AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048938.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048938.01.T01 MTR_8g085620 94.231 416 23 1 1 415 73 488 0.0 771
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048938.01.T01 AT1G55280 47.355 397 180 10 20 408 14 389 1.13e-107 323
MsG0080048938.01.T01 AT1G55280 47.355 397 180 10 20 408 59 434 3.24e-107 323

Find 7 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATTAGTATCAGAGAATT+TGG 0.170887 contig551end:+12981 None:intergenic
AAGGCACAAAATTCAGAATT+TGG 0.186607 contig551end:+13193 None:intergenic
TGCAATGCAATTCGTGCTTT+TGG 0.220214 contig551end:-13167 MsG0080048938.01.T01:exon
CACGAATTGCATTGCACAAA+AGG 0.384363 contig551end:+13174 None:intergenic
ACTTGAAATTCTTCTAGAAG+AGG 0.530331 contig551end:+13032 None:intergenic
AAGGTTCAGAGCTATAGCTA+TGG 0.534181 contig551end:-13139 MsG0080048938.01.T01:exon
TTGTGAATGAGTGAAGTTGA+AGG 0.568987 contig551end:+13090 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATAAAAGTACTTTATT+TGG + contig551end:11115-11134 None:intergenic 10.0%
!!! AAATATAGAAATTTAAAGTT+TGG + contig551end:12297-12316 None:intergenic 10.0%
!!! AAATATATGATTCAAAATTT+TGG - contig551end:10412-10431 MsG0080048938.01.T01:CDS 10.0%
!!! ATTAAAAATCTTAACTTTTA+AGG - contig551end:10278-10297 MsG0080048938.01.T01:CDS 10.0%
!!! ATTCTAGTATATATTTTTTT+TGG - contig551end:11607-11626 MsG0080048938.01.T01:intron 10.0%
!! TTTCAAAAATAAAATATGTG+AGG + contig551end:10636-10655 None:intergenic 15.0%
!!! ATTTGTTTTTGTTAAAGTAT+TGG - contig551end:10606-10625 MsG0080048938.01.T01:CDS 15.0%
!! AAAATTAGTATCAGAGAATT+TGG + contig551end:10222-10241 None:intergenic 20.0%
!! AACTTTCTAAATTGTTAACA+GGG - contig551end:11812-11831 MsG0080048938.01.T01:CDS 20.0%
!! ATAAATCCAAATCTTTATTC+AGG - contig551end:11333-11352 MsG0080048938.01.T01:intron 20.0%
!! ATATTATTAACCATGATTTC+AGG + contig551end:11989-12008 None:intergenic 20.0%
!! ATATTGTTTGAACATCAATT+TGG + contig551end:12152-12171 None:intergenic 20.0%
!! ATTTGGTTAATAGATATATC+AGG - contig551end:11863-11882 MsG0080048938.01.T01:CDS 20.0%
!! GTATATTAAATATTTCAGTG+TGG - contig551end:10711-10730 MsG0080048938.01.T01:CDS 20.0%
!! GTTAATAATATTCGAATTCA+TGG - contig551end:11998-12017 MsG0080048938.01.T01:intron 20.0%
!! TAAATCCAAATCTTTATTCA+GGG - contig551end:11334-11353 MsG0080048938.01.T01:intron 20.0%
!! TAACATTTCTGTTTAAAAAC+TGG + contig551end:11759-11778 None:intergenic 20.0%
!! TATTGTTTGAACATCAATTT+GGG + contig551end:12151-12170 None:intergenic 20.0%
!!! AAATTGTAACTTTTGTAACA+CGG + contig551end:10886-10905 None:intergenic 20.0%
!!! AATTTTGGAGGTATTTTTAT+TGG - contig551end:10427-10446 MsG0080048938.01.T01:CDS 20.0%
!!! TACATATAACAAATGACTTT+TGG + contig551end:11146-11165 None:intergenic 20.0%
!!! TATAGAAATTTAAAGTTTGG+AGG + contig551end:12294-12313 None:intergenic 20.0%
!!! TATATGATTCAAAATTTTGG+AGG - contig551end:10415-10434 MsG0080048938.01.T01:CDS 20.0%
!!! TCTTTTTTGAACAAACTTAT+AGG + contig551end:12624-12643 None:intergenic 20.0%
!!! TGATGTTCAAACAATATTTT+TGG - contig551end:12155-12174 MsG0080048938.01.T01:intron 20.0%
!!! TTAACTGTTCTCTTTATTTT+GGG - contig551end:10323-10342 MsG0080048938.01.T01:CDS 20.0%
!!! TTTAACTGTTCTCTTTATTT+TGG - contig551end:10322-10341 MsG0080048938.01.T01:CDS 20.0%
!!! TTTAGAGTTTGAAAAGATAA+CGG - contig551end:10903-10922 MsG0080048938.01.T01:intron 20.0%
! AAATTAATCACAAGCAACAA+AGG - contig551end:12882-12901 MsG0080048938.01.T01:intron 25.0%
! AAATTGTATTTCCTGACATT+TGG - contig551end:11725-11744 MsG0080048938.01.T01:CDS 25.0%
! ATAATATTCGAATTCATGGT+TGG - contig551end:12002-12021 MsG0080048938.01.T01:intron 25.0%
! ATTTGAACACTTGAAAATCA+AGG + contig551end:11948-11967 None:intergenic 25.0%
! ATTTGATGTTTGCCTATATA+TGG - contig551end:10532-10551 MsG0080048938.01.T01:CDS 25.0%
! CAACTTTCTAAATTGTTAAC+AGG - contig551end:11811-11830 MsG0080048938.01.T01:CDS 25.0%
! GAAGCTTGAAAAATTAATGT+TGG - contig551end:12345-12364 MsG0080048938.01.T01:intron 25.0%
! GAGTACTTAATGATTATAGT+TGG - contig551end:10735-10754 MsG0080048938.01.T01:CDS 25.0%
! GTTAATCACGTTTAAATTTG+TGG + contig551end:11926-11945 None:intergenic 25.0%
! TAACAGTCATAAATTCTGAA+TGG - contig551end:12451-12470 MsG0080048938.01.T01:intron 25.0%
! TAACGAAGAAATTAAGAAGT+GGG + contig551end:10254-10273 None:intergenic 25.0%
! TATTTAATATACCACTTGCT+AGG + contig551end:10703-10722 None:intergenic 25.0%
! TCATCATATATGCCATATAT+AGG + contig551end:10547-10566 None:intergenic 25.0%
! TGTTCAAATCTACATATAGT+TGG - contig551end:11959-11978 MsG0080048938.01.T01:CDS 25.0%
! TGTTTGTAGTTATTATTGTC+AGG - contig551end:10677-10696 MsG0080048938.01.T01:CDS 25.0%
! TTAACGAAGAAATTAAGAAG+TGG + contig551end:10255-10274 None:intergenic 25.0%
! TTCAGAATTTATGACTGTTA+AGG + contig551end:12451-12470 None:intergenic 25.0%
!! AAGGTTTAGTTTCACTTAAA+TGG - contig551end:10297-10316 MsG0080048938.01.T01:CDS 25.0%
!! ATTCCAACTATGATATCTTT+TGG + contig551end:13029-13048 None:intergenic 25.0%
!! TTCTCTGATACTAATTTTCA+AGG - contig551end:10224-10243 MsG0080048938.01.T01:CDS 25.0%
!!! GTTGATGAATTCATTTTTGA+GGG - contig551end:11530-11549 MsG0080048938.01.T01:intron 25.0%
!!! TGATTATAGTTGGTTAGTTT+TGG - contig551end:10745-10764 MsG0080048938.01.T01:CDS 25.0%
!!! TGTTGATGAATTCATTTTTG+AGG - contig551end:11529-11548 MsG0080048938.01.T01:intron 25.0%
AAATACTTTATCTTCCCTTG+AGG - contig551end:11307-11326 MsG0080048938.01.T01:intron 30.0%
AACGAAGAAATTAAGAAGTG+GGG + contig551end:10253-10272 None:intergenic 30.0%
AAGACCATGCTAATATAAAC+CGG + contig551end:11041-11060 None:intergenic 30.0%
AAGGCACAAAATTCAGAATT+TGG + contig551end:10010-10029 None:intergenic 30.0%
AATATAAGTGACTTCAATGC+TGG - contig551end:11389-11408 MsG0080048938.01.T01:intron 30.0%
AATATTTACTCCAAGAAGCA+TGG + contig551end:11087-11106 None:intergenic 30.0%
ACACCAAAAGATATCATAGT+TGG - contig551end:13023-13042 MsG0080048938.01.T01:exon 30.0%
ACAGCACTTCAAAAAATTTG+AGG + contig551end:11704-11723 None:intergenic 30.0%
AGATATCATAGTTGGAATGA+TGG - contig551end:13031-13050 MsG0080048938.01.T01:exon 30.0%
ATATAGGCAAACATCAAATC+AGG + contig551end:10531-10550 None:intergenic 30.0%
CAGCACTTCAAAAAATTTGA+GGG + contig551end:11703-11722 None:intergenic 30.0%
CATTTAAGCCTATAACACTT+GGG - contig551end:13090-13109 MsG0080048938.01.T01:exon 30.0%
GACTTCAAAATTGAAGGTTA+AGG + contig551end:11659-11678 None:intergenic 30.0%
GATATACTTCATTTCCAAAG+AGG - contig551end:11503-11522 MsG0080048938.01.T01:intron 30.0%
GATATCATAGTTGGAATGAT+GGG - contig551end:13032-13051 MsG0080048938.01.T01:exon 30.0%
GCATTATTTAGAGGATTGAA+GGG - contig551end:12915-12934 MsG0080048938.01.T01:intron 30.0%
GTAGTTCAATAAGTAGTTAG+TGG + contig551end:12072-12091 None:intergenic 30.0%
TAAAGGGACTTCAAAATTGA+AGG + contig551end:11665-11684 None:intergenic 30.0%
TAGGCATAACTCAATACAAA+TGG - contig551end:13190-13209 MsG0080048938.01.T01:exon 30.0%
TGCATTATTTAGAGGATTGA+AGG - contig551end:12914-12933 MsG0080048938.01.T01:intron 30.0%
! AATATATGATGGAATCCTAG+TGG + contig551end:12231-12250 None:intergenic 30.0%
! ACTTGAAATTCTTCTAGAAG+AGG + contig551end:10171-10190 None:intergenic 30.0%
! ATATATGATGGAATCCTAGT+GGG + contig551end:12230-12249 None:intergenic 30.0%
! CAAACAACTTTGAAAAGAGT+AGG + contig551end:10663-10682 None:intergenic 30.0%
! CTTGTGATTAATTTTGAACC+TGG + contig551end:12876-12895 None:intergenic 30.0%
! GAAGACAGATGTTGATTAAA+GGG + contig551end:11681-11700 None:intergenic 30.0%
! GCTTCTTGGAGTAAATATTT+TGG - contig551end:11088-11107 MsG0080048938.01.T01:intron 30.0%
!! AGGAAGCTTTTTAAGCAATT+TGG - contig551end:10451-10470 MsG0080048938.01.T01:CDS 30.0%
!! GGAAGCTTTTTAAGCAATTT+GGG - contig551end:10452-10471 MsG0080048938.01.T01:CDS 30.0%
!! GTTAAAAGAAGCGTTACATT+TGG - contig551end:11846-11865 MsG0080048938.01.T01:CDS 30.0%
!!! TTGGAGGTATTTTTATTGGA+AGG - contig551end:10431-10450 MsG0080048938.01.T01:CDS 30.0%
AAATGACATTGATATGCCTC+TGG + contig551end:12205-12224 None:intergenic 35.0%
ATACTCTTCTTCTTCCTCTA+AGG - contig551end:12397-12416 MsG0080048938.01.T01:intron 35.0%
ATCTTTATTCAGGGTCAAGT+TGG - contig551end:11343-11362 MsG0080048938.01.T01:intron 35.0%
ATGAATTATCGACACAAGCA+CGG + contig551end:11189-11208 None:intergenic 35.0%
ATGTAAAGTTTCTGTGGTGT+TGG - contig551end:13064-13083 MsG0080048938.01.T01:exon 35.0%
ATTCATCAACAGAACCTCTT+TGG + contig551end:11520-11539 None:intergenic 35.0%
ATTTGAGCCATATAAGTTGC+TGG + contig551end:11372-11391 None:intergenic 35.0%
ATTTGGATTTATCCTCCTCA+AGG + contig551end:11325-11344 None:intergenic 35.0%
CAAACATGTACTCAGTACTT+TGG - contig551end:10960-10979 MsG0080048938.01.T01:intron 35.0%
CACTGGTATTCTCTTCAATA+TGG + contig551end:11450-11469 None:intergenic 35.0%
CTCTAGTGATACACTATGTT+AGG - contig551end:13171-13190 MsG0080048938.01.T01:exon 35.0%
CTTGACCCTGAATAAAGATT+TGG + contig551end:11342-11361 None:intergenic 35.0%
GCATTTAAGCCTATAACACT+TGG - contig551end:13089-13108 MsG0080048938.01.T01:exon 35.0%
GGAACTGATGCATTATTTAG+AGG - contig551end:12906-12925 MsG0080048938.01.T01:intron 35.0%
GTCGATAATTCATAGCTAAC+TGG - contig551end:11196-11215 MsG0080048938.01.T01:intron 35.0%
GTGTATAATTACATGTCACC+AGG + contig551end:13125-13144 None:intergenic 35.0%
GTTAGGTCTTAATTCCAACA+TGG + contig551end:12574-12593 None:intergenic 35.0%
TACTGAGTACATGTTTGGAT+TGG + contig551end:10957-10976 None:intergenic 35.0%
TATGTAATCAGTCTCATGTC+TGG - contig551end:11160-11179 MsG0080048938.01.T01:intron 35.0%
TCCAAAAATTGCAAGACTTG+AGG - contig551end:11553-11572 MsG0080048938.01.T01:intron 35.0%
TCTTGCATGTAAAGTTTCTG+TGG - contig551end:13058-13077 MsG0080048938.01.T01:exon 35.0%
TTAATCACAAGCAACAAAGG+AGG - contig551end:12885-12904 MsG0080048938.01.T01:intron 35.0%
TTAATCAGTTCCATGCTTCT+TGG - contig551end:11074-11093 MsG0080048938.01.T01:intron 35.0%
TTGGGACAGCTAATATATGA+TGG + contig551end:12242-12261 None:intergenic 35.0%
TTGGTTACCAGCAACTTATA+TGG - contig551end:11362-11381 MsG0080048938.01.T01:intron 35.0%
TTGTCAAATCATGGCTGATT+TGG - contig551end:10492-10511 MsG0080048938.01.T01:CDS 35.0%
TTGTCACTGCATCAAACATA+AGG - contig551end:12315-12334 MsG0080048938.01.T01:intron 35.0%
TTGTGAATGAGTGAAGTTGA+AGG + contig551end:10113-10132 None:intergenic 35.0%
TTTGGATTTATCCTCCTCAA+GGG + contig551end:11324-11343 None:intergenic 35.0%
TTTGGGAGTAATTTACAAGC+TGG - contig551end:10469-10488 MsG0080048938.01.T01:CDS 35.0%
TTTGTAGTGAAGTATAGCTC+AGG - contig551end:12978-12997 MsG0080048938.01.T01:exon 35.0%
! GAAGGAATCATAGTTTTCAC+AGG + contig551end:10095-10114 None:intergenic 35.0%
! GGAAGACAGATGTTGATTAA+AGG + contig551end:11682-11701 None:intergenic 35.0%
! GGTATAACTCTGAAAATCTG+TGG + contig551end:11228-11247 None:intergenic 35.0%
! TATATGATGGAATCCTAGTG+GGG + contig551end:12229-12248 None:intergenic 35.0%
!! CAAAGTACTGAGTACATGTT+TGG + contig551end:10962-10981 None:intergenic 35.0%
!! GATGCTGTGCTGATATTTTT+CGG - contig551end:12738-12757 MsG0080048938.01.T01:intron 35.0%
!! TAAGTGTGGCATTGACTTTA+GGG - contig551end:12946-12965 MsG0080048938.01.T01:intron 35.0%
!! TATTAGCATGGTCTTGTAGA+TGG - contig551end:11046-11065 MsG0080048938.01.T01:intron 35.0%
AACTTCTGCCCAAGTGTTAT+AGG + contig551end:13101-13120 None:intergenic 40.0%
AAGGTTCAGAGCTATAGCTA+TGG - contig551end:10061-10080 MsG0080048938.01.T01:exon 40.0%
ACAAGCTGGTTGTCAAATCA+TGG - contig551end:10483-10502 MsG0080048938.01.T01:CDS 40.0%
ACCGATCATTCTACAGAATC+AGG - contig551end:11479-11498 MsG0080048938.01.T01:intron 40.0%
AGGAACTGATCTATCCATGT+TGG - contig551end:12557-12576 MsG0080048938.01.T01:intron 40.0%
AGTTGGAACACCTGAAATCA+TGG - contig551end:11976-11995 MsG0080048938.01.T01:intron 40.0%
CACGAATTGCATTGCACAAA+AGG + contig551end:10029-10048 None:intergenic 40.0%
CATCTACGTCTATCAAGCAT+AGG + contig551end:11421-11440 None:intergenic 40.0%
CATCTCAAAGGAAGAAAGCA+TGG - contig551end:12677-12696 MsG0080048938.01.T01:intron 40.0%
CATGCTAATATAAACCGGCT+AGG + contig551end:11036-11055 None:intergenic 40.0%
CCAATACGACTTTCGAATTG+AGG - contig551end:12518-12537 MsG0080048938.01.T01:intron 40.0%
CCCTGATTCTGTAGAATGAT+CGG + contig551end:11483-11502 None:intergenic 40.0%
CCGATCATTCTACAGAATCA+GGG - contig551end:11480-11499 MsG0080048938.01.T01:intron 40.0%
CCTCAATTCGAAAGTCGTAT+TGG + contig551end:12521-12540 None:intergenic 40.0%
CGATCATTCTACAGAATCAG+GGG - contig551end:11481-11500 MsG0080048938.01.T01:intron 40.0%
CTATGCTTGATAGACGTAGA+TGG - contig551end:11419-11438 MsG0080048938.01.T01:intron 40.0%
GTCAATGCCACACTTACTAT+AGG + contig551end:12942-12961 None:intergenic 40.0%
GTTAGTGGTGAAGACAAGAT+CGG + contig551end:12057-12076 None:intergenic 40.0%
TACTTTATCTTCCCTTGAGG+AGG - contig551end:11310-11329 MsG0080048938.01.T01:intron 40.0%
TGCAAGACTTGAGGCTATTT+GGG - contig551end:11562-11581 MsG0080048938.01.T01:intron 40.0%
TGGAATGTGATCCAAATGTC+AGG + contig551end:11739-11758 None:intergenic 40.0%
TGTATCTGCTATTGTTGCAG+AGG - contig551end:12835-12854 MsG0080048938.01.T01:intron 40.0%
TTGCAAGACTTGAGGCTATT+TGG - contig551end:11561-11580 MsG0080048938.01.T01:intron 40.0%
! ATATGATGGAATCCTAGTGG+GGG + contig551end:12228-12247 None:intergenic 40.0%
! CAATGCAATTCGTGCTTTTG+GGG - contig551end:10035-10054 MsG0080048938.01.T01:exon 40.0%
! CTAGCCGGTTTATATTAGCA+TGG - contig551end:11034-11053 MsG0080048938.01.T01:intron 40.0%
! GCAATGCAATTCGTGCTTTT+GGG - contig551end:10034-10053 MsG0080048938.01.T01:exon 40.0%
! GCCTCAAGTCTTGCAATTTT+TGG + contig551end:11557-11576 None:intergenic 40.0%
! GGTTGGTTAAGCTCATTTGA+TGG - contig551end:12019-12038 MsG0080048938.01.T01:intron 40.0%
! TGCAATGCAATTCGTGCTTT+TGG - contig551end:10033-10052 MsG0080048938.01.T01:exon 40.0%
! TTGAAAAGATAACGGTGCCA+CGG - contig551end:10911-10930 MsG0080048938.01.T01:intron 40.0%
!! CTTTCTTCCTTTGAGATGAC+AGG + contig551end:12675-12694 None:intergenic 40.0%
!! GTAAGTGTGGCATTGACTTT+AGG - contig551end:12945-12964 MsG0080048938.01.T01:intron 40.0%
!! GTTTGGATTGGCAATGTGTT+TGG + contig551end:10945-10964 None:intergenic 40.0%
AACCTTGTGACTCAGCTTGA+AGG - contig551end:12591-12610 MsG0080048938.01.T01:intron 45.0%
ACCAACAAAGAAAGCGAACC+CGG + contig551end:12799-12818 None:intergenic 45.0%
ACCATCATTGCCAGAAGAAG+AGG - contig551end:12476-12495 MsG0080048938.01.T01:intron 45.0%
ACCTCTTCTTCTGGCAATGA+TGG + contig551end:12480-12499 None:intergenic 45.0%
ACCTTGTGACTCAGCTTGAA+GGG - contig551end:12592-12611 MsG0080048938.01.T01:intron 45.0%
AGACTTGAGGCTATTTGGGT+CGG - contig551end:11566-11585 MsG0080048938.01.T01:intron 45.0%
CCAAACTCCTGTCATCTCAA+AGG - contig551end:12665-12684 MsG0080048938.01.T01:intron 45.0%
CGAATTGAGGATGCATTGCT+TGG - contig551end:12531-12550 MsG0080048938.01.T01:intron 45.0%
CTCAAAAGCTTGAACCTAGC+CGG - contig551end:11019-11038 MsG0080048938.01.T01:intron 45.0%
CTCTCAGCTGGTGAAAATAC+CGG - contig551end:12777-12796 MsG0080048938.01.T01:intron 45.0%
GAAGGGTCCTATAGTAAGTG+TGG - contig551end:12932-12951 MsG0080048938.01.T01:intron 45.0%
GGTTCGCTTTCTTTGTTGGT+GGG - contig551end:12799-12818 MsG0080048938.01.T01:intron 45.0%
TATGGTGGTACCTCTTCTTC+TGG + contig551end:12489-12508 None:intergenic 45.0%
TCAAGCTGAGTCACAAGGTT+AGG + contig551end:12591-12610 None:intergenic 45.0%
TCGAAAGTCGTATTGGAAGC+CGG + contig551end:12514-12533 None:intergenic 45.0%
TCTCAGCTGGTGAAAATACC+GGG - contig551end:12778-12797 MsG0080048938.01.T01:intron 45.0%
TGACATTGATATGCCTCTGG+TGG + contig551end:12202-12221 None:intergenic 45.0%
TGATCGGTCATCAAACTCAC+TGG + contig551end:11467-11486 None:intergenic 45.0%
TGGCAAAACAACTGATGGTC+TGG + contig551end:11249-11268 None:intergenic 45.0%
TGTGCATACTTTCACGTCAG+AGG + contig551end:11273-11292 None:intergenic 45.0%
TTATTGTCAGGCCTAGCAAG+TGG - contig551end:10689-10708 MsG0080048938.01.T01:CDS 45.0%
! CTCAAAGGAAGAAAGCATGG+AGG - contig551end:12680-12699 MsG0080048938.01.T01:intron 45.0%
! GCTATTGTTGCAGAGGTATG+TGG - contig551end:12842-12861 MsG0080048938.01.T01:intron 45.0%
! GCTTTCTTTGTTGGTGGGAT+TGG - contig551end:12804-12823 MsG0080048938.01.T01:intron 45.0%
! GGTATTTTCACCAGCTGAGA+GGG + contig551end:12778-12797 None:intergenic 45.0%
! TCAATGTCATTTCCCCCACT+AGG - contig551end:12213-12232 MsG0080048938.01.T01:intron 45.0%
! TTCTTTGTTGGTGGGATTGG+AGG - contig551end:12807-12826 MsG0080048938.01.T01:intron 45.0%
! TTGTTGCAGAGGTATGTGGA+CGG - contig551end:12846-12865 MsG0080048938.01.T01:intron 45.0%
!! ATTCGTGCTTTTGGGGAAGA+AGG - contig551end:10042-10061 MsG0080048938.01.T01:exon 45.0%
!! ATTTGGGTCGGTGTTGATTC+AGG - contig551end:11578-11597 MsG0080048938.01.T01:intron 45.0%
!! CCTTTGAGATGACAGGAGTT+TGG + contig551end:12668-12687 None:intergenic 45.0%
!! CTTCTTCTTCCTCTAAGGTC+AGG - contig551end:12402-12421 MsG0080048938.01.T01:intron 45.0%
!! TGAAAAGATAACGGTGCCAC+GGG - contig551end:10912-10931 MsG0080048938.01.T01:intron 45.0%
!! TTCCTCTAAGGTCAGGTCAA+TGG - contig551end:12409-12428 MsG0080048938.01.T01:intron 45.0%
!! AAAATATAAATAATATATGT+TGG + contig551end:12261-12280 None:intergenic 5.0%
!! AAATATAAATAATATATGTT+GGG + contig551end:12260-12279 None:intergenic 5.0%
ACACTTGGGCAGAAGTTACC+TGG - contig551end:13104-13123 MsG0080048938.01.T01:exon 50.0%
ACCGGGTTCGCTTTCTTTGT+TGG - contig551end:12795-12814 MsG0080048938.01.T01:intron 50.0%
AGGTCAGGTCAATGGAGACT+AGG - contig551end:12417-12436 MsG0080048938.01.T01:intron 50.0%
CATACTTTCACGTCAGAGGC+TGG + contig551end:11269-11288 None:intergenic 50.0%
CTCCATTGACCTGACCTTAG+AGG + contig551end:12414-12433 None:intergenic 50.0%
GAGGCTGGCAAAACAACTGA+TGG + contig551end:11254-11273 None:intergenic 50.0%
GCATTGTGCAATTCCACCAG+AGG - contig551end:12186-12205 MsG0080048938.01.T01:intron 50.0%
GGGTTCGCTTTCTTTGTTGG+TGG - contig551end:12798-12817 MsG0080048938.01.T01:intron 50.0%
TATTGGAAGCCGGTGTATGG+TGG + contig551end:12504-12523 None:intergenic 50.0%
TCAATTGCTTCCCTCTCAGC+TGG - contig551end:12765-12784 MsG0080048938.01.T01:intron 50.0%
TCCCTTCAAGCTGAGTCACA+AGG + contig551end:12596-12615 None:intergenic 50.0%
TCGTATTGGAAGCCGGTGTA+TGG + contig551end:12507-12526 None:intergenic 50.0%
TGTGACTCAGCTTGAAGGGA+CGG - contig551end:12596-12615 MsG0080048938.01.T01:intron 50.0%
! CGGTATTTTCACCAGCTGAG+AGG + contig551end:12779-12798 None:intergenic 50.0%
! GAGGATGCATTGCTTGGTGA+AGG - contig551end:12537-12556 MsG0080048938.01.T01:intron 50.0%
!! GAAAAGATAACGGTGCCACG+GGG - contig551end:10913-10932 MsG0080048938.01.T01:intron 50.0%
!! GAAGAGGTACCACCATACAC+CGG - contig551end:12492-12511 MsG0080048938.01.T01:intron 50.0%
TGTGTTTGGCGAAATCCCCG+TGG + contig551end:10931-10950 None:intergenic 55.0%
!! AGGTATGTGGACGGATTGCC+AGG - contig551end:12855-12874 MsG0080048938.01.T01:intron 55.0%
Chromosome Type Strat End Strand Name
contig551end gene 10001 13221 10001 ID=MsG0080048938.01;
contig551end mRNA 10001 13221 10001 ID=MsG0080048938.01.T01;Parent=MsG0080048938.01
contig551end exon 10001 10798 10001 ID=MsG0080048938.01.T01.exon;Parent=MsG0080048938.01.T01
contig551end CDS 10086 10798 10086 ID=MsG0080048938.01.T01.cds;Parent=MsG0080048938.01.T01
contig551end CDS 11623 11991 11623 ID=MsG0080048938.01.T01.cds;Parent=MsG0080048938.01.T01
contig551end exon 11623 11991 11623 ID=MsG0080048938.01.T01.exon;Parent=MsG0080048938.01.T01
contig551end CDS 12977 13142 12977 ID=MsG0080048938.01.T01.cds;Parent=MsG0080048938.01.T01
contig551end exon 12977 13221 12977 ID=MsG0080048938.01.T01.exon;Parent=MsG0080048938.01.T01
Gene Sequence

>MsG0080048938.01.T01

ATGGAGACAATTCCTGTGAAAACTATGATTCCTTCAACTTCACTCATTCACAATCATGCTTTCAAAAGAAAATCAACAACACACACAACCTCTTCTAGAAGAATTTCAAGTTCAAGACATGTACGCTTTTCTATTCGTGCCAAATTCTCTGATACTAATTTTCAAGATTTTCAGAGTTATACCAGACCATCAGTTGTTTTGCCAGCCTCTGACGTGAAAGTATGCACAGATACATCATTAGAAAATACTTTATCTTCCCTTGAGGAGGATAAATCCAAATCTTTATTCAGGGTCAAGTTGGTTACCAGCAACTTATATGGCTCAAATATAAGTGACTTCAATGCTGGAATTCTCCTATGCTTGATAGACGTAGATGGAAATTCCATATTGAAGAGAATACCAGTGAGTTTGATGACCGATCATTCTACAGAATCAGGGGATATACTTCATTTCCAAAGAGGTTCTGTTGATGAATTCATTTTTGAGGGTCCAAAAATTGCAAGACTTGAGGCTATTTGGGTCGGTGTTGATTCAGGTCAATGGAGACTAGGAAATATCTCCTTAACAGTCATAAATTCTGAATGGCAACCATCATTGCCAGAAGAAGAGGTACCACCATACACCGGCTTCCAATACGACTTTCGAATTGAGGATGCATTGCTTGGTGAAGGAACTGATCTATCCATGTTGGAATTAAGACCTAACCTTGTGACTCAGCTTGAAGGGACGGATCCTATAAGTTTGTTCAAAAAAGAACTTTATGACAGTACATTGCTCCAAACTCCTGTCATCTCAAAGGAAGAAAGCATGGAGGAATACACAAATTTGAAATTCTCATTGCTATTTTATGATGCTGTGCTGATATTTTTCGGCACATCAATTGCTTCCCTCTCAGCTGGTGAAAATACCGGGTTCGCTTTCTTTGTTGGTGGGATTGGAGGCTTCTTGTATCTGCTATTGTTGCAGAGGTATGTGGACGGATTGCCAGGTTCAAAATTAATCACAAGCAACAAAGGAGGAACTGATGCATTATTTAGAGGATTGAAGGGTCCTATAGTAAGTGTGGCATTGACTTTAGGGTTTGCTGTATTTGTAGTGAAGTATAGCTCAGGAGATGATTTTGAAGTGTTCTTAACACCAAAAGATATCATAGTTGGAATGATGGGATTTCTTGCATGTAAAGTTTCTGTGGTGTTGGCTGCATTTAAGCCTATAACACTTGGGCAGAAGTTACCTGGTGACATGTAA

Protein sequence

>MsG0080048938.01.T01

METIPVKTMIPSTSLIHNHAFKRKSTTHTTSSRRISSSRHVRFSIRAKFSDTNFQDFQSYTRPSVVLPASDVKVCTDTSLENTLSSLEEDKSKSLFRVKLVTSNLYGSNISDFNAGILLCLIDVDGNSILKRIPVSLMTDHSTESGDILHFQRGSVDEFIFEGPKIARLEAIWVGVDSGQWRLGNISLTVINSEWQPSLPEEEVPPYTGFQYDFRIEDALLGEGTDLSMLELRPNLVTQLEGTDPISLFKKELYDSTLLQTPVISKEESMEEYTNLKFSLLFYDAVLIFFGTSIASLSAGENTGFAFFVGGIGGFLYLLLLQRYVDGLPGSKLITSNKGGTDALFRGLKGPIVSVALTLGFAVFVVKYSSGDDFEVFLTPKDIIVGMMGFLACKVSVVLAAFKPITLGQKLPGDM*