AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023887.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023887.01.T01 MTR_8g104260 90.842 404 28 2 1 404 1 395 0.0 640
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023887.01.T01 AT1G73840 43.571 420 189 18 1 404 1 388 9.58e-62 204
MsG0480023887.01.T01 AT1G73840 43.143 350 161 15 70 404 1 327 7.23e-44 155

Find 140 sgRNAs with CRISPR-Local

Find 372 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGCACTGAAGGCTGATTT+TGG 0.217216 4:+90897035 None:intergenic
CCACCGATTGGTGCCAATTT+AGG 0.222463 4:-90896689 MsG0480023887.01.T01:CDS
GGAGCTATTGGTTGAACTTT+TGG 0.239042 4:+90897187 None:intergenic
ATCTCCCACTCCTTTCAATT+TGG 0.243860 4:-90894764 MsG0480023887.01.T01:three_prime_UTR
CCACCTTGCACAGGCAATAT+TGG 0.272411 4:+90897109 None:intergenic
AGCATGTTGAAAACCTAAAT+TGG 0.303611 4:+90896676 None:intergenic
GGTTTGCACTGAAGGTGGTC+TGG 0.310505 4:+90896730 None:intergenic
TGGGGAGTCAGATGCCCTTT+AGG 0.329475 4:+90896935 None:intergenic
CAGGTTGGAAATATACCATT+TGG 0.354659 4:-90895177 MsG0480023887.01.T01:CDS
CCTGATTAGACAAAACAAAA+TGG 0.355113 4:+90897330 None:intergenic
ATCATCTCAGTCATCTTATC+AGG 0.369211 4:-90896466 MsG0480023887.01.T01:intron
AAGTTGATTCTTCGACATTC+CGG 0.379339 4:+90899296 None:intergenic
GAGAATCTAGCACAGCATTC+TGG 0.381170 4:-90895081 MsG0480023887.01.T01:CDS
GGTCTTTGTGTCGGCTGTAC+TGG 0.384854 4:+90897148 None:intergenic
AAATTGATAGAGGGTCTTCT+TGG 0.393175 4:-90895119 MsG0480023887.01.T01:CDS
AGCACTTGATTTCTTTGTTC+CGG 0.406131 4:+90894836 None:intergenic
TCCTCAGGGACCATCATCTA+TGG 0.406393 4:-90895058 MsG0480023887.01.T01:CDS
GTTTGCACTGAAGGTGGTCT+GGG 0.415268 4:+90896731 None:intergenic
TTCTTGGATGCCTGGTCCCT+CGG 0.417764 4:-90895103 MsG0480023887.01.T01:CDS
AGCACAGCATTCTGGTCCTC+AGG 0.420622 4:-90895073 MsG0480023887.01.T01:CDS
AATGCCAACTGCCTCGAGTC+AGG 0.424620 4:-90896819 MsG0480023887.01.T01:CDS
AGAGGGTCTTCTTGGATGCC+TGG 0.426008 4:-90895111 MsG0480023887.01.T01:CDS
GGAACAGCAGCATATGAAAC+TGG 0.426563 4:+90897016 None:intergenic
GGTCTGGGCTGCGGTGGCAA+TGG 0.431160 4:+90896746 None:intergenic
AGCAATGCCTTCTCCATGTC+TGG 0.434431 4:+90894905 None:intergenic
ATATAAATCTTCAATGAGAT+TGG 0.437556 4:+90894545 None:intergenic
TGAGATTGATGACTCGTTGT+AGG 0.439418 4:+90896995 None:intergenic
TAGCGAACCTGTGCTTACTT+TGG 0.439489 4:-90898443 MsG0480023887.01.T01:CDS
TATTTGGCTTACATGAAAGA+TGG 0.445107 4:+90896625 None:intergenic
AAATGCCACAACAGCCTAAA+GGG 0.450959 4:-90896949 MsG0480023887.01.T01:CDS
GGATGGAAGGTTTGCACTGA+AGG 0.452928 4:+90896722 None:intergenic
AACAGATGCTGGAGCTACTT+GGG 0.459345 4:+90896916 None:intergenic
AGGTTGGAAATATACCATTT+GGG 0.465872 4:-90895176 MsG0480023887.01.T01:CDS
GAACAGATGCTGGAGCTACT+TGG 0.467900 4:+90896915 None:intergenic
GAGGCAGTTGGCATTTGAGT+TGG 0.469452 4:+90896827 None:intergenic
CGAGGGTTTATCAGCGAACC+TGG 0.474127 4:-90899319 MsG0480023887.01.T01:CDS
CATCAACCATTGCAGACTCC+TGG 0.476133 4:-90896794 MsG0480023887.01.T01:CDS
CTGGGCTGCGGTGGCAATGG+TGG 0.483339 4:+90896749 None:intergenic
AACGAGGTCTTCGCAATGGC+CGG 0.494684 4:-90899357 MsG0480023887.01.T01:exon
ACTGAAGGTGGTCTGGGCTG+CGG 0.496060 4:+90896737 None:intergenic
GTAGTAGTGCCTGCCCTGGT+GGG 0.503872 4:+90896499 None:intergenic
CAAATGCCACAACAGCCTAA+AGG 0.507130 4:-90896950 MsG0480023887.01.T01:CDS
AAATATATATAATCAAGGAC+GGG 0.511212 4:+90894506 None:intergenic
AATGCAATGCAAATTGATAG+AGG 0.513025 4:-90895129 MsG0480023887.01.T01:CDS
TGGCAAAATATATATAATCA+AGG 0.514460 4:+90894501 None:intergenic
GACTGAGATGATTGTTGACT+TGG 0.515162 4:+90896477 None:intergenic
TCTGATTTCAGCAGTCAAGC+TGG 0.516591 4:-90895153 MsG0480023887.01.T01:CDS
GCTAGATTCTCCGAGGGACC+AGG 0.516688 4:+90895093 None:intergenic
ACAGAGGGTGGAGGTATATG+TGG 0.520018 4:+90896875 None:intergenic
CGATATAATGTCTCAGATGA+AGG 0.521213 4:-90899271 MsG0480023887.01.T01:intron
ATTTGGCTTACATGAAAGAT+GGG 0.523822 4:+90896626 None:intergenic
GATGATTGTGGAACAGATGC+TGG 0.524572 4:+90896905 None:intergenic
ATTGGAGCAGGCTGAACACT+TGG 0.524643 4:+90897127 None:intergenic
AGATGCCCTTTAGGCTGTTG+TGG 0.524650 4:+90896944 None:intergenic
GGCATTTGAGTTGGATGAAG+TGG 0.526366 4:+90896836 None:intergenic
CCTAAATTGGCACCAATCGG+TGG 0.528144 4:+90896689 None:intergenic
AAACCTAAATTGGCACCAAT+CGG 0.529814 4:+90896686 None:intergenic
CTTGGTAGTAGTGCCTGCCC+TGG 0.530835 4:+90896495 None:intergenic
TGCACAGGCAATATTGGAGC+AGG 0.531217 4:+90897115 None:intergenic
GGTAGTAGTGCCTGCCCTGG+TGG 0.531403 4:+90896498 None:intergenic
GTTGGATCTACGTTCCCACC+AGG 0.534207 4:-90896513 MsG0480023887.01.T01:CDS
AATCAGGCGCAAATCATGCT+TGG 0.534517 4:-90897314 MsG0480023887.01.T01:CDS
GTTTACGACGGCAAAGGCTG+CGG 0.534823 4:-90899384 MsG0480023887.01.T01:five_prime_UTR
GGTAGGAGATTTATCTGCTC+CGG 0.535490 4:+90894860 None:intergenic
TAACCCTTGACCTTTGTATG+AGG 0.542651 4:+90894571 None:intergenic
CTCAAACTCAAATTCCTCCC+AGG 0.544437 4:-90897063 MsG0480023887.01.T01:CDS
GGTTTATCAGCGAACCTGGC+CGG 0.544748 4:-90899315 MsG0480023887.01.T01:CDS
ATCTACGTTCCCACCAGGGC+AGG 0.545822 4:-90896508 MsG0480023887.01.T01:CDS
GATTTCTTTGTTCCGGAGGT+AGG 0.546980 4:+90894843 None:intergenic
GCATATGAAACTGGCACTGA+AGG 0.547468 4:+90897025 None:intergenic
TCTTGTATGCCACCTTGCAC+AGG 0.548368 4:+90897100 None:intergenic
GGAGAAGGCATTGCTTCAGC+AGG 0.548457 4:-90894897 MsG0480023887.01.T01:CDS
TTGCAACGAATGTGCAGCTG+TGG 0.549837 4:+90896970 None:intergenic
GTTGACTGCAATTAAATCAC+TGG 0.550381 4:-90894638 MsG0480023887.01.T01:three_prime_UTR
TCTATTATTGATGCTCAAAG+TGG 0.552685 4:-90894731 MsG0480023887.01.T01:three_prime_UTR
TACACCAAATTGAAAGGAGT+GGG 0.555717 4:+90894760 None:intergenic
AGAATCTACACCAAATTGAA+AGG 0.558415 4:+90894754 None:intergenic
AAAATATATATAATCAAGGA+CGG 0.559230 4:+90894505 None:intergenic
GAAGGTGGTCTGGGCTGCGG+TGG 0.560378 4:+90896740 None:intergenic
GCAGATAAATCTCCTACCTC+CGG 0.560675 4:-90894855 MsG0480023887.01.T01:CDS
CATGAAAGATGGGCGGAGGA+AGG 0.566167 4:+90896636 None:intergenic
ATAATTACCGCAGGAGGCCG+AGG 0.566844 4:+90895003 None:intergenic
GCTCCAATATTGCCTGTGCA+AGG 0.568072 4:-90897112 MsG0480023887.01.T01:CDS
CTAAATTGGCACCAATCGGT+GGG 0.568515 4:+90896690 None:intergenic
ACTTCCTCATACAAAGGTCA+AGG 0.572934 4:-90894575 MsG0480023887.01.T01:three_prime_UTR
CATGCAGTTGACACCAGACA+TGG 0.573544 4:-90894918 MsG0480023887.01.T01:intron
GATGAATGAACAGAGGGTGG+AGG 0.579071 4:+90896866 None:intergenic
GGTGCAAAACCTCCTAGTGT+TGG 0.579641 4:-90896531 MsG0480023887.01.T01:CDS
TGAGCAGAAACCATAGATGA+TGG 0.580733 4:+90895048 None:intergenic
TGCGCCTGACTCGAGGCAGT+TGG 0.581868 4:+90896815 None:intergenic
GATTCTTCGACATTCCGGCC+AGG 0.582129 4:+90899301 None:intergenic
GTGCTGCTAATCAGCCTCCT+CGG 0.587990 4:-90895020 MsG0480023887.01.T01:CDS
GGCGCAAATCATGCTTGGAA+TGG 0.588794 4:-90897309 MsG0480023887.01.T01:CDS
TCTATGGTTTCTGCTCAGAT+CGG 0.590710 4:-90895042 MsG0480023887.01.T01:CDS
TGGAAGGTTTGCACTGAAGG+TGG 0.591348 4:+90896725 None:intergenic
ATATGATCCAAAGTAAGCAC+AGG 0.591627 4:+90898436 None:intergenic
TGTGGAAGTTGTGATGATTG+TGG 0.596173 4:+90896893 None:intergenic
AATCAGGTTTACGACGGCAA+AGG 0.598557 4:-90899390 MsG0480023887.01.T01:five_prime_UTR
GGAAAACAAGTAAGCGGCGA+GGG 0.599552 4:-90899336 MsG0480023887.01.T01:CDS
TGAACACTTGGTCTTTGTGT+CGG 0.602044 4:+90897139 None:intergenic
TCAGCCTCCTCGGCCTCCTG+CGG 0.602819 4:-90895010 MsG0480023887.01.T01:intron
CTGCTGAAATCAGACCCAAA+TGG 0.603135 4:+90895162 None:intergenic
GCACAGCATTCTGGTCCTCA+GGG 0.603604 4:-90895072 MsG0480023887.01.T01:CDS
AGAGGCATATGTGAAAATCC+AGG 0.603771 4:+90896776 None:intergenic
AAATTGGCACCAATCGGTGG+GGG 0.604689 4:+90896692 None:intergenic
TAAATTGGCACCAATCGGTG+GGG 0.616828 4:+90896691 None:intergenic
ATGCAATGCAAATTGATAGA+GGG 0.619745 4:-90895128 MsG0480023887.01.T01:CDS
TGGTTGATGCGCCTGACTCG+AGG 0.620870 4:+90896808 None:intergenic
CTTACATGAAAGATGGGCGG+AGG 0.620985 4:+90896632 None:intergenic
CTACACCAAATTGAAAGGAG+TGG 0.621012 4:+90894759 None:intergenic
GAAGCGGGAGGGACTGTGAG+AGG 0.625226 4:-90899425 None:intergenic
ACAGATGCTGGAGCTACTTG+GGG 0.629033 4:+90896917 None:intergenic
TTCACAATAATTACCGCAGG+AGG 0.629072 4:+90894997 None:intergenic
ACTTGATTTCTTTGTTCCGG+AGG 0.637553 4:+90894839 None:intergenic
GGTGGCAATGGTGGTTGCAG+AGG 0.638987 4:+90896758 None:intergenic
CGACAACGAGGTCTTCGCAA+TGG 0.639266 4:-90899361 MsG0480023887.01.T01:exon
GGTGGCATACAAGATCAAGC+AGG 0.642519 4:-90897091 MsG0480023887.01.T01:CDS
CTTCCTCATACAAAGGTCAA+GGG 0.646668 4:-90894574 MsG0480023887.01.T01:three_prime_UTR
AACGTAGATCCAACACTAGG+AGG 0.646821 4:+90896522 None:intergenic
TGCAACGAATGTGCAGCTGT+GGG 0.650445 4:+90896971 None:intergenic
AATATATATAATCAAGGACG+GGG 0.651061 4:+90894507 None:intergenic
TGCTGTGCTAGATTCTCCGA+GGG 0.654352 4:+90895087 None:intergenic
ATTACCGCAGGAGGCCGAGG+AGG 0.656048 4:+90895006 None:intergenic
TGGCTTACATGAAAGATGGG+CGG 0.666783 4:+90896629 None:intergenic
GAAGATGAATGAACAGAGGG+TGG 0.672837 4:+90896863 None:intergenic
GGGAACGTAGATCCAACACT+AGG 0.673989 4:+90896519 None:intergenic
TTGGATCTACGTTCCCACCA+GGG 0.674955 4:-90896512 MsG0480023887.01.T01:CDS
ATCGGCAATCAGGTTTACGA+CGG 0.675352 4:-90899396 MsG0480023887.01.T01:five_prime_UTR
ATGGCCGGAAAACAAGTAAG+CGG 0.675868 4:-90899342 MsG0480023887.01.T01:CDS
TGTGAAGATGAATGAACAGA+GGG 0.681536 4:+90896860 None:intergenic
AATGGTGCAGTCGCAACAAG+CGG 0.683239 4:-90897291 MsG0480023887.01.T01:intron
CGGAAAACAAGTAAGCGGCG+AGG 0.688386 4:-90899337 MsG0480023887.01.T01:CDS
GTTGACACCAGACATGGAGA+AGG 0.688888 4:-90894912 MsG0480023887.01.T01:CDS
ATGCTGTGCTAGATTCTCCG+AGG 0.691552 4:+90895086 None:intergenic
CCAATATTGCCTGTGCAAGG+TGG 0.694856 4:-90897109 MsG0480023887.01.T01:CDS
CAAAGGCTGCGGCGACAACG+AGG 0.695329 4:-90899373 MsG0480023887.01.T01:five_prime_UTR
GAAAATCCAGGAGTCTGCAA+TGG 0.697860 4:+90896788 None:intergenic
GCAGGTCATGAGTCTCACAC+CGG 0.699959 4:-90894879 MsG0480023887.01.T01:CDS
ACCATAGATGATGGTCCCTG+AGG 0.710726 4:+90895057 None:intergenic
CTGTGAAGATGAATGAACAG+AGG 0.739097 4:+90896859 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTTAATATTTCACAA+TGG - Chr4:90895205-90895224 MsG0480023887.01.T01:intron 10.0%
!! AAAATATATATAATCAAGGA+CGG + Chr4:90899410-90899429 None:intergenic 15.0%
!! AAATTGTAAACTGAAATATT+TGG + Chr4:90897306-90897325 None:intergenic 15.0%
!! AAGAAAAATTTAGATTAGAT+GGG - Chr4:90899311-90899330 MsG0480023887.01.T01:CDS 15.0%
!! TATACAAACAAAATTATCTT+TGG - Chr4:90897708-90897727 MsG0480023887.01.T01:intron 15.0%
!!! AAATATTAAATTTTTCAAGC+AGG + Chr4:90895200-90895219 None:intergenic 15.0%
!!! AAATATTTTTGTTTTTGCAA+AGG + Chr4:90895897-90895916 None:intergenic 15.0%
!!! AATATTAAATTTTTCAAGCA+GGG + Chr4:90895199-90895218 None:intergenic 15.0%
!!! TATTTATTGATGAAATTTTC+AGG - Chr4:90897356-90897375 MsG0480023887.01.T01:CDS 15.0%
!!! TTAATTTCTAGATACAAAAT+CGG + Chr4:90894965-90894984 None:intergenic 15.0%
!!! TTCAATATATATTTTTGACA+TGG + Chr4:90897930-90897949 None:intergenic 15.0%
!! AAATATATATAATCAAGGAC+GGG + Chr4:90899409-90899428 None:intergenic 20.0%
!! ACAAGTAAATCTAAGTAAAA+TGG - Chr4:90898638-90898657 MsG0480023887.01.T01:intron 20.0%
!! AGAAAAATTTAGATTAGATG+GGG - Chr4:90899312-90899331 MsG0480023887.01.T01:CDS 20.0%
!! ATATAAATCTTCAATGAGAT+TGG + Chr4:90899370-90899389 None:intergenic 20.0%
!! ATTTAATATTTCACAATGGA+TGG - Chr4:90895209-90895228 MsG0480023887.01.T01:intron 20.0%
!! GAAGAAAAATTTAGATTAGA+TGG - Chr4:90899310-90899329 MsG0480023887.01.T01:CDS 20.0%
!! TGGCAAAATATATATAATCA+AGG + Chr4:90899414-90899433 None:intergenic 20.0%
!! TTAATGATAAAAAATCGATC+TGG + Chr4:90895426-90895445 None:intergenic 20.0%
!! TTATGTCAATATGAAGATTA+CGG - Chr4:90898345-90898364 MsG0480023887.01.T01:intron 20.0%
!!! AAAATTATCTTTGGTTTACA+TGG - Chr4:90897717-90897736 MsG0480023887.01.T01:intron 20.0%
!!! AAGTTAGATTTTACTTTAGA+CGG - Chr4:90896008-90896027 MsG0480023887.01.T01:intron 20.0%
!!! TAATGTTTCTATCTATTTCA+CGG - Chr4:90895956-90895975 MsG0480023887.01.T01:intron 20.0%
! AAAAATTTAGATTAGATGGG+GGG - Chr4:90899314-90899333 MsG0480023887.01.T01:CDS 25.0%
! AAAGTAAAATCTAACTTCAG+AGG + Chr4:90896005-90896024 None:intergenic 25.0%
! AAGTAAAATCTAACTTCAGA+GGG + Chr4:90896004-90896023 None:intergenic 25.0%
! AATATATATAATCAAGGACG+GGG + Chr4:90899408-90899427 None:intergenic 25.0%
! AGATTTAGAGATTAATGAGT+TGG - Chr4:90895082-90895101 MsG0480023887.01.T01:CDS 25.0%
! ATATTGATGGAAGTTTGATT+GGG - Chr4:90895682-90895701 MsG0480023887.01.T01:intron 25.0%
! ATTTCTGTCAAACAAAAAGA+AGG - Chr4:90898259-90898278 MsG0480023887.01.T01:intron 25.0%
! CAACTCAAGATAAAAAACTA+TGG + Chr4:90897778-90897797 None:intergenic 25.0%
! CTAGAAATACATAAGAGAAA+CGG - Chr4:90895052-90895071 MsG0480023887.01.T01:CDS 25.0%
! GAAAAATTTAGATTAGATGG+GGG - Chr4:90899313-90899332 MsG0480023887.01.T01:CDS 25.0%
! GTAGTCTATGTATAACATTT+AGG - Chr4:90895605-90895624 MsG0480023887.01.T01:intron 25.0%
! GTGAAATAGATAGAAACATT+AGG + Chr4:90895957-90895976 None:intergenic 25.0%
! GTGGCATCAAAATATATTAT+TGG - Chr4:90897538-90897557 MsG0480023887.01.T01:intron 25.0%
! TAAAATCACCAAAATCAACT+TGG + Chr4:90898548-90898567 None:intergenic 25.0%
! TAGATTTGCATGCTAATAAA+TGG - Chr4:90896689-90896708 MsG0480023887.01.T01:CDS 25.0%
! TATATTGATGGAAGTTTGAT+TGG - Chr4:90895681-90895700 MsG0480023887.01.T01:intron 25.0%
! TATGTCAATATGAAGATTAC+GGG - Chr4:90898346-90898365 MsG0480023887.01.T01:intron 25.0%
! TGGTTTATGATAGAACATTA+TGG - Chr4:90895114-90895133 MsG0480023887.01.T01:CDS 25.0%
! TTTAGACTTGAAAACTATGT+TGG - Chr4:90897491-90897510 MsG0480023887.01.T01:intron 25.0%
!! CTGTTTGTAGTCTTTAATTT+GGG + Chr4:90898008-90898027 None:intergenic 25.0%
!! TAATGAGTTGGATCTAAATA+TGG - Chr4:90895094-90895113 MsG0480023887.01.T01:CDS 25.0%
!! TCTGTTTTGTATCTATATGT+CGG - Chr4:90894919-90894938 MsG0480023887.01.T01:intron 25.0%
!! TGTAGATTGTGTTATGTTTT+GGG - Chr4:90895715-90895734 MsG0480023887.01.T01:intron 25.0%
!! TTGTAGATTGTGTTATGTTT+TGG - Chr4:90895714-90895733 MsG0480023887.01.T01:intron 25.0%
!!! ATGTATAACATTTAGGTTGA+GGG - Chr4:90895612-90895631 MsG0480023887.01.T01:intron 25.0%
!!! CTACACATGAAGATTTTTTT+AGG - Chr4:90895920-90895939 MsG0480023887.01.T01:intron 25.0%
!!! TATGTATAACATTTAGGTTG+AGG - Chr4:90895611-90895630 MsG0480023887.01.T01:intron 25.0%
!!! TGTTTGTAGTCTTTAATTTG+GGG + Chr4:90898007-90898026 None:intergenic 25.0%
!!! TTATAGCTTTGGAGTTTTAA+GGG - Chr4:90895284-90895303 MsG0480023887.01.T01:intron 25.0%
!!! TTTTTTATCATTAATGAGCG+AGG - Chr4:90895432-90895451 MsG0480023887.01.T01:intron 25.0%
AAACAGTCTAAAAAAGTGAG+CGG + Chr4:90896457-90896476 None:intergenic 30.0%
AAAGTGTGCAATTCAATTTG+GGG + Chr4:90896149-90896168 None:intergenic 30.0%
AAAGTGTGCAATTCACTTTA+GGG + Chr4:90896315-90896334 None:intergenic 30.0%
AATGACAGCAAAATAAAGAG+AGG + Chr4:90896653-90896672 None:intergenic 30.0%
AATGCAATGCAAATTGATAG+AGG - Chr4:90898783-90898802 MsG0480023887.01.T01:intron 30.0%
AGAATCTACACCAAATTGAA+AGG + Chr4:90899161-90899180 None:intergenic 30.0%
AGCATGTTGAAAACCTAAAT+TGG + Chr4:90897239-90897258 None:intergenic 30.0%
AGGTTGGAAATATACCATTT+GGG - Chr4:90898736-90898755 MsG0480023887.01.T01:intron 30.0%
AGTAGCAGTGGAAAAAAAAA+TGG - Chr4:90898090-90898109 MsG0480023887.01.T01:intron 30.0%
ATAGTTTCTGTTGTAGGATT+AGG - Chr4:90895384-90895403 MsG0480023887.01.T01:intron 30.0%
ATGCAATGCAAATTGATAGA+GGG - Chr4:90898784-90898803 MsG0480023887.01.T01:intron 30.0%
CAAAAAGAAGGTAAATCACA+AGG - Chr4:90898271-90898290 MsG0480023887.01.T01:intron 30.0%
CAAAGTGTGCAATTCAATTT+GGG + Chr4:90896150-90896169 None:intergenic 30.0%
CCTGATTAGACAAAACAAAA+TGG + Chr4:90896585-90896604 None:intergenic 30.0%
CGTTTCTCTTATGTATTTCT+AGG + Chr4:90895054-90895073 None:intergenic 30.0%
CTGAATAGAGAAAAACGAAA+GGG + Chr4:90894726-90894745 None:intergenic 30.0%
GATAGAAACATTAGGAAATG+AGG + Chr4:90895949-90895968 None:intergenic 30.0%
GCATACACATGTATAAAGAA+TGG + Chr4:90896078-90896097 None:intergenic 30.0%
GCTGTTTGTAGTCTTTAATT+TGG + Chr4:90898009-90898028 None:intergenic 30.0%
GTAACGAGGTAATATATTGA+TGG - Chr4:90895669-90895688 MsG0480023887.01.T01:intron 30.0%
GTTGTATCGTTGTTATAGTT+TGG - Chr4:90894877-90894896 MsG0480023887.01.T01:CDS 30.0%
TAATTCACAATAATTACCGC+AGG + Chr4:90898921-90898940 None:intergenic 30.0%
TCTATTATTGATGCTCAAAG+TGG - Chr4:90899181-90899200 MsG0480023887.01.T01:intron 30.0%
TCTGAATAGAGAAAAACGAA+AGG + Chr4:90894727-90894746 None:intergenic 30.0%
TGTTTAATTAACTAGCATGC+TGG - Chr4:90898508-90898527 MsG0480023887.01.T01:intron 30.0%
TTATTCCGAAAATGCTATAG+TGG - Chr4:90897812-90897831 MsG0480023887.01.T01:intron 30.0%
! AAGGGATTTTTGTGATTCTT+CGG - Chr4:90895302-90895321 MsG0480023887.01.T01:intron 30.0%
! ACAGCATACAGATTTGAAAT+CGG + Chr4:90896210-90896229 None:intergenic 30.0%
! ATAGTGGAATGACAGATAAT+TGG - Chr4:90897828-90897847 MsG0480023887.01.T01:intron 30.0%
! ATTTGGCTTACATGAAAGAT+GGG + Chr4:90897289-90897308 None:intergenic 30.0%
! TATTGTACTGATGATTCTGA+AGG - Chr4:90898383-90898402 MsG0480023887.01.T01:intron 30.0%
! TATTTGGCTTACATGAAAGA+TGG + Chr4:90897290-90897309 None:intergenic 30.0%
! TCATTCCACTATAGCATTTT+CGG + Chr4:90897820-90897839 None:intergenic 30.0%
!! AAAAGTGCTTTGGTTAACAT+GGG + Chr4:90894800-90894819 None:intergenic 30.0%
!! AATTTAGGTTTTCAACATGC+TGG - Chr4:90897238-90897257 MsG0480023887.01.T01:intron 30.0%
!! GTAAATCCACTAGCTTATTT+TGG - Chr4:90895231-90895250 MsG0480023887.01.T01:intron 30.0%
!! TATTGATGAAATTTTCAGGC+TGG - Chr4:90897360-90897379 MsG0480023887.01.T01:CDS 30.0%
!! TGTATAACATTTAGGTTGAG+GGG - Chr4:90895613-90895632 MsG0480023887.01.T01:intron 30.0%
!! TGTATGTGAAGTTTTGTAGA+AGG - Chr4:90899205-90899224 MsG0480023887.01.T01:intron 30.0%
!! TGTGATTGCTTTATTTCTGA+TGG + Chr4:90898219-90898238 None:intergenic 30.0%
!!! CCATTTTGTTTTGTCTAATC+AGG - Chr4:90896582-90896601 MsG0480023887.01.T01:intron 30.0%
!!! GAAAGTACCTTTTAGATTCA+CGG - Chr4:90897739-90897758 MsG0480023887.01.T01:intron 30.0%
!!! GTTATAGCTTTGGAGTTTTA+AGG - Chr4:90895283-90895302 MsG0480023887.01.T01:intron 30.0%
!!! TAGCTTATTTTGGAACCATA+GGG - Chr4:90895241-90895260 MsG0480023887.01.T01:intron 30.0%
AAACCTAAATTGGCACCAAT+CGG + Chr4:90897229-90897248 None:intergenic 35.0%
AAACCTTGGTCTCAATTCTT+TGG + Chr4:90898117-90898136 None:intergenic 35.0%
AAATTGATAGAGGGTCTTCT+TGG - Chr4:90898793-90898812 MsG0480023887.01.T01:intron 35.0%
AAGTGTGCAATTCAATTTGG+GGG + Chr4:90896148-90896167 None:intergenic 35.0%
AAGTGTGCAATTCACTTTAG+GGG + Chr4:90896314-90896333 None:intergenic 35.0%
ACCAAAATCAACTTGGATTG+AGG + Chr4:90898541-90898560 None:intergenic 35.0%
ACTCTTCTTACTACACACTA+CGG + Chr4:90894988-90895007 None:intergenic 35.0%
AGAGAATATCAATAAGCTGC+AGG + Chr4:90898965-90898984 None:intergenic 35.0%
AGCACTTGATTTCTTTGTTC+CGG + Chr4:90899079-90899098 None:intergenic 35.0%
AGCATGCAAATCTATACCAA+AGG + Chr4:90896683-90896702 None:intergenic 35.0%
AGGTTGAAACCAATTAACAC+CGG - Chr4:90898403-90898422 MsG0480023887.01.T01:intron 35.0%
AGTAAGAAGAGTAGATCAGA+TGG - Chr4:90894996-90895015 MsG0480023887.01.T01:intron 35.0%
AGTTGCATAGATCAGAAATG+GGG - Chr4:90898311-90898330 MsG0480023887.01.T01:intron 35.0%
ATATAGATGTTGCTGAGCTA+AGG - Chr4:90895535-90895554 MsG0480023887.01.T01:intron 35.0%
ATATGATCCAAAGTAAGCAC+AGG + Chr4:90895479-90895498 None:intergenic 35.0%
ATCAGAAATGGGGTAAAGAT+GGG - Chr4:90898321-90898340 MsG0480023887.01.T01:intron 35.0%
ATCATCTCAGTCATCTTATC+AGG - Chr4:90897446-90897465 MsG0480023887.01.T01:intron 35.0%
ATGGTTCCAAAATAAGCTAG+TGG + Chr4:90895240-90895259 None:intergenic 35.0%
CAAAGTGTGCAATTCACTTT+AGG + Chr4:90896316-90896335 None:intergenic 35.0%
CATGAATCCAAAACTCATGA+TGG + Chr4:90897571-90897590 None:intergenic 35.0%
CATTTCACCGTGAATCTAAA+AGG + Chr4:90897749-90897768 None:intergenic 35.0%
CCAAAGTGTGCAATTCAATT+TGG + Chr4:90896151-90896170 None:intergenic 35.0%
CCAAATTGAATTGCACACTT+TGG - Chr4:90896148-90896167 MsG0480023887.01.T01:intron 35.0%
CGATATAATGTCTCAGATGA+AGG - Chr4:90894641-90894660 MsG0480023887.01.T01:three_prime_UTR 35.0%
CTAAAGTGAATTGCACACTT+TGG - Chr4:90896314-90896333 MsG0480023887.01.T01:intron 35.0%
GAAAACTATGTTGGTACCAT+GGG - Chr4:90897500-90897519 MsG0480023887.01.T01:intron 35.0%
GAGGATAGTCAAATTACAAG+AGG - Chr4:90895018-90895037 MsG0480023887.01.T01:CDS 35.0%
GAGTTGCATAGATCAGAAAT+GGG - Chr4:90898310-90898329 MsG0480023887.01.T01:intron 35.0%
GATTCTGCTGCAGAAAAAAT+AGG + Chr4:90897614-90897633 None:intergenic 35.0%
GCTAATAAATGGTTGCTTCT+AGG - Chr4:90896700-90896719 MsG0480023887.01.T01:CDS 35.0%
GTTAGCAATAGCAATAAGGA+GGG + Chr4:90894704-90894723 None:intergenic 35.0%
GTTGACTGCAATTAAATCAC+TGG - Chr4:90899274-90899293 MsG0480023887.01.T01:CDS 35.0%
TACACCAAATTGAAAGGAGT+GGG + Chr4:90899155-90899174 None:intergenic 35.0%
TCATCAGTACAATATGACAG+CGG + Chr4:90898377-90898396 None:intergenic 35.0%
TCATTTAGTGGGATAAGACT+TGG - Chr4:90895795-90895814 MsG0480023887.01.T01:intron 35.0%
TCGTTACTGCATAATATTGC+AGG + Chr4:90895656-90895675 None:intergenic 35.0%
TGAAAACTATGTTGGTACCA+TGG - Chr4:90897499-90897518 MsG0480023887.01.T01:intron 35.0%
TGAGTTGCATAGATCAGAAA+TGG - Chr4:90898309-90898328 MsG0480023887.01.T01:intron 35.0%
TGCAATATTATGCAGTAACG+AGG - Chr4:90895655-90895674 MsG0480023887.01.T01:intron 35.0%
TGCTGCAGAAAAAATAGGAT+TGG + Chr4:90897609-90897628 None:intergenic 35.0%
TGTGAAGATGAATGAACAGA+GGG + Chr4:90897055-90897074 None:intergenic 35.0%
! AAAGTGCTTTGGTTAACATG+GGG + Chr4:90894799-90894818 None:intergenic 35.0%
! AAGGGTTAGCAATAGCAATA+AGG + Chr4:90894708-90894727 None:intergenic 35.0%
! AAGTCTTATCCCACTAAATG+AGG + Chr4:90895796-90895815 None:intergenic 35.0%
! AAGTTGATTCTTCGACATTC+CGG + Chr4:90894619-90894638 None:intergenic 35.0%
! ATTTTTGTGATTCTTCGGTG+CGG - Chr4:90895307-90895326 MsG0480023887.01.T01:intron 35.0%
! CAGGTTGGAAATATACCATT+TGG - Chr4:90898735-90898754 MsG0480023887.01.T01:intron 35.0%
! CTTTACACCATCATGAGTTT+TGG - Chr4:90897561-90897580 MsG0480023887.01.T01:intron 35.0%
! GGAGTCGTTTGAGTTATATA+AGG - Chr4:90896178-90896197 MsG0480023887.01.T01:intron 35.0%
! GTATATTTTTCTCCTCCTTC+CGG + Chr4:90898425-90898444 None:intergenic 35.0%
! TAAGCCTTATCTCACTAAGT+GGG + Chr4:90895164-90895183 None:intergenic 35.0%
! TCTGAAGTGTCACTACTATT+AGG + Chr4:90897657-90897676 None:intergenic 35.0%
!! AAAAAGGTGTTGCTAGAAAG+GGG - Chr4:90895577-90895596 MsG0480023887.01.T01:intron 35.0%
!! AGATTGTGTTATGTTTTGGG+TGG - Chr4:90895718-90895737 MsG0480023887.01.T01:intron 35.0%
!! CAAAAAGGTGTTGCTAGAAA+GGG - Chr4:90895576-90895595 MsG0480023887.01.T01:intron 35.0%
!! GAAAAGTGCTTTGGTTAACA+TGG + Chr4:90894801-90894820 None:intergenic 35.0%
!! GAGTCGTTTGAGTTGTATAA+GGG - Chr4:90896345-90896364 MsG0480023887.01.T01:intron 35.0%
!! GATTGTGTTATGTTTTGGGT+GGG - Chr4:90895719-90895738 MsG0480023887.01.T01:intron 35.0%
!!! ACCTCAATCCAAGTTGATTT+TGG - Chr4:90898537-90898556 MsG0480023887.01.T01:intron 35.0%
!!! CTAGCTTATTTTGGAACCAT+AGG - Chr4:90895240-90895259 MsG0480023887.01.T01:intron 35.0%
!!! TGATTGTTTTGAGGAGCTAT+TGG + Chr4:90896740-90896759 None:intergenic 35.0%
AAATGCCACAACAGCCTAAA+GGG - Chr4:90896963-90896982 MsG0480023887.01.T01:CDS 40.0%
AAGAAGAGTAGATCAGATGG+AGG - Chr4:90894999-90895018 MsG0480023887.01.T01:intron 40.0%
AAGCTGCAGGACAATTTCAA+GGG + Chr4:90898952-90898971 None:intergenic 40.0%
ACTTCCTCATACAAAGGTCA+AGG - Chr4:90899337-90899356 MsG0480023887.01.T01:CDS 40.0%
ACTTGATTTCTTTGTTCCGG+AGG + Chr4:90899076-90899095 None:intergenic 40.0%
AGTGTGCAATTCAATTTGGG+GGG + Chr4:90896147-90896166 None:intergenic 40.0%
AGTGTGCAATTCACTTTAGG+GGG + Chr4:90896313-90896332 None:intergenic 40.0%
ATCTCCCACTCCTTTCAATT+TGG - Chr4:90899148-90899167 MsG0480023887.01.T01:intron 40.0%
CTACACCAAATTGAAAGGAG+TGG + Chr4:90899156-90899175 None:intergenic 40.0%
CTGTGAAGATGAATGAACAG+AGG + Chr4:90897056-90897075 None:intergenic 40.0%
CTTATCCCACTAAATGAGGT+CGG + Chr4:90895792-90895811 None:intergenic 40.0%
CTTCCTCATACAAAGGTCAA+GGG - Chr4:90899338-90899357 MsG0480023887.01.T01:CDS 40.0%
GATCAGAAATGGGGTAAAGA+TGG - Chr4:90898320-90898339 MsG0480023887.01.T01:intron 40.0%
GCAGCAATGACAAATTTGTC+AGG + Chr4:90898457-90898476 None:intergenic 40.0%
GCATATTTCGCTGACAACTA+CGG + Chr4:90898181-90898200 None:intergenic 40.0%
GGTTAGCAATAGCAATAAGG+AGG + Chr4:90894705-90894724 None:intergenic 40.0%
GTATGTTGTGCTACAACTGT+TGG - Chr4:90897468-90897487 MsG0480023887.01.T01:intron 40.0%
TAACCCTTGACCTTTGTATG+AGG + Chr4:90899344-90899363 None:intergenic 40.0%
TAAGCTGCAGGACAATTTCA+AGG + Chr4:90898953-90898972 None:intergenic 40.0%
TAGTTGTCAGCGAAATATGC+AGG - Chr4:90898181-90898200 MsG0480023887.01.T01:intron 40.0%
TCACACATCACAACAAACCT+TGG + Chr4:90898131-90898150 None:intergenic 40.0%
TCTATGGTTTCTGCTCAGAT+CGG - Chr4:90898870-90898889 MsG0480023887.01.T01:intron 40.0%
TGAAACCAATTAACACCGGA+AGG - Chr4:90898407-90898426 MsG0480023887.01.T01:intron 40.0%
TGAGCAGAAACCATAGATGA+TGG + Chr4:90898867-90898886 None:intergenic 40.0%
TGCAAGGTATGGTTGCAAAA+AGG - Chr4:90895561-90895580 MsG0480023887.01.T01:intron 40.0%
TGTAGGATTAGGAGACATCT+TGG - Chr4:90895395-90895414 MsG0480023887.01.T01:intron 40.0%
TGTGGAAGTTGTGATGATTG+TGG + Chr4:90897022-90897041 None:intergenic 40.0%
TTATCATTAATGAGCGAGGC+AGG - Chr4:90895436-90895455 MsG0480023887.01.T01:intron 40.0%
TTCACAATAATTACCGCAGG+AGG + Chr4:90898918-90898937 None:intergenic 40.0%
TTGATGGAAGTTTGATTGGG+TGG - Chr4:90895685-90895704 MsG0480023887.01.T01:intron 40.0%
! AAGCCTTATCTCACTAAGTG+GGG + Chr4:90895163-90895182 None:intergenic 40.0%
! AATTGCACACTTTGGAAGAG+TGG - Chr4:90896322-90896341 MsG0480023887.01.T01:intron 40.0%
! AGAGGCATATGTGAAAATCC+AGG + Chr4:90897139-90897158 None:intergenic 40.0%
! ATTGCACACTTTGGAAGAGT+GGG - Chr4:90896323-90896342 MsG0480023887.01.T01:intron 40.0%
! CTAAGCCTTATCTCACTAAG+TGG + Chr4:90895165-90895184 None:intergenic 40.0%
! CTTTGGTTAACATGGGGTTT+TGG + Chr4:90894793-90894812 None:intergenic 40.0%
! GAAGTTTGATTGGGTGGATT+CGG - Chr4:90895691-90895710 MsG0480023887.01.T01:intron 40.0%
! GACTGAGATGATTGTTGACT+TGG + Chr4:90897438-90897457 None:intergenic 40.0%
! GCTAGGAGTGCAATTTATTG+TGG - Chr4:90895340-90895359 MsG0480023887.01.T01:intron 40.0%
! TCACTTTAGGGGGTCAAATA+AGG + Chr4:90896303-90896322 None:intergenic 40.0%
! TGAACACTTGGTCTTTGTGT+CGG + Chr4:90896776-90896795 None:intergenic 40.0%
! TGAGATTGATGACTCGTTGT+AGG + Chr4:90896920-90896939 None:intergenic 40.0%
! TGTGATGTGTGATGATGCAA+AGG - Chr4:90898139-90898158 MsG0480023887.01.T01:intron 40.0%
! TTAGGTTTTCAACATGCTGG+TGG - Chr4:90897241-90897260 MsG0480023887.01.T01:intron 40.0%
!! ACTGGTTGCTGATTGTTTTG+AGG + Chr4:90896749-90896768 None:intergenic 40.0%
!! AGAAACCTGGAAAAGTGCTT+TGG + Chr4:90894810-90894829 None:intergenic 40.0%
!! ATTGCACACTTTGGAATAGC+AGG - Chr4:90896157-90896176 MsG0480023887.01.T01:intron 40.0%
!! CCAGGTTTCTTTCTAGAACT+AGG - Chr4:90894820-90894839 MsG0480023887.01.T01:CDS 40.0%
!! CCTAGTTCTAGAAAGAAACC+TGG + Chr4:90894823-90894842 None:intergenic 40.0%
!! GAAGTCATGCTTTTTGTGTC+AGG - Chr4:90898716-90898735 MsG0480023887.01.T01:intron 40.0%
!! GCAAAAAGGTGTTGCTAGAA+AGG - Chr4:90895575-90895594 MsG0480023887.01.T01:intron 40.0%
!! GGAGCTATTGGTTGAACTTT+TGG + Chr4:90896728-90896747 None:intergenic 40.0%
!! GGAGTCGTTTGAGTTGTATA+AGG - Chr4:90896344-90896363 MsG0480023887.01.T01:intron 40.0%
!! GTTAACCAAAGCACTTTTCC+AGG - Chr4:90894802-90894821 MsG0480023887.01.T01:exon 40.0%
!! GTTTTGGATGAGGATCTGTT+TGG + Chr4:90894777-90894796 None:intergenic 40.0%
!! TCATGCTTTTTGTGTCAGGT+TGG - Chr4:90898720-90898739 MsG0480023887.01.T01:intron 40.0%
!! TGATGTGTCGGTTATAGCTT+TGG - Chr4:90895273-90895292 MsG0480023887.01.T01:intron 40.0%
!!! GCTGTCATTTTCACAACCTT+TGG - Chr4:90896664-90896683 MsG0480023887.01.T01:CDS 40.0%
!!! TTAACATGGGGTTTTGGATG+AGG + Chr4:90894787-90894806 None:intergenic 40.0%
AACAGATGCTGGAGCTACTT+GGG + Chr4:90896999-90897018 None:intergenic 45.0%
AACCAATTAACACCGGAAGG+AGG - Chr4:90898410-90898429 MsG0480023887.01.T01:intron 45.0%
AACGTAGATCCAACACTAGG+AGG + Chr4:90897393-90897412 None:intergenic 45.0%
AATCAGGCGCAAATCATGCT+TGG - Chr4:90896598-90896617 MsG0480023887.01.T01:intron 45.0%
AATCAGGTTTACGACGGCAA+AGG - Chr4:90894522-90894541 MsG0480023887.01.T01:three_prime_UTR 45.0%
ACATCACTAGCAATGCCCTA+TGG + Chr4:90895259-90895278 None:intergenic 45.0%
AGCTAAGGTTGTGCAAGGTA+TGG - Chr4:90895550-90895569 MsG0480023887.01.T01:intron 45.0%
AGGGTGAGAAAGAGAGAAAG+AGG + Chr4:90894685-90894704 None:intergenic 45.0%
ATCGGCAATCAGGTTTACGA+CGG - Chr4:90894516-90894535 MsG0480023887.01.T01:three_prime_UTR 45.0%
ATGGCCGGAAAACAAGTAAG+CGG - Chr4:90894570-90894589 MsG0480023887.01.T01:three_prime_UTR 45.0%
CAAATGCCACAACAGCCTAA+AGG - Chr4:90896962-90896981 MsG0480023887.01.T01:CDS 45.0%
CAGCACAAGATGTGCACAAA+TGG + Chr4:90895843-90895862 None:intergenic 45.0%
CTAAATGAGGTCGGCACAAA+TGG + Chr4:90895783-90895802 None:intergenic 45.0%
CTAAATTGGCACCAATCGGT+GGG + Chr4:90897225-90897244 None:intergenic 45.0%
CTCAAACTCAAATTCCTCCC+AGG - Chr4:90896849-90896868 MsG0480023887.01.T01:CDS 45.0%
CTGCTGAAATCAGACCCAAA+TGG + Chr4:90898753-90898772 None:intergenic 45.0%
CTTATCTCACTAAGTGGGGT+CGG + Chr4:90895159-90895178 None:intergenic 45.0%
GAAAATCCAGGAGTCTGCAA+TGG + Chr4:90897127-90897146 None:intergenic 45.0%
GAAGATGAATGAACAGAGGG+TGG + Chr4:90897052-90897071 None:intergenic 45.0%
GAGAATCTAGCACAGCATTC+TGG - Chr4:90898831-90898850 MsG0480023887.01.T01:intron 45.0%
GATGATTGTGGAACAGATGC+TGG + Chr4:90897010-90897029 None:intergenic 45.0%
GATTTCTTTGTTCCGGAGGT+AGG + Chr4:90899072-90899091 None:intergenic 45.0%
GCAGATAAATCTCCTACCTC+CGG - Chr4:90899057-90899076 MsG0480023887.01.T01:intron 45.0%
GCTGGGATAGTTTCTGTTGT+AGG - Chr4:90895378-90895397 MsG0480023887.01.T01:intron 45.0%
GGAACAGCAGCATATGAAAC+TGG + Chr4:90896899-90896918 None:intergenic 45.0%
GGACCAAAGAATTGAGACCA+AGG - Chr4:90898111-90898130 MsG0480023887.01.T01:intron 45.0%
GGTAGGAGATTTATCTGCTC+CGG + Chr4:90899055-90899074 None:intergenic 45.0%
GGTTCAGTTCATATGCAGCT+GGG - Chr4:90895361-90895380 MsG0480023887.01.T01:intron 45.0%
GTGACACTTCAGACGATGTT+AGG - Chr4:90897664-90897683 MsG0480023887.01.T01:intron 45.0%
TAAATTGGCACCAATCGGTG+GGG + Chr4:90897224-90897243 None:intergenic 45.0%
TAGCGAACCTGTGCTTACTT+TGG - Chr4:90895469-90895488 MsG0480023887.01.T01:intron 45.0%
TCAATTTGGGGGGTCAAGTA+AGG + Chr4:90896137-90896156 None:intergenic 45.0%
TCGGCTACATGGATCCTAAT+GGG - Chr4:90897897-90897916 MsG0480023887.01.T01:intron 45.0%
TCTGATTTCAGCAGTCAAGC+TGG - Chr4:90898759-90898778 MsG0480023887.01.T01:intron 45.0%
TGGCTTACATGAAAGATGGG+CGG + Chr4:90897286-90897305 None:intergenic 45.0%
TGGTTCAGTTCATATGCAGC+TGG - Chr4:90895360-90895379 MsG0480023887.01.T01:intron 45.0%
TGTGAAGTGTGAAGTAGCAG+TGG - Chr4:90898078-90898097 MsG0480023887.01.T01:intron 45.0%
TTGTCAGCGAAATATGCAGG+TGG - Chr4:90898184-90898203 MsG0480023887.01.T01:intron 45.0%
TTTGTGCACATCTTGTGCTG+TGG - Chr4:90895843-90895862 MsG0480023887.01.T01:intron 45.0%
! CATTTTCGGAATAAGCCACC+AGG + Chr4:90897806-90897825 None:intergenic 45.0%
! GACTGTGAGAGGTTTTGCAT+CGG - Chr4:90894498-90894517 MsG0480023887.01.T01:three_prime_UTR 45.0%
! GCATATGAAACTGGCACTGA+AGG + Chr4:90896890-90896909 None:intergenic 45.0%
! GTGTGATGATGCAAAGGAGT+GGG - Chr4:90898145-90898164 MsG0480023887.01.T01:intron 45.0%
! TGTGTGATGATGCAAAGGAG+TGG - Chr4:90898144-90898163 MsG0480023887.01.T01:intron 45.0%
! TTATCTTGAGTTGCTGCTCC+TGG - Chr4:90897785-90897804 MsG0480023887.01.T01:intron 45.0%
! TTGTGCCGACCTCATTTAGT+GGG - Chr4:90895784-90895803 MsG0480023887.01.T01:intron 45.0%
! TTTGTGCCGACCTCATTTAG+TGG - Chr4:90895783-90895802 MsG0480023887.01.T01:intron 45.0%
!! GGCATTTGAGTTGGATGAAG+TGG + Chr4:90897079-90897098 None:intergenic 45.0%
!!! AGGCTGATTTTGGTGTTTCC+TGG + Chr4:90896870-90896889 None:intergenic 45.0%
!!! GGCTGATTTTGGTGTTTCCT+GGG + Chr4:90896869-90896888 None:intergenic 45.0%
!!! TGATTTTGGTGTTTCCTGGG+AGG + Chr4:90896866-90896885 None:intergenic 45.0%
AAATTGGCACCAATCGGTGG+GGG + Chr4:90897223-90897242 None:intergenic 50.0%
AATGGTGCAGTCGCAACAAG+CGG - Chr4:90896621-90896640 MsG0480023887.01.T01:intron 50.0%
ACAGATGCTGGAGCTACTTG+GGG + Chr4:90896998-90897017 None:intergenic 50.0%
ACCAATCGGTGGGGGATATT+GGG + Chr4:90897215-90897234 None:intergenic 50.0%
AGATGCCCTTTAGGCTGTTG+TGG + Chr4:90896971-90896990 None:intergenic 50.0%
AGCAATGCCTTCTCCATGTC+TGG + Chr4:90899010-90899029 None:intergenic 50.0%
ATGCTGTGCTAGATTCTCCG+AGG + Chr4:90898829-90898848 None:intergenic 50.0%
ATTGGAGCAGGCTGAACACT+TGG + Chr4:90896788-90896807 None:intergenic 50.0%
CAGAGCATGACAAACACCCA+TGG + Chr4:90897519-90897538 None:intergenic 50.0%
CATCAACCATTGCAGACTCC+TGG - Chr4:90897118-90897137 MsG0480023887.01.T01:CDS 50.0%
CATGCAGTTGACACCAGACA+TGG - Chr4:90898994-90899013 MsG0480023887.01.T01:intron 50.0%
CCAATATTGCCTGTGCAAGG+TGG - Chr4:90896803-90896822 MsG0480023887.01.T01:CDS 50.0%
CCACCTTGCACAGGCAATAT+TGG + Chr4:90896806-90896825 None:intergenic 50.0%
CCTAAATTGGCACCAATCGG+TGG + Chr4:90897226-90897245 None:intergenic 50.0%
CGACCCCACTTAGTGAGATA+AGG - Chr4:90895157-90895176 MsG0480023887.01.T01:CDS 50.0%
CTTACATGAAAGATGGGCGG+AGG + Chr4:90897283-90897302 None:intergenic 50.0%
CTTATCCCACCAAGTGGTGT+CGG - Chr4:90897878-90897897 MsG0480023887.01.T01:intron 50.0%
GAACAGATGCTGGAGCTACT+TGG + Chr4:90897000-90897019 None:intergenic 50.0%
GACATGGCAGACATCCCATT+AGG + Chr4:90897914-90897933 None:intergenic 50.0%
GAGGCAGTTGGCATTTGAGT+TGG + Chr4:90897088-90897107 None:intergenic 50.0%
GATGAATGAACAGAGGGTGG+AGG + Chr4:90897049-90897068 None:intergenic 50.0%
GCTCCAATATTGCCTGTGCA+AGG - Chr4:90896800-90896819 MsG0480023887.01.T01:CDS 50.0%
GGAAAACAAGTAAGCGGCGA+GGG - Chr4:90894576-90894595 MsG0480023887.01.T01:three_prime_UTR 50.0%
GGATGGAAGGTTTGCACTGA+AGG + Chr4:90897193-90897212 None:intergenic 50.0%
GGCGCAAATCATGCTTGGAA+TGG - Chr4:90896603-90896622 MsG0480023887.01.T01:intron 50.0%
GGGAACGTAGATCCAACACT+AGG + Chr4:90897396-90897415 None:intergenic 50.0%
GGTGCAAAACCTCCTAGTGT+TGG - Chr4:90897381-90897400 MsG0480023887.01.T01:intron 50.0%
GGTGGCATACAAGATCAAGC+AGG - Chr4:90896821-90896840 MsG0480023887.01.T01:CDS 50.0%
GTCGGCTACATGGATCCTAA+TGG - Chr4:90897896-90897915 MsG0480023887.01.T01:intron 50.0%
GTTGACACCAGACATGGAGA+AGG - Chr4:90899000-90899019 MsG0480023887.01.T01:intron 50.0%
GTTTGCACTGAAGGTGGTCT+GGG + Chr4:90897184-90897203 None:intergenic 50.0%
TCCTCAGGGACCATCATCTA+TGG - Chr4:90898854-90898873 MsG0480023887.01.T01:intron 50.0%
TCTTGTATGCCACCTTGCAC+AGG + Chr4:90896815-90896834 None:intergenic 50.0%
TGCAACGAATGTGCAGCTGT+GGG + Chr4:90896944-90896963 None:intergenic 50.0%
TGCACAGGCAATATTGGAGC+AGG + Chr4:90896800-90896819 None:intergenic 50.0%
TGCTGAGCTAAGGTTGTGCA+AGG - Chr4:90895545-90895564 MsG0480023887.01.T01:intron 50.0%
TGCTGTGCTAGATTCTCCGA+GGG + Chr4:90898828-90898847 None:intergenic 50.0%
TGGAAGGTTTGCACTGAAGG+TGG + Chr4:90897190-90897209 None:intergenic 50.0%
TGGGTGTTTGTCATGCTCTG+TGG - Chr4:90897519-90897538 MsG0480023887.01.T01:intron 50.0%
TTCACGGACGCTCTTTCAGT+CGG - Chr4:90895972-90895991 MsG0480023887.01.T01:intron 50.0%
TTGCAACGAATGTGCAGCTG+TGG + Chr4:90896945-90896964 None:intergenic 50.0%
TTGGATCTACGTTCCCACCA+GGG - Chr4:90897400-90897419 MsG0480023887.01.T01:intron 50.0%
! ACAGAGGGTGGAGGTATATG+TGG + Chr4:90897040-90897059 None:intergenic 50.0%
! ACCATAGATGATGGTCCCTG+AGG + Chr4:90898858-90898877 None:intergenic 50.0%
! CAAAGCCTTATCCCACCAAG+TGG - Chr4:90897872-90897891 MsG0480023887.01.T01:intron 50.0%
! CACTTGGTGGGATAAGGCTT+TGG + Chr4:90897874-90897893 None:intergenic 50.0%
! CTCCTCCTTCCGGTGTTAAT+TGG + Chr4:90898415-90898434 None:intergenic 50.0%
! GGGCATTGCTAGTGATGTGT+CGG - Chr4:90895261-90895280 MsG0480023887.01.T01:intron 50.0%
!! CCACCGATTGGTGCCAATTT+AGG - Chr4:90897223-90897242 MsG0480023887.01.T01:intron 50.0%
!! CTCGCCGCTTACTTGTTTTC+CGG + Chr4:90894577-90894596 None:intergenic 50.0%
!! CTGGCACTGAAGGCTGATTT+TGG + Chr4:90896880-90896899 None:intergenic 50.0%
!! GAGGTTTTGCATCGGCAATC+AGG - Chr4:90894506-90894525 MsG0480023887.01.T01:three_prime_UTR 50.0%
!! GGATCTGTTTGGCTTGTTGC+TGG + Chr4:90894766-90894785 None:intergenic 50.0%
AACGAGGTCTTCGCAATGGC+CGG - Chr4:90894555-90894574 MsG0480023887.01.T01:three_prime_UTR 55.0%
AATGCCAACTGCCTCGAGTC+AGG - Chr4:90897093-90897112 MsG0480023887.01.T01:CDS 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + Chr4:90895151-90895170 None:intergenic 55.0%
AGAGGGTCTTCTTGGATGCC+TGG - Chr4:90898801-90898820 MsG0480023887.01.T01:intron 55.0%
AGCACAGCATTCTGGTCCTC+AGG - Chr4:90898839-90898858 MsG0480023887.01.T01:intron 55.0%
ATAATTACCGCAGGAGGCCG+AGG + Chr4:90898912-90898931 None:intergenic 55.0%
ATGTAGCCGACACCACTTGG+TGG + Chr4:90897887-90897906 None:intergenic 55.0%
CACCAATCGGTGGGGGATAT+TGG + Chr4:90897216-90897235 None:intergenic 55.0%
CATGAAAGATGGGCGGAGGA+AGG + Chr4:90897279-90897298 None:intergenic 55.0%
CCAATCGGTGGGGGATATTG+GGG + Chr4:90897214-90897233 None:intergenic 55.0%
CGACAACGAGGTCTTCGCAA+TGG - Chr4:90894551-90894570 MsG0480023887.01.T01:three_prime_UTR 55.0%
CGAGGGTTTATCAGCGAACC+TGG - Chr4:90894593-90894612 MsG0480023887.01.T01:three_prime_UTR 55.0%
CGGAAAACAAGTAAGCGGCG+AGG - Chr4:90894575-90894594 MsG0480023887.01.T01:three_prime_UTR 55.0%
GATTCTTCGACATTCCGGCC+AGG + Chr4:90894614-90894633 None:intergenic 55.0%
GCACAGCATTCTGGTCCTCA+GGG - Chr4:90898840-90898859 MsG0480023887.01.T01:intron 55.0%
GCAGGTCATGAGTCTCACAC+CGG - Chr4:90899033-90899052 MsG0480023887.01.T01:intron 55.0%
GGGGGGACTTCCTCATACAA+AGG - Chr4:90899331-90899350 MsG0480023887.01.T01:CDS 55.0%
GGTGCGGTATTTGTGCAGCT+AGG - Chr4:90895323-90895342 MsG0480023887.01.T01:intron 55.0%
GGTTTATCAGCGAACCTGGC+CGG - Chr4:90894597-90894616 MsG0480023887.01.T01:three_prime_UTR 55.0%
GGTTTGCACTGAAGGTGGTC+TGG + Chr4:90897185-90897204 None:intergenic 55.0%
GTTGGATCTACGTTCCCACC+AGG - Chr4:90897399-90897418 MsG0480023887.01.T01:intron 55.0%
GTTTACGACGGCAAAGGCTG+CGG - Chr4:90894528-90894547 MsG0480023887.01.T01:three_prime_UTR 55.0%
TCCATGTAGCCGACACCACT+TGG + Chr4:90897890-90897909 None:intergenic 55.0%
TGGGGAGTCAGATGCCCTTT+AGG + Chr4:90896980-90896999 None:intergenic 55.0%
TGGGGGATATTGGGGATGGA+AGG + Chr4:90897206-90897225 None:intergenic 55.0%
TGTAGCCGACACCACTTGGT+GGG + Chr4:90897886-90897905 None:intergenic 55.0%
TTCTTGGATGCCTGGTCCCT+CGG - Chr4:90898809-90898828 MsG0480023887.01.T01:intron 55.0%
! CGACACCACTTGGTGGGATA+AGG + Chr4:90897880-90897899 None:intergenic 55.0%
! GTGCTGCTAATCAGCCTCCT+CGG - Chr4:90898892-90898911 MsG0480023887.01.T01:intron 55.0%
! GTGTTGCTAGAAAGGGGCTG+TGG - Chr4:90895583-90895602 MsG0480023887.01.T01:intron 55.0%
! TCTTGAGTTGCTGCTCCTGG+TGG - Chr4:90897788-90897807 MsG0480023887.01.T01:intron 55.0%
!! ACCAAGTGGTGTCGGCTACA+TGG - Chr4:90897886-90897905 MsG0480023887.01.T01:intron 55.0%
!! GGAGAAGGCATTGCTTCAGC+AGG - Chr4:90899015-90899034 MsG0480023887.01.T01:intron 55.0%
!! GGTCTTTGTGTCGGCTGTAC+TGG + Chr4:90896767-90896786 None:intergenic 55.0%
ACTGAAGGTGGTCTGGGCTG+CGG + Chr4:90897178-90897197 None:intergenic 60.0%
ATCTACGTTCCCACCAGGGC+AGG - Chr4:90897404-90897423 MsG0480023887.01.T01:intron 60.0%
CCCCAATATCCCCCACCGAT+TGG - Chr4:90897211-90897230 MsG0480023887.01.T01:intron 60.0%
GCTAGATTCTCCGAGGGACC+AGG + Chr4:90898822-90898841 None:intergenic 60.0%
GGTGGCAATGGTGGTTGCAG+AGG + Chr4:90897157-90897176 None:intergenic 60.0%
GTAGTAGTGCCTGCCCTGGT+GGG + Chr4:90897416-90897435 None:intergenic 60.0%
TCGGTGGGGGATATTGGGGA+TGG + Chr4:90897210-90897229 None:intergenic 60.0%
! CTTGGTAGTAGTGCCTGCCC+TGG + Chr4:90897420-90897439 None:intergenic 60.0%
! TGGTTGATGCGCCTGACTCG+AGG + Chr4:90897107-90897126 None:intergenic 60.0%
ATTACCGCAGGAGGCCGAGG+AGG + Chr4:90898909-90898928 None:intergenic 65.0%
CAAAGGCTGCGGCGACAACG+AGG - Chr4:90894539-90894558 MsG0480023887.01.T01:three_prime_UTR 65.0%
GGTAGTAGTGCCTGCCCTGG+TGG + Chr4:90897417-90897436 None:intergenic 65.0%
! TGCGCCTGACTCGAGGCAGT+TGG + Chr4:90897100-90897119 None:intergenic 65.0%
CTGGGCTGCGGTGGCAATGG+TGG + Chr4:90897166-90897185 None:intergenic 70.0%
GAAGGTGGTCTGGGCTGCGG+TGG + Chr4:90897175-90897194 None:intergenic 70.0%
GGTCTGGGCTGCGGTGGCAA+TGG + Chr4:90897169-90897188 None:intergenic 70.0%
TCAGCCTCCTCGGCCTCCTG+CGG - Chr4:90898902-90898921 MsG0480023887.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 90894492 90899442 90894492 ID=MsG0480023887.01;Name=MsG0480023887.01
Chr4 mRNA 90894492 90899442 90894492 ID=MsG0480023887.01.T01;Parent=MsG0480023887.01;Name=MsG0480023887.01.T01;_AED=0.39;_eAED=0.42;_QI=78|0.66|0.71|1|0.66|0.71|7|316|404
Chr4 exon 90894492 90894933 90894492 ID=MsG0480023887.01.T01:exon:7940;Parent=MsG0480023887.01.T01
Chr4 exon 90895011 90895196 90895011 ID=MsG0480023887.01.T01:exon:7939;Parent=MsG0480023887.01.T01
Chr4 exon 90896467 90896556 90896467 ID=MsG0480023887.01.T01:exon:7938;Parent=MsG0480023887.01.T01
Chr4 exon 90896637 90897212 90896637 ID=MsG0480023887.01.T01:exon:7937;Parent=MsG0480023887.01.T01
Chr4 exon 90897292 90897388 90897292 ID=MsG0480023887.01.T01:exon:7936;Parent=MsG0480023887.01.T01
Chr4 exon 90898430 90898476 90898430 ID=MsG0480023887.01.T01:exon:7935;Parent=MsG0480023887.01.T01
Chr4 exon 90899272 90899442 90899272 ID=MsG0480023887.01.T01:exon:7934;Parent=MsG0480023887.01.T01
Chr4 five_prime_UTR 90899365 90899442 90899365 ID=MsG0480023887.01.T01:five_prime_utr;Parent=MsG0480023887.01.T01
Chr4 CDS 90899272 90899364 90899272 ID=MsG0480023887.01.T01:cds;Parent=MsG0480023887.01.T01
Chr4 CDS 90898430 90898476 90898430 ID=MsG0480023887.01.T01:cds;Parent=MsG0480023887.01.T01
Chr4 CDS 90897292 90897388 90897292 ID=MsG0480023887.01.T01:cds;Parent=MsG0480023887.01.T01
Chr4 CDS 90896637 90897212 90896637 ID=MsG0480023887.01.T01:cds;Parent=MsG0480023887.01.T01
Chr4 CDS 90896467 90896556 90896467 ID=MsG0480023887.01.T01:cds;Parent=MsG0480023887.01.T01
Chr4 CDS 90895011 90895196 90895011 ID=MsG0480023887.01.T01:cds;Parent=MsG0480023887.01.T01
Chr4 CDS 90894808 90894933 90894808 ID=MsG0480023887.01.T01:cds;Parent=MsG0480023887.01.T01
Chr4 three_prime_UTR 90894492 90894807 90894492 ID=MsG0480023887.01.T01:three_prime_utr;Parent=MsG0480023887.01.T01
Gene Sequence

>MsG0480023887.01.T01

ATGGCCGGAAAACAAGTAAGCGGCGAGGGTTTATCAGCGAACCTGGCCGGAATGTCGAAGAATCAACTTTACGATATAATGTCTCAGATGAAGGTATTATGCAGTAGCGAACCTGTGCTTACTTTGGATCATATATTTGTTTTCATGAGTTATTTGTTTAACTTTGAGATTTTTGTCCATTTTGTTTTGTCTAATCAGGCGCAAATCATGCTTGGAATGGTGCAGTCGCAACAAGCGGTTCCAAAAGTTCAACCAATAGCTCCTCAAAACAATCAGCAACCAGTACAGCCGACACAAAGACCAAGTGTTCAGCCTGCTCCAATATTGCCTGTGCAAGGTGGCATACAAGATCAAGCAGGTGTATCTCAAACTCAAATTCCTCCCAGGAAACACCAAAATCAGCCTTCAGTGCCAGTTTCATATGCTGCTGTTCCTACAACGAGTCATCAATCTCAACCCACAGCTGCACATTCGTTGCAAATGCCACAACAGCCTAAAGGGCATCTGACTCCCCAAGTAGCTCCAGCATCTGTTCCACAATCATCACAACTTCCACATATACCTCCACCCTCTGTTCATTCATCTTCACAGCCACTTCATCCAACTCAAATGCCAACTGCCTCGAGTCAGGCGCATCAACCATTGCAGACTCCTGGATTTTCACATATGCCTCTGCAACCACCATTGCCACCGCAGCCCAGACCACCTTCAGTGCAAACCTTCCATCCCCAATATCCCCCACCGATTGGTGCCAATTTAGGTTTTCAACATGCTGGTGGTGCTTCTCACAACCTTCCTCCGCCCATCTTTCATGCTGGTGCAAAACCTCCTAGTGTTGGATCTACGTTCCCACCAGGGCAGGCACTACTACCAAGTCAACAATCATCTCAGTCATCTTATCAGGTTGGAAATATACCATTTGGGTCTGATTTCAGCAGTCAAGCTGGAAATGCAATGCAAATTGATAGAGGGTCTTCTTGGATGCCTGGTCCCTCGGAGAATCTAGCACAGCATTCTGGTCCTCAGGGACCATCATCTATGGTTTCTGCTCAGATCGGTGCTGCTAATCAGCCTCCTCGGCCTCCTGCGTTGACACCAGACATGGAGAAGGCATTGCTTCAGCAGGTCATGAGTCTCACACCGGAGCAGATAAATCTCCTACCTCCGGAACAAAGAAATCAAGTGCTGCAACTGCAGCTGATGTTGCGTAAATGA
Protein sequence

>MsG0480023887.01.T01

MAGKQVSGEGLSANLAGMSKNQLYDIMSQMKVLCSSEPVLTLDHIFVFMSYLFNFEIFVHFVLSNQAQIMLGMVQSQQAVPKVQPIAPQNNQQPVQPTQRPSVQPAPILPVQGGIQDQAGVSQTQIPPRKHQNQPSVPVSYAAVPTTSHQSQPTAAHSLQMPQQPKGHLTPQVAPASVPQSSQLPHIPPPSVHSSSQPLHPTQMPTASSQAHQPLQTPGFSHMPLQPPLPPQPRPPSVQTFHPQYPPPIGANLGFQHAGGASHNLPPPIFHAGAKPPSVGSTFPPGQALLPSQQSSQSSYQVGNIPFGSDFSSQAGNAMQIDRGSSWMPGPSENLAQHSGPQGPSSMVSAQIGAANQPPRPPALTPDMEKALLQQVMSLTPEQINLLPPEQRNQVLQLQLMLRK*