Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015849.01.T01 | XP_003601292.2 | 76.636 | 107 | 8 | 1 | 1 | 107 | 1 | 90 | 6.58E-35 | 129 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015849.01.T01 | G7J5Z9 | 76.636 | 107 | 8 | 1 | 1 | 107 | 1 | 90 | 3.14e-35 | 129 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048761.01 | MsG0380015849.01 | 0.804020 | 2.639823e-49 | 1.346579e-46 |
| MsG0080048849.01 | MsG0380015849.01 | -0.803881 | 2.820733e-49 | 1.433790e-46 |
| MsG0080048878.01 | MsG0380015849.01 | -0.818444 | 1.953996e-52 | 1.463044e-49 |
| MsG0080049011.01 | MsG0380015849.01 | -0.801251 | 9.832033e-49 | 4.673415e-46 |
| MsG0080049069.01 | MsG0380015849.01 | -0.846324 | 2.333721e-59 | 4.001543e-56 |
| MsG0180000010.01 | MsG0380015849.01 | 0.806249 | 9.016330e-50 | 4.870461e-47 |
| MsG0180000240.01 | MsG0380015849.01 | 0.859040 | 5.443343e-63 | 1.417889e-59 |
| MsG0180000355.01 | MsG0380015849.01 | -0.800705 | 1.271558e-48 | 5.960661e-46 |
| MsG0180000482.01 | MsG0380015849.01 | -0.819365 | 1.206650e-52 | 9.265972e-50 |
| MsG0180000544.01 | MsG0380015849.01 | 0.840078 | 1.079760e-57 | 1.521116e-54 |
| MsG0180000814.01 | MsG0380015849.01 | -0.821013 | 5.058633e-53 | 4.067605e-50 |
| MsG0180001886.01 | MsG0380015849.01 | -0.830810 | 2.381162e-55 | 2.536413e-52 |
| MsG0180003246.01 | MsG0380015849.01 | 0.833612 | 4.825867e-56 | 5.586274e-53 |
| MsG0180003309.01 | MsG0380015849.01 | 0.829443 | 5.132965e-55 | 5.254091e-52 |
| MsG0180003942.01 | MsG0380015849.01 | 0.813495 | 2.487305e-51 | 1.626900e-48 |
| MsG0180004493.01 | MsG0380015849.01 | -0.817360 | 3.433937e-52 | 2.495387e-49 |
| MsG0180004541.01 | MsG0380015849.01 | -0.812560 | 3.986915e-51 | 2.543127e-48 |
| MsG0180004599.01 | MsG0380015849.01 | -0.800520 | 1.386698e-48 | 6.470306e-46 |
| MsG0180004605.01 | MsG0380015849.01 | 0.817953 | 2.524049e-52 | 1.864208e-49 |
| MsG0180004659.01 | MsG0380015849.01 | 0.820000 | 8.642940e-53 | 6.756281e-50 |
| MsG0180005881.01 | MsG0380015849.01 | 0.864421 | 1.231144e-64 | 3.863376e-61 |
| MsG0180005964.01 | MsG0380015849.01 | -0.804513 | 2.083806e-49 | 1.076432e-46 |
| MsG0280006306.01 | MsG0380015849.01 | 0.901929 | 1.629338e-78 | 2.251497e-74 |
| MsG0280006346.01 | MsG0380015849.01 | 0.801118 | 1.047021e-48 | 4.960126e-46 |
| MsG0280006418.01 | MsG0380015849.01 | 0.808802 | 2.589632e-50 | 1.494774e-47 |
| MsG0280010604.01 | MsG0380015849.01 | 0.838980 | 2.083300e-57 | 2.836773e-54 |
| MsG0280011059.01 | MsG0380015849.01 | 0.888195 | 7.318438e-73 | 5.612838e-69 |
| MsG0380014225.01 | MsG0380015849.01 | 0.917119 | 7.824762e-86 | 2.221730e-81 |
| MsG0380014770.01 | MsG0380015849.01 | -0.805716 | 1.167014e-49 | 6.218738e-47 |
| MsG0380015056.01 | MsG0380015849.01 | 0.810249 | 1.266163e-50 | 7.594385e-48 |
| MsG0380015066.01 | MsG0380015849.01 | 0.823060 | 1.697108e-53 | 1.445831e-50 |
| MsG0380015800.01 | MsG0380015849.01 | 0.815330 | 9.772227e-52 | 6.717462e-49 |
| MsG0380015847.01 | MsG0380015849.01 | 0.825493 | 4.547940e-54 | 4.151809e-51 |
| MsG0380015849.01 | MsG0380015891.01 | -0.826399 | 2.771499e-54 | 2.596298e-51 |
| MsG0380015849.01 | MsG0380016191.01 | 0.820856 | 5.498101e-53 | 4.401424e-50 |
| MsG0380015849.01 | MsG0380016347.01 | 0.849224 | 3.708978e-60 | 6.984067e-57 |
| MsG0380015849.01 | MsG0380016820.01 | -0.812422 | 4.274806e-51 | 2.716939e-48 |
| MsG0380015849.01 | MsG0380016823.01 | 0.809758 | 1.615341e-50 | 9.565534e-48 |
| MsG0380015849.01 | MsG0380016828.01 | 0.819508 | 1.119195e-52 | 8.629640e-50 |
| MsG0380015849.01 | MsG0380017263.01 | 0.862418 | 5.139351e-64 | 1.504171e-60 |
| MsG0380015849.01 | MsG0380017338.01 | -0.801933 | 7.126111e-49 | 3.446072e-46 |
| MsG0380015849.01 | MsG0380017551.01 | 0.819716 | 1.003395e-52 | 7.781740e-50 |
| MsG0380015849.01 | MsG0380017878.01 | 0.845734 | 3.375633e-59 | 5.680176e-56 |
| MsG0380015849.01 | MsG0380017891.01 | 0.815063 | 1.120238e-51 | 7.644300e-49 |
| MsG0380015849.01 | MsG0480018236.01 | -0.814523 | 1.475368e-51 | 9.922752e-49 |
| MsG0380015849.01 | MsG0480018426.01 | -0.814451 | 1.530414e-51 | 1.027260e-48 |
| MsG0380015849.01 | MsG0480018847.01 | -0.811621 | 6.388152e-51 | 3.973323e-48 |
| MsG0380015849.01 | MsG0480018850.01 | -0.829148 | 6.052039e-55 | 6.141443e-52 |
| MsG0380015849.01 | MsG0480018883.01 | -0.824045 | 9.983718e-54 | 8.744281e-51 |
| MsG0380015849.01 | MsG0480018911.01 | -0.813517 | 2.459569e-51 | 1.609663e-48 |
| MsG0380015849.01 | MsG0480019689.01 | 0.822480 | 2.316734e-53 | 1.941440e-50 |
| MsG0380015849.01 | MsG0480019984.01 | 0.801306 | 9.584248e-49 | 4.561818e-46 |
| MsG0380015849.01 | MsG0480020327.01 | 0.821949 | 3.075279e-53 | 2.538289e-50 |
| MsG0380015849.01 | MsG0480020788.01 | -0.824742 | 6.845670e-54 | 6.117611e-51 |
| MsG0380015849.01 | MsG0480020935.01 | 0.822298 | 2.552680e-53 | 2.128149e-50 |
| MsG0380015849.01 | MsG0480021280.01 | -0.816899 | 4.359785e-52 | 3.128413e-49 |
| MsG0380015849.01 | MsG0480021468.01 | -0.836528 | 8.875269e-57 | 1.121449e-53 |
| MsG0380015849.01 | MsG0480021776.01 | 0.869338 | 3.337965e-66 | 1.248228e-62 |
| MsG0380015849.01 | MsG0480022615.01 | 0.830640 | 2.621438e-55 | 2.778251e-52 |
| MsG0380015849.01 | MsG0480022872.01 | 0.841437 | 4.754947e-58 | 6.987033e-55 |
| MsG0380015849.01 | MsG0480023073.01 | -0.804017 | 2.642654e-49 | 1.347956e-46 |
| MsG0380015849.01 | MsG0480023348.01 | 0.804468 | 2.129229e-49 | 1.098659e-46 |
| MsG0380015849.01 | MsG0480023453.01 | 0.826115 | 3.238892e-54 | 3.009635e-51 |
| MsG0380015849.01 | MsG0480023652.01 | -0.812313 | 4.513932e-51 | 2.860489e-48 |
| MsG0380015849.01 | MsG0480023660.01 | -0.822908 | 1.841768e-53 | 1.562311e-50 |
| MsG0380015849.01 | MsG0480023936.01 | 0.810905 | 9.134903e-51 | 5.575789e-48 |
| MsG0380015849.01 | MsG0480023943.01 | -0.810101 | 1.362496e-50 | 8.140909e-48 |
| MsG0380015849.01 | MsG0480023994.01 | -0.803998 | 2.667022e-49 | 1.359727e-46 |
| MsG0380015849.01 | MsG0580024363.01 | 0.803719 | 3.048677e-49 | 1.543080e-46 |
| MsG0380015849.01 | MsG0580024535.01 | 0.823479 | 1.355212e-53 | 1.168219e-50 |
| MsG0380015849.01 | MsG0580024790.01 | 0.846706 | 1.834665e-59 | 3.185733e-56 |
| MsG0380015849.01 | MsG0580024928.01 | 0.824027 | 1.007924e-53 | 8.823649e-51 |
| MsG0380015849.01 | MsG0580024930.01 | 0.843230 | 1.591861e-58 | 2.474162e-55 |
| MsG0380015849.01 | MsG0580025182.01 | 0.841261 | 5.291142e-58 | 7.731115e-55 |
| MsG0380015849.01 | MsG0580025369.01 | 0.837233 | 5.866183e-57 | 7.571472e-54 |
| MsG0380015849.01 | MsG0580025407.01 | 0.833729 | 4.511447e-56 | 5.240702e-53 |
| MsG0380015849.01 | MsG0580025561.01 | 0.804973 | 1.670241e-49 | 8.731805e-47 |
| MsG0380015849.01 | MsG0580025627.01 | -0.800244 | 1.578348e-48 | 7.313112e-46 |
| MsG0380015849.01 | MsG0580025756.01 | -0.804404 | 2.195891e-49 | 1.131167e-46 |
| MsG0380015849.01 | MsG0580026340.01 | -0.802653 | 5.065288e-49 | 2.494790e-46 |
| MsG0380015849.01 | MsG0580026718.01 | -0.821893 | 3.169031e-53 | 2.611634e-50 |
| MsG0380015849.01 | MsG0580028613.01 | 0.885211 | 9.889775e-72 | 6.728185e-68 |
| MsG0380015849.01 | MsG0580029514.01 | 0.868064 | 8.615299e-66 | 3.075030e-62 |
| MsG0380015849.01 | MsG0580029924.01 | -0.806268 | 8.932995e-50 | 4.827854e-47 |
| MsG0380015849.01 | MsG0580029925.01 | -0.804617 | 1.982713e-49 | 1.026988e-46 |
| MsG0380015849.01 | MsG0580029999.01 | 0.855985 | 4.367866e-62 | 1.026883e-58 |
| MsG0380015849.01 | MsG0680030764.01 | -0.810665 | 1.029340e-50 | 6.242737e-48 |
| MsG0380015849.01 | MsG0680031334.01 | -0.802624 | 5.135945e-49 | 2.527782e-46 |
| MsG0380015849.01 | MsG0680031376.01 | 0.807762 | 4.315164e-50 | 2.423745e-47 |
| MsG0380015849.01 | MsG0680031446.01 | 0.835524 | 1.596292e-56 | 1.956943e-53 |
| MsG0380015849.01 | MsG0680031468.01 | -0.811321 | 7.423595e-51 | 4.580809e-48 |
| MsG0380015849.01 | MsG0680031621.01 | -0.804743 | 1.865628e-49 | 9.696069e-47 |
| MsG0380015849.01 | MsG0680031815.01 | -0.809309 | 2.016881e-50 | 1.180083e-47 |
| MsG0380015849.01 | MsG0680032510.01 | 0.855103 | 7.894957e-62 | 1.802335e-58 |
| MsG0380015849.01 | MsG0680034230.01 | -0.804966 | 1.676316e-49 | 8.762007e-47 |
| MsG0380015849.01 | MsG0680035765.01 | -0.801163 | 1.025022e-48 | 4.861400e-46 |
| MsG0380015849.01 | MsG0780036593.01 | -0.810640 | 1.042597e-50 | 6.318576e-48 |
| MsG0380015849.01 | MsG0780036978.01 | -0.833801 | 4.327948e-56 | 5.039088e-53 |
| MsG0380015849.01 | MsG0780037082.01 | -0.801191 | 1.011730e-48 | 4.801629e-46 |
| MsG0380015849.01 | MsG0780037330.01 | -0.826838 | 2.177698e-54 | 2.065738e-51 |
| MsG0380015849.01 | MsG0780038309.01 | 0.832376 | 9.791194e-56 | 1.092368e-52 |
| MsG0380015849.01 | MsG0780038473.01 | 0.803302 | 3.719988e-49 | 1.862767e-46 |
| MsG0380015849.01 | MsG0780038584.01 | 0.840625 | 7.770775e-58 | 1.113277e-54 |
| MsG0380015849.01 | MsG0780038847.01 | -0.801874 | 7.328554e-49 | 3.538858e-46 |
| MsG0380015849.01 | MsG0780039867.01 | 0.868582 | 5.866596e-66 | 2.133325e-62 |
| MsG0380015849.01 | MsG0780039997.01 | 0.805059 | 1.602758e-49 | 8.397299e-47 |
| MsG0380015849.01 | MsG0780040374.01 | -0.830174 | 3.407770e-55 | 3.563067e-52 |
| MsG0380015849.01 | MsG0780040566.01 | 0.839674 | 1.376094e-57 | 1.914017e-54 |
| MsG0380015849.01 | MsG0780040576.01 | 0.810422 | 1.162144e-50 | 7.001857e-48 |
| MsG0380015849.01 | MsG0780040888.01 | -0.816576 | 5.148917e-52 | 3.662262e-49 |
| MsG0380015849.01 | MsG0780041015.01 | 0.845766 | 3.309854e-59 | 5.575286e-56 |
| MsG0380015849.01 | MsG0780041729.01 | 0.832044 | 1.183302e-55 | 1.307358e-52 |
| MsG0380015849.01 | MsG0780041747.01 | -0.825856 | 3.732106e-54 | 3.442762e-51 |
| MsG0380015849.01 | MsG0880041861.01 | -0.800099 | 1.689370e-48 | 7.798706e-46 |
| MsG0380015849.01 | MsG0880042062.01 | -0.826358 | 2.834506e-54 | 2.652278e-51 |
| MsG0380015849.01 | MsG0880042857.01 | -0.814015 | 1.910628e-51 | 1.267383e-48 |
| MsG0380015849.01 | MsG0880042987.01 | 0.841239 | 5.360191e-58 | 7.826506e-55 |
| MsG0380015849.01 | MsG0880043829.01 | -0.804267 | 2.344361e-49 | 1.203432e-46 |
| MsG0380015849.01 | MsG0880044394.01 | -0.820704 | 5.960063e-53 | 4.750633e-50 |
| MsG0380015849.01 | MsG0880044611.01 | 0.843635 | 1.241511e-58 | 1.954712e-55 |
| MsG0380015849.01 | MsG0880044975.01 | -0.804486 | 2.110778e-49 | 1.089644e-46 |
| MsG0380015849.01 | MsG0880045010.01 | 0.804636 | 1.964645e-49 | 1.018121e-46 |
| MsG0380015849.01 | MsG0880045555.01 | 0.818516 | 1.881661e-52 | 1.411585e-49 |
| MsG0380015849.01 | MsG0880045605.01 | 0.801385 | 9.232314e-49 | 4.403072e-46 |
| MsG0380015849.01 | MsG0880045707.01 | 0.800306 | 1.533553e-48 | 7.116919e-46 |
| MsG0380015849.01 | MsG0880045992.01 | -0.809330 | 1.995895e-50 | 1.168495e-47 |
| MsG0380015849.01 | MsG0880046333.01 | 0.804806 | 1.810447e-49 | 9.424234e-47 |
| MsG0380015849.01 | MsG0880046334.01 | 0.809202 | 2.125693e-50 | 1.240295e-47 |
| MsG0380015849.01 | MsG0880046384.01 | 0.845642 | 3.575195e-59 | 5.997645e-56 |
| MsG0380015849.01 | MsG0880046457.01 | -0.824835 | 6.506255e-54 | 5.829697e-51 |
| MsG0380015849.01 | MsG0880046569.01 | 0.813576 | 2.386294e-51 | 1.564230e-48 |
| MsG0380015849.01 | MsG0880046790.01 | -0.803289 | 3.742394e-49 | 1.873397e-46 |
| MsG0380015849.01 | MsG0880046963.01 | 0.824572 | 7.508177e-54 | 6.676510e-51 |
| MsG0380015849.01 | MsG0880047045.01 | -0.866348 | 3.045120e-65 | 1.023088e-61 |
| MsG0380015849.01 | MsG0880047046.01 | -0.843122 | 1.700912e-58 | 2.634601e-55 |
| MsG0380015849.01 | MsG0880047052.01 | -0.826920 | 2.081329e-54 | 1.979262e-51 |
| MsG0380015849.01 | MsG0880047481.01 | 0.803122 | 4.053380e-49 | 2.020361e-46 |
| MsG0380015849.01 | MsG0880047689.01 | 0.823249 | 1.533283e-53 | 1.313106e-50 |
| MsG0380015849.01 | MsG0880047696.01 | -0.804719 | 1.887474e-49 | 9.803266e-47 |
| MsG0380015849.01 | MsG0880047703.01 | -0.807513 | 4.872337e-50 | 2.719190e-47 |
| MsG0380015849.01 | MsG0880047763.01 | -0.808433 | 3.104881e-50 | 1.775122e-47 |
| MsG0380015849.01 | MsG0880047764.01 | -0.822450 | 2.354130e-53 | 1.971157e-50 |
| MsG0280006526.01 | MsG0380015849.01 | 0.807558 | 4.765886e-50 | 2.662738e-47 |
| MsG0280007062.01 | MsG0380015849.01 | -0.843158 | 1.664080e-58 | 2.580410e-55 |
| MsG0280007193.01 | MsG0380015849.01 | 0.875091 | 4.049296e-68 | 1.867219e-64 |
| MsG0280007723.01 | MsG0380015849.01 | 0.815479 | 9.050146e-52 | 6.247157e-49 |
| MsG0280007743.01 | MsG0380015849.01 | 0.825310 | 5.027381e-54 | 4.565677e-51 |
| MsG0280008660.01 | MsG0380015849.01 | 0.896571 | 3.246998e-76 | 3.532799e-72 |
| MsG0280008928.01 | MsG0380015849.01 | -0.842470 | 2.536343e-58 | 3.849749e-55 |
| MsG0280008929.01 | MsG0380015849.01 | -0.832339 | 1.000443e-55 | 1.114793e-52 |
| MsG0280009395.01 | MsG0380015849.01 | 0.823112 | 1.650685e-53 | 1.408339e-50 |
| MsG0280009637.01 | MsG0380015849.01 | 0.802788 | 4.750921e-49 | 2.348180e-46 |
| MsG0280009685.01 | MsG0380015849.01 | -0.815856 | 7.461188e-52 | 5.203101e-49 |
| MsG0280010288.01 | MsG0380015849.01 | -0.801044 | 1.084297e-48 | 5.127267e-46 |
| MsG0280010484.01 | MsG0380015849.01 | 0.834339 | 3.174470e-56 | 3.756156e-53 |
| MsG0280010532.01 | MsG0380015849.01 | 0.822330 | 2.510078e-53 | 2.094484e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015849.01.T01 | MTR_3g078610 | 76.636 | 107 | 8 | 1 | 1 | 107 | 1 | 90 | 7.96e-39 | 129 |
| MsG0380015849.01.T01 | MTR_3g078610 | 76.636 | 107 | 8 | 1 | 1 | 107 | 1 | 90 | 8.37e-39 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 34 sgRNAs with CRISPR-Local
Find 36 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGAGGAGGTTGTTGAGAT+TGG | 0.306031 | 3:-75830173 | None:intergenic |
| CGGAGATGACGGTGGGGAAG+GGG | 0.343868 | 3:-75830116 | None:intergenic |
| CGGTGGGGAAGGGGAGGAAG+AGG | 0.363507 | 3:-75830107 | None:intergenic |
| CCAATTCTTCGCATCCTCAT+TGG | 0.380648 | 3:+75830047 | MsG0380015849.01.T01:CDS |
| CCAATGAGGATGCGAAGAAT+TGG | 0.384540 | 3:-75830047 | None:intergenic |
| TGGGGAAGGGGAGGAAGAGG+TGG | 0.403774 | 3:-75830104 | None:intergenic |
| GTTGAGATTGGAGGCGGTAG+TGG | 0.410912 | 3:-75830161 | None:intergenic |
| GGCGGTAGTGGTGGCGTTTG+CGG | 0.421186 | 3:-75830149 | None:intergenic |
| AGTGGTGGCGTTTGCGGCGG+CGG | 0.425892 | 3:-75830143 | None:intergenic |
| TCGGAGATGACGGTGGGGAA+GGG | 0.440083 | 3:-75830117 | None:intergenic |
| AATTCATTTCTTCAATTGCA+TGG | 0.442372 | 3:+75830255 | MsG0380015849.01.T01:CDS |
| AGATGACGGTGGGGAAGGGG+AGG | 0.442459 | 3:-75830113 | None:intergenic |
| ATCGGAGATGACGGTGGGGA+AGG | 0.452043 | 3:-75830118 | None:intergenic |
| GCGTTTGCGGCGGCGGAGAT+CGG | 0.463231 | 3:-75830136 | None:intergenic |
| CGGAGATCGGAGATGACGGT+GGG | 0.504404 | 3:-75830123 | None:intergenic |
| GAGGTTGTTGAGATTGGAGG+CGG | 0.509019 | 3:-75830167 | None:intergenic |
| ACCCGCGGATTCACTTTCGC+TGG | 0.514723 | 3:+75830217 | MsG0380015849.01.T01:CDS |
| GAGGAGGTTGTTGAGATTGG+AGG | 0.537669 | 3:-75830170 | None:intergenic |
| GGTAGTGGTGGCGTTTGCGG+CGG | 0.570718 | 3:-75830146 | None:intergenic |
| GGAAATTTGATTGAAAATCG+AGG | 0.584509 | 3:+75830366 | MsG0380015849.01.T01:CDS |
| ACAACCTCCTCACTGCTCCA+TGG | 0.587232 | 3:+75830182 | MsG0380015849.01.T01:CDS |
| CGGGTTTGAGAAGCGGACCA+TGG | 0.595025 | 3:-75830199 | None:intergenic |
| GCGGCGGAGATCGGAGATGA+CGG | 0.602075 | 3:-75830127 | None:intergenic |
| GCGGAGATCGGAGATGACGG+TGG | 0.606744 | 3:-75830124 | None:intergenic |
| ATCCAGCGAAAGTGAATCCG+CGG | 0.606920 | 3:-75830219 | None:intergenic |
| TATCACTGAAACTCAGCAAG+AGG | 0.610373 | 3:+75830020 | MsG0380015849.01.T01:CDS |
| GAATCCGCGGGTTTGAGAAG+CGG | 0.621886 | 3:-75830206 | None:intergenic |
| GAGATTGGAGGCGGTAGTGG+TGG | 0.631668 | 3:-75830158 | None:intergenic |
| TCCAGCGAAAGTGAATCCGC+GGG | 0.636866 | 3:-75830218 | None:intergenic |
| GGAGATCGGAGATGACGGTG+GGG | 0.638493 | 3:-75830122 | None:intergenic |
| TTTGATGAGATTCTCCAATG+AGG | 0.640483 | 3:-75830061 | None:intergenic |
| CGGACCATGGAGCAGTGAGG+AGG | 0.665229 | 3:-75830186 | None:intergenic |
| TGGTCCGCTTCTCAAACCCG+CGG | 0.679979 | 3:+75830202 | MsG0380015849.01.T01:CDS |
| AAGCGGACCATGGAGCAGTG+AGG | 0.702686 | 3:-75830189 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AATTCATTTCTTCAATTGCA+TGG | + | Chr3:75830255-75830274 | MsG0380015849.01.T01:CDS | 25.0% |
| GGAAATTTGATTGAAAATCG+AGG | + | Chr3:75830366-75830385 | MsG0380015849.01.T01:CDS | 30.0% | |
| TTTGATGAGATTCTCCAATG+AGG | - | Chr3:75830064-75830083 | None:intergenic | 35.0% | |
| !!! | ACTGTTTCTACTTGTTTTGC+AGG | + | Chr3:75830335-75830354 | MsG0380015849.01.T01:intron | 35.0% |
| TATCACTGAAACTCAGCAAG+AGG | + | Chr3:75830020-75830039 | MsG0380015849.01.T01:CDS | 40.0% | |
| !!! | CTTGTTTTGCAGGTTAGAGT+TGG | + | Chr3:75830345-75830364 | MsG0380015849.01.T01:intron | 40.0% |
| AGTGAGGAGGTTGTTGAGAT+TGG | - | Chr3:75830176-75830195 | None:intergenic | 45.0% | |
| CCAATGAGGATGCGAAGAAT+TGG | - | Chr3:75830050-75830069 | None:intergenic | 45.0% | |
| CCAATTCTTCGCATCCTCAT+TGG | + | Chr3:75830047-75830066 | MsG0380015849.01.T01:CDS | 45.0% | |
| ATCCAGCGAAAGTGAATCCG+CGG | - | Chr3:75830222-75830241 | None:intergenic | 50.0% | |
| GAGGAGGTTGTTGAGATTGG+AGG | - | Chr3:75830173-75830192 | None:intergenic | 50.0% | |
| GAGGTTGTTGAGATTGGAGG+CGG | - | Chr3:75830170-75830189 | None:intergenic | 50.0% | |
| ACAACCTCCTCACTGCTCCA+TGG | + | Chr3:75830182-75830201 | MsG0380015849.01.T01:CDS | 55.0% | |
| GAATCCGCGGGTTTGAGAAG+CGG | - | Chr3:75830209-75830228 | None:intergenic | 55.0% | |
| GTTGAGATTGGAGGCGGTAG+TGG | - | Chr3:75830164-75830183 | None:intergenic | 55.0% | |
| TCCAGCGAAAGTGAATCCGC+GGG | - | Chr3:75830221-75830240 | None:intergenic | 55.0% | |
| AAGCGGACCATGGAGCAGTG+AGG | - | Chr3:75830192-75830211 | None:intergenic | 60.0% | |
| ACCCGCGGATTCACTTTCGC+TGG | + | Chr3:75830217-75830236 | MsG0380015849.01.T01:CDS | 60.0% | |
| CGGGTTTGAGAAGCGGACCA+TGG | - | Chr3:75830202-75830221 | None:intergenic | 60.0% | |
| TGGTCCGCTTCTCAAACCCG+CGG | + | Chr3:75830202-75830221 | MsG0380015849.01.T01:CDS | 60.0% | |
| ! | ATCGGAGATGACGGTGGGGA+AGG | - | Chr3:75830121-75830140 | None:intergenic | 60.0% |
| ! | CGGAGATCGGAGATGACGGT+GGG | - | Chr3:75830126-75830145 | None:intergenic | 60.0% |
| ! | GAGATTGGAGGCGGTAGTGG+TGG | - | Chr3:75830161-75830180 | None:intergenic | 60.0% |
| ! | GGAGATCGGAGATGACGGTG+GGG | - | Chr3:75830125-75830144 | None:intergenic | 60.0% |
| ! | TCGGAGATGACGGTGGGGAA+GGG | - | Chr3:75830120-75830139 | None:intergenic | 60.0% |
| CGGACCATGGAGCAGTGAGG+AGG | - | Chr3:75830189-75830208 | None:intergenic | 65.0% | |
| GCGGCGGAGATCGGAGATGA+CGG | - | Chr3:75830130-75830149 | None:intergenic | 65.0% | |
| TGGGGAAGGGGAGGAAGAGG+TGG | - | Chr3:75830107-75830126 | None:intergenic | 65.0% | |
| ! | AGATGACGGTGGGGAAGGGG+AGG | - | Chr3:75830116-75830135 | None:intergenic | 65.0% |
| ! | CGGAGATGACGGTGGGGAAG+GGG | - | Chr3:75830119-75830138 | None:intergenic | 65.0% |
| ! | GCGGAGATCGGAGATGACGG+TGG | - | Chr3:75830127-75830146 | None:intergenic | 65.0% |
| ! | GGCGGTAGTGGTGGCGTTTG+CGG | - | Chr3:75830152-75830171 | None:intergenic | 65.0% |
| ! | GGTAGTGGTGGCGTTTGCGG+CGG | - | Chr3:75830149-75830168 | None:intergenic | 65.0% |
| CGGTGGGGAAGGGGAGGAAG+AGG | - | Chr3:75830110-75830129 | None:intergenic | 70.0% | |
| GCGTTTGCGGCGGCGGAGAT+CGG | - | Chr3:75830139-75830158 | None:intergenic | 70.0% | |
| ! | AGTGGTGGCGTTTGCGGCGG+CGG | - | Chr3:75830146-75830165 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 75830010 | 75830404 | 75830010 | ID=MsG0380015849.01;Name=MsG0380015849.01 |
| Chr3 | mRNA | 75830010 | 75830404 | 75830010 | ID=MsG0380015849.01.T01;Parent=MsG0380015849.01;Name=MsG0380015849.01.T01;_AED=0.50;_eAED=0.58;_QI=0|0|0|1|0|0|2|0|111 |
| Chr3 | exon | 75830010 | 75830297 | 75830010 | ID=MsG0380015849.01.T01:exon:24854;Parent=MsG0380015849.01.T01 |
| Chr3 | exon | 75830357 | 75830404 | 75830357 | ID=MsG0380015849.01.T01:exon:24855;Parent=MsG0380015849.01.T01 |
| Chr3 | CDS | 75830010 | 75830297 | 75830010 | ID=MsG0380015849.01.T01:cds;Parent=MsG0380015849.01.T01 |
| Chr3 | CDS | 75830357 | 75830404 | 75830357 | ID=MsG0380015849.01.T01:cds;Parent=MsG0380015849.01.T01 |
| Gene Sequence |
| Protein sequence |
