AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880047285.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047285.01.T01 MTR_4g123593 93.886 229 13 1 1 229 1 228 1.51e-120 342
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047285.01.T01 AT3G43520 69.748 119 35 1 111 229 123 240 5.91e-51 166
MsG0880047285.01.T01 AT2G26240 63.810 105 38 0 124 228 4 108 4.80e-38 128

Find 96 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCCTCTTGTTATGAAATT+TGG 0.026882 8:+84177228 MsG0880047285.01.T01:three_prime_UTR
CCCCTCTTGTTATGAAATTT+GGG 0.209009 8:+84177229 MsG0880047285.01.T01:three_prime_UTR
TAGACATTTGTTGTAAAATA+AGG 0.232439 8:+84177292 MsG0880047285.01.T01:three_prime_UTR
AAAGGAAACGGAGACGATTT+TGG 0.240726 8:+84174474 MsG0880047285.01.T01:CDS
TAGGTCAAATTGACTGGTTT+TGG 0.265563 8:-84174409 None:intergenic
GAAATCAGGGAAGGTCTTTC+CGG 0.282767 8:+84177083 MsG0880047285.01.T01:CDS
GGAGGGTGGGATCGGGTTGT+AGG 0.304663 8:-84174288 None:intergenic
TTGTATTCAGCAAAGTTTAC+AGG 0.324932 8:-84177205 None:intergenic
GGTTCTCGTTTCAAGAAATC+AGG 0.336113 8:+84177069 MsG0880047285.01.T01:CDS
TTGACAGCGGGTGGTGTAAT+GGG 0.345679 8:+84175743 MsG0880047285.01.T01:intron
TGATGCAAGAACAGGTCTTC+CGG 0.347788 8:-84175849 None:intergenic
TTTGACAGCGGGTGGTGTAA+TGG 0.350276 8:+84175742 MsG0880047285.01.T01:intron
TGGCAGCCAGAAGTCACTTT+TGG 0.366373 8:+84175778 MsG0880047285.01.T01:CDS
GGTGGTGGTGGTGAAGGAGG+AGG 0.373824 8:+84174507 MsG0880047285.01.T01:CDS
GGTGGTGAAGGAGGAGGCGG+AGG 0.375033 8:+84174513 MsG0880047285.01.T01:CDS
ATGGTTTATGTTTGTCATAA+AGG 0.380251 8:+84177269 MsG0880047285.01.T01:three_prime_UTR
TGCTGCACTTCTTGTGGTGA+TGG 0.380439 8:+84177047 MsG0880047285.01.T01:CDS
GGCGGAGGAGGTGGTGGTGG+TGG 0.382279 8:+84174495 MsG0880047285.01.T01:CDS
GCCGCCGGTAATGTCTAAAT+CGG 0.388850 8:-84174439 None:intergenic
GAGGGAAGGAAGTGTTGAAC+TGG 0.390629 8:-84174256 None:intergenic
GGTGGTGGTGAAGGAGGAGG+CGG 0.392210 8:+84174510 MsG0880047285.01.T01:CDS
TAGTGATGGGAGGGTGGGAT+CGG 0.412032 8:-84174296 None:intergenic
TGCATAGGTTCAAACACAAC+CGG 0.412204 8:-84177372 None:intergenic
CCGCCGGTAATGTCTAAATC+GGG 0.413389 8:-84174438 None:intergenic
CCCCAGCCAAAAGTGACTTC+TGG 0.415128 8:-84175784 None:intergenic
TCACTGGAAGAAGATTCTTT+TGG 0.418232 8:-84174177 None:intergenic
CCATTGACGAAAGAAGGTTC+TGG 0.425009 8:-84174206 None:intergenic
TTTGGCGGAGGAGGTGGTGG+TGG 0.425679 8:+84174492 MsG0880047285.01.T01:CDS
CTTGCATCATCTGTGGGCCT+TGG 0.426584 8:+84175863 MsG0880047285.01.T01:CDS
CCAGAACCTTCTTTCGTCAA+TGG 0.430434 8:+84174206 MsG0880047285.01.T01:exon
GATGCAAGAACAGGTCTTCC+GGG 0.430490 8:-84175848 None:intergenic
AGAGACAAGTAAGGGAAAGA+AGG 0.435812 8:-84174345 None:intergenic
GCTGCACTTCTTGTGGTGAT+GGG 0.443502 8:+84177048 MsG0880047285.01.T01:CDS
AGCGAGTTGAGAATGTGAAT+TGG 0.445867 8:-84174370 None:intergenic
AGTGATGGGAGGGTGGGATC+GGG 0.446835 8:-84174295 None:intergenic
ATGCATATGCTGTTGGAACT+TGG 0.448453 8:+84177390 MsG0880047285.01.T01:three_prime_UTR
TTTCTGCCATTGACGAAAGA+AGG 0.457559 8:-84174212 None:intergenic
GGCACTTAGGTCAAATTGAC+TGG 0.474158 8:-84174415 None:intergenic
ACCTGTTCTTGCATCATCTG+TGG 0.483230 8:+84175856 MsG0880047285.01.T01:CDS
AGAAGGAGGAGAAGCGATGA+AGG 0.484758 8:-84174328 None:intergenic
CCCACAGATGATGCAAGAAC+AGG 0.490656 8:-84175857 None:intergenic
CTAGGTTATGCTATTCTCGT+TGG 0.491350 8:+84174615 MsG0880047285.01.T01:CDS
AAGGATCTGACGGTGATAAG+AGG 0.499849 8:+84174559 MsG0880047285.01.T01:CDS
GAGTAATAGTGATGGGAGGG+TGG 0.503149 8:-84174302 None:intergenic
AACAGGTCTTCCGGGTAGCT+CGG 0.505808 8:-84175840 None:intergenic
TTTGATATCACCGCCGCCGC+CGG 0.506217 8:-84174454 None:intergenic
TTAGACATTACCGGCGGCGG+CGG 0.514783 8:+84174444 MsG0880047285.01.T01:CDS
GGTTATGCTATTCTCGTTGG+AGG 0.515433 8:+84174618 MsG0880047285.01.T01:CDS
TGAACCTATGCATATGCTGT+TGG 0.516828 8:+84177383 MsG0880047285.01.T01:three_prime_UTR
AAGGAGCGAGTAATAGTGAT+GGG 0.520836 8:-84174309 None:intergenic
CCTGTTCTTGCATCATCTGT+GGG 0.521720 8:+84175857 MsG0880047285.01.T01:CDS
GACAAGTAAGGGAAAGAAGG+AGG 0.523401 8:-84174342 None:intergenic
GAGGGTGGGATCGGGTTGTA+GGG 0.526739 8:-84174287 None:intergenic
GGGTTTGTGCTGTAGACCCA+TGG 0.529398 8:+84177250 MsG0880047285.01.T01:three_prime_UTR
AGCGAGTAATAGTGATGGGA+GGG 0.530652 8:-84174305 None:intergenic
GGCGGTGATATCAAAGGAAA+CGG 0.540755 8:+84174462 MsG0880047285.01.T01:CDS
GATAGTAACAAAGGCGAGGA+AGG 0.548487 8:+84174540 MsG0880047285.01.T01:CDS
CATATCTGCTGCACTTCTTG+TGG 0.550309 8:+84177041 MsG0880047285.01.T01:CDS
CCCTCTTGTTATGAAATTTG+GGG 0.553952 8:+84177230 MsG0880047285.01.T01:three_prime_UTR
TCAGGGAAGGTCTTTCCGGC+AGG 0.561022 8:+84177087 MsG0880047285.01.T01:CDS
CATTTGTTGTAAAATAAGGA+TGG 0.562464 8:+84177296 MsG0880047285.01.T01:three_prime_UTR
CTTGTGTCGTTCATAATGAC+CGG 0.562716 8:+84177120 MsG0880047285.01.T01:CDS
ACAAGTGACACAACACCTGC+CGG 0.564042 8:-84177102 None:intergenic
GGTTGTAGGGCGAAGAGAGA+GGG 0.564448 8:-84174274 None:intergenic
ATGACCGGTGGTTACTTGCA+TGG 0.564829 8:+84177135 MsG0880047285.01.T01:CDS
GTAGGGCGAAGAGAGAGGGA+AGG 0.571612 8:-84174270 None:intergenic
TCGCACTAGAATGTAAATAA+CGG 0.573030 8:+84177171 MsG0880047285.01.T01:exon
ACCCCAAATTTCATAACAAG+AGG 0.577194 8:-84177231 None:intergenic
GAGCGAGTAATAGTGATGGG+AGG 0.579676 8:-84174306 None:intergenic
ATGTCGCAGAAATTAACTCT+AGG 0.581649 8:+84174597 MsG0880047285.01.T01:CDS
CCCCAAATTTCATAACAAGA+GGG 0.582804 8:-84177230 None:intergenic
TTTATGACAAACATAAACCA+TGG 0.585195 8:-84177267 None:intergenic
GAAGGAGCGAGTAATAGTGA+TGG 0.585239 8:-84174310 None:intergenic
TGACGGTGATAAGAGGAAGA+TGG 0.587068 8:+84174566 MsG0880047285.01.T01:CDS
CCCAAATTTCATAACAAGAG+GGG 0.587441 8:-84177229 None:intergenic
GAATTGGAAAGAGACAAGTA+AGG 0.589380 8:-84174354 None:intergenic
GATTTAGACATTACCGGCGG+CGG 0.591983 8:+84174441 MsG0880047285.01.T01:CDS
TTATGACAAACATAAACCAT+GGG 0.603493 8:-84177266 None:intergenic
CGCCGGTAATGTCTAAATCG+GGG 0.604362 8:-84174437 None:intergenic
AGTAATAGTGATGGGAGGGT+GGG 0.611415 8:-84174301 None:intergenic
AATTGGAAAGAGACAAGTAA+GGG 0.611539 8:-84174353 None:intergenic
GGCGGCGGCGGTGATATCAA+AGG 0.624581 8:+84174456 MsG0880047285.01.T01:CDS
GTTCTCGTTTCAAGAAATCA+GGG 0.628947 8:+84177070 MsG0880047285.01.T01:CDS
TCGTTTCAAGAAATCAGGGA+AGG 0.630412 8:+84177074 MsG0880047285.01.T01:CDS
GCCGGTAATGTCTAAATCGG+GGG 0.634119 8:-84174436 None:intergenic
GTAATGGGCTTTCTGAAGAG+TGG 0.639725 8:+84175758 MsG0880047285.01.T01:CDS
AGTTCCAACAGCATATGCAT+AGG 0.642965 8:-84177387 None:intergenic
AATTCCATGCAAGTAACCAC+CGG 0.644415 8:-84177139 None:intergenic
AAAGGCGAGGAAGGATCTGA+CGG 0.645896 8:+84174549 MsG0880047285.01.T01:CDS
AGACGATAGTAACAAAGGCG+AGG 0.650186 8:+84174536 MsG0880047285.01.T01:CDS
CCCGATTTAGACATTACCGG+CGG 0.658939 8:+84174438 MsG0880047285.01.T01:CDS
GCATAGGTTCAAACACAACC+GGG 0.658942 8:-84177371 None:intergenic
GGAGGAGACGATAGTAACAA+AGG 0.659434 8:+84174531 MsG0880047285.01.T01:CDS
GGGTTGTAGGGCGAAGAGAG+AGG 0.659984 8:-84174275 None:intergenic
GTGTCGTTCATAATGACCGG+TGG 0.667012 8:+84177123 MsG0880047285.01.T01:CDS
GTCAATGGCAGAAACTGCAG+CGG 0.675091 8:+84174221 MsG0880047285.01.T01:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATTCCAAAATAAATTA+AGG - Chr8:84176843-84176862 None:intergenic 10.0%
!!! TTTAAAAAAATGGATTTTTA+TGG - Chr8:84176437-84176456 None:intergenic 10.0%
!!! TTTATTTTGGAATATTATTT+TGG + Chr8:84176846-84176865 MsG0880047285.01.T01:intron 10.0%
!! AAAAAATTATTTAACATGGA+TGG + Chr8:84176046-84176065 MsG0880047285.01.T01:intron 15.0%
!! CTACATAATGATATTTATTT+GGG + Chr8:84175718-84175737 MsG0880047285.01.T01:intron 15.0%
!! GGAAAAAAAATTATTTAACA+TGG + Chr8:84176042-84176061 MsG0880047285.01.T01:intron 15.0%
!! TCTACATAATGATATTTATT+TGG + Chr8:84175717-84175736 MsG0880047285.01.T01:intron 15.0%
!!! AAAATCTATTTTTTTCAACA+AGG - Chr8:84176492-84176511 None:intergenic 15.0%
!!! AGCTCATTTTTTTAAAAAAA+TGG - Chr8:84176447-84176466 None:intergenic 15.0%
!!! AGTTTTTTATTCATACTTTA+AGG + Chr8:84176234-84176253 MsG0880047285.01.T01:intron 15.0%
!! AATAATCCAAGATTAATATG+TGG + Chr8:84174851-84174870 MsG0880047285.01.T01:intron 20.0%
!! ATAAACTGGAATAAATTGTA+TGG + Chr8:84175407-84175426 MsG0880047285.01.T01:intron 20.0%
!! ATAGATAAGTGTTTATAAGT+GGG - Chr8:84175249-84175268 None:intergenic 20.0%
!! GAAATAAAATCTCACAAAAA+CGG + Chr8:84175203-84175222 MsG0880047285.01.T01:intron 20.0%
!! GATATTTGACAACTTTAAAT+TGG + Chr8:84175523-84175542 MsG0880047285.01.T01:intron 20.0%
!! TTTAATCCACATATTAATCT+TGG - Chr8:84174860-84174879 None:intergenic 20.0%
!!! ATTCATACTTTAAGGTTTTA+TGG + Chr8:84176242-84176261 MsG0880047285.01.T01:intron 20.0%
!!! TAGACATTTGTTGTAAAATA+AGG + Chr8:84177292-84177311 MsG0880047285.01.T01:three_prime_UTR 20.0%
!!! TCATTTTTAAGTGTTTGTTT+AGG - Chr8:84176591-84176610 None:intergenic 20.0%
!!! TGAAAAAAATCTGAAACAAA+CGG + Chr8:84176649-84176668 MsG0880047285.01.T01:intron 20.0%
! AAATTCATAGATCAGTTTCT+AGG - Chr8:84174693-84174712 None:intergenic 25.0%
! AATTCATAGATCAGTTTCTA+GGG - Chr8:84174692-84174711 None:intergenic 25.0%
! AATTGTATGGAAATTCCATA+TGG + Chr8:84175420-84175439 MsG0880047285.01.T01:intron 25.0%
! ATGGTTTATGTTTGTCATAA+AGG + Chr8:84177269-84177288 MsG0880047285.01.T01:three_prime_UTR 25.0%
! ATTGTATGGAAATTCCATAT+GGG + Chr8:84175421-84175440 MsG0880047285.01.T01:intron 25.0%
! CATAGATAAGTGTTTATAAG+TGG - Chr8:84175250-84175269 None:intergenic 25.0%
! TAGATAAGTGTTTATAAGTG+GGG - Chr8:84175248-84175267 None:intergenic 25.0%
! TATGTTACAAATTGTTCAAC+TGG + Chr8:84176297-84176316 MsG0880047285.01.T01:intron 25.0%
! TCTTAAAGTCTTAAGAACAA+AGG + Chr8:84176000-84176019 MsG0880047285.01.T01:intron 25.0%
! TTATGACAAACATAAACCAT+GGG - Chr8:84177269-84177288 None:intergenic 25.0%
! TTTATGACAAACATAAACCA+TGG - Chr8:84177270-84177289 None:intergenic 25.0%
!! AGTTAGAATGGATAACATTT+TGG + Chr8:84174728-84174747 MsG0880047285.01.T01:intron 25.0%
!! GAAAAAAATCTGAAACAAAC+GGG + Chr8:84176650-84176669 MsG0880047285.01.T01:intron 25.0%
!! GAATAAACTCTTTTACTGTT+GGG + Chr8:84175947-84175966 MsG0880047285.01.T01:intron 25.0%
!! TGAATAAACTCTTTTACTGT+TGG + Chr8:84175946-84175965 MsG0880047285.01.T01:intron 25.0%
!!! AATGGATTTTTATGGATAGT+AGG - Chr8:84176429-84176448 None:intergenic 25.0%
!!! CATTTGTTGTAAAATAAGGA+TGG + Chr8:84177296-84177315 MsG0880047285.01.T01:three_prime_UTR 25.0%
!!! GATCATTTTTCCTGATTAAT+AGG + Chr8:84177018-84177037 MsG0880047285.01.T01:intron 25.0%
AAACATTAACACATGAGAGA+AGG - Chr8:84176998-84177017 None:intergenic 30.0%
AATATGAAGTGTAGAGTTCA+GGG - Chr8:84176200-84176219 None:intergenic 30.0%
AATTGGAAAGAGACAAGTAA+GGG - Chr8:84174356-84174375 None:intergenic 30.0%
ACAAATTGTTCAACTGGTTA+TGG + Chr8:84176303-84176322 MsG0880047285.01.T01:intron 30.0%
AGATAAGTGTTTATAAGTGG+GGG - Chr8:84175247-84175266 None:intergenic 30.0%
CAATGGAATGATGCATTATT+GGG - Chr8:84176676-84176695 None:intergenic 30.0%
GGAATTTCATATGTATCAGA+AGG + Chr8:84176021-84176040 MsG0880047285.01.T01:intron 30.0%
GTAAAAGAGTTTATTCAGAC+AGG - Chr8:84175943-84175962 None:intergenic 30.0%
TAATATGAAGTGTAGAGTTC+AGG - Chr8:84176201-84176220 None:intergenic 30.0%
TCGCACTAGAATGTAAATAA+CGG + Chr8:84177171-84177190 MsG0880047285.01.T01:exon 30.0%
TCTATGAATTTACCTTCAGT+TGG + Chr8:84174702-84174721 MsG0880047285.01.T01:intron 30.0%
TGTCAAGATATCTTCGTTAT+CGG + Chr8:84175911-84175930 MsG0880047285.01.T01:intron 30.0%
TTGTATTCAGCAAAGTTTAC+AGG - Chr8:84177208-84177227 None:intergenic 30.0%
! CTCGCTTCCTTAATTTATTT+TGG + Chr8:84176833-84176852 MsG0880047285.01.T01:intron 30.0%
! GGTAAATGTGAACTTTTGTT+TGG + Chr8:84177317-84177336 MsG0880047285.01.T01:three_prime_UTR 30.0%
! GTGAATTGTAAAGCATTCTT+TGG + Chr8:84176170-84176189 MsG0880047285.01.T01:intron 30.0%
!! ATTTATTTGGGTTTTGACAG+CGG + Chr8:84175730-84175749 MsG0880047285.01.T01:intron 30.0%
!! TTTTTCGATTCCATGAAACA+AGG + Chr8:84175119-84175138 MsG0880047285.01.T01:intron 30.0%
!!! AACATGTTTTGTTTGTGTTG+TGG + Chr8:84175373-84175392 MsG0880047285.01.T01:intron 30.0%
!!! ACATGTTTTGTTTGTGTTGT+GGG + Chr8:84175374-84175393 MsG0880047285.01.T01:intron 30.0%
!!! ATGTTGCTCTTTTTTATTCC+CGG + Chr8:84177353-84177372 MsG0880047285.01.T01:three_prime_UTR 30.0%
ACATAGCCATGTCTAAATTC+TGG + Chr8:84176134-84176153 MsG0880047285.01.T01:intron 35.0%
ACCCCAAATTTCATAACAAG+AGG - Chr8:84177234-84177253 None:intergenic 35.0%
AGACTCTTTAACAGATAGTG+AGG + Chr8:84175289-84175308 MsG0880047285.01.T01:intron 35.0%
AGCAGATATGCCTATTAATC+AGG - Chr8:84177031-84177050 None:intergenic 35.0%
AGTGCTGCAATATTATATGG+AGG - Chr8:84175014-84175033 None:intergenic 35.0%
ATATGAAGTGTAGAGTTCAG+GGG - Chr8:84176199-84176218 None:intergenic 35.0%
ATGTCGCAGAAATTAACTCT+AGG + Chr8:84174597-84174616 MsG0880047285.01.T01:CDS 35.0%
ATTCCATGAAACAAGGAGTA+AGG + Chr8:84175126-84175145 MsG0880047285.01.T01:intron 35.0%
CAATCTCCAGAATTTAGACA+TGG - Chr8:84176143-84176162 None:intergenic 35.0%
CATAATTCGTTTGATGCCTT+TGG - Chr8:84176281-84176300 None:intergenic 35.0%
CCAATAATGCATCATTCCAT+TGG + Chr8:84176674-84176693 MsG0880047285.01.T01:intron 35.0%
CCAATGGAATGATGCATTAT+TGG - Chr8:84176677-84176696 None:intergenic 35.0%
CCCAAATTTCATAACAAGAG+GGG - Chr8:84177232-84177251 None:intergenic 35.0%
CCCCAAATTTCATAACAAGA+GGG - Chr8:84177233-84177252 None:intergenic 35.0%
CGCATACTCTTATGAGTTTA+CGG + Chr8:84176874-84176893 MsG0880047285.01.T01:intron 35.0%
GAATTGGAAAGAGACAAGTA+AGG - Chr8:84174357-84174376 None:intergenic 35.0%
GAGAAGACTGATACAACTAT+TGG - Chr8:84174971-84174990 None:intergenic 35.0%
GATGTCAAATATGTTTGTGC+AGG + Chr8:84175454-84175473 MsG0880047285.01.T01:intron 35.0%
GTTCTCGTTTCAAGAAATCA+GGG + Chr8:84177070-84177089 MsG0880047285.01.T01:CDS 35.0%
TGGGGGAAATCAAAATAAAC+TGG + Chr8:84175393-84175412 MsG0880047285.01.T01:intron 35.0%
TTCCATGAAACAAGGAGTAA+GGG + Chr8:84175127-84175146 MsG0880047285.01.T01:intron 35.0%
! ATCAATTCTAGTTGCTCACA+AGG - Chr8:84176944-84176963 None:intergenic 35.0%
! CCCCTCTTGTTATGAAATTT+GGG + Chr8:84177229-84177248 MsG0880047285.01.T01:three_prime_UTR 35.0%
! CCCTCTTGTTATGAAATTTG+GGG + Chr8:84177230-84177249 MsG0880047285.01.T01:three_prime_UTR 35.0%
! CCTGATAGCTTTTCATTCTA+GGG + Chr8:84176525-84176544 MsG0880047285.01.T01:intron 35.0%
! GCCATAAATTTTAGACAGTG+GGG + Chr8:84175063-84175082 MsG0880047285.01.T01:intron 35.0%
! GGCCATAAATTTTAGACAGT+GGG + Chr8:84175062-84175081 MsG0880047285.01.T01:intron 35.0%
! TCACTGGAAGAAGATTCTTT+TGG - Chr8:84174180-84174199 None:intergenic 35.0%
! TCCCCACTGTCTAAAATTTA+TGG - Chr8:84175067-84175086 None:intergenic 35.0%
! TCCCCTCTTGTTATGAAATT+TGG + Chr8:84177228-84177247 MsG0880047285.01.T01:three_prime_UTR 35.0%
! TCCTGATAGCTTTTCATTCT+AGG + Chr8:84176524-84176543 MsG0880047285.01.T01:intron 35.0%
!! TTTATTTGGGTTTTGACAGC+GGG + Chr8:84175731-84175750 MsG0880047285.01.T01:intron 35.0%
!!! ATGTTTTGTTTGTGTTGTGG+GGG + Chr8:84175376-84175395 MsG0880047285.01.T01:intron 35.0%
!!! CATGTTTTGTTTGTGTTGTG+GGG + Chr8:84175375-84175394 MsG0880047285.01.T01:intron 35.0%
!!! TAGGTCAAATTGACTGGTTT+TGG - Chr8:84174412-84174431 None:intergenic 35.0%
AAATTCCATATGGGTGGTAG+GGG + Chr8:84175430-84175449 MsG0880047285.01.T01:intron 40.0%
AAGGAGCGAGTAATAGTGAT+GGG - Chr8:84174312-84174331 None:intergenic 40.0%
AATTCCATGCAAGTAACCAC+CGG - Chr8:84177142-84177161 None:intergenic 40.0%
ACTGGTTATGGAAGAGACAA+TGG + Chr8:84176315-84176334 MsG0880047285.01.T01:intron 40.0%
AGAAAGAGATGATCGTAGGT+GGG + Chr8:84175176-84175195 MsG0880047285.01.T01:intron 40.0%
AGAGACAAGTAAGGGAAAGA+AGG - Chr8:84174348-84174367 None:intergenic 40.0%
AGAGAGAAAGAGATGATCGT+AGG + Chr8:84175172-84175191 MsG0880047285.01.T01:intron 40.0%
AGTTCCAACAGCATATGCAT+AGG - Chr8:84177390-84177409 None:intergenic 40.0%
ATGCATATGCTGTTGGAACT+TGG + Chr8:84177390-84177409 MsG0880047285.01.T01:three_prime_UTR 40.0%
ATTCTAACTCAGCCAACTGA+AGG - Chr8:84174717-84174736 None:intergenic 40.0%
CCCTAGAATGAAAAGCTATC+AGG - Chr8:84176528-84176547 None:intergenic 40.0%
CGTTTGATGCCTTTGGTAAA+TGG - Chr8:84176274-84176293 None:intergenic 40.0%
CTAGGTTATGCTATTCTCGT+TGG + Chr8:84174615-84174634 MsG0880047285.01.T01:CDS 40.0%
CTGGTTATGGAAGAGACAAT+GGG + Chr8:84176316-84176335 MsG0880047285.01.T01:intron 40.0%
CTTTAACAGATAGTGAGGCA+GGG + Chr8:84175294-84175313 MsG0880047285.01.T01:intron 40.0%
GAAATTCCATATGGGTGGTA+GGG + Chr8:84175429-84175448 MsG0880047285.01.T01:intron 40.0%
GAGCTAGAAAAATTCCACAC+TGG - Chr8:84176816-84176835 None:intergenic 40.0%
GGCAGTGCTGCAATATTATA+TGG - Chr8:84175017-84175036 None:intergenic 40.0%
GGTTCTCGTTTCAAGAAATC+AGG + Chr8:84177069-84177088 MsG0880047285.01.T01:CDS 40.0%
GTATGGAAATTCCATATGGG+TGG + Chr8:84175424-84175443 MsG0880047285.01.T01:intron 40.0%
TCAAATATCTGCCACGACAA+TGG - Chr8:84175512-84175531 None:intergenic 40.0%
TCAAATATGTTTGTGCAGGC+AGG + Chr8:84175458-84175477 MsG0880047285.01.T01:intron 40.0%
TCGTTTCAAGAAATCAGGGA+AGG + Chr8:84177074-84177093 MsG0880047285.01.T01:CDS 40.0%
TCTGTTAAAGAGTCTCACGT+CGG - Chr8:84175284-84175303 None:intergenic 40.0%
TCTTTAACAGATAGTGAGGC+AGG + Chr8:84175293-84175312 MsG0880047285.01.T01:intron 40.0%
TGAACCTATGCATATGCTGT+TGG + Chr8:84177383-84177402 MsG0880047285.01.T01:three_prime_UTR 40.0%
TGATGCCTTTGGTAAATGGT+AGG - Chr8:84176270-84176289 None:intergenic 40.0%
TGCATAGGTTCAAACACAAC+CGG - Chr8:84177375-84177394 None:intergenic 40.0%
TGGAACCTACCATTTACCAA+AGG + Chr8:84176262-84176281 MsG0880047285.01.T01:intron 40.0%
TGTATCAGTCTTCTCGATAG+TGG + Chr8:84174976-84174995 MsG0880047285.01.T01:intron 40.0%
TTCAGTTGGCTGAGTTAGAA+TGG + Chr8:84174716-84174735 MsG0880047285.01.T01:intron 40.0%
TTTCTGCCATTGACGAAAGA+AGG - Chr8:84174215-84174234 None:intergenic 40.0%
! AAAGGAAACGGAGACGATTT+TGG + Chr8:84174474-84174493 MsG0880047285.01.T01:CDS 40.0%
! AACCCTTACTCCTTGTTTCA+TGG - Chr8:84175132-84175151 None:intergenic 40.0%
! AATTTGTTTGCAGGGAGAGT+TGG + Chr8:84175087-84175106 MsG0880047285.01.T01:intron 40.0%
! AGCGAGTTGAGAATGTGAAT+TGG - Chr8:84174373-84174392 None:intergenic 40.0%
! AGTGGGGAAATTTGTTTGCA+GGG + Chr8:84175079-84175098 MsG0880047285.01.T01:intron 40.0%
! CTTGTGTCGTTCATAATGAC+CGG + Chr8:84177120-84177139 MsG0880047285.01.T01:CDS 40.0%
! GGGCCATAAATTTTAGACAG+TGG + Chr8:84175061-84175080 MsG0880047285.01.T01:intron 40.0%
!! TATGTTTTTACCGAGCTACC+CGG + Chr8:84175830-84175849 MsG0880047285.01.T01:CDS 40.0%
AAGGATCTGACGGTGATAAG+AGG + Chr8:84174559-84174578 MsG0880047285.01.T01:CDS 45.0%
AATATCTGCCACGACAATGG+CGG - Chr8:84175509-84175528 None:intergenic 45.0%
AATTCCATATGGGTGGTAGG+GGG + Chr8:84175431-84175450 MsG0880047285.01.T01:intron 45.0%
ACCTGTTCTTGCATCATCTG+TGG + Chr8:84175856-84175875 MsG0880047285.01.T01:CDS 45.0%
AGACGATAGTAACAAAGGCG+AGG + Chr8:84174536-84174555 MsG0880047285.01.T01:CDS 45.0%
AGAGCACGATTCTGTACCAA+TGG - Chr8:84176693-84176712 None:intergenic 45.0%
CACTGCCATCCTTCACTAAT+TGG + Chr8:84175030-84175049 MsG0880047285.01.T01:intron 45.0%
CATATCTGCTGCACTTCTTG+TGG + Chr8:84177041-84177060 MsG0880047285.01.T01:CDS 45.0%
CCAGAACCTTCTTTCGTCAA+TGG + Chr8:84174206-84174225 MsG0880047285.01.T01:exon 45.0%
CCATTGACGAAAGAAGGTTC+TGG - Chr8:84174209-84174228 None:intergenic 45.0%
CCTGTTCTTGCATCATCTGT+GGG + Chr8:84175857-84175876 MsG0880047285.01.T01:CDS 45.0%
GAAATCAGGGAAGGTCTTTC+CGG + Chr8:84177083-84177102 MsG0880047285.01.T01:CDS 45.0%
GAAGGAGCGAGTAATAGTGA+TGG - Chr8:84174313-84174332 None:intergenic 45.0%
GACAAGTAAGGGAAAGAAGG+AGG - Chr8:84174345-84174364 None:intergenic 45.0%
GAGAAAGAGATGATCGTAGG+TGG + Chr8:84175175-84175194 MsG0880047285.01.T01:intron 45.0%
GATAGTAACAAAGGCGAGGA+AGG + Chr8:84174540-84174559 MsG0880047285.01.T01:CDS 45.0%
GCATAGGTTCAAACACAACC+GGG - Chr8:84177374-84177393 None:intergenic 45.0%
GGAAATTCCATATGGGTGGT+AGG + Chr8:84175428-84175447 MsG0880047285.01.T01:intron 45.0%
GGAGGAGACGATAGTAACAA+AGG + Chr8:84174531-84174550 MsG0880047285.01.T01:CDS 45.0%
GGCACTTAGGTCAAATTGAC+TGG - Chr8:84174418-84174437 None:intergenic 45.0%
GGCGGTGATATCAAAGGAAA+CGG + Chr8:84174462-84174481 MsG0880047285.01.T01:CDS 45.0%
GGTTATGCTATTCTCGTTGG+AGG + Chr8:84174618-84174637 MsG0880047285.01.T01:CDS 45.0%
TCTCACAAAAACGGCATGTG+AGG + Chr8:84175212-84175231 MsG0880047285.01.T01:intron 45.0%
TGACGGTGATAAGAGGAAGA+TGG + Chr8:84174566-84174585 MsG0880047285.01.T01:CDS 45.0%
TGATGCAAGAACAGGTCTTC+CGG - Chr8:84175852-84175871 None:intergenic 45.0%
TGCCATCCTTCACTAATTGG+CGG + Chr8:84175033-84175052 MsG0880047285.01.T01:intron 45.0%
TGGCTATGTTTCAGCCTTAG+CGG - Chr8:84176123-84176142 None:intergenic 45.0%
TGGTACAGAATCGTGCTCTT+TGG + Chr8:84176694-84176713 MsG0880047285.01.T01:intron 45.0%
! AGCGAGTAATAGTGATGGGA+GGG - Chr8:84174308-84174327 None:intergenic 45.0%
! AGTAATAGTGATGGGAGGGT+GGG - Chr8:84174304-84174323 None:intergenic 45.0%
! CAGTGGGGAAATTTGTTTGC+AGG + Chr8:84175078-84175097 MsG0880047285.01.T01:intron 45.0%
! TTTAGCACTGAAGTCCAGTG+TGG + Chr8:84176799-84176818 MsG0880047285.01.T01:intron 45.0%
!! GTAATGGGCTTTCTGAAGAG+TGG + Chr8:84175758-84175777 MsG0880047285.01.T01:CDS 45.0%
!!! AAGGTTCTGGTTTTGCTCAC+TGG - Chr8:84174196-84174215 None:intergenic 45.0%
AAAGGCGAGGAAGGATCTGA+CGG + Chr8:84174549-84174568 MsG0880047285.01.T01:CDS 50.0%
ACAAGTGACACAACACCTGC+CGG - Chr8:84177105-84177124 None:intergenic 50.0%
AGAAGGAGGAGAAGCGATGA+AGG - Chr8:84174331-84174350 None:intergenic 50.0%
AGCCACACACAAGGTTGTGT+GGG - Chr8:84175486-84175505 None:intergenic 50.0%
AGCTCAGCAGTGACTTACCA+AGG - Chr8:84175883-84175902 None:intergenic 50.0%
ATGACCGGTGGTTACTTGCA+TGG + Chr8:84177135-84177154 MsG0880047285.01.T01:CDS 50.0%
ATTCCATATGGGTGGTAGGG+GGG + Chr8:84175432-84175451 MsG0880047285.01.T01:intron 50.0%
CACCGCCAATTAGTGAAGGA+TGG - Chr8:84175038-84175057 None:intergenic 50.0%
CATCCTTCACTAATTGGCGG+TGG + Chr8:84175036-84175055 MsG0880047285.01.T01:intron 50.0%
CCCACAGATGATGCAAGAAC+AGG - Chr8:84175860-84175879 None:intergenic 50.0%
CCCGATTTAGACATTACCGG+CGG + Chr8:84174438-84174457 MsG0880047285.01.T01:CDS 50.0%
CCGCCGGTAATGTCTAAATC+GGG - Chr8:84174441-84174460 None:intergenic 50.0%
CGCCGGTAATGTCTAAATCG+GGG - Chr8:84174440-84174459 None:intergenic 50.0%
GATGCAAGAACAGGTCTTCC+GGG - Chr8:84175851-84175870 None:intergenic 50.0%
GATTTAGACATTACCGGCGG+CGG + Chr8:84174441-84174460 MsG0880047285.01.T01:CDS 50.0%
GCCCCCGATTTAGACATTAC+CGG + Chr8:84174435-84174454 MsG0880047285.01.T01:CDS 50.0%
GCCGCCGGTAATGTCTAAAT+CGG - Chr8:84174442-84174461 None:intergenic 50.0%
GCCGGTAATGTCTAAATCGG+GGG - Chr8:84174439-84174458 None:intergenic 50.0%
GCTGCACTTCTTGTGGTGAT+GGG + Chr8:84177048-84177067 MsG0880047285.01.T01:CDS 50.0%
GGCTATGTTTCAGCCTTAGC+GGG - Chr8:84176122-84176141 None:intergenic 50.0%
GTCAATGGCAGAAACTGCAG+CGG + Chr8:84174221-84174240 MsG0880047285.01.T01:exon 50.0%
TCTTGAGTTTCTGCCCGCTA+AGG + Chr8:84176106-84176125 MsG0880047285.01.T01:intron 50.0%
TGCTGCACTTCTTGTGGTGA+TGG + Chr8:84177047-84177066 MsG0880047285.01.T01:CDS 50.0%
TTCACTAATTGGCGGTGGCA+GGG + Chr8:84175041-84175060 MsG0880047285.01.T01:intron 50.0%
TTGACAGCGGGTGGTGTAAT+GGG + Chr8:84175743-84175762 MsG0880047285.01.T01:intron 50.0%
TTTGACAGCGGGTGGTGTAA+TGG + Chr8:84175742-84175761 MsG0880047285.01.T01:intron 50.0%
! GAGCGAGTAATAGTGATGGG+AGG - Chr8:84174309-84174328 None:intergenic 50.0%
! GAGTAATAGTGATGGGAGGG+TGG - Chr8:84174305-84174324 None:intergenic 50.0%
! GCAGAAACTGCAGCGGTTTT+CGG + Chr8:84174228-84174247 MsG0880047285.01.T01:CDS 50.0%
! GGAAACGGAGACGATTTTGG+CGG + Chr8:84174477-84174496 MsG0880047285.01.T01:CDS 50.0%
! GTGTCGTTCATAATGACCGG+TGG + Chr8:84177123-84177142 MsG0880047285.01.T01:CDS 50.0%
!! ATTTGGGTTTTGACAGCGGG+TGG + Chr8:84175734-84175753 MsG0880047285.01.T01:intron 50.0%
!! GAGGGAAGGAAGTGTTGAAC+TGG - Chr8:84174259-84174278 None:intergenic 50.0%
!! TGGCAGCCAGAAGTCACTTT+TGG + Chr8:84175778-84175797 MsG0880047285.01.T01:CDS 50.0%
!! TGTCTAAATCGGGGGCACTT+AGG - Chr8:84174431-84174450 None:intergenic 50.0%
!!! AGCCAGAAGTCACTTTTGGC+TGG + Chr8:84175782-84175801 MsG0880047285.01.T01:CDS 50.0%
!!! CAGAAGTCACTTTTGGCTGG+GGG + Chr8:84175785-84175804 MsG0880047285.01.T01:CDS 50.0%
!!! CCAGAAGTCACTTTTGGCTG+GGG + Chr8:84175784-84175803 MsG0880047285.01.T01:CDS 50.0%
!!! GCCAGAAGTCACTTTTGGCT+GGG + Chr8:84175783-84175802 MsG0880047285.01.T01:CDS 50.0%
AACAGGTCTTCCGGGTAGCT+CGG - Chr8:84175843-84175862 None:intergenic 55.0%
AGCCCACACAACCTTGTGTG+TGG + Chr8:84175481-84175500 MsG0880047285.01.T01:intron 55.0%
CCCCAGCCAAAAGTGACTTC+TGG - Chr8:84175787-84175806 None:intergenic 55.0%
CTGCCACCGCCAATTAGTGA+AGG - Chr8:84175042-84175061 None:intergenic 55.0%
CTTCACTAATTGGCGGTGGC+AGG + Chr8:84175040-84175059 MsG0880047285.01.T01:intron 55.0%
CTTGCATCATCTGTGGGCCT+TGG + Chr8:84175863-84175882 MsG0880047285.01.T01:CDS 55.0%
GAGCCACACACAAGGTTGTG+TGG - Chr8:84175487-84175506 None:intergenic 55.0%
GGGTTTGTGCTGTAGACCCA+TGG + Chr8:84177250-84177269 MsG0880047285.01.T01:three_prime_UTR 55.0%
GGTTGTAGGGCGAAGAGAGA+GGG - Chr8:84174277-84174296 None:intergenic 55.0%
! TAGTGATGGGAGGGTGGGAT+CGG - Chr8:84174299-84174318 None:intergenic 55.0%
!! AACGGAGACGATTTTGGCGG+AGG + Chr8:84174480-84174499 MsG0880047285.01.T01:CDS 55.0%
CATCCCCCCTACCACCCATA+TGG - Chr8:84175438-84175457 None:intergenic 60.0%
GGGTTGTAGGGCGAAGAGAG+AGG - Chr8:84174278-84174297 None:intergenic 60.0%
GTAGGGCGAAGAGAGAGGGA+AGG - Chr8:84174273-84174292 None:intergenic 60.0%
GTTTGCAGGGAGAGTTGGCG+TGG + Chr8:84175092-84175111 MsG0880047285.01.T01:intron 60.0%
TCAGGGAAGGTCTTTCCGGC+AGG + Chr8:84177087-84177106 MsG0880047285.01.T01:CDS 60.0%
TTAGACATTACCGGCGGCGG+CGG + Chr8:84174444-84174463 MsG0880047285.01.T01:CDS 60.0%
TTTGATATCACCGCCGCCGC+CGG - Chr8:84174457-84174476 None:intergenic 60.0%
! AGTGATGGGAGGGTGGGATC+GGG - Chr8:84174298-84174317 None:intergenic 60.0%
! CAATGGCGGAGCCACACACA+AGG - Chr8:84175495-84175514 None:intergenic 60.0%
! GAGGGTGGGATCGGGTTGTA+GGG - Chr8:84174290-84174309 None:intergenic 60.0%
!! GACGATTTTGGCGGAGGAGG+TGG + Chr8:84174486-84174505 MsG0880047285.01.T01:CDS 60.0%
!! GATTTTGGCGGAGGAGGTGG+TGG + Chr8:84174489-84174508 MsG0880047285.01.T01:CDS 60.0%
!! GGAGACGATTTTGGCGGAGG+AGG + Chr8:84174483-84174502 MsG0880047285.01.T01:CDS 60.0%
GGCGGCGGCGGTGATATCAA+AGG + Chr8:84174456-84174475 MsG0880047285.01.T01:CDS 65.0%
GTGTGGCTCCGCCATTGTCG+TGG + Chr8:84175498-84175517 MsG0880047285.01.T01:intron 65.0%
! GGAGGGTGGGATCGGGTTGT+AGG - Chr8:84174291-84174310 None:intergenic 65.0%
! GGTGGTGGTGAAGGAGGAGG+CGG + Chr8:84174510-84174529 MsG0880047285.01.T01:CDS 65.0%
! TTTGGCGGAGGAGGTGGTGG+TGG + Chr8:84174492-84174511 MsG0880047285.01.T01:CDS 65.0%
!! GGAGGTGGTGGTGGTGGTGA+AGG + Chr8:84174501-84174520 MsG0880047285.01.T01:CDS 65.0%
!! GGTGGTGGTGGTGAAGGAGG+AGG + Chr8:84174507-84174526 MsG0880047285.01.T01:CDS 65.0%
!! GGTGGTGGTGGTGGTGAAGG+AGG + Chr8:84174504-84174523 MsG0880047285.01.T01:CDS 65.0%
GGTGGTGAAGGAGGAGGCGG+AGG + Chr8:84174513-84174532 MsG0880047285.01.T01:CDS 70.0%
!! GGCGGAGGAGGTGGTGGTGG+TGG + Chr8:84174495-84174514 MsG0880047285.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr8 gene 84174171 84177441 84174171 ID=MsG0880047285.01;Name=MsG0880047285.01
Chr8 mRNA 84174171 84177441 84174171 ID=MsG0880047285.01.T01;Parent=MsG0880047285.01;Name=MsG0880047285.01.T01;_AED=0.47;_eAED=0.47;_QI=54|1|1|1|1|1|3|262|229
Chr8 exon 84174171 84174639 84174171 ID=MsG0880047285.01.T01:exon:20938;Parent=MsG0880047285.01.T01
Chr8 exon 84175750 84175884 84175750 ID=MsG0880047285.01.T01:exon:20939;Parent=MsG0880047285.01.T01
Chr8 exon 84177040 84177441 84177040 ID=MsG0880047285.01.T01:exon:20940;Parent=MsG0880047285.01.T01
Chr8 five_prime_UTR 84174171 84174224 84174171 ID=MsG0880047285.01.T01:five_prime_utr;Parent=MsG0880047285.01.T01
Chr8 CDS 84174225 84174639 84174225 ID=MsG0880047285.01.T01:cds;Parent=MsG0880047285.01.T01
Chr8 CDS 84175750 84175884 84175750 ID=MsG0880047285.01.T01:cds;Parent=MsG0880047285.01.T01
Chr8 CDS 84177040 84177179 84177040 ID=MsG0880047285.01.T01:cds;Parent=MsG0880047285.01.T01
Chr8 three_prime_UTR 84177180 84177441 84177180 ID=MsG0880047285.01.T01:three_prime_utr;Parent=MsG0880047285.01.T01
Gene Sequence

>MsG0880047285.01.T01

ATGGCAGAAACTGCAGCGGTTTTCGGTGTTTCCAGTTCAACACTTCCTTCCCTCTCTCTTCGCCCTACAACCCGATCCCACCCTCCCATCACTATTACTCGCTCCTTCATCGCTTCTCCTCCTTCTTTCCCTTACTTGTCTCTTTCCAATTCACATTCTCAACTCGCTGTTGTTTCTTCTGATTCCAAAACCAGTCAATTTGACCTAAGTGCCCCCGATTTAGACATTACCGGCGGCGGCGGTGATATCAAAGGAAACGGAGACGATTTTGGCGGAGGAGGTGGTGGTGGTGGTGAAGGAGGAGGCGGAGGAGACGATAGTAACAAAGGCGAGGAAGGATCTGACGGTGATAAGAGGAAGATGGCTTTGTCAATGTCGCAGAAATTAACTCTAGGTTATGCTATTCTCGTTGGAGCGGGTGGTGTAATGGGCTTTCTGAAGAGTGGCAGCCAGAAGTCACTTTTGGCTGGGGGTTTGTCTTCTGCACTGCTGTTTTATGTTTTTACCGAGCTACCCGGAAGACCTGTTCTTGCATCATCTGTGGGCCTTGGCATATCTGCTGCACTTCTTGTGGTGATGGGTTCTCGTTTCAAGAAATCAGGGAAGGTCTTTCCGGCAGGTGTTGTGTCACTTGTGTCGTTCATAATGACCGGTGGTTACTTGCATGGAATTATGCGTAGTTCGCACTAG

Protein sequence

>MsG0880047285.01.T01

MAETAAVFGVSSSTLPSLSLRPTTRSHPPITITRSFIASPPSFPYLSLSNSHSQLAVVSSDSKTSQFDLSAPDLDITGGGGDIKGNGDDFGGGGGGGGEGGGGGDDSNKGEEGSDGDKRKMALSMSQKLTLGYAILVGAGGVMGFLKSGSQKSLLAGGLSSALLFYVFTELPGRPVLASSVGLGISAALLVVMGSRFKKSGKVFPAGVVSLVSFIMTGGYLHGIMRSSH*