AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022251.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022251.01.T01 MTR_4g082640 90.625 128 2 1 1 118 1 128 7.42e-76 238
MsG0480022251.01.T01 MTR_4g082640 85.366 82 11 1 115 195 230 311 1.76e-37 136
MsG0480022251.01.T01 MTR_5g043560 63.158 133 33 4 1 118 1 132 6.91e-44 153
MsG0480022251.01.T01 MTR_5g043560 71.951 82 22 1 115 195 234 315 4.07e-31 119
MsG0480022251.01.T01 MTR_5g043560 63.158 133 33 4 1 118 1 132 8.98e-44 153
MsG0480022251.01.T01 MTR_5g043560 71.951 82 22 1 115 195 234 315 4.54e-31 119
MsG0480022251.01.T01 MTR_4g008800 87.755 49 6 0 147 195 69 117 2.88e-22 89.4
MsG0480022251.01.T01 MTR_6g025065 87.234 47 6 0 149 195 76 122 6.03e-20 82.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022251.01.T01 AT1G69340 62.016 129 34 4 4 118 7 134 1.03e-37 137
MsG0480022251.01.T01 AT1G69340 59.756 82 32 1 115 195 236 317 1.09e-23 98.2
MsG0480022251.01.T01 AT1G69340 62.016 129 34 4 4 118 7 134 1.03e-37 137
MsG0480022251.01.T01 AT1G69340 59.756 82 32 1 115 195 236 317 1.09e-23 98.2

Find 54 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTCCACTTTACTTTCCC+CGG 0.349040 4:+70110246 MsG0480022251.01.T01:CDS
CAATCGTTAGGGTATGAAAT+TGG 0.351317 4:+70106586 MsG0480022251.01.T01:CDS
ATTGGAGATTCTCCGTTGTC+TGG 0.418010 4:+70106604 MsG0480022251.01.T01:CDS
GAATTAATTTCATGATCAAC+AGG 0.421842 4:-70106694 None:intergenic
CCAGCTGCATCATGCAATCC+AGG 0.436979 4:-70108319 None:intergenic
AATGATACCGATCAATCGTT+AGG 0.449853 4:+70106574 MsG0480022251.01.T01:CDS
GTCAAAACTTCCTGCAGATG+TGG 0.460157 4:+70110295 MsG0480022251.01.T01:CDS
CTTGCTCCTCATGTTTATCC+CGG 0.463909 4:-70110265 None:intergenic
TTAATTCGAGGATTTATTTG+TGG 0.468862 4:+70106710 MsG0480022251.01.T01:CDS
GATGAAGCACACAGCAGCCC+TGG 0.474784 4:+70108301 MsG0480022251.01.T01:CDS
TTGCATGATGCAGCTGGACC+TGG 0.478289 4:+70108325 MsG0480022251.01.T01:CDS
GATCCTTTAGCATCCGCGTC+AGG 0.481693 4:+70106640 MsG0480022251.01.T01:CDS
GACGCGGATGCTAAAGGATC+AGG 0.482356 4:-70106637 None:intergenic
GGAATATCAACTCCAGCATC+AGG 0.487530 4:-70110398 None:intergenic
TTGCTCCTCATGTTTATCCC+GGG 0.492055 4:-70110264 None:intergenic
TCCTGTCAGCGATATTAGCC+TGG 0.497488 4:+70110418 MsG0480022251.01.T01:CDS
TGCAGAAGAATGTGCGACTC+TGG 0.505405 4:+70108351 MsG0480022251.01.T01:CDS
TTACCGATCATGCGAATGAC+AGG 0.506463 4:+70109728 MsG0480022251.01.T01:CDS
TTGATCATGAAATTAATTCG+AGG 0.509384 4:+70106698 MsG0480022251.01.T01:CDS
GCTCCTGACGCGGATGCTAA+AGG 0.512751 4:-70106643 None:intergenic
CGAGGATTTATTTGTGGCGA+GGG 0.521854 4:+70106716 MsG0480022251.01.T01:CDS
GCTTCCACTTTACTTTCCCC+GGG 0.529006 4:+70110247 MsG0480022251.01.T01:CDS
TCAAAACTTCCTGCAGATGT+GGG 0.534452 4:+70110296 MsG0480022251.01.T01:CDS
GTTTCAAGATCACCTGATGC+TGG 0.535866 4:+70110386 MsG0480022251.01.T01:CDS
CCGCGAGCTGAAACAGCTAC+AGG 0.538151 4:-70106490 None:intergenic
ATGGAAGTACGTCCGTGTCT+AGG 0.539065 4:+70106668 MsG0480022251.01.T01:CDS
TTCATACCCTAACGATTGAT+CGG 0.543467 4:-70106581 None:intergenic
ATGATACCGATCAATCGTTA+GGG 0.545896 4:+70106575 MsG0480022251.01.T01:CDS
CCTGGATTGCATGATGCAGC+TGG 0.546778 4:+70108319 MsG0480022251.01.T01:CDS
GCACCTGTCATTCGCATGAT+CGG 0.552417 4:-70109731 None:intergenic
GCATCCGCGTCAGGAGCAGA+TGG 0.575566 4:+70106649 MsG0480022251.01.T01:CDS
AGCATCACCTCAAGATTCCA+CGG 0.577692 4:-70106742 None:intergenic
ACCAGGCTAATATCGCTGAC+AGG 0.580629 4:-70110419 None:intergenic
TGCTCCTCATGTTTATCCCG+GGG 0.594201 4:-70110263 None:intergenic
AAATTACTGACTTTCGAACC+AGG 0.597682 4:-70110436 None:intergenic
TTATCCCGGGGAAAGTAAAG+TGG 0.601369 4:-70110251 None:intergenic
CCTGTAGCTGTTTCAGCTCG+CGG 0.601765 4:+70106490 MsG0480022251.01.T01:CDS
GCACATTCTTCTGCAAGACC+AGG 0.602423 4:-70108343 None:intergenic
CGTTAGATCAAGTTCCGCGA+TGG 0.602596 4:+70106551 MsG0480022251.01.T01:CDS
AGGGAATCCGTGGAATCTTG+AGG 0.605567 4:+70106735 MsG0480022251.01.T01:CDS
TCGAGGATTTATTTGTGGCG+AGG 0.606553 4:+70106715 MsG0480022251.01.T01:CDS
CTTTCCCCGGGATAAACATG+AGG 0.607356 4:+70110259 MsG0480022251.01.T01:CDS
CAAAACTTCCTGCAGATGTG+GGG 0.608424 4:+70110297 MsG0480022251.01.T01:CDS
GTAGCTGTTTCAGCTCGCGG+TGG 0.616819 4:+70106493 MsG0480022251.01.T01:CDS
ATTTGTGGCGAGGGAATCCG+TGG 0.620504 4:+70106725 MsG0480022251.01.T01:CDS
GAGTCTCCACTGTCATCAGT+AGG 0.621529 4:-70106520 None:intergenic
CAGCTGCATCATGCAATCCA+GGG 0.623599 4:-70108318 None:intergenic
GGAGAAACACTGGAATGCAT+AGG 0.626413 4:+70106467 None:intergenic
ACTTCCATCTGCTCCTGACG+CGG 0.636446 4:-70106653 None:intergenic
GGAAAATATGAACCAGACAA+CGG 0.661965 4:-70106616 None:intergenic
AAAACTTCCTGCAGATGTGG+GGG 0.663788 4:+70110298 MsG0480022251.01.T01:CDS
GGATTACCTACTGATGACAG+TGG 0.699361 4:+70106514 MsG0480022251.01.T01:CDS
ATCAACAGGAAACCTAGACA+CGG 0.705684 4:-70106680 None:intergenic
TGATCGGTATCATTCCATCG+CGG 0.808986 4:-70106565 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAAAGAAAACAAATTT+CGG + Chr4:70109592-70109611 MsG0480022251.01.T01:intron 10.0%
!!! TTGTATTTTTATTATTATTG+TGG + Chr4:70108480-70108499 MsG0480022251.01.T01:intron 10.0%
!! AACAACTTATATAAACAATT+TGG - Chr4:70109212-70109231 None:intergenic 15.0%
!! ACAACTTATATAAACAATTT+GGG - Chr4:70109211-70109230 None:intergenic 15.0%
!! TTTAATACTTATTAAGTATC+AGG + Chr4:70108156-70108175 MsG0480022251.01.T01:intron 15.0%
!!! AACTTTATTTATTAAGAAGA+AGG - Chr4:70107892-70107911 None:intergenic 15.0%
!!! TAATTTCTAGTATTTATGTA+TGG - Chr4:70109540-70109559 None:intergenic 15.0%
!! AAAAGCAGAAAATAACATAA+CGG + Chr4:70110021-70110040 MsG0480022251.01.T01:intron 20.0%
!! ACTAAGAAAACATAATTCAT+GGG + Chr4:70109760-70109779 MsG0480022251.01.T01:intron 20.0%
!! ACTTGTTTAATAAGAAAATC+AGG + Chr4:70106962-70106981 MsG0480022251.01.T01:intron 20.0%
!! AGCTTGAAAAAGTAAATAAA+AGG - Chr4:70108712-70108731 None:intergenic 20.0%
!! ATAAGTATTAAATCAAGAGA+TGG - Chr4:70108148-70108167 None:intergenic 20.0%
!! ATATACTATATACATTCCAT+AGG - Chr4:70109873-70109892 None:intergenic 20.0%
!! ATGTTCAAAAGTCATAATTA+TGG + Chr4:70107075-70107094 MsG0480022251.01.T01:intron 20.0%
!! CAACTTATATAAACAATTTG+GGG - Chr4:70109210-70109229 None:intergenic 20.0%
!! TAAATTCAATTTCCATGATA+TGG - Chr4:70109480-70109499 None:intergenic 20.0%
!! TAAGTATTAAATCAAGAGAT+GGG - Chr4:70108147-70108166 None:intergenic 20.0%
!! TATACTATATACATTCCATA+GGG - Chr4:70109872-70109891 None:intergenic 20.0%
!! TTAATATCTTGAGAATCATT+AGG - Chr4:70108119-70108138 None:intergenic 20.0%
!! TTGAAAAAGTAAATAAAAGG+AGG - Chr4:70108709-70108728 None:intergenic 20.0%
!! TTGTGTAATTTAAAAGTCTA+TGG + Chr4:70107740-70107759 MsG0480022251.01.T01:intron 20.0%
!! TTTAAAAGCAACAACTTTAT+AGG + Chr4:70107789-70107808 MsG0480022251.01.T01:intron 20.0%
!!! TATTGACACAAATTTTCTTA+TGG + Chr4:70110136-70110155 MsG0480022251.01.T01:intron 20.0%
!!! TGAAATGCAAATATGTTTTT+CGG + Chr4:70107764-70107783 MsG0480022251.01.T01:intron 20.0%
!!! TTTATTGATTGTTAGAATGT+AGG + Chr4:70106832-70106851 MsG0480022251.01.T01:intron 20.0%
! AAATCAATTAACGCAAATTG+TGG - Chr4:70109683-70109702 None:intergenic 25.0%
! AAATTGCAGATATCAAAGAA+AGG - Chr4:70110113-70110132 None:intergenic 25.0%
! AATACTTATTAAGTATCAGG+AGG + Chr4:70108159-70108178 MsG0480022251.01.T01:intron 25.0%
! AATCAATTAACGCAAATTGT+GGG - Chr4:70109682-70109701 None:intergenic 25.0%
! AATTTATTACGTAAAGATCG+TGG - Chr4:70109047-70109066 None:intergenic 25.0%
! ACAAGTAACTATAAATCTCA+TGG - Chr4:70108910-70108929 None:intergenic 25.0%
! ACGGATACTGAAATATATAA+AGG + Chr4:70110070-70110089 MsG0480022251.01.T01:intron 25.0%
! AGTTAACCTAACTAATGTAT+GGG - Chr4:70109454-70109473 None:intergenic 25.0%
! ATAAAGAAAACAAATTTCGG+AGG + Chr4:70109595-70109614 MsG0480022251.01.T01:intron 25.0%
! ATATCCATGTTATAAAACCA+TGG - Chr4:70106938-70106957 None:intergenic 25.0%
! ATTTATTGTAGCATTGCTAT+GGG + Chr4:70109309-70109328 MsG0480022251.01.T01:intron 25.0%
! CATAAAGACTTACATCTTAA+AGG + Chr4:70107603-70107622 MsG0480022251.01.T01:intron 25.0%
! GAATTAATTTCATGATCAAC+AGG - Chr4:70106697-70106716 None:intergenic 25.0%
! GACTAAGAAAACATAATTCA+TGG + Chr4:70109759-70109778 MsG0480022251.01.T01:intron 25.0%
! TAAAGAAAACAAATTTCGGA+GGG + Chr4:70109596-70109615 MsG0480022251.01.T01:intron 25.0%
! TAAGATGTAAGTCTTTATGA+TGG - Chr4:70107602-70107621 None:intergenic 25.0%
! TATTTATTGTAGCATTGCTA+TGG + Chr4:70109308-70109327 MsG0480022251.01.T01:intron 25.0%
! TGAAAAAGATATCAAAAGGA+AGG - Chr4:70109979-70109998 None:intergenic 25.0%
! TTAATTCGAGGATTTATTTG+TGG + Chr4:70106710-70106729 MsG0480022251.01.T01:CDS 25.0%
! TTCCTGAAAAAGATATCAAA+AGG - Chr4:70109983-70110002 None:intergenic 25.0%
! TTCCTTAAAAGAATATCCAT+AGG + Chr4:70107198-70107217 MsG0480022251.01.T01:intron 25.0%
! TTGATCATGAAATTAATTCG+AGG + Chr4:70106698-70106717 MsG0480022251.01.T01:CDS 25.0%
!! AAATTTTCTTATGGTTATGG+AGG + Chr4:70110145-70110164 MsG0480022251.01.T01:intron 25.0%
!! ATAATATCTTATTTCCTACC+TGG + Chr4:70108254-70108273 MsG0480022251.01.T01:intron 25.0%
!! ATAATTAACTTGAAGTCTTC+AGG - Chr4:70109844-70109863 None:intergenic 25.0%
!! CACAAATTTTCTTATGGTTA+TGG + Chr4:70110142-70110161 MsG0480022251.01.T01:intron 25.0%
!! TGAATTATGTTTTCTTAGTC+AGG - Chr4:70109759-70109778 None:intergenic 25.0%
!! TGATTTTCTATGTTACTAAG+TGG + Chr4:70109697-70109716 MsG0480022251.01.T01:intron 25.0%
!! TTACGTAATAAATTTTCTGC+AGG + Chr4:70109053-70109072 MsG0480022251.01.T01:intron 25.0%
!! TTCATTGTTATTATCGTAGA+TGG + Chr4:70107339-70107358 MsG0480022251.01.T01:intron 25.0%
!! TTCCTTTTGATATCTTTTTC+AGG + Chr4:70109978-70109997 MsG0480022251.01.T01:intron 25.0%
!!! GGTTGATATTTTTTTCAACA+TGG + Chr4:70110171-70110190 MsG0480022251.01.T01:intron 25.0%
!!! TACATACTTTTAATTTCCTG+TGG + Chr4:70108940-70108959 MsG0480022251.01.T01:intron 25.0%
!!! TTACAGTTTTTTGTTCTTGT+TGG + Chr4:70108787-70108806 MsG0480022251.01.T01:intron 25.0%
AAAGCAACAACTTTATAGGT+TGG + Chr4:70107793-70107812 MsG0480022251.01.T01:intron 30.0%
AGTATTTATGTATGGTGTGT+TGG - Chr4:70109532-70109551 None:intergenic 30.0%
AGTTAATTATCATGTCCCTA+TGG + Chr4:70109854-70109873 MsG0480022251.01.T01:intron 30.0%
ATAAATAACACAGAGTCCAA+AGG - Chr4:70110197-70110216 None:intergenic 30.0%
ATCAGTTCTGCAATTAATCA+CGG + Chr4:70108763-70108782 MsG0480022251.01.T01:intron 30.0%
ATGATTGTGCTAACTATAGA+GGG + Chr4:70107049-70107068 MsG0480022251.01.T01:intron 30.0%
ATGGTAGAATTGCTTATGAA+TGG - Chr4:70109810-70109829 None:intergenic 30.0%
CATATCAATATTATACGAGC+AGG + Chr4:70107157-70107176 MsG0480022251.01.T01:intron 30.0%
CTGCTCGTATAATATTGATA+TGG - Chr4:70107159-70107178 None:intergenic 30.0%
CTTAAAAGAATATCCATAGG+AGG + Chr4:70107201-70107220 MsG0480022251.01.T01:intron 30.0%
GAGTTAACCTAACTAATGTA+TGG - Chr4:70109455-70109474 None:intergenic 30.0%
TACCTAGTAAGAAAAGATTC+TGG + Chr4:70107689-70107708 MsG0480022251.01.T01:intron 30.0%
TAGGAATGTAGAGAACAAAT+TGG + Chr4:70106851-70106870 MsG0480022251.01.T01:intron 30.0%
TATCCATAGGAGGTAAAATA+TGG + Chr4:70107211-70107230 MsG0480022251.01.T01:intron 30.0%
TATGATTGTGCTAACTATAG+AGG + Chr4:70107048-70107067 MsG0480022251.01.T01:intron 30.0%
TCATTTCTTATGGCAGAATA+TGG + Chr4:70108279-70108298 MsG0480022251.01.T01:intron 30.0%
TCGACAAAGAAAAAGAAGTA+TGG - Chr4:70108873-70108892 None:intergenic 30.0%
TGCTTGATATTGGATGAAAA+TGG - Chr4:70107856-70107875 None:intergenic 30.0%
TTTATTGTAGCATTGCTATG+GGG + Chr4:70109310-70109329 MsG0480022251.01.T01:intron 30.0%
! AACCAGAATCTTTTCTTACT+AGG - Chr4:70107694-70107713 None:intergenic 30.0%
! ACTTCTTTTTCTTTGTCGAA+TGG + Chr4:70108874-70108893 MsG0480022251.01.T01:intron 30.0%
! AGAATCTTTTCTTACTAGGT+AGG - Chr4:70107690-70107709 None:intergenic 30.0%
! ATACCATATTTTACCTCCTA+TGG - Chr4:70107217-70107236 None:intergenic 30.0%
! ATATAAACAATTTGGGGCTA+TGG - Chr4:70109204-70109223 None:intergenic 30.0%
! ATTGTTATTATCGTAGATGG+AGG + Chr4:70107342-70107361 MsG0480022251.01.T01:intron 30.0%
! CAGAAAGAATTTTGTGACAA+TGG + Chr4:70107260-70107279 MsG0480022251.01.T01:intron 30.0%
! CTCCTATGGATATTCTTTTA+AGG - Chr4:70107203-70107222 None:intergenic 30.0%
! GAAGTAATTTTCAGCTTAAC+AGG - Chr4:70109904-70109923 None:intergenic 30.0%
! GAATCTTTTCTTACTAGGTA+GGG - Chr4:70107689-70107708 None:intergenic 30.0%
! GATCTTGAAACACTCTTTTT+AGG - Chr4:70110377-70110396 None:intergenic 30.0%
! TATAAACAATTTGGGGCTAT+GGG - Chr4:70109203-70109222 None:intergenic 30.0%
! TGTGTTGTTGCATTATTGAA+AGG + Chr4:70108840-70108859 MsG0480022251.01.T01:intron 30.0%
! TTATTACCCTCCTTATTTAC+TGG - Chr4:70108238-70108257 None:intergenic 30.0%
! TTGTTATTATCGTAGATGGA+GGG + Chr4:70107343-70107362 MsG0480022251.01.T01:intron 30.0%
! TTTTGACCCATACATTAGTT+AGG + Chr4:70109445-70109464 MsG0480022251.01.T01:intron 30.0%
!! AGCAACTCATTTTTCTGATA+TGG - Chr4:70109566-70109585 None:intergenic 30.0%
!! ATGTTGATAATATGTGAGCT+TGG + Chr4:70108419-70108438 MsG0480022251.01.T01:intron 30.0%
!! CCATTTGATTTTCCCAAAAA+AGG - Chr4:70107567-70107586 None:intergenic 30.0%
!! TGTTGATAATATGTGAGCTT+GGG + Chr4:70108420-70108439 MsG0480022251.01.T01:intron 30.0%
!!! ATTTTTTTCAACATGGCCTT+TGG + Chr4:70110178-70110197 MsG0480022251.01.T01:intron 30.0%
!!! CCTTTTTTGGGAAAATCAAA+TGG + Chr4:70107564-70107583 MsG0480022251.01.T01:intron 30.0%
!!! GAAACACTCTTTTTAGGTAA+AGG - Chr4:70110371-70110390 None:intergenic 30.0%
!!! GCGTTTTTTGTTTAGTTTGT+TGG + Chr4:70106800-70106819 MsG0480022251.01.T01:intron 30.0%
AATATCAAGCAACAGAACCA+CGG + Chr4:70107865-70107884 MsG0480022251.01.T01:intron 35.0%
AATGATACCGATCAATCGTT+AGG + Chr4:70106574-70106593 MsG0480022251.01.T01:CDS 35.0%
AATGCATCGTTAGTGTTAAC+AGG + Chr4:70108617-70108636 MsG0480022251.01.T01:intron 35.0%
AATTACTTCCAGATGGTTGA+TGG + Chr4:70109915-70109934 MsG0480022251.01.T01:intron 35.0%
ACAGTTGCTCATAGAAAAGT+GGG - Chr4:70107448-70107467 None:intergenic 35.0%
AGAATCATTAGGAAGATGGA+TGG - Chr4:70108108-70108127 None:intergenic 35.0%
AGCTGAAAATTACTTCCAGA+TGG + Chr4:70109908-70109927 MsG0480022251.01.T01:intron 35.0%
ATGATACCGATCAATCGTTA+GGG + Chr4:70106575-70106594 MsG0480022251.01.T01:CDS 35.0%
ATGCATCGTTAGTGTTAACA+GGG + Chr4:70108618-70108637 MsG0480022251.01.T01:intron 35.0%
ATGGATGACATGTTACTCTT+AGG + Chr4:70109934-70109953 MsG0480022251.01.T01:intron 35.0%
ATGGGGTTGTATTTATACAG+AGG + Chr4:70109327-70109346 MsG0480022251.01.T01:intron 35.0%
ATGGTACTTCAACAGCAATT+TGG - Chr4:70109102-70109121 None:intergenic 35.0%
CAATCGTTAGGGTATGAAAT+TGG + Chr4:70106586-70106605 MsG0480022251.01.T01:CDS 35.0%
CATAAGAAATGAAACCAGGT+AGG - Chr4:70108271-70108290 None:intergenic 35.0%
CTACCTGGTTTCATTTCTTA+TGG + Chr4:70108269-70108288 MsG0480022251.01.T01:intron 35.0%
CTTGAGAATCATTAGGAAGA+TGG - Chr4:70108112-70108131 None:intergenic 35.0%
GAATCATTAGGAAGATGGAT+GGG - Chr4:70108107-70108126 None:intergenic 35.0%
GCAAGGAAAAGACGAAAAAA+AGG - Chr4:70107924-70107943 None:intergenic 35.0%
GGAAAATATGAACCAGACAA+CGG - Chr4:70106619-70106638 None:intergenic 35.0%
TCCATGTTATAAAACCATGG+AGG - Chr4:70106935-70106954 None:intergenic 35.0%
TCTTCAGGATTCGTACATTA+TGG - Chr4:70109829-70109848 None:intergenic 35.0%
TGGTACTTCAACAGCAATTT+GGG - Chr4:70109101-70109120 None:intergenic 35.0%
TTCATACCCTAACGATTGAT+CGG - Chr4:70106584-70106603 None:intergenic 35.0%
TTCTTATGGTTATGGAGGTT+TGG + Chr4:70110150-70110169 MsG0480022251.01.T01:intron 35.0%
TTTATTAAGAAGAAGGACCG+TGG - Chr4:70107885-70107904 None:intergenic 35.0%
! AAGCACTTCAGTTGATTCTA+AGG + Chr4:70107012-70107031 MsG0480022251.01.T01:intron 35.0%
! ATAAACAATTTGGGGCTATG+GGG - Chr4:70109202-70109221 None:intergenic 35.0%
! ATTTTGCACTACTAGCACAA+CGG + Chr4:70110051-70110070 MsG0480022251.01.T01:intron 35.0%
! CAAAACATAATTTGTGCAGC+AGG - Chr4:70108989-70109008 None:intergenic 35.0%
! GACTGGAAAGCACAAAATAA+TGG - Chr4:70107545-70107564 None:intergenic 35.0%
! GATTTTACGCTCATCTATGA+TGG - Chr4:70110339-70110358 None:intergenic 35.0%
! TGATTTAGAATTCTCCTCCA+TGG + Chr4:70106918-70106937 MsG0480022251.01.T01:intron 35.0%
! TGATTTTCCCAAAAAAGGAC+TGG - Chr4:70107562-70107581 None:intergenic 35.0%
! TTCAGTTGATTCTAAGGACA+GGG + Chr4:70107018-70107037 MsG0480022251.01.T01:intron 35.0%
! TTTTCCAGTCAGTCTTCATT+TGG + Chr4:70107478-70107497 MsG0480022251.01.T01:intron 35.0%
! TTTTCTATGAGCAACTGTGT+TGG + Chr4:70107450-70107469 MsG0480022251.01.T01:intron 35.0%
!! AAATTACTGACTTTCGAACC+AGG - Chr4:70110439-70110458 None:intergenic 35.0%
!! ACATCTTAAAGGACTTGTTG+AGG + Chr4:70107614-70107633 MsG0480022251.01.T01:intron 35.0%
!!! TCCTCCATGGTTTTATAACA+TGG + Chr4:70106931-70106950 MsG0480022251.01.T01:intron 35.0%
AGGTTAACTCTGCCATATCA+TGG + Chr4:70109465-70109484 MsG0480022251.01.T01:intron 40.0%
ATCAACAGGAAACCTAGACA+CGG - Chr4:70106683-70106702 None:intergenic 40.0%
CACAGTTGCTCATAGAAAAG+TGG - Chr4:70107449-70107468 None:intergenic 40.0%
CCTACATGAAACAACATGCA+CGG - Chr4:70110225-70110244 None:intergenic 40.0%
CTGCCATAAGAAATGAAACC+AGG - Chr4:70108275-70108294 None:intergenic 40.0%
CTTTGTCGAATGGTGTTTGT+TGG + Chr4:70108884-70108903 MsG0480022251.01.T01:intron 40.0%
GAAAACAAATTTCGGAGGGA+AGG + Chr4:70109600-70109619 MsG0480022251.01.T01:intron 40.0%
GAAGATGGATGGGATTTATG+AGG - Chr4:70108097-70108116 None:intergenic 40.0%
GGAGAATTATCCACACTGTT+TGG + Chr4:70109074-70109093 MsG0480022251.01.T01:intron 40.0%
GGTACTTCAACAGCAATTTG+GGG - Chr4:70109100-70109119 None:intergenic 40.0%
GTACTGAGCTCCAGTAAATA+AGG + Chr4:70108225-70108244 MsG0480022251.01.T01:intron 40.0%
TATGGTGTGTTGGAACTTAG+TGG - Chr4:70109522-70109541 None:intergenic 40.0%
TATTCTCGAGCATCATATCC+AGG - Chr4:70108591-70108610 None:intergenic 40.0%
TCAAAACTTCCTGCAGATGT+GGG + Chr4:70110296-70110315 MsG0480022251.01.T01:CDS 40.0%
TCAACCAAATGAAGACTGAC+TGG - Chr4:70107485-70107504 None:intergenic 40.0%
TGAGCTCCAGTAAATAAGGA+GGG + Chr4:70108229-70108248 MsG0480022251.01.T01:intron 40.0%
TGTTGTAAACTCGACGAATG+AGG + Chr4:70106764-70106783 MsG0480022251.01.T01:intron 40.0%
TTATACGAGCAGGTCAGTTA+TGG + Chr4:70107167-70107186 MsG0480022251.01.T01:intron 40.0%
TTGTGACAATGGATAGCCTA+GGG + Chr4:70107271-70107290 MsG0480022251.01.T01:intron 40.0%
TTTGTGACAATGGATAGCCT+AGG + Chr4:70107270-70107289 MsG0480022251.01.T01:intron 40.0%
! CTTCAGTTGATTCTAAGGAC+AGG + Chr4:70107017-70107036 MsG0480022251.01.T01:intron 40.0%
! GCAACAACTTTATAGGTTGG+TGG + Chr4:70107796-70107815 MsG0480022251.01.T01:intron 40.0%
! GTGGTTCTGTTGCTTGATAT+TGG - Chr4:70107866-70107885 None:intergenic 40.0%
! TCAGTTGATTCTAAGGACAG+GGG + Chr4:70107019-70107038 MsG0480022251.01.T01:intron 40.0%
! TTTTCTTACTAGGTAGGGTC+AGG - Chr4:70107684-70107703 None:intergenic 40.0%
!!! GTGCTTTCCAGTCCTTTTTT+GGG + Chr4:70107552-70107571 MsG0480022251.01.T01:intron 40.0%
!!! TGTGCTTTCCAGTCCTTTTT+TGG + Chr4:70107551-70107570 MsG0480022251.01.T01:intron 40.0%
AAAACTTCCTGCAGATGTGG+GGG + Chr4:70110298-70110317 MsG0480022251.01.T01:CDS 45.0%
AAGCATTCTCTGCAGCAGTA+TGG - Chr4:70109121-70109140 None:intergenic 45.0%
AGCAGGAAGGTCATATGCAT+TGG - Chr4:70108672-70108691 None:intergenic 45.0%
AGCATCACCTCAAGATTCCA+CGG - Chr4:70106745-70106764 None:intergenic 45.0%
ATTGGAGATTCTCCGTTGTC+TGG + Chr4:70106604-70106623 MsG0480022251.01.T01:CDS 45.0%
CAAAACTTCCTGCAGATGTG+GGG + Chr4:70110297-70110316 MsG0480022251.01.T01:CDS 45.0%
CAGCAATCAAACTAGCAGGA+AGG - Chr4:70108685-70108704 None:intergenic 45.0%
CATCGTTAGTGTTAACAGGG+TGG + Chr4:70108621-70108640 MsG0480022251.01.T01:intron 45.0%
CATGTCATCCATCAACCATC+TGG - Chr4:70109926-70109945 None:intergenic 45.0%
CGAGGATTTATTTGTGGCGA+GGG + Chr4:70106716-70106735 MsG0480022251.01.T01:CDS 45.0%
CTAAAAGCTCCAGGCAAGAA+CGG - Chr4:70109157-70109176 None:intergenic 45.0%
CTGAGCTCCAGTAAATAAGG+AGG + Chr4:70108228-70108247 MsG0480022251.01.T01:intron 45.0%
CTTATAGCTACATGAGCAGC+AGG - Chr4:70109373-70109392 None:intergenic 45.0%
CTTGCTCCTCATGTTTATCC+CGG - Chr4:70110268-70110287 None:intergenic 45.0%
GGAATATCAACTCCAGCATC+AGG - Chr4:70110401-70110420 None:intergenic 45.0%
GGATTACCTACTGATGACAG+TGG + Chr4:70106514-70106533 MsG0480022251.01.T01:CDS 45.0%
GGGTGACAACTTTCATCTTG+TGG - Chr4:70107428-70107447 None:intergenic 45.0%
GTCAAAACTTCCTGCAGATG+TGG + Chr4:70110295-70110314 MsG0480022251.01.T01:CDS 45.0%
GTTTCAAGATCACCTGATGC+TGG + Chr4:70110386-70110405 MsG0480022251.01.T01:CDS 45.0%
TATCGTAGATGGAGGGAGTT+CGG + Chr4:70107350-70107369 MsG0480022251.01.T01:intron 45.0%
TCCTTGCTCTCGTATTACTG+CGG + Chr4:70107937-70107956 MsG0480022251.01.T01:intron 45.0%
TCGAGGATTTATTTGTGGCG+AGG + Chr4:70106715-70106734 MsG0480022251.01.T01:CDS 45.0%
TGATCGGTATCATTCCATCG+CGG - Chr4:70106568-70106587 None:intergenic 45.0%
TGCTTCCACTTTACTTTCCC+CGG + Chr4:70110246-70110265 MsG0480022251.01.T01:CDS 45.0%
TTACCGATCATGCGAATGAC+AGG + Chr4:70109728-70109747 MsG0480022251.01.T01:CDS 45.0%
TTATCCCGGGGAAAGTAAAG+TGG - Chr4:70110254-70110273 None:intergenic 45.0%
TTGCTCCTCATGTTTATCCC+GGG - Chr4:70110267-70110286 None:intergenic 45.0%
TTGTCAGCGAAGAAACTTCC+TGG + Chr4:70108570-70108589 MsG0480022251.01.T01:intron 45.0%
! CTTCCTGCTAGTTTGATTGC+TGG + Chr4:70108683-70108702 MsG0480022251.01.T01:intron 45.0%
! TAGTCGACAGTGGACTTCAA+AGG + Chr4:70109174-70109193 MsG0480022251.01.T01:intron 45.0%
!! CCGTGCATGTTGTTTCATGT+AGG + Chr4:70110222-70110241 MsG0480022251.01.T01:intron 45.0%
!! TTAAAATTAAAAATATTGAT+AGG - Chr4:70108020-70108039 None:intergenic 5.0%
AACATCTCACGTCAGACCAC+AGG - Chr4:70108959-70108978 None:intergenic 50.0%
ACCAGGCTAATATCGCTGAC+AGG - Chr4:70110422-70110441 None:intergenic 50.0%
ACCTTGGTCATGGTGCATGA+AGG + Chr4:70107297-70107316 MsG0480022251.01.T01:intron 50.0%
AGGCCAGCAATCAAACTAGC+AGG - Chr4:70108689-70108708 None:intergenic 50.0%
AGGGAATCCGTGGAATCTTG+AGG + Chr4:70106735-70106754 MsG0480022251.01.T01:CDS 50.0%
CAGCTGCATCATGCAATCCA+GGG - Chr4:70108321-70108340 None:intergenic 50.0%
CCTTGGTCATGGTGCATGAA+GGG + Chr4:70107298-70107317 MsG0480022251.01.T01:intron 50.0%
CGTTAGATCAAGTTCCGCGA+TGG + Chr4:70106551-70106570 MsG0480022251.01.T01:CDS 50.0%
CTACATGAGCAGCAGGTTCT+CGG - Chr4:70109366-70109385 None:intergenic 50.0%
CTTTCCCCGGGATAAACATG+AGG + Chr4:70110259-70110278 MsG0480022251.01.T01:CDS 50.0%
GAGTCTCCACTGTCATCAGT+AGG - Chr4:70106523-70106542 None:intergenic 50.0%
GCACATTCTTCTGCAAGACC+AGG - Chr4:70108346-70108365 None:intergenic 50.0%
GCACCTGTCATTCGCATGAT+CGG - Chr4:70109734-70109753 None:intergenic 50.0%
GCAGATGTGGGGGATGAAAA+TGG + Chr4:70110308-70110327 MsG0480022251.01.T01:CDS 50.0%
GCTTCCACTTTACTTTCCCC+GGG + Chr4:70110247-70110266 MsG0480022251.01.T01:CDS 50.0%
GGAGTTCGGAGGAAAAAGGA+AGG + Chr4:70107364-70107383 MsG0480022251.01.T01:intron 50.0%
TACATGAGCAGCAGGTTCTC+GGG - Chr4:70109365-70109384 None:intergenic 50.0%
TACTGCGGCTACTTGCAACT+GGG + Chr4:70107952-70107971 MsG0480022251.01.T01:intron 50.0%
TCATTGCTACCGTTCTTGCC+TGG + Chr4:70109145-70109164 MsG0480022251.01.T01:intron 50.0%
TCCTGTCAGCGATATTAGCC+TGG + Chr4:70110418-70110437 MsG0480022251.01.T01:CDS 50.0%
TGCAGAAGAATGTGCGACTC+TGG + Chr4:70108351-70108370 MsG0480022251.01.T01:CDS 50.0%
TGCTCCTCATGTTTATCCCG+GGG - Chr4:70110266-70110285 None:intergenic 50.0%
TTAACAGGGTGGATGTCGAC+AGG + Chr4:70108632-70108651 MsG0480022251.01.T01:intron 50.0%
TTACTGCGGCTACTTGCAAC+TGG + Chr4:70107951-70107970 MsG0480022251.01.T01:intron 50.0%
! ATGGAAGTACGTCCGTGTCT+AGG + Chr4:70106668-70106687 MsG0480022251.01.T01:CDS 50.0%
! CAATTTGGGGCCAAACAGTG+TGG - Chr4:70109087-70109106 None:intergenic 50.0%
! CACTGTCGACTAAAAGCTCC+AGG - Chr4:70109166-70109185 None:intergenic 50.0%
! CTGGAGCTTTTAGTCGACAG+TGG + Chr4:70109164-70109183 MsG0480022251.01.T01:intron 50.0%
! TTTTCATCCCCCACATCTGC+AGG - Chr4:70110308-70110327 None:intergenic 50.0%
AACTCGACGAATGAGGTGCG+TGG + Chr4:70106771-70106790 MsG0480022251.01.T01:intron 55.0%
ACATGAGCAGCAGGTTCTCG+GGG - Chr4:70109364-70109383 None:intergenic 55.0%
ACTTCCATCTGCTCCTGACG+CGG - Chr4:70106656-70106675 None:intergenic 55.0%
AGGGTGGATGTCGACAGGAA+TGG + Chr4:70108637-70108656 MsG0480022251.01.T01:intron 55.0%
ATTTGTGGCGAGGGAATCCG+TGG + Chr4:70106725-70106744 MsG0480022251.01.T01:CDS 55.0%
CCAGCTGCATCATGCAATCC+AGG - Chr4:70108322-70108341 None:intergenic 55.0%
CCCTTCATGCACCATGACCA+AGG - Chr4:70107301-70107320 None:intergenic 55.0%
CCTGGATTGCATGATGCAGC+TGG + Chr4:70108319-70108338 MsG0480022251.01.T01:CDS 55.0%
GACGCGGATGCTAAAGGATC+AGG - Chr4:70106640-70106659 None:intergenic 55.0%
GATCCTTTAGCATCCGCGTC+AGG + Chr4:70106640-70106659 MsG0480022251.01.T01:CDS 55.0%
GCCGCAGTAATACGAGAGCA+AGG - Chr4:70107941-70107960 None:intergenic 55.0%
GGAGGGAGTTCGGAGGAAAA+AGG + Chr4:70107360-70107379 MsG0480022251.01.T01:intron 55.0%
TTCGGAGGGAAGGAGAGAGT+AGG + Chr4:70109610-70109629 MsG0480022251.01.T01:intron 55.0%
TTGCATGATGCAGCTGGACC+TGG + Chr4:70108325-70108344 MsG0480022251.01.T01:CDS 55.0%
! CCATGACCAAGGTACTCCCT+AGG - Chr4:70107290-70107309 None:intergenic 55.0%
! CCTGTAGCTGTTTCAGCTCG+CGG + Chr4:70106490-70106509 MsG0480022251.01.T01:CDS 55.0%
!! CCTAGGGAGTACCTTGGTCA+TGG + Chr4:70107287-70107306 MsG0480022251.01.T01:intron 55.0%
!! GGATAGCCTAGGGAGTACCT+TGG + Chr4:70107281-70107300 MsG0480022251.01.T01:intron 55.0%
CCGCGAGCTGAAACAGCTAC+AGG - Chr4:70106493-70106512 None:intergenic 60.0%
CGTAGATGGAGGGAGTTCGG+AGG + Chr4:70107353-70107372 MsG0480022251.01.T01:intron 60.0%
GATGAAGCACACAGCAGCCC+TGG + Chr4:70108301-70108320 MsG0480022251.01.T01:CDS 60.0%
GCTCCTGACGCGGATGCTAA+AGG - Chr4:70106646-70106665 None:intergenic 60.0%
! GTAGCTGTTTCAGCTCGCGG+TGG + Chr4:70106493-70106512 MsG0480022251.01.T01:CDS 60.0%
GCATCCGCGTCAGGAGCAGA+TGG + Chr4:70106649-70106668 MsG0480022251.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 70106481 70110463 70106481 ID=MsG0480022251.01;Name=MsG0480022251.01
Chr4 mRNA 70106481 70110463 70106481 ID=MsG0480022251.01.T01;Parent=MsG0480022251.01;Name=MsG0480022251.01.T01;_AED=0.50;_eAED=0.52;_QI=0|0|0|1|1|1|4|0|198
Chr4 exon 70106481 70106756 70106481 ID=MsG0480022251.01.T01:exon:55587;Parent=MsG0480022251.01.T01
Chr4 exon 70108295 70108372 70108295 ID=MsG0480022251.01.T01:exon:55588;Parent=MsG0480022251.01.T01
Chr4 exon 70109727 70109749 70109727 ID=MsG0480022251.01.T01:exon:55589;Parent=MsG0480022251.01.T01
Chr4 exon 70110244 70110463 70110244 ID=MsG0480022251.01.T01:exon:55590;Parent=MsG0480022251.01.T01
Chr4 CDS 70106481 70106756 70106481 ID=MsG0480022251.01.T01:cds;Parent=MsG0480022251.01.T01
Chr4 CDS 70108295 70108372 70108295 ID=MsG0480022251.01.T01:cds;Parent=MsG0480022251.01.T01
Chr4 CDS 70109727 70109749 70109727 ID=MsG0480022251.01.T01:cds;Parent=MsG0480022251.01.T01
Chr4 CDS 70110244 70110463 70110244 ID=MsG0480022251.01.T01:cds;Parent=MsG0480022251.01.T01
Gene Sequence

>MsG0480022251.01.T01

ATGCATAGGCCTGTAGCTGTTTCAGCTCGCGGTGGATTACCTACTGATGACAGTGGAGACTCTGTTGTGACGTTAGATCAAGTTCCGCGATGGAATGATACCGATCAATCGTTAGGGTATGAAATTGGAGATTCTCCGTTGTCTGGTTCATATTTTCCTGATCCTTTAGCATCCGCGTCAGGAGCAGATGGAAGTACGTCCGTGTCTAGGTTTCCTGTTGATCATGAAATTAATTCGAGGATTTATTTGTGGCGAGGGAATCCGTGGAATCTTGAGAATATGGATGAAGCACACAGCAGCCCTGGATTGCATGATGCAGCTGGACCTGGTCTTGCAGAAGAATGTGCGACTCTGATTACCGATCATGCGAATGACAGGCTGCTTCCACTTTACTTTCCCCGGGATAAACATGAGGAGCAAGTTGCTTTGTCAAAACTTCCTGCAGATGTGGGGGATGAAAATGGTGAGACCATCATAGATGAGCGTAAAATCAGAATAAAGCCTTTACCTAAAAAGAGTGTTTCAAGATCACCTGATGCTGGAGTTGATATTCCTGTCAGCGATATTAGCCTGGTTCGAAAGTCAGTAATTTTTTAA
Protein sequence

>MsG0480022251.01.T01

MHRPVAVSARGGLPTDDSGDSVVTLDQVPRWNDTDQSLGYEIGDSPLSGSYFPDPLASASGADGSTSVSRFPVDHEINSRIYLWRGNPWNLENMDEAHSSPGLHDAAGPGLAEECATLITDHANDRLLPLYFPRDKHEEQVALSKLPADVGDENGETIIDERKIRIKPLPKKSVSRSPDAGVDIPVSDISLVRKSVIF*