AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780035936.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780035936.01.T01 MTR_7g405780 95.638 298 11 1 1 298 1 296 0.0 568
MsG0780035936.01.T01 MTR_7g405780 95.638 298 11 1 1 298 1 296 0.0 568
MsG0780035936.01.T01 MTR_7g405780 95.638 298 11 1 1 298 1 296 0.0 568
MsG0780035936.01.T01 MTR_7g405780 95.638 298 11 1 1 298 1 296 0.0 567
MsG0780035936.01.T01 MTR_1g116953 55.282 284 113 5 17 298 10 281 5.90e-100 303
MsG0780035936.01.T01 MTR_8g030680 41.319 288 165 3 10 296 4 288 1.89e-66 217
MsG0780035936.01.T01 MTR_6g463340 43.846 260 144 2 38 296 33 291 1.32e-64 212
MsG0780035936.01.T01 MTR_7g077800 41.463 287 163 2 10 296 4 285 2.19e-64 207
MsG0780035936.01.T01 MTR_7g077800 41.343 283 161 2 14 296 8 285 1.75e-63 207
MsG0780035936.01.T01 MTR_7g077800 41.463 287 163 2 10 296 4 285 1.41e-62 206
MsG0780035936.01.T01 MTR_8g030680 43.350 203 112 2 95 296 2 202 1.13e-47 166
MsG0780035936.01.T01 MTR_6g463340 45.856 181 96 2 117 296 4 183 1.77e-41 149
MsG0780035936.01.T01 MTR_7g077800 41.892 148 85 1 149 296 1 147 3.38e-28 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780035936.01.T01 AT1G05820 51.724 261 125 1 39 298 31 291 5.08e-89 272
MsG0780035936.01.T01 AT1G05820 51.724 261 125 1 39 298 31 291 1.49e-87 271
MsG0780035936.01.T01 AT1G05820 51.724 261 125 1 39 298 31 291 3.39e-87 271
MsG0780035936.01.T01 AT2G43070 46.296 270 143 2 30 298 26 294 2.22e-83 261
MsG0780035936.01.T01 AT2G43070 46.296 270 143 2 30 298 85 353 1.39e-82 260
MsG0780035936.01.T01 AT2G43070 45.818 275 143 2 30 298 26 300 1.40e-82 259
MsG0780035936.01.T01 AT2G43070 45.818 275 143 2 30 298 85 359 6.71e-82 259
MsG0780035936.01.T01 AT1G63690 42.105 266 151 2 32 296 27 290 6.23e-64 210
MsG0780035936.01.T01 AT1G63690 42.105 266 151 2 32 296 27 290 6.30e-64 210
MsG0780035936.01.T01 AT1G01650 40.351 285 166 3 13 296 9 290 1.28e-62 207
MsG0780035936.01.T01 AT1G05820 54.305 151 68 1 149 298 1 151 2.63e-52 176
MsG0780035936.01.T01 AT1G01650 41.611 149 85 2 149 296 1 148 5.64e-27 109
MsG0780035936.01.T01 AT1G01650 41.611 149 85 2 149 296 1 148 5.64e-27 109
MsG0780035936.01.T01 AT1G01650 41.611 149 85 2 149 296 1 148 5.64e-27 109

Find 53 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGGGGTTATTGCAGGATT+TGG 0.304237 7:+330535 None:intergenic
TGTTCTTCTTCATGTCATCT+TGG 0.341498 7:-327496 MsG0780035936.01.T01:CDS
CAATTGGAAGGGGTTATTGC+AGG 0.365992 7:+330529 None:intergenic
AGCGGTATGACTGCAAGATT+TGG 0.390051 7:-330381 MsG0780035936.01.T01:CDS
CTCAATGCATCTTTAACATC+TGG 0.391847 7:-329227 MsG0780035936.01.T01:CDS
CGGATTGTGTTTCTCTCTGT+CGG 0.407378 7:-330639 MsG0780035936.01.T01:CDS
TTATTGCAGGATTTGGACTT+GGG 0.431374 7:+330542 None:intergenic
AAAGCTACCATTGCACAATC+TGG 0.431460 7:-329853 MsG0780035936.01.T01:CDS
CTGTTCATCTTCAACTTCAA+AGG 0.431581 7:-330289 MsG0780035936.01.T01:intron
TCATGTCATCTTGGTTTATG+TGG 0.433677 7:-327487 MsG0780035936.01.T01:CDS
GCACAATCTGGAGGTGCTAC+TGG 0.444792 7:-329841 MsG0780035936.01.T01:CDS
CTAACTACCCCGGAGAAGTC+TGG 0.445248 7:-328042 MsG0780035936.01.T01:CDS
ATCGCGTTTCACATCGTTTG+AGG 0.445256 7:+330577 None:intergenic
CTTGTCAGATCTTGTTGAGA+TGG 0.448507 7:-329321 MsG0780035936.01.T01:intron
GTTATTGCAGGATTTGGACT+TGG 0.449116 7:+330541 None:intergenic
GTAGGATTAGAGAAAAGAAC+AGG 0.464111 7:+330318 None:intergenic
TAGCGTTCACCAGACTTCTC+CGG 0.464698 7:+328033 None:intergenic
TTTCTGCATTGCTGGTATTG+AGG 0.467309 7:-327450 MsG0780035936.01.T01:CDS
AGCGTTCACCAGACTTCTCC+GGG 0.472512 7:+328034 None:intergenic
CTGCAATAACCCCTTCCAAT+TGG 0.473899 7:-330528 MsG0780035936.01.T01:intron
CAATTGTGTGTGCTTCACTA+TGG 0.479326 7:-328071 MsG0780035936.01.T01:CDS
CTGTTGCACTATGTATTCGT+GGG 0.490034 7:-329894 MsG0780035936.01.T01:CDS
AGTTCTTAACATTAATTCAA+AGG 0.500692 7:-327564 MsG0780035936.01.T01:CDS
TCTGTTGCACTATGTATTCG+TGG 0.520835 7:-329895 MsG0780035936.01.T01:CDS
GAAGAACAACAGAACAAGAA+AGG 0.523771 7:+327511 None:intergenic
AACATAGATACCAATTGGAA+GGG 0.538212 7:+330518 None:intergenic
TTGATCATAAATAATGAAGA+GGG 0.540583 7:-329814 MsG0780035936.01.T01:intron
TAACATAGATACCAATTGGA+AGG 0.553951 7:+330517 None:intergenic
CAAAATGTTGCCGCAGCAAG+AGG 0.556030 7:-327602 MsG0780035936.01.T01:CDS
GTGATGATAACAAAATCAGC+AGG 0.562351 7:-329257 MsG0780035936.01.T01:CDS
AACTGGGCAGATGGTGAGGA+AGG 0.563889 7:-330414 MsG0780035936.01.T01:CDS
TTTGATCATAAATAATGAAG+AGG 0.572536 7:-329815 MsG0780035936.01.T01:CDS
TTCTCTTCTCATCTCTCACA+TGG 0.572901 7:+330711 None:intergenic
GAAGATGAACAGCAGTCAGT+AGG 0.579933 7:+330300 None:intergenic
TGTTGCACTATGTATTCGTG+GGG 0.587147 7:-329893 MsG0780035936.01.T01:CDS
GAGAAGTCTACAAGTGGTCG+AGG 0.593645 7:+328126 None:intergenic
CTATAGTGAATTATATCCCA+AGG 0.613141 7:-328013 MsG0780035936.01.T01:intron
TCTTTAACATCTGGAAGGAG+AGG 0.617879 7:-329218 MsG0780035936.01.T01:intron
ATGCATCTTTAACATCTGGA+AGG 0.622526 7:-329223 MsG0780035936.01.T01:CDS
ATCAGAACCGCCTCTTGCTG+CGG 0.624763 7:+327592 None:intergenic
TGGAATTGTGATGTTTGCCT+CGG 0.628100 7:+329283 None:intergenic
AAGTCTACAAGTGGTCGAGG+TGG 0.628391 7:+328129 None:intergenic
ACATAGATACCAATTGGAAG+GGG 0.630946 7:+330519 None:intergenic
AATGTTGCCGCAGCAAGAGG+CGG 0.641146 7:-327599 MsG0780035936.01.T01:CDS
AGCAACGAACTATAATACAA+TGG 0.645741 7:-330687 MsG0780035936.01.T01:exon
GCAACTGAGAAGTCTACAAG+TGG 0.652290 7:+328120 None:intergenic
AGCACCTCCAGATTGTGCAA+TGG 0.659277 7:+329846 None:intergenic
GCTACCATTGCACAATCTGG+AGG 0.659494 7:-329850 MsG0780035936.01.T01:CDS
ATGGTCAGATCTAACTACCC+CGG 0.680002 7:-328052 MsG0780035936.01.T01:CDS
GTTGCACTATGTATTCGTGG+GGG 0.728676 7:-329892 MsG0780035936.01.T01:CDS
GAGGAAGGTGTTATTCAAAG+CGG 0.739490 7:-330399 MsG0780035936.01.T01:CDS
GGTTTGCACTGATAGTACCG+AGG 0.757624 7:-329300 MsG0780035936.01.T01:CDS
GCGTTCACCAGACTTCTCCG+GGG 0.792486 7:+328035 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATATAGAAAAGTGAAA+TGG - Chr7:328015-328034 MsG0780035936.01.T01:CDS 15.0%
!! AAAAATTAATATGCACTATT+GGG + Chr7:329524-329543 None:intergenic 15.0%
!! ACAAATTAAACAAAAAAAGA+AGG + Chr7:328407-328426 None:intergenic 15.0%
!! CAAATTAAACAAAAAAAGAA+GGG + Chr7:328406-328425 None:intergenic 15.0%
!! TTATATTGAATAATGTATTC+AGG + Chr7:328591-328610 None:intergenic 15.0%
!! AGTTCTTAACATTAATTCAA+AGG - Chr7:330617-330636 MsG0780035936.01.T01:CDS 20.0%
!! CAAAAATTAATATGCACTAT+TGG + Chr7:329525-329544 None:intergenic 20.0%
!! GTACATATCATAAACTATAA+AGG + Chr7:330217-330236 None:intergenic 20.0%
!! TTGATCATAAATAATGAAGA+GGG - Chr7:328367-328386 MsG0780035936.01.T01:intron 20.0%
!! TTTGATCATAAATAATGAAG+AGG - Chr7:328366-328385 MsG0780035936.01.T01:intron 20.0%
!!! AAAAGTTAGTTAGATTAGTT+AGG + Chr7:328121-328140 None:intergenic 20.0%
!!! AAACTTGAATAGATTGTTTT+CGG + Chr7:330492-330511 None:intergenic 20.0%
!!! ACATTTTTTAATCTTTTGCT+AGG - Chr7:330551-330570 MsG0780035936.01.T01:CDS 20.0%
!!! TAGAGTTTTATATTATGTGT+TGG - Chr7:329638-329657 MsG0780035936.01.T01:intron 20.0%
!!! TTTTATATTATGTGTTGGAT+TGG - Chr7:329643-329662 MsG0780035936.01.T01:intron 20.0%
! AATAGTTCATGAACTTAAAG+TGG + Chr7:330416-330435 None:intergenic 25.0%
! ATAGTAACATAGATACCAAT+TGG + Chr7:327671-327690 None:intergenic 25.0%
! ATTTCAAACTGAACTACTAA+TGG - Chr7:329759-329778 MsG0780035936.01.T01:intron 25.0%
! GATTTCACTATGTATATGTT+TGG + Chr7:328705-328724 None:intergenic 25.0%
! TATGTATATGTTTGGTATCA+CGG + Chr7:328697-328716 None:intergenic 25.0%
!! ACTATTATTGTCTTTGAGAA+AGG - Chr7:329027-329046 MsG0780035936.01.T01:intron 25.0%
!! ACTGATAAACATGTTGATTA+TGG + Chr7:329123-329142 None:intergenic 25.0%
!! ATTGTTTTCGGTTAACAAAA+TGG + Chr7:330480-330499 None:intergenic 25.0%
!! CTAGATGATGAAAATCTTTT+TGG - Chr7:329097-329116 MsG0780035936.01.T01:intron 25.0%
!! GTAAAAAGTTGTGATTTTGA+AGG + Chr7:330527-330546 None:intergenic 25.0%
!!! ACTGGTTTTATTGAAACTTT+TGG - Chr7:329486-329505 MsG0780035936.01.T01:intron 25.0%
!!! TATTTGAGTTGATTTTGTGT+TGG + Chr7:328480-328499 None:intergenic 25.0%
AACATAGATACCAATTGGAA+GGG + Chr7:327666-327685 None:intergenic 30.0%
ACACTAGCACAGAAAAAAAA+AGG - Chr7:329787-329806 MsG0780035936.01.T01:intron 30.0%
AGCAACGAACTATAATACAA+TGG - Chr7:327494-327513 MsG0780035936.01.T01:CDS 30.0%
AGGTTATTTACATTACCATG+TGG - Chr7:329807-329826 MsG0780035936.01.T01:intron 30.0%
ATCTAATACATTTCCCATCT+CGG + Chr7:330334-330353 None:intergenic 30.0%
CATGTGAAGAAAACACAAAA+AGG + Chr7:327944-327963 None:intergenic 30.0%
CTATAGTGAATTATATCCCA+AGG - Chr7:330168-330187 MsG0780035936.01.T01:intron 30.0%
GTAAGAAAGAAAACCAATGA+TGG + Chr7:330391-330410 None:intergenic 30.0%
GTATTGTTGTACAAAAGATG+TGG - Chr7:329581-329600 MsG0780035936.01.T01:intron 30.0%
TAACATAGATACCAATTGGA+AGG + Chr7:327667-327686 None:intergenic 30.0%
TGTTGAATTGTATATTGCAG+TGG - Chr7:330012-330031 MsG0780035936.01.T01:intron 30.0%
TTACAGTAAAGTCTTTCTCA+TGG + Chr7:329455-329474 None:intergenic 30.0%
TTGGCAATAGCTTATTCATA+AGG + Chr7:328461-328480 None:intergenic 30.0%
! TTATGTGTTGGATTGGAATT+AGG - Chr7:329650-329669 MsG0780035936.01.T01:intron 30.0%
! TTTTCGGTTAACAAAATGGT+AGG + Chr7:330476-330495 None:intergenic 30.0%
!! GATTTTGTTATCATCACAAC+TGG + Chr7:328921-328940 None:intergenic 30.0%
!! TGTCTTTGAGAAAGGTATTT+AGG - Chr7:329035-329054 MsG0780035936.01.T01:intron 30.0%
!!! TTTTTTTTGTGTGTGTGTGT+CGG - Chr7:328185-328204 MsG0780035936.01.T01:intron 30.0%
AAAGGTGACAAATGATTGCT+AGG + Chr7:330199-330218 None:intergenic 35.0%
AATAAGCGAATCCAAGTGTT+AGG - Chr7:328496-328515 MsG0780035936.01.T01:intron 35.0%
AATACACGTGATTATGCTTG+AGG + Chr7:328564-328583 None:intergenic 35.0%
AATTCAATTGCTGCAGGTTA+AGG - Chr7:327739-327758 MsG0780035936.01.T01:intron 35.0%
ACATAGATACCAATTGGAAG+GGG + Chr7:327665-327684 None:intergenic 35.0%
ACTGTAAATGCTTGTCTAAC+TGG - Chr7:329468-329487 MsG0780035936.01.T01:intron 35.0%
AGTAAGCACTATTTGGATGT+GGG - Chr7:330264-330283 MsG0780035936.01.T01:intron 35.0%
ATCCAAATAGTGCTTACTCA+AGG + Chr7:330262-330281 None:intergenic 35.0%
ATGATTGCTAGGAAAAACCT+TGG + Chr7:330188-330207 None:intergenic 35.0%
ATGCATCTTTAACATCTGGA+AGG - Chr7:328958-328977 MsG0780035936.01.T01:intron 35.0%
CAATTCAATTCAATTGCTGC+AGG - Chr7:327733-327752 MsG0780035936.01.T01:intron 35.0%
CATAAGGACTTATCATGCTA+AGG + Chr7:328445-328464 None:intergenic 35.0%
CATTTATGTGTTTGCATGAG+AGG + Chr7:329867-329886 None:intergenic 35.0%
CTAAAGATCTTACTCTCACA+TGG + Chr7:329349-329368 None:intergenic 35.0%
CTCAATGCATCTTTAACATC+TGG - Chr7:328954-328973 MsG0780035936.01.T01:intron 35.0%
CTCTCATGCAAACACATAAA+TGG - Chr7:329865-329884 MsG0780035936.01.T01:CDS 35.0%
CTGATCTACATTTCCATCAT+TGG - Chr7:330375-330394 MsG0780035936.01.T01:CDS 35.0%
CTGTTCATCTTCAACTTCAA+AGG - Chr7:327892-327911 MsG0780035936.01.T01:intron 35.0%
GAAGAACAACAGAACAAGAA+AGG + Chr7:330673-330692 None:intergenic 35.0%
GTAGGATTAGAGAAAAGAAC+AGG + Chr7:327866-327885 None:intergenic 35.0%
GTGATGATAACAAAATCAGC+AGG - Chr7:328924-328943 MsG0780035936.01.T01:intron 35.0%
TATATGTTTGGTATCACGGT+GGG + Chr7:328693-328712 None:intergenic 35.0%
TCATGTCATCTTGGTTTATG+TGG - Chr7:330694-330713 MsG0780035936.01.T01:five_prime_UTR 35.0%
TGATTGCTAGGAAAAACCTT+GGG + Chr7:330187-330206 None:intergenic 35.0%
TGCATATTTATCCTAGCTGT+CGG - Chr7:329957-329976 MsG0780035936.01.T01:intron 35.0%
TGTACAACAATACCATACGA+AGG + Chr7:329574-329593 None:intergenic 35.0%
TGTATTAGATACACTGACCT+TGG - Chr7:330344-330363 MsG0780035936.01.T01:CDS 35.0%
TGTGAGAGTAAGATCTTTAG+AGG - Chr7:329349-329368 MsG0780035936.01.T01:intron 35.0%
TGTTCTTCTTCATGTCATCT+TGG - Chr7:330685-330704 MsG0780035936.01.T01:exon 35.0%
TTAACCATATGTAGACCATG+TGG + Chr7:329992-330011 None:intergenic 35.0%
TTATTGCAGGATTTGGACTT+GGG + Chr7:327642-327661 None:intergenic 35.0%
TTTCTCACCCATTTACAGTT+AGG - Chr7:328527-328546 MsG0780035936.01.T01:intron 35.0%
! ACTTCTCAGTTGCATTTTTG+TGG - Chr7:330071-330090 MsG0780035936.01.T01:intron 35.0%
! ATTGTACTTTTCTGCATTGC+TGG - Chr7:330723-330742 MsG0780035936.01.T01:five_prime_UTR 35.0%
! GGTTTTTCTACTGTGTTTGT+AGG + Chr7:329434-329453 None:intergenic 35.0%
! TTTTCCACATGGTCTACATA+TGG - Chr7:329985-330004 MsG0780035936.01.T01:intron 35.0%
!! ACGCTATTTTCAGCTTTTTC+TGG + Chr7:327836-327855 None:intergenic 35.0%
!! AGAAGTGCCTAACTGTAAAT+GGG + Chr7:328537-328556 None:intergenic 35.0%
!! GTAGCCTATGTTTGTTATCA+GGG - Chr7:328644-328663 MsG0780035936.01.T01:intron 35.0%
AAAGCTACCATTGCACAATC+TGG - Chr7:328328-328347 MsG0780035936.01.T01:intron 40.0%
AAAGTGACAAGCCTAACACT+TGG + Chr7:328510-328529 None:intergenic 40.0%
AACAAGTCCTAAGCCAACTA+GGG + Chr7:329287-329306 None:intergenic 40.0%
ATATTTGAGCAATGCCGAGA+TGG - Chr7:330317-330336 MsG0780035936.01.T01:CDS 40.0%
CAATTGTGTGTGCTTCACTA+TGG - Chr7:330110-330129 MsG0780035936.01.T01:intron 40.0%
CTGTTGCACTATGTATTCGT+GGG - Chr7:328287-328306 MsG0780035936.01.T01:intron 40.0%
CTTGTCAGATCTTGTTGAGA+TGG - Chr7:328860-328879 MsG0780035936.01.T01:intron 40.0%
GAGTAAGCACTATTTGGATG+TGG - Chr7:330263-330282 MsG0780035936.01.T01:intron 40.0%
GCAGGTTAAGGTGAAAAACT+GGG - Chr7:327751-327770 MsG0780035936.01.T01:intron 40.0%
GCATATTTATCCTAGCTGTC+GGG - Chr7:329958-329977 MsG0780035936.01.T01:intron 40.0%
GGACTTATCATGCTAAGGAA+AGG + Chr7:328440-328459 None:intergenic 40.0%
GTAAGCACTATTTGGATGTG+GGG - Chr7:330265-330284 MsG0780035936.01.T01:intron 40.0%
GTATATGTTTGGTATCACGG+TGG + Chr7:328694-328713 None:intergenic 40.0%
GTTATTGCAGGATTTGGACT+TGG + Chr7:327643-327662 None:intergenic 40.0%
TAACAAGTCCTAAGCCAACT+AGG + Chr7:329288-329307 None:intergenic 40.0%
TATTTCCGAGCTAATGACTG+TGG - Chr7:328215-328234 MsG0780035936.01.T01:intron 40.0%
TATTTGAGCAATGCCGAGAT+GGG - Chr7:330318-330337 MsG0780035936.01.T01:CDS 40.0%
TCTCGTCTCCTTTGTTCAAA+GGG + Chr7:329910-329929 None:intergenic 40.0%
TCTGTTGCACTATGTATTCG+TGG - Chr7:328286-328305 MsG0780035936.01.T01:intron 40.0%
TCTTCTTCTTCTTCTCGCTT+CGG - Chr7:327522-327541 MsG0780035936.01.T01:CDS 40.0%
TCTTTAACATCTGGAAGGAG+AGG - Chr7:328963-328982 MsG0780035936.01.T01:intron 40.0%
TGCAGGTTAAGGTGAAAAAC+TGG - Chr7:327750-327769 MsG0780035936.01.T01:intron 40.0%
TGCCTTGAGTAAGCACTATT+TGG - Chr7:330257-330276 MsG0780035936.01.T01:intron 40.0%
TGGAATTGTGATGTTTGCCT+CGG + Chr7:328901-328920 None:intergenic 40.0%
TGTACAAAAGATGTGGAGCA+GGG - Chr7:329588-329607 MsG0780035936.01.T01:intron 40.0%
TGTTGCACTATGTATTCGTG+GGG - Chr7:328288-328307 MsG0780035936.01.T01:intron 40.0%
TTCTCTTCTCATCTCTCACA+TGG + Chr7:327473-327492 None:intergenic 40.0%
TTGATGCACCCTTTGAACAA+AGG - Chr7:329899-329918 MsG0780035936.01.T01:CDS 40.0%
TTGTACAAAAGATGTGGAGC+AGG - Chr7:329587-329606 MsG0780035936.01.T01:intron 40.0%
TTTCTGCATTGCTGGTATTG+AGG - Chr7:330731-330750 MsG0780035936.01.T01:five_prime_UTR 40.0%
! AAGGGTGCATCAAAATGAGA+AGG + Chr7:329892-329911 None:intergenic 40.0%
! CTCAGTTGCATTTTTGTGGT+TGG - Chr7:330075-330094 MsG0780035936.01.T01:intron 40.0%
!! CCTATGTTTGTTATCAGGGT+GGG - Chr7:328648-328667 MsG0780035936.01.T01:intron 40.0%
!! CGTAGCCTATGTTTGTTATC+AGG - Chr7:328643-328662 MsG0780035936.01.T01:intron 40.0%
!! GACATGGTGGAATTTCTAGT+AGG + Chr7:329843-329862 None:intergenic 40.0%
!! GAGAAGTGCCTAACTGTAAA+TGG + Chr7:328538-328557 None:intergenic 40.0%
!! GAGGAAGGTGTTATTCAAAG+CGG - Chr7:327782-327801 MsG0780035936.01.T01:intron 40.0%
!! GTAGGTGCTTTAAAACCACA+TGG + Chr7:329825-329844 None:intergenic 40.0%
!! TGTCGGGTTTATTTTCCACA+TGG - Chr7:329974-329993 MsG0780035936.01.T01:intron 40.0%
!! TTTTTGTGGTTGGTGTCTGT+TGG - Chr7:330085-330104 MsG0780035936.01.T01:intron 40.0%
AACATCTGGAAGGAGAGGTA+AGG - Chr7:328968-328987 MsG0780035936.01.T01:intron 45.0%
AACTCTACTCTTAAGCTGCG+TGG - Chr7:329323-329342 MsG0780035936.01.T01:intron 45.0%
AAGCCTTGATGTGTTGGACA+GGG + Chr7:329176-329195 None:intergenic 45.0%
AAGGTGAAAAACTGGGCAGA+TGG - Chr7:327758-327777 MsG0780035936.01.T01:intron 45.0%
ACAACCAAGCCTTGATGTGT+TGG + Chr7:329182-329201 None:intergenic 45.0%
ACAAGTCCTAAGCCAACTAG+GGG + Chr7:329286-329305 None:intergenic 45.0%
ACATCTGGAAGGAGAGGTAA+GGG - Chr7:328969-328988 MsG0780035936.01.T01:intron 45.0%
AGCGGTATGACTGCAAGATT+TGG - Chr7:327800-327819 MsG0780035936.01.T01:intron 45.0%
ATCGCGTTTCACATCGTTTG+AGG + Chr7:327607-327626 None:intergenic 45.0%
ATGGTCAGATCTAACTACCC+CGG - Chr7:330129-330148 MsG0780035936.01.T01:intron 45.0%
CAATTGGAAGGGGTTATTGC+AGG + Chr7:327655-327674 None:intergenic 45.0%
CATCACCACAGTCATTAGCT+CGG + Chr7:328223-328242 None:intergenic 45.0%
CCCACCCTGATAACAAACAT+AGG + Chr7:328651-328670 None:intergenic 45.0%
CGGATTGTGTTTCTCTCTGT+CGG - Chr7:327542-327561 MsG0780035936.01.T01:CDS 45.0%
CTGCAATAACCCCTTCCAAT+TGG - Chr7:327653-327672 MsG0780035936.01.T01:intron 45.0%
CTTGTCCAACTTGGTAGGTT+TGG + Chr7:329550-329569 None:intergenic 45.0%
GAAGATGAACAGCAGTCAGT+AGG + Chr7:327884-327903 None:intergenic 45.0%
GAAGGGGTTATTGCAGGATT+TGG + Chr7:327649-327668 None:intergenic 45.0%
GCAACTGAGAAGTCTACAAG+TGG + Chr7:330064-330083 None:intergenic 45.0%
GGAAAATAAACCCGACAGCT+AGG + Chr7:329971-329990 None:intergenic 45.0%
GTAGATCAGTACACATGCCA+AGG + Chr7:330364-330383 None:intergenic 45.0%
GTCTCGTCTCCTTTGTTCAA+AGG + Chr7:329911-329930 None:intergenic 45.0%
GTTGCACTATGTATTCGTGG+GGG - Chr7:328289-328308 MsG0780035936.01.T01:intron 45.0%
TGTTTGCATGAGAGGAGACA+TGG + Chr7:329859-329878 None:intergenic 45.0%
TTGCACCAAACCTACCAAGT+TGG - Chr7:329542-329561 MsG0780035936.01.T01:intron 45.0%
TTTATTCCCCTTCCCCTAGT+TGG - Chr7:329271-329290 MsG0780035936.01.T01:CDS 45.0%
! AGGTAAGGGCTTCGACTTTT+AGG - Chr7:328983-329002 MsG0780035936.01.T01:intron 45.0%
! CAAACCTACCAAGTTGGACA+AGG - Chr7:329548-329567 MsG0780035936.01.T01:intron 45.0%
! GGTAAGGGCTTCGACTTTTA+GGG - Chr7:328984-329003 MsG0780035936.01.T01:intron 45.0%
!! GCCTATGTTTGTTATCAGGG+TGG - Chr7:328647-328666 MsG0780035936.01.T01:intron 45.0%
!! ATGTTAAAAATTTAATAAAA+TGG + Chr7:328162-328181 None:intergenic 5.0%
AAGTCTACAAGTGGTCGAGG+TGG + Chr7:330055-330074 None:intergenic 50.0%
AGCACCTCCAGATTGTGCAA+TGG + Chr7:328338-328357 None:intergenic 50.0%
AGTTGGACAAGGCCTTCGTA+TGG - Chr7:329559-329578 MsG0780035936.01.T01:intron 50.0%
CAAAATGTTGCCGCAGCAAG+AGG - Chr7:330579-330598 MsG0780035936.01.T01:CDS 50.0%
CAAAGGAGACGAGACGAACA+TGG - Chr7:329916-329935 MsG0780035936.01.T01:intron 50.0%
CAAGCCTTGATGTGTTGGAC+AGG + Chr7:329177-329196 None:intergenic 50.0%
CTGTCCAACACATCAAGGCT+TGG - Chr7:329175-329194 MsG0780035936.01.T01:intron 50.0%
GAAAAACTGGGCAGATGGTG+AGG - Chr7:327763-327782 MsG0780035936.01.T01:intron 50.0%
GAGAAGTCTACAAGTGGTCG+AGG + Chr7:330058-330077 None:intergenic 50.0%
GCTACCATTGCACAATCTGG+AGG - Chr7:328331-328350 MsG0780035936.01.T01:intron 50.0%
TAGCGTTCACCAGACTTCTC+CGG + Chr7:330151-330170 None:intergenic 50.0%
TCCTAAGCCAACTAGGGGAA+GGG + Chr7:329281-329300 None:intergenic 50.0%
TGACCCTGTCCAACACATCA+AGG - Chr7:329170-329189 MsG0780035936.01.T01:intron 50.0%
TTGCATGAGAGGAGACATGG+TGG + Chr7:329856-329875 None:intergenic 50.0%
! AAGGCCTTGTCCAACTTGGT+AGG + Chr7:329555-329574 None:intergenic 50.0%
! GGTTTGCACTGATAGTACCG+AGG - Chr7:328881-328900 MsG0780035936.01.T01:intron 50.0%
! TACGAAGGCCTTGTCCAACT+TGG + Chr7:329559-329578 None:intergenic 50.0%
AACTGGGCAGATGGTGAGGA+AGG - Chr7:327767-327786 MsG0780035936.01.T01:intron 55.0%
AATGTTGCCGCAGCAAGAGG+CGG - Chr7:330582-330601 MsG0780035936.01.T01:CDS 55.0%
AGCGTTCACCAGACTTCTCC+GGG + Chr7:330150-330169 None:intergenic 55.0%
ATCAGAACCGCCTCTTGCTG+CGG + Chr7:330592-330611 None:intergenic 55.0%
CCTAAGCCAACTAGGGGAAG+GGG + Chr7:329280-329299 None:intergenic 55.0%
CTAACTACCCCGGAGAAGTC+TGG - Chr7:330139-330158 MsG0780035936.01.T01:intron 55.0%
GTCCTAAGCCAACTAGGGGA+AGG + Chr7:329282-329301 None:intergenic 55.0%
!! GCACAATCTGGAGGTGCTAC+TGG - Chr7:328340-328359 MsG0780035936.01.T01:intron 55.0%
GCGTTCACCAGACTTCTCCG+GGG + Chr7:330149-330168 None:intergenic 60.0%
! CCCCTTCCCCTAGTTGGCTT+AGG - Chr7:329277-329296 MsG0780035936.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 327442 330761 327442 ID=MsG0780035936.01;Name=MsG0780035936.01
Chr7 mRNA 327442 330761 327442 ID=MsG0780035936.01.T01;Parent=MsG0780035936.01;Name=MsG0780035936.01.T01;_AED=0.49;_eAED=0.50;_QI=71|1|0.83|1|1|1|6|0|298
Chr7 exon 327442 327630 327442 ID=MsG0780035936.01.T01:exon:15446;Parent=MsG0780035936.01.T01
Chr7 exon 328014 328171 328014 ID=MsG0780035936.01.T01:exon:15445;Parent=MsG0780035936.01.T01
Chr7 exon 329219 329335 329219 ID=MsG0780035936.01.T01:exon:15444;Parent=MsG0780035936.01.T01
Chr7 exon 329815 329926 329815 ID=MsG0780035936.01.T01:exon:15443;Parent=MsG0780035936.01.T01
Chr7 exon 330290 330448 330290 ID=MsG0780035936.01.T01:exon:15442;Parent=MsG0780035936.01.T01
Chr7 exon 330529 330761 330529 ID=MsG0780035936.01.T01:exon:15441;Parent=MsG0780035936.01.T01
Chr7 five_prime_UTR 330691 330761 330691 ID=MsG0780035936.01.T01:five_prime_utr;Parent=MsG0780035936.01.T01
Chr7 CDS 330529 330690 330529 ID=MsG0780035936.01.T01:cds;Parent=MsG0780035936.01.T01
Chr7 CDS 330290 330448 330290 ID=MsG0780035936.01.T01:cds;Parent=MsG0780035936.01.T01
Chr7 CDS 329815 329926 329815 ID=MsG0780035936.01.T01:cds;Parent=MsG0780035936.01.T01
Chr7 CDS 329219 329335 329219 ID=MsG0780035936.01.T01:cds;Parent=MsG0780035936.01.T01
Chr7 CDS 328014 328171 328014 ID=MsG0780035936.01.T01:cds;Parent=MsG0780035936.01.T01
Chr7 CDS 327442 327630 327442 ID=MsG0780035936.01.T01:cds;Parent=MsG0780035936.01.T01
Gene Sequence

>MsG0780035936.01.T01

ATGGCTTCTTCTTCTTCTTCTTCTCGCTTCGGATTGTGTTTCTCTCTGTCGGTGCTGTTGTTGTTGCTGTTTGCATCAGCTGCTTCTTCTGCCTCAAACGATGTGAAACGCGATGACGATAGAGCTCCCAAGTCCAAATCCTGCAATAACCCCTTCCAATTGGTTAAGGTGAAAAACTGGGCAGATGGTGAGGAAGGTGTTATTCAAAGCGGTATGACTGCAAGATTTGGTTCTTCGTTACCAGAAAAAGCTGAAAATAGCGTCAGAACTCCTGTTCTTTTCTCTAATCCTACTGACTGCTGTTCATCTTCAACTTCAAAGTTAGTTGACTCTGTTGCACTATGTATTCGTGGGGGTTGTGATTTTCAACTTAAAGCTACCATTGCACAATCTGGAGGTGCTACTGGCGTTTTGATCATAAATAATGAAGAGGATCTTGTTGAGATGGTTTGCACTGATAGTACCGAGGCAAACATCACAATTCCAGTTGTGATGATAACAAAATCAGCAGGAGAAGCTCTCAATGCATCTTTAACATCTGGAAGGAGAGTGGAAGTTCTGTTATATGCTCCACCTCGACCACTTGTAGACTTCTCAGTTGCATTTTTGTGGTTGGTGTCTGTTGGAACAATTGTGTGTGCTTCACTATGGTCAGATCTAACTACCCCGGAGAAGTCTGGTGAACGCTATAGTGAATTATATCCCAAGGAATCTCAAAATGTTGCCGCAGCAAGAGGCGGTTCTGATAAGCAAGTTCTTAACATTAATTCAAAGGCTGCTGTCGTGTTTGTCATATCAGCATCTACCTTTCTTGTTCTGTTGTTCTTCTTCATGTCATCTTGGTTTATGTGGTTGCTCATTGTACTTTTCTGCATTGCTGGTATTGAGGTAATGTAA
Protein sequence

>MsG0780035936.01.T01

MASSSSSSRFGLCFSLSVLLLLLFASAASSASNDVKRDDDRAPKSKSCNNPFQLVKVKNWADGEEGVIQSGMTARFGSSLPEKAENSVRTPVLFSNPTDCCSSSTSKLVDSVALCIRGGCDFQLKATIAQSGGATGVLIINNEEDLVEMVCTDSTEANITIPVVMITKSAGEALNASLTSGRRVEVLLYAPPRPLVDFSVAFLWLVSVGTIVCASLWSDLTTPEKSGERYSELYPKESQNVAAARGGSDKQVLNINSKAAVVFVISASTFLVLLFFFMSSWFMWLLIVLFCIAGIEVM*