AlfalfaGEDB | MsG0480021938.01

M. sativa cultivar ZhongmuNo.1 / MsG0480021938.01

KEGG: K22794
GO: GO:0008152 GO:0016758
PFAM: PF00201

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021938.01.T01	XP_003607533.2	96.32	462	17	0	1	462	1	462	0	936

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021938.01.T01	A0A0G4DBR5	75.764	458	108	2	4	460	3	458	0	739

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021938.01.T01	G7JUZ0	96.320	462	17	0	1	462	1	462	0.0	936

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
MsG0380015399.01	MsG0480021938.01	PPI
MsG0480021938.01	MsG0480022255.01	PPI
MsG0480021938.01	MsG0480021937.01	PPI
MsG0480021938.01	MsG0280010407.01	PPI
MsG0480021938.01	MsG0680032206.01	PPI
MsG0480021938.01	MsG0880047502.01	PPI
MsG0480021938.01	MsG0680032202.01	PPI
MsG0480021938.01	MsG0280010406.01	PPI
MsG0480021938.01	MsG0680032201.01	PPI
MsG0480021938.01	MsG0480022257.01	PPI

Showing 1 to 10 of 21 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021938.01.T01	MTR_4g079270	96.320	462	17	0	1	462	1	462	0.0	936
MsG0480021938.01.T01	MTR_4g079250	89.610	462	48	0	1	462	1	462	0.0	876
MsG0480021938.01.T01	MTR_2g083490	60.954	461	176	3	1	459	1	459	0.0	576
MsG0480021938.01.T01	MTR_2g083380	60.304	461	179	3	1	459	18	476	0.0	566
MsG0480021938.01.T01	MTR_2g014900	57.048	454	192	2	7	459	6	457	0.0	563
MsG0480021938.01.T01	MTR_2g083480	59.649	456	180	3	1	454	1	454	0.0	562
MsG0480021938.01.T01	MTR_2g083430	59.130	460	184	3	1	458	1	458	0.0	550
MsG0480021938.01.T01	MTR_2g083390	57.391	460	168	4	1	458	1	434	0.0	536
MsG0480021938.01.T01	MTR_2g083420	56.522	460	172	4	1	458	1	434	0.0	532
MsG0480021938.01.T01	MTR_2g083360	45.595	454	140	7	6	458	27	374	5.25e-128	376

Showing 1 to 10 of 268 entries

Previous1 2 3 4 5…27Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021938.01.T01	AT5G54060	49.138	464	227	4	2	459	7	467	1.10e-156	452
MsG0480021938.01.T01	AT5G54010	45.197	458	242	3	5	462	3	451	4.95e-153	442
MsG0480021938.01.T01	AT4G27570	45.514	457	233	5	7	460	6	449	1.59e-150	436
MsG0480021938.01.T01	AT4G27560	45.098	459	236	4	7	462	6	451	1.69e-149	434
MsG0480021938.01.T01	AT5G53990	45.217	460	229	4	7	462	5	445	6.25e-147	427
MsG0480021938.01.T01	AT2G22930	45.374	454	225	4	7	456	5	439	1.99e-144	420
MsG0480021938.01.T01	AT3G29630	44.276	463	236	5	5	462	3	448	2.02e-141	413
MsG0480021938.01.T01	AT1G64910	43.363	452	241	4	7	458	5	441	1.27e-140	411
MsG0480021938.01.T01	AT1G64920	43.860	456	237	4	7	458	5	445	1.54e-138	405
MsG0480021938.01.T01	AT4G09500	43.392	454	234	5	7	456	5	439	1.51e-136	400

Showing 1 to 10 of 132 entries

Previous1 2 3 4 5…14Next

Find 92 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAACTTGAAAGTTGGTG+TGG	0.672740	4:-66182716	MsG0480021938.01.T01:CDS
AAATCATAGAAAACAATGTG+AGG	0.663978	4:+66183546	None:intergenic
AACAAACCGGTTCTTACTTC+AGG	0.319890	4:-66183174	MsG0480021938.01.T01:CDS
AAGACATGCAGAGAAATTGA+AGG	0.536699	4:-66183228	MsG0480021938.01.T01:CDS
AAGCTTCAAGAGATTGTTGA+GGG	0.510278	4:-66182517	MsG0480021938.01.T01:CDS
AATATTGAATGCTAGGATGA+TGG	0.436105	4:-66182740	MsG0480021938.01.T01:CDS
AATATTTGGTCACCAACATT+TGG	0.377355	4:+66182757	None:intergenic
AATGTATCCATGGTTTGCAA+TGG	0.566658	4:-66183844	MsG0480021938.01.T01:CDS
AATTGAGGGTGGAGATTGAA+TGG	0.406509	4:+66183723	None:intergenic
AATTTGGATTGTGCTGATTT+AGG	0.284535	4:+66183750	None:intergenic

Showing 1 to 10 of 92 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATATTGAATGCTAGGATGA+TGG	-	Chr4:66183640-66183659	MsG0480021938.01.T01:CDS	30.0%
AATATTTGGTCACCAACATT+TGG	+	Chr4:66183626-66183645	None:intergenic	30.0%
ACAGAAACAGTTTAACAAAC+CGG	-	Chr4:66183193-66183212	MsG0480021938.01.T01:CDS	30.0%
AGGTTGCATTAGATCAAATT+CGG	+	Chr4:66182985-66183004	None:intergenic	30.0%
ATATTGAATGCTAGGATGAT+GGG	-	Chr4:66183641-66183660	MsG0480021938.01.T01:CDS	30.0%
ATATTTCAAGAACTGATGCT+TGG	-	Chr4:66183359-66183378	MsG0480021938.01.T01:CDS	30.0%
ATGAAATCAGTAAGACAGTA+AGG	-	Chr4:66183765-66183784	MsG0480021938.01.T01:CDS	30.0%
ATTGGTGAATAAGTGTCAAT+TGG	-	Chr4:66183592-66183611	MsG0480021938.01.T01:CDS	30.0%
GCAAACAAACTTGCAAAAAA+AGG	-	Chr4:66182585-66182604	MsG0480021938.01.T01:CDS	30.0%
TAAAAGTGATTAATTGAGGG+TGG	+	Chr4:66182671-66182690	None:intergenic	30.0%

Showing 1 to 10 of 110 entries

Previous1 2 3 4 5…11Next

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	66182507	66183895	66182507	ID=MsG0480021938.01;Name=MsG0480021938.01
Chr4	mRNA	66182507	66183895	66182507	ID=MsG0480021938.01.T01;Parent=MsG0480021938.01;Name=MsG0480021938.01.T01;_AED=0.47;_eAED=0.47;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|462
Chr4	exon	66182507	66183895	66182507	ID=MsG0480021938.01.T01:exon:8025;Parent=MsG0480021938.01.T01
Chr4	CDS	66182507	66183895	66182507	ID=MsG0480021938.01.T01:cds;Parent=MsG0480021938.01.T01

Gene Sequence

>MsG0480021938.01.T01

ATGGATTCATCATCTCCTTTACACATAGCAATGTATCCATGGTTTGCAATGGGCCACCAAACTCCATTCCTTCACCTAGCAAACAAACTTGCAAAAAAAGGTCACAAAATCACCTTTTTCACACCTAAATCAGCACAATCCAAATTAGAACCATTCAATCTCCACCCTCAATTAATCACTTTTATCACCATCAAAGTTCCTCATGTTGAAGGTCTCCCTCCCAATGCAGAAACAACAGCTGATGTCCCTTATCCTTTACATCCACACATCATGACAGCCATGGACCTTACTCAACCTGACATTGAAACTCATCTCACAAATCTCAAACCTCACATTGTTTTCTATGATTTCACACATTGGATTCCATCTATAACCAAGCGTTTAGGCATCAAAGCTTTTCATTATTGCATTATTAGTTCAATCATGATTGGTTACACTCTAGCACCAGCTAGATATTCACAGGGTAAAGATTTAACCGAATTTGATCTAATGCAACCTCCTTCTGGTTACCCTGGTTCATCAATCAAGCTTCATATTCATGAAGCAAAAGCTTTTGCTGCTATGAGGAAAAACACTTATGGTAGCAATATTCTTTTCTATGATCGACAAGCCATTGCTTTAAATAAAGCTGATGCATTAGGATACAAGACATGCAGAGAAATTGAAGGACCTTATCTTGATTACATACAGAAACAGTTTAACAAACCGGTTCTTACTTCAGGACCAGTTTTACCGATACTTGAAAACTCAAATTATGTTTTGGATGAAAAATGGGCTACTTGGCTTGGTAGATTCAAAACAGATTCAGTTGTTTATTGTTGTTTTGGAAGTGAATGTGTTTTAAAGCCAAATATATTTCAAGAACTGATGCTTGGTCTTGATATGACTGGTATGCCATTTTTTGCAGCATTGAAACCTCCTTTTGGATTCGAAACAATTGAAGAAGCATTGCCAGAAGGGTTTTCAGAAAGGGTTGAAGGAAGAGGTGTTGTTTATGGTGGTTGGGTTCAGCAACAATTGATTTTGGAACATCCTTCTGTGGGATGTTTCATTACACATTGTGGTTCAGGTTCTTTATCAGAGGCATTGGTGAATAAGTGTCAATTGGTTTTGTTGCCAAATGTTGGTGACCAAATATTGAATGCTAGGATGATGGGAAACAACTTGAAAGTTGGTGTGGAAGTTGAGAAAGGTGAAGATGGATTATATACTAAGGATAATGTTTGTAAAGCGGTGAGCATTGTGATGAATGATGAGGATGAAATCAGTAAGACAGTAAGGGCTAATCATGCTAAGATTAGAGAGATGTTGCTTAATAAAGATCTTGAGTCATCTTATATTGATAACTTCTGCATGAAGCTTCAAGAGATTGTTGAGGGAAAAAATTAA

Protein sequence

>MsG0480021938.01.T01

MDSSSPLHIAMYPWFAMGHQTPFLHLANKLAKKGHKITFFTPKSAQSKLEPFNLHPQLITFITIKVPHVEGLPPNAETTADVPYPLHPHIMTAMDLTQPDIETHLTNLKPHIVFYDFTHWIPSITKRLGIKAFHYCIISSIMIGYTLAPARYSQGKDLTEFDLMQPPSGYPGSSIKLHIHEAKAFAAMRKNTYGSNILFYDRQAIALNKADALGYKTCREIEGPYLDYIQKQFNKPVLTSGPVLPILENSNYVLDEKWATWLGRFKTDSVVYCCFGSECVLKPNIFQELMLGLDMTGMPFFAALKPPFGFETIEEALPEGFSERVEGRGVVYGGWVQQQLILEHPSVGCFITHCGSGSLSEALVNKCQLVLLPNVGDQILNARMMGNNLKVGVEVEKGEDGLYTKDNVCKAVSIVMNDEDEISKTVRANHAKIREMLLNKDLESSYIDNFCMKLQEIVEGKN*