	MTR_5g016440	45.673	416	218	5	3	418	77	484	1.61e-133	393
MsG0480021830.01.T01	MTR_4g094775	44.418	421	222	5	1	418	76	487	1.55e-130	385
MsG0480021830.01.T01	MTR_2g437840	42.317	423	233	4	1	420	75	489	2.53e-122	364
MsG0480021830.01.T01	MTR_2g437880	44.811	424	221	6	1	418	76	492	1.05e-119	358
MsG0480021830.01.T01	MTR_4g094772	42.005	419	225	6	1	418	78	479	1.07e-116	350
MsG0480021830.01.T01	MTR_4g035330	40.952	420	228	7	1	418	75	476	1.05e-108	329
MsG0480021830.01.T01	MTR_8g012585	38.626	422	244	7	2	410	19	438	7.34e-97	298

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021830.01.T01	AT4G37330	46.651	418	206	7	3	418	80	482	1.18e-131	388
MsG0480021830.01.T01	AT4G37370	46.081	421	210	9	1	418	77	483	2.70e-130	385
MsG0480021830.01.T01	AT4G37320	45.238	420	212	8	3	418	80	485	2.51e-129	382
MsG0480021830.01.T01	AT5G36220	45.215	418	217	6	2	418	85	491	3.44e-129	382
MsG0480021830.01.T01	AT4G37340	45.000	420	219	7	1	418	77	486	6.99e-129	381
MsG0480021830.01.T01	AT4G37360	45.843	421	213	7	1	418	77	485	1.94e-128	380
MsG0480021830.01.T01	AT4G37310	43.735	423	230	5	2	418	77	497	4.46e-126	375
MsG0480021830.01.T01	AT3G28740	44.762	420	219	7	1	418	86	494	7.18e-125	371
MsG0480021830.01.T01	AT2G23220	42.381	420	227	8	2	418	94	501	2.27e-124	370
MsG0480021830.01.T01	AT1G66540	47.090	378	188	6	44	418	4	372	8.43e-124	364

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Find 80 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTAAAATACTTGCAAA+TGG	0.487970	4:+64924360	MsG0480021830.01.T01:CDS
AAACAGTCTTCTACAGCAGA+AGG	0.600956	4:-64922006	None:intergenic
AAGTGAGAGTGCCCATTCCA+TGG	0.571276	4:-64924245	None:intergenic
AATAGTGAAAGGCGTTGTTT+TGG	0.476040	4:+64922638	MsG0480021830.01.T01:CDS
AATATGATTCCATTTGGTAT+TGG	0.402964	4:+64924601	MsG0480021830.01.T01:CDS
AATGAGTATGTAGAGCTTCT+TGG	0.308115	4:+64922399	MsG0480021830.01.T01:CDS
AATGCTTCTAGTGAATCTTT+GGG	0.482554	4:+64924486	MsG0480021830.01.T01:CDS
AATTACAATAATACGGCGTT+AGG	0.339612	4:+64922090	MsG0480021830.01.T01:CDS
ACAAATCTTTGAAGGGTGCA+AGG	0.525222	4:+64922236	MsG0480021830.01.T01:CDS
ACTAGAAGCATTGTCCCTTT+TGG	0.315247	4:-64924475	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAACCTACTACAACCA+AGG	-	Chr4:64923772-64923791	None:intergenic	30.0%
AATGCTTCTAGTGAATCTTT+GGG	+	Chr4:64924486-64924505	MsG0480021830.01.T01:CDS	30.0%
AATTACAATAATACGGCGTT+AGG	+	Chr4:64922090-64922109	MsG0480021830.01.T01:CDS	30.0%
ACATGATTAACCTTATGTTG+CGG	+	Chr4:64923394-64923413	MsG0480021830.01.T01:intron	30.0%
ACTCATGCAACAATTATGAA+TGG	-	Chr4:64923700-64923719	None:intergenic	30.0%
AGAGAGATACACACAAATTA+TGG	+	Chr4:64924024-64924043	MsG0480021830.01.T01:intron	30.0%
AGATACACACAAATTATGGA+GGG	+	Chr4:64924028-64924047	MsG0480021830.01.T01:intron	30.0%
ATTACAATAATACGGCGTTA+GGG	+	Chr4:64922091-64922110	MsG0480021830.01.T01:CDS	30.0%
CAGAAACAATGAATAAGGTA+AGG	+	Chr4:64924281-64924300	MsG0480021830.01.T01:CDS	30.0%
CATACAACACAAATTGCATA+AGG	-	Chr4:64924785-64924804	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	64921988	64924807	64921988	ID=MsG0480021830.01;Name=MsG0480021830.01
Chr4	mRNA	64921988	64924807	64921988	ID=MsG0480021830.01.T01;Parent=MsG0480021830.01;Name=MsG0480021830.01.T01;_AED=0.45;_eAED=0.45;_QI=0\|0\|0\|1\|1\|1\|2\|0\|423
Chr4	exon	64921988	64922659	64921988	ID=MsG0480021830.01.T01:exon:7150;Parent=MsG0480021830.01.T01
Chr4	exon	64924208	64924807	64924208	ID=MsG0480021830.01.T01:exon:7151;Parent=MsG0480021830.01.T01
Chr4	CDS	64921988	64922659	64921988	ID=MsG0480021830.01.T01:cds;Parent=MsG0480021830.01.T01
Chr4	CDS	64924208	64924807	64924208	ID=MsG0480021830.01.T01:cds;Parent=MsG0480021830.01.T01

Gene Sequence

>MsG0480021830.01.T01

ATGCTTGTTGTTTCTTCACCTTCTGCTGTAGAAGACTGTTTGTCAAAAAATGATATTACATTTGCAAACCGTACTTCCCATACACTTGCCGGAAAATATCTCAATTACAATAATACGGCGTTAGGGTTTTCTCCCTACGGTGAACTTCATCGCAAACTACGTCGTTTAACGACATCTGAGCTTTTCTCCACCAATCGTCTTGCGATGTTCACCAAAGTTCGAGAAGAAGAGGTGCAATTGTTAGTTAAACAAATCTTTGAAGGGTGCAAGGGACAATTGTTGTCTAGAGTTGACCTTAAAAGAAAATGTTTAGAACTTTCTTTCAATATTATGTTGAGAGTAATTTCTGGGAAACGATATTATGGTGAGGATGCAGTTGCCTTAGAAGGAAAGGAGTTTCAGATTTTAATGAATGAGTATGTAGAGCTTCTTGGAAATGGAAATTTGAATGATTGTTTTCCAATACTAAAATGGATTGATTTTCAAGGGAAGAAAGAGAAAATGATAAACTTGATGAAAAAGATGGATAGCTTTCTTCAGAGGATACTTGATGAGAAACGAAGAAATTGGAGCAATGACCAAAAAAATATGACGTTGATTGATGTTATGCTAGACTTGCAACAAAAGGAGCCAGAATTCTACACGCATGAAATAGTGAAAGGCGTTGTTTTGGTAATACTTGTAGCTGGCTCTGAGCCATCAGCTACAACCATGGAATGGGCACTCTCACTTCTACTAAACCATCCAGAAACAATGAATAAGGTAAGGGCTGAAATAGACACTTCTGTGGGACAAGATAAACTTGTGAATGAATCTGATGCTTCAAAACTAAAATACTTGCAAATGGTAATTATGGAGACACTTCGTTTATACCCTCCGGCTCCACTAATGTTACCACACGAGTCTTCTAATGATTGCAATGTTTGTGGTTTTGATATACCAAAAGGGACAATGCTTCTAGTGAATCTTTGGGCCCTACATAGAGACCCTAACTTATGGAAAGATCCAACAAGGTTTGTGCCAGAGAGATTTGAAGAAGGGGACTTAGGTGGTGGTGAAATTTACAATATGATTCCATTTGGTATTGGAAGGAGATCTTGTCCTGGAGCTGCTTTAGCAAAACGTTTTATTGGGCATGCAATAGGATCTTTGATTCAATGTTTTGAGTGGGAGAGAATTGGGGATGAAGAAATTGACATGAATGAGGGAATAGGGCTTACAATGCCCAAAGTTGAATTTTTGGTTGCCTTATGCAATTTGTGTTGTATGTAA

Protein sequence

>MsG0480021830.01.T01

MLVVSSPSAVEDCLSKNDITFANRTSHTLAGKYLNYNNTALGFSPYGELHRKLRRLTTSELFSTNRLAMFTKVREEEVQLLVKQIFEGCKGQLLSRVDLKRKCLELSFNIMLRVISGKRYYGEDAVALEGKEFQILMNEYVELLGNGNLNDCFPILKWIDFQGKKEKMINLMKKMDSFLQRILDEKRRNWSNDQKNMTLIDVMLDLQQKEPEFYTHEIVKGVVLVILVAGSEPSATTMEWALSLLLNHPETMNKVRAEIDTSVGQDKLVNESDASKLKYLQMVIMETLRLYPPAPLMLPHESSNDCNVCGFDIPKGTMLLVNLWALHRDPNLWKDPTRFVPERFEEGDLGGGEIYNMIPFGIGRRSCPGAALAKRFIGHAIGSLIQCFEWERIGDEEIDMNEGIGLTMPKVEFLVALCNLCCM*