AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023805.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023805.01.T01 MTR_8g102530 93.976 166 2 1 1 166 1 158 4.78e-113 319
MsG0480023805.01.T01 MTR_8g102530 89.157 166 1 2 1 166 1 149 1.71e-103 294
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023805.01.T01 AT5G15750 75.301 166 33 1 1 166 1 158 5.29e-91 263

Find 45 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTATGGTTATCTCCTTTAA+TGG 0.197442 4:+90032066 MsG0480023805.01.T01:three_prime_UTR
GCTGGGTCTGTAATTGTATT+TGG 0.229997 4:-90031847 None:intergenic
TGATATGACTGATAAGCTTT+TGG 0.287922 4:+90030056 MsG0480023805.01.T01:CDS
GTATGGTTATCTCCTTTAAT+GGG 0.342327 4:+90032067 MsG0480023805.01.T01:three_prime_UTR
AAGCACCTTTCTCTTTATCT+TGG 0.381545 4:-90031919 None:intergenic
CTATGATTTAATGAATTAGT+TGG 0.383623 4:+90031965 MsG0480023805.01.T01:three_prime_UTR
ACGTAGGCTCTCAACTGTTT+TGG 0.388493 4:+90031753 MsG0480023805.01.T01:CDS
CTTCCATGTTTCTAGTTACA+AGG 0.421817 4:-90031873 None:intergenic
TTTCATGACAGTTACAATAT+GGG 0.424343 4:+90030669 MsG0480023805.01.T01:intron
ATCAACTCGAAAAGGATCCT+TGG 0.424814 4:-90030037 None:intergenic
GGGTAATGAAATTTGGATGT+AGG 0.430223 4:+90032134 MsG0480023805.01.T01:three_prime_UTR
TTTCTAGTTACAAGGTAAGC+TGG 0.444914 4:-90031865 None:intergenic
ACATAGTGTGATGCTTTGCC+TGG 0.454332 4:-90030703 None:intergenic
GAATCATTCCATATTATGAC+GGG 0.465894 4:+90032112 MsG0480023805.01.T01:three_prime_UTR
AAATTCATCCACAGATGTCT+TGG 0.484798 4:-90032037 None:intergenic
ATGCCGGATGGTTCAAAAGT+TGG 0.484865 4:+90029990 MsG0480023805.01.T01:CDS
TCAACTCGAAAAGGATCCTT+GGG 0.487619 4:-90030036 None:intergenic
TAACCGTGTCAGCCTTCTGC+AGG 0.495522 4:+90030733 MsG0480023805.01.T01:CDS
AATCGTCCCGTCCGGTAACA+TGG 0.517679 4:-90029829 None:intergenic
ATGCAGCGCTACCATGTTAC+CGG 0.520504 4:+90029818 MsG0480023805.01.T01:CDS
TCAGTCATATCAACTCGAAA+AGG 0.520506 4:-90030045 None:intergenic
TTCTAGTTACAAGGTAAGCT+GGG 0.525625 4:-90031864 None:intergenic
AGTGTGATGCTTTGCCTGGT+TGG 0.526362 4:-90030699 None:intergenic
AGAATCATTCCATATTATGA+CGG 0.558801 4:+90032111 MsG0480023805.01.T01:three_prime_UTR
TTCTTCCAAGATAAAGAGAA+AGG 0.564085 4:+90031914 MsG0480023805.01.T01:exon
TTGGAATGGAAGAGAGAAGG+GGG 0.573733 4:+90029776 MsG0480023805.01.T01:CDS
ACATGGAAGACTTGATTACA+TGG 0.574767 4:+90031887 MsG0480023805.01.T01:CDS
AGCTAAAGCATCATGAGCAA+AGG 0.591441 4:+90029732 MsG0480023805.01.T01:CDS
GCGCTACCATGTTACCGGAC+GGG 0.593016 4:+90029823 MsG0480023805.01.T01:CDS
TTACCTGCAGAAGGCTGACA+CGG 0.596614 4:-90030736 None:intergenic
GAACAAGGACATGTTCGAGT+TGG 0.597698 4:+90031823 MsG0480023805.01.T01:CDS
GGTAAACACTGTGAAACAGA+TGG 0.604130 4:+90030011 MsG0480023805.01.T01:CDS
GCTTCAGTACAATGACAAGT+TGG 0.608210 4:+90031938 MsG0480023805.01.T01:three_prime_UTR
ATAGGTATTCGAGTATATGC+CGG 0.611429 4:+90029974 MsG0480023805.01.T01:intron
TGTGAAACAGATGGATCCCA+AGG 0.635519 4:+90030020 MsG0480023805.01.T01:CDS
TTTGGAATGGAAGAGAGAAG+GGG 0.646764 4:+90029775 MsG0480023805.01.T01:CDS
TTACCTTGTAACTAGAAACA+TGG 0.656200 4:+90031870 MsG0480023805.01.T01:CDS
ATCATTCCATATTATGACGG+GGG 0.657589 4:+90032114 MsG0480023805.01.T01:three_prime_UTR
AGCGCTACCATGTTACCGGA+CGG 0.657895 4:+90029822 MsG0480023805.01.T01:CDS
ATATGGGTGTGATTCCAACC+AGG 0.661105 4:+90030685 MsG0480023805.01.T01:CDS
GCTGTAACTTATATTGAACA+AGG 0.683794 4:+90031808 MsG0480023805.01.T01:CDS
GTATTCGAGTATATGCCGGA+TGG 0.685170 4:+90029978 MsG0480023805.01.T01:CDS
AATCATTCCATATTATGACG+GGG 0.685693 4:+90032113 MsG0480023805.01.T01:three_prime_UTR
TGGAAGACTTGATTACATGG+TGG 0.713514 4:+90031890 MsG0480023805.01.T01:CDS
TGAATGAACCAAGACATCTG+TGG 0.764706 4:+90032029 MsG0480023805.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATTTGTTTCATAATTA+TGG + Chr4:90030137-90030156 MsG0480023805.01.T01:intron 10.0%
!!! TATTTTTCTTTTTTTTAGTT+TGG + Chr4:90029900-90029919 MsG0480023805.01.T01:intron 10.0%
!! AAATTTAATGCATGAAAAAT+AGG + Chr4:90031442-90031461 MsG0480023805.01.T01:intron 15.0%
!! TAAGTTATATAACAAAACTA+TGG - Chr4:90030455-90030474 None:intergenic 15.0%
!! TAGTTTATTCAAACATAAAA+TGG - Chr4:90031423-90031442 None:intergenic 15.0%
!! CTATGATTTAATGAATTAGT+TGG + Chr4:90031965-90031984 MsG0480023805.01.T01:three_prime_UTR 20.0%
!! TAAATTATATACAAGTTGCA+GGG + Chr4:90030341-90030360 MsG0480023805.01.T01:intron 20.0%
!! TACTAAATATTTCGATAGAT+AGG - Chr4:90031006-90031025 None:intergenic 20.0%
!! TGATTGAATTACTATGTAAA+TGG + Chr4:90030979-90030998 MsG0480023805.01.T01:intron 20.0%
!! TTACATATTTATGTCATGAA+TGG - Chr4:90030379-90030398 None:intergenic 20.0%
!!! AAAAAAGTATTTCCCATTAA+AGG - Chr4:90032082-90032101 None:intergenic 20.0%
! AGAATCATTCCATATTATGA+CGG + Chr4:90032111-90032130 MsG0480023805.01.T01:three_prime_UTR 25.0%
! CTAATGTTAGATGTTTACTT+CGG + Chr4:90031224-90031243 MsG0480023805.01.T01:intron 25.0%
! GTAAATTATATACAAGTTGC+AGG + Chr4:90030340-90030359 MsG0480023805.01.T01:intron 25.0%
! TAATGAGCAAACAAATAAAG+TGG - Chr4:90030809-90030828 None:intergenic 25.0%
! TTAGTATGTCAAAAGAAAGA+TGG - Chr4:90030195-90030214 None:intergenic 25.0%
! TTTCAAAATTCAAAGCCATT+TGG - Chr4:90030946-90030965 None:intergenic 25.0%
! TTTCATGACAGTTACAATAT+GGG + Chr4:90030669-90030688 MsG0480023805.01.T01:intron 25.0%
!! AATAGAAGCACAAATAGATT+TGG - Chr4:90030245-90030264 None:intergenic 25.0%
!! ATAGAAGCACAAATAGATTT+GGG - Chr4:90030244-90030263 None:intergenic 25.0%
!! ATTCATTTTCTTTGTGGAAT+TGG + Chr4:90029933-90029952 MsG0480023805.01.T01:intron 25.0%
!! TCTTATTTAACTAAGAAGCT+TGG + Chr4:90030916-90030935 MsG0480023805.01.T01:intron 25.0%
!! TTTTATGTTGTTCTTGCATT+TGG + Chr4:90029877-90029896 MsG0480023805.01.T01:intron 25.0%
!! TTTTCATGACAGTTACAATA+TGG + Chr4:90030668-90030687 MsG0480023805.01.T01:intron 25.0%
!!! AACAATCATCCTTTTTGAAA+TGG - Chr4:90030519-90030538 None:intergenic 25.0%
!!! AAGTTAATCAAGTTGAAACA+TGG + Chr4:90031603-90031622 MsG0480023805.01.T01:intron 25.0%
!!! GCTAAGTTATCTAGTTTTAA+GGG + Chr4:90031282-90031301 MsG0480023805.01.T01:intron 25.0%
!!! TGAAGAATTTCATTTTTCAG+TGG - Chr4:90031472-90031491 None:intergenic 25.0%
!!! TGCTAAGTTATCTAGTTTTA+AGG + Chr4:90031281-90031300 MsG0480023805.01.T01:intron 25.0%
!!! TTTGAGAAAGGTGAATTTTT+TGG + Chr4:90029757-90029776 MsG0480023805.01.T01:CDS 25.0%
AAAACTAACAAGACGAGATT+AGG - Chr4:90031644-90031663 None:intergenic 30.0%
AAACTAACAAGACGAGATTA+GGG - Chr4:90031643-90031662 None:intergenic 30.0%
AATCATTCCATATTATGACG+GGG + Chr4:90032113-90032132 MsG0480023805.01.T01:three_prime_UTR 30.0%
AGTGTCTATAGTTATGGATT+TGG + Chr4:90031096-90031115 MsG0480023805.01.T01:intron 30.0%
GAATCATTCCATATTATGAC+GGG + Chr4:90032112-90032131 MsG0480023805.01.T01:three_prime_UTR 30.0%
GCTGTAACTTATATTGAACA+AGG + Chr4:90031808-90031827 MsG0480023805.01.T01:CDS 30.0%
GTAAACATCTAACATTAGCA+TGG - Chr4:90031222-90031241 None:intergenic 30.0%
GTATGGTTATCTCCTTTAAT+GGG + Chr4:90032067-90032086 MsG0480023805.01.T01:three_prime_UTR 30.0%
GTGGTATATATATTGTAGCA+AGG + Chr4:90031388-90031407 MsG0480023805.01.T01:intron 30.0%
GTGTCTATAGTTATGGATTT+GGG + Chr4:90031097-90031116 MsG0480023805.01.T01:intron 30.0%
TATAACTTACAAGTCTGTCT+AGG + Chr4:90030466-90030485 MsG0480023805.01.T01:intron 30.0%
TGATTTGAACTGAATTGTTG+TGG + Chr4:90030268-90030287 MsG0480023805.01.T01:intron 30.0%
TGTATGGTTATCTCCTTTAA+TGG + Chr4:90032066-90032085 MsG0480023805.01.T01:three_prime_UTR 30.0%
TTACCTTGTAACTAGAAACA+TGG + Chr4:90031870-90031889 MsG0480023805.01.T01:CDS 30.0%
TTACCTTTCTTCTAATGTGA+CGG + Chr4:90031538-90031557 MsG0480023805.01.T01:intron 30.0%
TTCTTCCAAGATAAAGAGAA+AGG + Chr4:90031914-90031933 MsG0480023805.01.T01:exon 30.0%
! ATTGTGGTGGAAATATGAAT+AGG + Chr4:90029956-90029975 MsG0480023805.01.T01:intron 30.0%
! GAGGTATTAATGAACATTTC+AGG + Chr4:90031121-90031140 MsG0480023805.01.T01:intron 30.0%
! TAGAAGCACAAATAGATTTG+GGG - Chr4:90030243-90030262 None:intergenic 30.0%
! TGATATGACTGATAAGCTTT+TGG + Chr4:90030056-90030075 MsG0480023805.01.T01:CDS 30.0%
! TTTATCATCGTTTTGTAGCT+AGG + Chr4:90031336-90031355 MsG0480023805.01.T01:intron 30.0%
!! ATCAAGTTGAAACATGGTTA+TGG + Chr4:90031609-90031628 MsG0480023805.01.T01:intron 30.0%
!! CAAGAAAGTGTCTATAGTTA+TGG + Chr4:90031090-90031109 MsG0480023805.01.T01:intron 30.0%
!! TAGCTGATTCATTTTCTTTG+TGG + Chr4:90029927-90029946 MsG0480023805.01.T01:intron 30.0%
!!! GAAAGGTGAATTTTTTGGAA+TGG + Chr4:90029762-90029781 MsG0480023805.01.T01:CDS 30.0%
!!! GGATGAATTTTGACTTTGTA+TGG + Chr4:90032050-90032069 MsG0480023805.01.T01:three_prime_UTR 30.0%
AAATTCATCCACAGATGTCT+TGG - Chr4:90032040-90032059 None:intergenic 35.0%
AACAAAGTTCGGAGCAAATT+AGG - Chr4:90031720-90031739 None:intergenic 35.0%
AACGATGATAAACCATATGC+TGG - Chr4:90031328-90031347 None:intergenic 35.0%
AACTAACAAGACGAGATTAG+GGG - Chr4:90031642-90031661 None:intergenic 35.0%
AAGCACCTTTCTCTTTATCT+TGG - Chr4:90031922-90031941 None:intergenic 35.0%
AAGTCAAAGTCTAGGAACAT+TGG + Chr4:90031175-90031194 MsG0480023805.01.T01:intron 35.0%
ACATGGAAGACTTGATTACA+TGG + Chr4:90031887-90031906 MsG0480023805.01.T01:CDS 35.0%
AGAAACAGAAGTCAAAGTCT+AGG + Chr4:90031167-90031186 MsG0480023805.01.T01:intron 35.0%
AGAAGAAGCAAAAAGAAAGC+AGG - Chr4:90030563-90030582 None:intergenic 35.0%
AGTCAAAGTCTAGGAACATT+GGG + Chr4:90031176-90031195 MsG0480023805.01.T01:intron 35.0%
ATAGGTATTCGAGTATATGC+CGG + Chr4:90029974-90029993 MsG0480023805.01.T01:intron 35.0%
ATATATTGTAGCAAGGCCAA+GGG + Chr4:90031395-90031414 MsG0480023805.01.T01:intron 35.0%
ATCATTCCATATTATGACGG+GGG + Chr4:90032114-90032133 MsG0480023805.01.T01:three_prime_UTR 35.0%
ATCTAACATTAGCATGGACA+CGG - Chr4:90031216-90031235 None:intergenic 35.0%
ATTATATACAAGTTGCAGGG+TGG + Chr4:90030344-90030363 MsG0480023805.01.T01:intron 35.0%
GGGTAATGAAATTTGGATGT+AGG + Chr4:90032134-90032153 MsG0480023805.01.T01:three_prime_UTR 35.0%
TATAGTTATGGATTTGGGTG+AGG + Chr4:90031102-90031121 MsG0480023805.01.T01:intron 35.0%
TATATATTGTAGCAAGGCCA+AGG + Chr4:90031394-90031413 MsG0480023805.01.T01:intron 35.0%
TCAGTCATATCAACTCGAAA+AGG - Chr4:90030048-90030067 None:intergenic 35.0%
TTCTTTGTGGAATTGGATTG+TGG + Chr4:90029940-90029959 MsG0480023805.01.T01:intron 35.0%
! GCATGATAGTGAACAAAGTT+CGG - Chr4:90031731-90031750 None:intergenic 35.0%
! GCTTTCTTTTTGCTTCTTCT+TGG + Chr4:90030563-90030582 MsG0480023805.01.T01:intron 35.0%
! GGATACGACACTATGATTTT+TGG + Chr4:90030289-90030308 MsG0480023805.01.T01:intron 35.0%
! TTACCAACTTTTGAACCATC+CGG - Chr4:90029996-90030015 None:intergenic 35.0%
! TTAGACCTGCCATTTCAAAA+AGG + Chr4:90030507-90030526 MsG0480023805.01.T01:intron 35.0%
! TTCTAGTTACAAGGTAAGCT+GGG - Chr4:90031867-90031886 None:intergenic 35.0%
!! ATACCACTTTTCATACGACT+CGG - Chr4:90031375-90031394 None:intergenic 35.0%
!! CTTCCATGTTTCTAGTTACA+AGG - Chr4:90031876-90031895 None:intergenic 35.0%
!! TTCTGTTTCTAGACTGTTCA+TGG - Chr4:90031157-90031176 None:intergenic 35.0%
!! TTTCTAGTTACAAGGTAAGC+TGG - Chr4:90031868-90031887 None:intergenic 35.0%
!! TTTTTAGCCCAAAACTTAGC+TGG - Chr4:90031564-90031583 None:intergenic 35.0%
!!! ATCATCCTTTTTGAAATGGC+AGG - Chr4:90030515-90030534 None:intergenic 35.0%
!!! CGGTTGTTTTAATACAGTTG+AGG + Chr4:90031244-90031263 MsG0480023805.01.T01:intron 35.0%
!!! GCTAAGTTTTGGGCTAAAAA+TGG + Chr4:90031564-90031583 MsG0480023805.01.T01:intron 35.0%
!!! TTTTGGAATGGAAGAGAGAA+GGG + Chr4:90029774-90029793 MsG0480023805.01.T01:CDS 35.0%
!!! TTTTTGGAATGGAAGAGAGA+AGG + Chr4:90029773-90029792 MsG0480023805.01.T01:CDS 35.0%
AAGAAGCTTGGACTTCCAAA+TGG + Chr4:90030928-90030947 MsG0480023805.01.T01:intron 40.0%
AATAGTGAAACTGACTGCGA+TGG + Chr4:90030404-90030423 MsG0480023805.01.T01:intron 40.0%
AGACTGTTCATGGACTTTGA+AGG - Chr4:90031147-90031166 None:intergenic 40.0%
ATCAACTCGAAAAGGATCCT+TGG - Chr4:90030040-90030059 None:intergenic 40.0%
CAAACATAAAATGGCACCCT+TGG - Chr4:90031414-90031433 None:intergenic 40.0%
CAAATAGATTTGGGGAGTCA+TGG - Chr4:90030235-90030254 None:intergenic 40.0%
CAACTTTACCAACATGTGGT+TGG + Chr4:90030865-90030884 MsG0480023805.01.T01:intron 40.0%
GACGATGTAATGCAAAGTTG+TGG - Chr4:90031698-90031717 None:intergenic 40.0%
GCTGGGTCTGTAATTGTATT+TGG - Chr4:90031850-90031869 None:intergenic 40.0%
GCTTCAACTTTACCAACATG+TGG + Chr4:90030861-90030880 MsG0480023805.01.T01:intron 40.0%
GCTTCAGTACAATGACAAGT+TGG + Chr4:90031938-90031957 MsG0480023805.01.T01:three_prime_UTR 40.0%
GGTAAACACTGTGAAACAGA+TGG + Chr4:90030011-90030030 MsG0480023805.01.T01:CDS 40.0%
GTATTCAAACAAGTGAAGCC+TGG + Chr4:90031023-90031042 MsG0480023805.01.T01:intron 40.0%
TCAACTCGAAAAGGATCCTT+GGG - Chr4:90030039-90030058 None:intergenic 40.0%
TCATTACCCCCGTCATAATA+TGG - Chr4:90032123-90032142 None:intergenic 40.0%
TGAATGAACCAAGACATCTG+TGG + Chr4:90032029-90032048 MsG0480023805.01.T01:three_prime_UTR 40.0%
TGGAAGACTTGATTACATGG+TGG + Chr4:90031890-90031909 MsG0480023805.01.T01:CDS 40.0%
TTTGTGGAATTGGATTGTGG+TGG + Chr4:90029943-90029962 MsG0480023805.01.T01:intron 40.0%
! AGCTAAAGCATCATGAGCAA+AGG + Chr4:90029732-90029751 MsG0480023805.01.T01:CDS 40.0%
! ATGACGGGGGTAATGAAATT+TGG + Chr4:90032127-90032146 MsG0480023805.01.T01:three_prime_UTR 40.0%
! GAAGCCTGGCTAGTTAAATA+AGG + Chr4:90031037-90031056 MsG0480023805.01.T01:intron 40.0%
! GGGCAAATTTTGTCACATGA+AGG + Chr4:90031302-90031321 MsG0480023805.01.T01:intron 40.0%
! TTTGGAATGGAAGAGAGAAG+GGG + Chr4:90029775-90029794 MsG0480023805.01.T01:CDS 40.0%
!! CTTGCCTTATTTAACTAGCC+AGG - Chr4:90031044-90031063 None:intergenic 40.0%
!! TGAGCAAAGGCTTTTGAGAA+AGG + Chr4:90029745-90029764 MsG0480023805.01.T01:CDS 40.0%
AACTGACTGCGATGGTTCTT+CGG + Chr4:90030412-90030431 MsG0480023805.01.T01:intron 45.0%
ACATAGTGTGATGCTTTGCC+TGG - Chr4:90030706-90030725 None:intergenic 45.0%
ATATGGGTGTGATTCCAACC+AGG + Chr4:90030685-90030704 MsG0480023805.01.T01:CDS 45.0%
ATGCCGGATGGTTCAAAAGT+TGG + Chr4:90029990-90030009 MsG0480023805.01.T01:CDS 45.0%
CTTCCGAGTCGTATGAAAAG+TGG + Chr4:90031369-90031388 MsG0480023805.01.T01:intron 45.0%
GAACAAGGACATGTTCGAGT+TGG + Chr4:90031823-90031842 MsG0480023805.01.T01:CDS 45.0%
GTATTCGAGTATATGCCGGA+TGG + Chr4:90029978-90029997 MsG0480023805.01.T01:CDS 45.0%
GTTCACTATCATGCAGACGT+AGG + Chr4:90031737-90031756 MsG0480023805.01.T01:intron 45.0%
TGGCCGTCACATTAGAAGAA+AGG - Chr4:90031544-90031563 None:intergenic 45.0%
TGTCTGAGTGCTAAGAAGCT+TGG + Chr4:90030890-90030909 MsG0480023805.01.T01:intron 45.0%
TGTGAAACAGATGGATCCCA+AGG + Chr4:90030020-90030039 MsG0480023805.01.T01:CDS 45.0%
TTGGAATGGAAGAGAGAAGG+GGG + Chr4:90029776-90029795 MsG0480023805.01.T01:CDS 45.0%
! ACGTAGGCTCTCAACTGTTT+TGG + Chr4:90031753-90031772 MsG0480023805.01.T01:CDS 45.0%
! ACTTTTGTAATCGTCCCGTC+CGG - Chr4:90029840-90029859 None:intergenic 45.0%
! GTGTTCCTTTTACCTGCAGA+AGG - Chr4:90030748-90030767 None:intergenic 45.0%
AGTGTGATGCTTTGCCTGGT+TGG - Chr4:90030702-90030721 None:intergenic 50.0%
ATGCAGCGCTACCATGTTAC+CGG + Chr4:90029818-90029837 MsG0480023805.01.T01:CDS 50.0%
CAGACAGACCAACCACATGT+TGG - Chr4:90030876-90030895 None:intergenic 50.0%
GTCACATGAAGGCCAGCATA+TGG + Chr4:90031313-90031332 MsG0480023805.01.T01:intron 50.0%
GTCAGCCTTCTGCAGGTAAA+AGG + Chr4:90030740-90030759 MsG0480023805.01.T01:intron 50.0%
TTACCTGCAGAAGGCTGACA+CGG - Chr4:90030739-90030758 None:intergenic 50.0%
! GTGACGGCCAGCTAAGTTTT+GGG + Chr4:90031554-90031573 MsG0480023805.01.T01:intron 50.0%
! TGTGACGGCCAGCTAAGTTT+TGG + Chr4:90031553-90031572 MsG0480023805.01.T01:intron 50.0%
AATCGTCCCGTCCGGTAACA+TGG - Chr4:90029832-90029851 None:intergenic 55.0%
AGCGCTACCATGTTACCGGA+CGG + Chr4:90029822-90029841 MsG0480023805.01.T01:CDS 55.0%
AGGGGGTCACAGAGAGAACA+TGG + Chr4:90029793-90029812 MsG0480023805.01.T01:CDS 55.0%
TAACCGTGTCAGCCTTCTGC+AGG + Chr4:90030733-90030752 MsG0480023805.01.T01:CDS 55.0%
GCGCTACCATGTTACCGGAC+GGG + Chr4:90029823-90029842 MsG0480023805.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 90029725 90032174 90029725 ID=MsG0480023805.01;Name=MsG0480023805.01
Chr4 mRNA 90029725 90032174 90029725 ID=MsG0480023805.01.T01;Parent=MsG0480023805.01;Name=MsG0480023805.01.T01;_AED=0.50;_eAED=0.51;_QI=0|0.66|0.75|1|0.66|0.75|4|247|171
Chr4 exon 90029725 90029882 90029725 ID=MsG0480023805.01.T01:exon:6659;Parent=MsG0480023805.01.T01
Chr4 exon 90029978 90030085 90029978 ID=MsG0480023805.01.T01:exon:6660;Parent=MsG0480023805.01.T01
Chr4 exon 90030680 90030754 90030680 ID=MsG0480023805.01.T01:exon:6661;Parent=MsG0480023805.01.T01
Chr4 exon 90031753 90032174 90031753 ID=MsG0480023805.01.T01:exon:6662;Parent=MsG0480023805.01.T01
Chr4 CDS 90029725 90029882 90029725 ID=MsG0480023805.01.T01:cds;Parent=MsG0480023805.01.T01
Chr4 CDS 90029978 90030085 90029978 ID=MsG0480023805.01.T01:cds;Parent=MsG0480023805.01.T01
Chr4 CDS 90030680 90030754 90030680 ID=MsG0480023805.01.T01:cds;Parent=MsG0480023805.01.T01
Chr4 CDS 90031753 90031927 90031753 ID=MsG0480023805.01.T01:cds;Parent=MsG0480023805.01.T01
Chr4 three_prime_UTR 90031928 90032174 90031928 ID=MsG0480023805.01.T01:three_prime_utr;Parent=MsG0480023805.01.T01
Gene Sequence

>MsG0480023805.01.T01

ATGAGGAAGCTAAAGCATCATGAGCAAAGGCTTTTGAGAAAGGTGAATTTTTTGGAATGGAAGAGAGAAGGGGGTCACAGAGAGAACATGGTTATGCAGCGCTACCATGTTACCGGACGGGACGATTACAAAAGTATTTTCATAATTCACATTTTTATGTATTCGAGTATATGCCGGATGGTTCAAAAGTTGGTAAACACTGTGAAACAGATGGATCCCAAGGATCCTTTTCGAGTTGATATGACTGATAAGCTTTTGGAAAAACTTTACAATATGGGTGTGATTCCAACCAGGCAAAGCATCACACTATGTGAACGCTTAACCGTGTCAGCCTTCTGCAGACGTAGGCTCTCAACTGTTTTGGTGAAACTAAAATTTGCTGAGCATCTGAAAGAAGCTGTAACTTATATTGAACAAGGACATGTTCGAGTTGGTCCAAATACAATTACAGACCCAGCTTACCTTGTAACTAGAAACATGGAAGACTTGATTACATGGTGGATTCTTCCAAGATAA
Protein sequence

>MsG0480023805.01.T01

MRKLKHHEQRLLRKVNFLEWKREGGHRENMVMQRYHVTGRDDYKSIFIIHIFMYSSICRMVQKLVNTVKQMDPKDPFRVDMTDKLLEKLYNMGVIPTRQSITLCERLTVSAFCRRRLSTVLVKLKFAEHLKEAVTYIEQGHVRVGPNTITDPAYLVTRNMEDLITWWILPR*