Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023453.01.T01 | XP_013446868.1 | 59.278 | 194 | 61 | 5 | 6 | 190 | 2 | 186 | 3.08E-58 | 193 |
| MsG0480023453.01.T02 | XP_013446868.1 | 59.278 | 194 | 61 | 5 | 1 | 185 | 2 | 186 | 2.73E-58 | 193 |
| MsG0480023453.01.T03 | XP_013446868.1 | 88.06 | 67 | 7 | 1 | 24 | 90 | 121 | 186 | 2.66E-32 | 123 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023453.01.T01 | G7LD80 | 59.278 | 194 | 61 | 5 | 6 | 190 | 2 | 186 | 1.47e-58 | 193 |
| MsG0480023453.01.T02 | G7LD80 | 59.278 | 194 | 61 | 5 | 1 | 185 | 2 | 186 | 1.30e-58 | 193 |
| MsG0480023453.01.T03 | G7LD80 | 88.060 | 67 | 7 | 1 | 24 | 90 | 121 | 186 | 1.27e-32 | 123 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0380015056.01 | MsG0480023453.01 | 0.837217 | 5.922117e-57 | 7.639923e-54 |
| MsG0380015849.01 | MsG0480023453.01 | 0.826115 | 3.238892e-54 | 3.009635e-51 |
| MsG0280010160.01 | MsG0480023453.01 | 0.857777 | 1.294972e-62 | 3.232354e-59 |
| MsG0280010484.01 | MsG0480023453.01 | 0.865849 | 4.380408e-65 | 1.446078e-61 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023453.01.T01 | MTR_8g093390 | 59.278 | 194 | 61 | 5 | 6 | 190 | 2 | 186 | 3.73e-62 | 193 |
| MsG0480023453.01.T01 | MTR_8g093335 | 59.278 | 194 | 61 | 5 | 6 | 190 | 2 | 186 | 3.73e-62 | 193 |
| MsG0480023453.01.T02 | MTR_8g093390 | 59.278 | 194 | 61 | 5 | 1 | 185 | 2 | 186 | 3.30e-62 | 193 |
| MsG0480023453.01.T02 | MTR_8g093335 | 59.278 | 194 | 61 | 5 | 1 | 185 | 2 | 186 | 3.30e-62 | 193 |
| MsG0480023453.01.T03 | MTR_8g093390 | 88.060 | 67 | 7 | 1 | 24 | 90 | 121 | 186 | 3.22e-36 | 123 |
| MsG0480023453.01.T03 | MTR_8g093335 | 88.060 | 67 | 7 | 1 | 24 | 90 | 121 | 186 | 3.22e-36 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 93 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCTGCTGGTTGGTGGTGG+TGG | 0.136065 | 4:+85333573 | None:intergenic |
| AGTTGAAATGGGTCAGTTTC+CGG | 0.224402 | 4:-85333308 | MsG0480023453.01.T01:CDS |
| CCTGCTGGTTGGTGGTGGTG+GGG | 0.298019 | 4:+85333575 | None:intergenic |
| TCCTGCTGGTTGGTGGTGGT+GGG | 0.315250 | 4:+85333574 | None:intergenic |
| CTGCTGGTTGGTGGTGGTGG+GGG | 0.328815 | 4:+85333576 | None:intergenic |
| ACGGGGATGTGGAGGACTTT+AGG | 0.346487 | 4:+85333509 | None:intergenic |
| AACCACAAACTACGCCGTTT+TGG | 0.351186 | 4:-85333216 | MsG0480023453.01.T01:CDS |
| CCGCTGCCGGAGGGAAATTC+CGG | 0.355827 | 4:+85333712 | None:intergenic |
| TGATGAGTGGTTGTCGGTGC+TGG | 0.359553 | 4:+85333546 | None:intergenic |
| GTTGAAATGGGTCAGTTTCC+GGG | 0.370125 | 4:-85333307 | MsG0480023453.01.T01:CDS |
| GATTTAACGTGGTTGTTAGA+AGG | 0.373912 | 4:-85333331 | MsG0480023453.01.T01:CDS |
| CATCCCCGTCAGTGACTTCA+TGG | 0.377926 | 4:-85333495 | MsG0480023453.01.T01:CDS |
| CAGCGTCTCACCGGACCTTC+CGG | 0.385512 | 4:-85333464 | MsG0480023453.01.T01:CDS |
| GGGAGGCTCCTGCTGGTTGG+TGG | 0.387529 | 4:+85333567 | None:intergenic |
| GGGGCGGTGGGTGGAAGCGG+TGG | 0.401082 | 4:+85333595 | None:intergenic |
| TTGACCCTTTCTCTCTCTGT+TGG | 0.402680 | 4:+85333368 | None:intergenic |
| ATCTTCGCCGCCGGAAGGTC+CGG | 0.405098 | 4:+85333454 | None:intergenic |
| GTTGTTAGAAGGAGTTGAAA+TGG | 0.414003 | 4:-85333320 | MsG0480023453.01.T01:CDS |
| AGGCTCCTGCTGGTTGGTGG+TGG | 0.420013 | 4:+85333570 | None:intergenic |
| CGTTATGGTATGGGAAGCTT+TGG | 0.436813 | 4:-85333180 | MsG0480023453.01.T01:CDS |
| CAAGTCCAACAGAGAGAGAA+AGG | 0.437655 | 4:-85333373 | MsG0480023453.01.T01:CDS |
| ACAATCCGGCGCGGTTTCTC+CGG | 0.438862 | 4:-85333423 | MsG0480023453.01.T01:CDS |
| GGCATGATACGAGTCCGTTA+TGG | 0.442093 | 4:-85333195 | MsG0480023453.01.T01:CDS |
| AGCTTTGGTGGCGAGTCCGT+CGG | 0.447031 | 4:-85333165 | MsG0480023453.01.T01:CDS |
| CGGTGCTGGGAGGCTCCTGC+TGG | 0.452909 | 4:+85333560 | None:intergenic |
| CGGCGTTGATGTTCCGCTGC+CGG | 0.454418 | 4:+85333699 | None:intergenic |
| TGCCAAAACGGCGTAGTTTG+TGG | 0.457897 | 4:+85333214 | None:intergenic |
| GAAAAGAATCCCTGTGATAT+CGG | 0.459892 | 4:+85333253 | None:intergenic |
| TATGGTATGGGAAGCTTTGG+TGG | 0.467525 | 4:-85333177 | MsG0480023453.01.T01:CDS |
| AGGGAAATTCCGGTGGGTCA+TGG | 0.470452 | 4:+85333722 | None:intergenic |
| GCTGGGAGGCTCCTGCTGGT+TGG | 0.478572 | 4:+85333564 | None:intergenic |
| GATACGAGTCCGTTATGGTA+TGG | 0.479196 | 4:-85333190 | MsG0480023453.01.T01:CDS |
| TGTATTTGAAGCTCTCTCCT+AGG | 0.481120 | 4:+85333673 | None:intergenic |
| TGGGTGGAAGCGGTGGTTTG+CGG | 0.482673 | 4:+85333602 | None:intergenic |
| CCCCACCACCACCAACCAGC+AGG | 0.483993 | 4:-85333575 | MsG0480023453.01.T01:CDS |
| CCGGAATTTCCCTCCGGCAG+CGG | 0.484635 | 4:-85333712 | MsG0480023453.01.T01:CDS |
| TGAAGTCACTGACGGGGATG+TGG | 0.485162 | 4:+85333498 | None:intergenic |
| TTGTTAGAAGGAGTTGAAAT+GGG | 0.486521 | 4:-85333319 | MsG0480023453.01.T01:CDS |
| GCTTTGGTGGCGAGTCCGTC+GGG | 0.488311 | 4:-85333164 | MsG0480023453.01.T01:CDS |
| TGTTGGACTTGTTCTTTCGA+TGG | 0.497056 | 4:+85333385 | None:intergenic |
| TTGTTGACTCTGAGTGGTGG+TGG | 0.506817 | 4:+85333640 | None:intergenic |
| GGTGGTAGAGTCGCCGGTGC+CGG | 0.511212 | 4:+85333274 | None:intergenic |
| GACCCACCGGAATTTCCCTC+CGG | 0.513239 | 4:-85333718 | MsG0480023453.01.T01:CDS |
| GTTTCCGGGGATATTATCTC+CGG | 0.519146 | 4:-85333293 | MsG0480023453.01.T01:CDS |
| GTGGAGGACTTTAGGAGATA+CGG | 0.519897 | 4:+85333517 | None:intergenic |
| TCGAAGATACTGAACAGATC+TGG | 0.522592 | 4:+85333104 | None:intergenic |
| GAAGATGCACCTCAACAATC+CGG | 0.524551 | 4:-85333437 | MsG0480023453.01.T01:CDS |
| ATACGAGTCCGTTATGGTAT+GGG | 0.526570 | 4:-85333189 | MsG0480023453.01.T01:CDS |
| CGTTGATGTTCCGCTGCCGG+AGG | 0.527495 | 4:+85333702 | None:intergenic |
| TTGAGGTGCATCTTCGCCGC+CGG | 0.529100 | 4:+85333445 | None:intergenic |
| GGTGCATCTTCGCCGCCGGA+AGG | 0.534976 | 4:+85333449 | None:intergenic |
| GACTCTACCACCGATATCAC+AGG | 0.543319 | 4:-85333263 | MsG0480023453.01.T01:CDS |
| GACGTTGTTCAGCGTCTCAC+CGG | 0.548439 | 4:-85333473 | MsG0480023453.01.T01:CDS |
| ACGTCCATGAAGTCACTGAC+GGG | 0.551581 | 4:+85333491 | None:intergenic |
| TCTTCTCCACCATGACCCAC+CGG | 0.554038 | 4:-85333731 | MsG0480023453.01.T01:CDS |
| CTGCCGGAGGGAAATTCCGG+TGG | 0.554993 | 4:+85333715 | None:intergenic |
| GATGAGTGGTTGTCGGTGCT+GGG | 0.559871 | 4:+85333547 | None:intergenic |
| AACAGATCTGGCGACGGCAA+CGG | 0.560786 | 4:+85333116 | None:intergenic |
| GTTGATGTTCCGCTGCCGGA+GGG | 0.570170 | 4:+85333703 | None:intergenic |
| ATGGAAGCAAGTCTCGCTGC+CGG | 0.572026 | 4:+85333404 | None:intergenic |
| GGGGATATTATCTCCGGCAC+CGG | 0.572298 | 4:-85333287 | MsG0480023453.01.T01:CDS |
| TTGAAATGGGTCAGTTTCCG+GGG | 0.577499 | 4:-85333306 | MsG0480023453.01.T01:CDS |
| GTTTGTGGTTCATTCATACC+AGG | 0.582026 | 4:+85333229 | None:intergenic |
| TCTTTGTTGACTCTGAGTGG+TGG | 0.582276 | 4:+85333637 | None:intergenic |
| AGGAGAGAGCTTCAAATACA+AGG | 0.585364 | 4:-85333670 | MsG0480023453.01.T01:CDS |
| CAAAGCTTCCCATACCATAA+CGG | 0.587892 | 4:+85333181 | None:intergenic |
| TGAAGCTCTCTCCTAGGTGA+CGG | 0.588198 | 4:+85333679 | None:intergenic |
| GAACATCAACGCCGTCACCT+AGG | 0.589141 | 4:-85333690 | MsG0480023453.01.T01:CDS |
| GATTCTTTGTTGACTCTGAG+TGG | 0.590484 | 4:+85333634 | None:intergenic |
| AGTAGATGATGAGTGGTTGT+CGG | 0.597664 | 4:+85333540 | None:intergenic |
| AAGTCCAACAGAGAGAGAAA+GGG | 0.597702 | 4:-85333372 | MsG0480023453.01.T01:CDS |
| GGACTCGTATCATGCCAAAA+CGG | 0.599817 | 4:+85333202 | None:intergenic |
| GAAACCGCGCCGGATTGTTG+AGG | 0.601659 | 4:+85333428 | None:intergenic |
| GGTGCCGGAGATAATATCCC+CGG | 0.604831 | 4:+85333289 | None:intergenic |
| GATATCGGTGGTAGAGTCGC+CGG | 0.611845 | 4:+85333268 | None:intergenic |
| AACGTCCATGAAGTCACTGA+CGG | 0.617242 | 4:+85333490 | None:intergenic |
| CGACGGCAACGGCGAAACCA+CGG | 0.623882 | 4:+85333127 | None:intergenic |
| CGCTGCCGGAGAAACCGCGC+CGG | 0.624624 | 4:+85333418 | None:intergenic |
| GATACGGAGTAGATGATGAG+TGG | 0.625006 | 4:+85333533 | None:intergenic |
| GAAATTCCGGTGGGTCATGG+TGG | 0.625421 | 4:+85333725 | None:intergenic |
| TGCCGGAGGGAAATTCCGGT+GGG | 0.632168 | 4:+85333716 | None:intergenic |
| AGTCACTGACGGGGATGTGG+AGG | 0.642383 | 4:+85333501 | None:intergenic |
| CGTCTCACCGGACCTTCCGG+CGG | 0.657753 | 4:-85333461 | MsG0480023453.01.T01:CDS |
| AAGAATCCCTGTGATATCGG+TGG | 0.667744 | 4:+85333256 | None:intergenic |
| CGTCCATGAAGTCACTGACG+GGG | 0.670039 | 4:+85333492 | None:intergenic |
| CTGTAGACGAAGATTTAACG+TGG | 0.687892 | 4:-85333342 | MsG0480023453.01.T01:CDS |
| ACTCTACCACCGATATCACA+GGG | 0.707328 | 4:-85333262 | MsG0480023453.01.T01:CDS |
| GAGTGGTTGTCGGTGCTGGG+AGG | 0.710917 | 4:+85333550 | None:intergenic |
| GGGTTTACTTTCAGCCACCG+TGG | 0.712654 | 4:-85333144 | MsG0480023453.01.T01:CDS |
| ATACTGAACAGATCTGGCGA+CGG | 0.715619 | 4:+85333110 | None:intergenic |
| GTGGCTGAAAGTAAACCCGA+CGG | 0.739615 | 4:+85333149 | None:intergenic |
| CGGCAACGGCGAAACCACGG+TGG | 0.747976 | 4:+85333130 | None:intergenic |
| TGCACCTCAACAATCCGGCG+CGG | 0.749515 | 4:-85333432 | MsG0480023453.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| TTGTTAGAAGGAGTTGAAAT+GGG | - | Chr4:85333480-85333499 | MsG0480023453.01.T01:CDS | 30.0% | |
| GAAAAGAATCCCTGTGATAT+CGG | + | Chr4:85333549-85333568 | None:intergenic | 35.0% | |
| GATTTAACGTGGTTGTTAGA+AGG | - | Chr4:85333468-85333487 | MsG0480023453.01.T01:CDS | 35.0% | |
| GTTGTTAGAAGGAGTTGAAA+TGG | - | Chr4:85333479-85333498 | MsG0480023453.01.T01:CDS | 35.0% | |
| AAGTCCAACAGAGAGAGAAA+GGG | - | Chr4:85333427-85333446 | MsG0480023453.01.T01:CDS | 40.0% | |
| AGGAGAGAGCTTCAAATACA+AGG | - | Chr4:85333129-85333148 | MsG0480023453.01.T01:CDS | 40.0% | |
| AGTAGATGATGAGTGGTTGT+CGG | + | Chr4:85333262-85333281 | None:intergenic | 40.0% | |
| AGTTGAAATGGGTCAGTTTC+CGG | - | Chr4:85333491-85333510 | MsG0480023453.01.T01:CDS | 40.0% | |
| ATACGAGTCCGTTATGGTAT+GGG | - | Chr4:85333610-85333629 | MsG0480023453.01.T01:CDS | 40.0% | |
| CAAAGCTTCCCATACCATAA+CGG | + | Chr4:85333621-85333640 | None:intergenic | 40.0% | |
| CTGTAGACGAAGATTTAACG+TGG | - | Chr4:85333457-85333476 | MsG0480023453.01.T01:CDS | 40.0% | |
| GTTTGTGGTTCATTCATACC+AGG | + | Chr4:85333573-85333592 | None:intergenic | 40.0% | |
| TCGAAGATACTGAACAGATC+TGG | + | Chr4:85333698-85333717 | None:intergenic | 40.0% | |
| ! | TGTATTTGAAGCTCTCTCCT+AGG | + | Chr4:85333129-85333148 | None:intergenic | 40.0% |
| ! | TGTTGGACTTGTTCTTTCGA+TGG | + | Chr4:85333417-85333436 | None:intergenic | 40.0% |
| !! | GATTCTTTGTTGACTCTGAG+TGG | + | Chr4:85333168-85333187 | None:intergenic | 40.0% |
| AACGTCCATGAAGTCACTGA+CGG | + | Chr4:85333312-85333331 | None:intergenic | 45.0% | |
| AAGAATCCCTGTGATATCGG+TGG | + | Chr4:85333546-85333565 | None:intergenic | 45.0% | |
| ACTCTACCACCGATATCACA+GGG | - | Chr4:85333537-85333556 | MsG0480023453.01.T01:CDS | 45.0% | |
| ATACTGAACAGATCTGGCGA+CGG | + | Chr4:85333692-85333711 | None:intergenic | 45.0% | |
| CAAGTCCAACAGAGAGAGAA+AGG | - | Chr4:85333426-85333445 | MsG0480023453.01.T01:CDS | 45.0% | |
| CGTTATGGTATGGGAAGCTT+TGG | - | Chr4:85333619-85333638 | MsG0480023453.01.T01:CDS | 45.0% | |
| GAAGATGCACCTCAACAATC+CGG | - | Chr4:85333362-85333381 | MsG0480023453.01.T01:CDS | 45.0% | |
| GATACGAGTCCGTTATGGTA+TGG | - | Chr4:85333609-85333628 | MsG0480023453.01.T01:CDS | 45.0% | |
| GATACGGAGTAGATGATGAG+TGG | + | Chr4:85333269-85333288 | None:intergenic | 45.0% | |
| GGACTCGTATCATGCCAAAA+CGG | + | Chr4:85333600-85333619 | None:intergenic | 45.0% | |
| GTTGAAATGGGTCAGTTTCC+GGG | - | Chr4:85333492-85333511 | MsG0480023453.01.T01:CDS | 45.0% | |
| GTTTCCGGGGATATTATCTC+CGG | - | Chr4:85333506-85333525 | MsG0480023453.01.T01:CDS | 45.0% | |
| TTGAAATGGGTCAGTTTCCG+GGG | - | Chr4:85333493-85333512 | MsG0480023453.01.T01:CDS | 45.0% | |
| TTGACCCTTTCTCTCTCTGT+TGG | + | Chr4:85333434-85333453 | None:intergenic | 45.0% | |
| ! | AACCACAAACTACGCCGTTT+TGG | - | Chr4:85333583-85333602 | MsG0480023453.01.T01:CDS | 45.0% |
| ! | GTGGAGGACTTTAGGAGATA+CGG | + | Chr4:85333285-85333304 | None:intergenic | 45.0% |
| ! | TATGGTATGGGAAGCTTTGG+TGG | - | Chr4:85333622-85333641 | MsG0480023453.01.T01:CDS | 45.0% |
| ! | TCACAGGGATTCTTTTCACC+TGG | - | Chr4:85333552-85333571 | MsG0480023453.01.T01:CDS | 45.0% |
| !! | TCTTTGTTGACTCTGAGTGG+TGG | + | Chr4:85333165-85333184 | None:intergenic | 45.0% |
| ACGTCCATGAAGTCACTGAC+GGG | + | Chr4:85333311-85333330 | None:intergenic | 50.0% | |
| GACTCTACCACCGATATCAC+AGG | - | Chr4:85333536-85333555 | MsG0480023453.01.T01:CDS | 50.0% | |
| GGCATGATACGAGTCCGTTA+TGG | - | Chr4:85333604-85333623 | MsG0480023453.01.T01:CDS | 50.0% | |
| GTGGCTGAAAGTAAACCCGA+CGG | + | Chr4:85333653-85333672 | None:intergenic | 50.0% | |
| TGAAGCTCTCTCCTAGGTGA+CGG | + | Chr4:85333123-85333142 | None:intergenic | 50.0% | |
| TGCCAAAACGGCGTAGTTTG+TGG | + | Chr4:85333588-85333607 | None:intergenic | 50.0% | |
| !! | TTGTTGACTCTGAGTGGTGG+TGG | + | Chr4:85333162-85333181 | None:intergenic | 50.0% |
| AACAGATCTGGCGACGGCAA+CGG | + | Chr4:85333686-85333705 | None:intergenic | 55.0% | |
| ACGGGGATGTGGAGGACTTT+AGG | + | Chr4:85333293-85333312 | None:intergenic | 55.0% | |
| AGGGAAATTCCGGTGGGTCA+TGG | + | Chr4:85333080-85333099 | None:intergenic | 55.0% | |
| ATGGAAGCAAGTCTCGCTGC+CGG | + | Chr4:85333398-85333417 | None:intergenic | 55.0% | |
| CATCCCCGTCAGTGACTTCA+TGG | - | Chr4:85333304-85333323 | MsG0480023453.01.T01:CDS | 55.0% | |
| CGTCCATGAAGTCACTGACG+GGG | + | Chr4:85333310-85333329 | None:intergenic | 55.0% | |
| GAAATTCCGGTGGGTCATGG+TGG | + | Chr4:85333077-85333096 | None:intergenic | 55.0% | |
| GAACATCAACGCCGTCACCT+AGG | - | Chr4:85333109-85333128 | MsG0480023453.01.T01:CDS | 55.0% | |
| GACGTTGTTCAGCGTCTCAC+CGG | - | Chr4:85333326-85333345 | MsG0480023453.01.T01:CDS | 55.0% | |
| GATATCGGTGGTAGAGTCGC+CGG | + | Chr4:85333534-85333553 | None:intergenic | 55.0% | |
| GGGGATATTATCTCCGGCAC+CGG | - | Chr4:85333512-85333531 | MsG0480023453.01.T01:CDS | 55.0% | |
| GGGTTTACTTTCAGCCACCG+TGG | - | Chr4:85333655-85333674 | MsG0480023453.01.T01:CDS | 55.0% | |
| TCTTCTCCACCATGACCCAC+CGG | - | Chr4:85333068-85333087 | MsG0480023453.01.T01:CDS | 55.0% | |
| TGAAGTCACTGACGGGGATG+TGG | + | Chr4:85333304-85333323 | None:intergenic | 55.0% | |
| TGATGAGTGGTTGTCGGTGC+TGG | + | Chr4:85333256-85333275 | None:intergenic | 55.0% | |
| ! | GATGAGTGGTTGTCGGTGCT+GGG | + | Chr4:85333255-85333274 | None:intergenic | 55.0% |
| ! | GGTGCCGGAGATAATATCCC+CGG | + | Chr4:85333513-85333532 | None:intergenic | 55.0% |
| ACAATCCGGCGCGGTTTCTC+CGG | - | Chr4:85333376-85333395 | MsG0480023453.01.T01:CDS | 60.0% | |
| AGTCACTGACGGGGATGTGG+AGG | + | Chr4:85333301-85333320 | None:intergenic | 60.0% | |
| GAAACCGCGCCGGATTGTTG+AGG | + | Chr4:85333374-85333393 | None:intergenic | 60.0% | |
| GACCCACCGGAATTTCCCTC+CGG | - | Chr4:85333081-85333100 | MsG0480023453.01.T01:CDS | 60.0% | |
| GTTGATGTTCCGCTGCCGGA+GGG | + | Chr4:85333099-85333118 | None:intergenic | 60.0% | |
| TGCACCTCAACAATCCGGCG+CGG | - | Chr4:85333367-85333386 | MsG0480023453.01.T01:CDS | 60.0% | |
| TGCCGGAGGGAAATTCCGGT+GGG | + | Chr4:85333086-85333105 | None:intergenic | 60.0% | |
| TGGGTGGAAGCGGTGGTTTG+CGG | + | Chr4:85333200-85333219 | None:intergenic | 60.0% | |
| TTGAGGTGCATCTTCGCCGC+CGG | + | Chr4:85333357-85333376 | None:intergenic | 60.0% | |
| !! | AGCTTTGGTGGCGAGTCCGT+CGG | - | Chr4:85333634-85333653 | MsG0480023453.01.T01:CDS | 60.0% |
| !! | TCCTGCTGGTTGGTGGTGGT+GGG | + | Chr4:85333228-85333247 | None:intergenic | 60.0% |
| ATCTTCGCCGCCGGAAGGTC+CGG | + | Chr4:85333348-85333367 | None:intergenic | 65.0% | |
| CAGCGTCTCACCGGACCTTC+CGG | - | Chr4:85333335-85333354 | MsG0480023453.01.T01:CDS | 65.0% | |
| CCGCTGCCGGAGGGAAATTC+CGG | + | Chr4:85333090-85333109 | None:intergenic | 65.0% | |
| CCGGAATTTCCCTCCGGCAG+CGG | - | Chr4:85333087-85333106 | MsG0480023453.01.T01:CDS | 65.0% | |
| CGACGGCAACGGCGAAACCA+CGG | + | Chr4:85333675-85333694 | None:intergenic | 65.0% | |
| CGTTGATGTTCCGCTGCCGG+AGG | + | Chr4:85333100-85333119 | None:intergenic | 65.0% | |
| CTGCCGGAGGGAAATTCCGG+TGG | + | Chr4:85333087-85333106 | None:intergenic | 65.0% | |
| !! | AGGCTCCTGCTGGTTGGTGG+TGG | + | Chr4:85333232-85333251 | None:intergenic | 65.0% |
| !! | CCTGCTGGTTGGTGGTGGTG+GGG | + | Chr4:85333227-85333246 | None:intergenic | 65.0% |
| !! | CGGCGTTGATGTTCCGCTGC+CGG | + | Chr4:85333103-85333122 | None:intergenic | 65.0% |
| !! | CTCCTGCTGGTTGGTGGTGG+TGG | + | Chr4:85333229-85333248 | None:intergenic | 65.0% |
| !! | CTGCTGGTTGGTGGTGGTGG+GGG | + | Chr4:85333226-85333245 | None:intergenic | 65.0% |
| !! | GAGTGGTTGTCGGTGCTGGG+AGG | + | Chr4:85333252-85333271 | None:intergenic | 65.0% |
| !! | GCTTTGGTGGCGAGTCCGTC+GGG | - | Chr4:85333635-85333654 | MsG0480023453.01.T01:CDS | 65.0% |
| CCCCACCACCACCAACCAGC+AGG | - | Chr4:85333224-85333243 | MsG0480023453.01.T01:CDS | 70.0% | |
| CGGCAACGGCGAAACCACGG+TGG | + | Chr4:85333672-85333691 | None:intergenic | 70.0% | |
| CGTCTCACCGGACCTTCCGG+CGG | - | Chr4:85333338-85333357 | MsG0480023453.01.T01:CDS | 70.0% | |
| GCTGGGAGGCTCCTGCTGGT+TGG | + | Chr4:85333238-85333257 | None:intergenic | 70.0% | |
| GGTGCATCTTCGCCGCCGGA+AGG | + | Chr4:85333353-85333372 | None:intergenic | 70.0% | |
| GGTGGTAGAGTCGCCGGTGC+CGG | + | Chr4:85333528-85333547 | None:intergenic | 70.0% | |
| ! | GGGAGGCTCCTGCTGGTTGG+TGG | + | Chr4:85333235-85333254 | None:intergenic | 70.0% |
| !! | CTGGTTGGTGGTGGTGGGGG+CGG | + | Chr4:85333223-85333242 | None:intergenic | 70.0% |
| !! | TTGGTGGTGGTGGGGGCGGT+GGG | + | Chr4:85333219-85333238 | None:intergenic | 70.0% |
| CGCTGCCGGAGAAACCGCGC+CGG | + | Chr4:85333384-85333403 | None:intergenic | 75.0% | |
| GTGGGGGCGGTGGGTGGAAG+CGG | + | Chr4:85333210-85333229 | None:intergenic | 75.0% | |
| ! | CGGTGCTGGGAGGCTCCTGC+TGG | + | Chr4:85333242-85333261 | None:intergenic | 75.0% |
| !! | GTTGGTGGTGGTGGGGGCGG+TGG | + | Chr4:85333220-85333239 | None:intergenic | 75.0% |
| ! | GGGGCGGTGGGTGGAAGCGG+TGG | + | Chr4:85333207-85333226 | None:intergenic | 80.0% |
| !!! | GTGGTGGTGGGGGCGGTGGG+TGG | + | Chr4:85333216-85333235 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 85333066 | 85333755 | 85333066 | ID=MsG0480023453.01;Name=MsG0480023453.01 |
| Chr4 | mRNA | 85333066 | 85333755 | 85333066 | ID=MsG0480023453.01.T01;Parent=MsG0480023453.01;Name=MsG0480023453.01.T01;_AED=0.36;_eAED=0.36;_QI=0|-1|0|1|-1|0|1|0|229 |
| Chr4 | exon | 85333066 | 85333755 | 85333066 | ID=MsG0480023453.01.T01:exon:2868;Parent=MsG0480023453.01.T01 |
| Chr4 | CDS | 85333066 | 85333755 | 85333066 | ID=MsG0480023453.01.T01:cds;Parent=MsG0480023453.01.T01 |
| Chr4 | mRNA | 85333066 | 85333740 | 85333066 | ID=MsG0480023453.01.T02;Parent=MsG0480023453.01;Name=MsG0480023453.01.T02;_AED=0.36;_eAED=0.36;_QI=0|-1|0|1|-1|0|1|0|224 |
| Chr4 | exon | 85333066 | 85333740 | 85333066 | ID=MsG0480023453.01.T02:exon:2869;Parent=MsG0480023453.01.T02 |
| Chr4 | CDS | 85333066 | 85333740 | 85333066 | ID=MsG0480023453.01.T02:cds;Parent=MsG0480023453.01.T02 |
| Chr4 | mRNA | 85333066 | 85333455 | 85333066 | ID=MsG0480023453.01.T03;Parent=MsG0480023453.01;Name=MsG0480023453.01.T03;_AED=0.42;_eAED=0.42;_QI=0|-1|0|1|-1|0|1|0|129 |
| Chr4 | exon | 85333066 | 85333455 | 85333066 | ID=MsG0480023453.01.T03:exon:2870;Parent=MsG0480023453.01.T03 |
| Chr4 | CDS | 85333066 | 85333455 | 85333066 | ID=MsG0480023453.01.T03:cds;Parent=MsG0480023453.01.T03 |
| Gene Sequence |
| Protein sequence |
