Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024491.01.T01 | XP_003611263.2 | 84.488 | 303 | 11 | 2 | 1 | 267 | 1 | 303 | 2.47E-179 | 505 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024491.01.T01 | A2AIL4 | 34.752 | 282 | 146 | 4 | 16 | 267 | 60 | 333 | 5.02E-50 | 170 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024491.01.T01 | G7KG93 | 84.488 | 303 | 11 | 2 | 1 | 267 | 1 | 303 | 1.18e-179 | 505 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080049027.01 | MsG0580024491.01 | 0.806935 | 6.460007e-50 | 3.551378e-47 |
| MsG0180000151.01 | MsG0580024491.01 | -0.868565 | 5.940058e-66 | 2.158781e-62 |
| MsG0380012331.01 | MsG0580024491.01 | -0.802868 | 4.573786e-49 | 2.265166e-46 |
| MsG0380014727.01 | MsG0580024491.01 | -0.804956 | 1.684274e-49 | 8.801504e-47 |
| MsG0380014750.01 | MsG0580024491.01 | -0.823195 | 1.578358e-53 | 1.349734e-50 |
| MsG0480022535.01 | MsG0580024491.01 | -0.849113 | 3.982775e-60 | 7.472188e-57 |
| MsG0480023887.01 | MsG0580024491.01 | 0.807019 | 6.201771e-50 | 3.416826e-47 |
| MsG0580024491.01 | MsG0580024597.01 | -0.823688 | 1.210425e-53 | 1.049756e-50 |
| MsG0580024491.01 | MsG0680032460.01 | 0.809128 | 2.204797e-50 | 1.283891e-47 |
| MsG0580024491.01 | MsG0680032516.01 | -0.814642 | 1.388803e-51 | 9.370313e-49 |
| MsG0580024491.01 | MsG0680035618.01 | -0.815656 | 8.267242e-52 | 5.734249e-49 |
| MsG0580024491.01 | MsG0780040794.01 | -0.821667 | 3.574806e-53 | 2.927072e-50 |
| MsG0580024491.01 | MsG0780041737.01 | 0.807754 | 4.331945e-50 | 2.432724e-47 |
| MsG0580024491.01 | MsG0880042794.01 | -0.812949 | 3.277242e-51 | 2.111878e-48 |
| MsG0580024491.01 | MsG0880044315.01 | -0.803195 | 3.914973e-49 | 1.955137e-46 |
| MsG0580024491.01 | MsG0880045544.01 | -0.848392 | 6.311754e-60 | 1.156584e-56 |
| MsG0580024491.01 | MsG0880046880.01 | -0.825736 | 3.983683e-54 | 3.662132e-51 |
| MsG0380015215.01 | MsG0580024491.01 | 0.841821 | 3.765174e-58 | 5.598833e-55 |
| MsG0380015810.01 | MsG0580024491.01 | -0.840615 | 7.814856e-58 | 1.119247e-54 |
| MsG0480018345.01 | MsG0580024491.01 | -0.817971 | 2.500666e-52 | 1.847817e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024491.01.T01 | MTR_5g012060 | 84.488 | 303 | 11 | 2 | 1 | 267 | 1 | 303 | 0.0 | 505 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024491.01.T01 | AT1G62730 | 69.675 | 277 | 73 | 3 | 1 | 267 | 1 | 276 | 1.14e-135 | 384 |
| MsG0580024491.01.T01 | AT1G62730 | 64.590 | 305 | 69 | 3 | 1 | 267 | 1 | 304 | 5.05e-135 | 383 |
Find 86 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAATTCTTCCATAGTTTC+TGG | 0.164945 | 5:-5521313 | None:intergenic |
| CAACCATGACTTACTAATTT+TGG | 0.169811 | 5:-5521236 | None:intergenic |
| TGGATGTTCAATTAATTTAT+TGG | 0.196351 | 5:-5521179 | None:intergenic |
| CTTACAAAAGGCACGGAAAT+TGG | 0.230251 | 5:+5521635 | MsG0580024491.01.T01:CDS |
| ATTGGCAAACAATTTGTCTA+TGG | 0.294301 | 5:-5521161 | None:intergenic |
| TCCAGAAACTATGGAAGAAT+TGG | 0.324623 | 5:+5521312 | MsG0580024491.01.T01:CDS |
| AAGGCTTGCACGAGGGGTGC+TGG | 0.344303 | 5:+5521761 | MsG0580024491.01.T01:CDS |
| CTCTTCTTGCATCGTCGATC+CGG | 0.348391 | 5:-5521276 | None:intergenic |
| CCTGCCAGCTGTGCCTGCTC+AGG | 0.364956 | 5:+5521692 | MsG0580024491.01.T01:CDS |
| TTTAGCTGTTTCAACATTCA+AGG | 0.375145 | 5:-5521077 | None:intergenic |
| GGCACAGCTGGCAGGAGCAC+TGG | 0.386005 | 5:-5521684 | None:intergenic |
| TTCAACTCAAGTGGACTTCA+TGG | 0.391784 | 5:+5521808 | MsG0580024491.01.T01:CDS |
| TGTGCCTGCTCAGGTTCTCT+TGG | 0.392759 | 5:+5521701 | MsG0580024491.01.T01:CDS |
| CATAGTAGATACCGTGTTCT+CGG | 0.411266 | 5:-5521344 | None:intergenic |
| AGCACCCCTCGTGCAAGCCT+TGG | 0.419292 | 5:-5521759 | None:intergenic |
| GATCATGCAGCCTCACATAT+TGG | 0.419523 | 5:+5521412 | MsG0580024491.01.T01:CDS |
| AAGGCGCATAAGGCCAATCC+TGG | 0.426108 | 5:-5521122 | None:intergenic |
| AATGCAGCTTTCCGCATAGA+TGG | 0.432684 | 5:-5521043 | None:intergenic |
| CACCGACATTCCAGAAACTA+TGG | 0.432903 | 5:+5521303 | MsG0580024491.01.T01:CDS |
| TGCTGGGAATACCACCTTTG+TGG | 0.435864 | 5:+5521778 | MsG0580024491.01.T01:CDS |
| CCTGAGCAGGCACAGCTGGC+AGG | 0.442970 | 5:-5521692 | None:intergenic |
| AGAACCTGAGCAGGCACAGC+TGG | 0.443395 | 5:-5521696 | None:intergenic |
| TCGCACTTGTTGTACGCAAT+GGG | 0.447959 | 5:-5520978 | None:intergenic |
| GTTCTGCATCTAGTAACTTA+AGG | 0.460780 | 5:+5520945 | MsG0580024491.01.T01:CDS |
| CAAAAGGCACGGAAATTGGC+TGG | 0.465990 | 5:+5521639 | MsG0580024491.01.T01:CDS |
| TCTTCTTGCATCGTCGATCC+GGG | 0.467160 | 5:-5521275 | None:intergenic |
| TCTCTTGGATTCCCTACGCC+GGG | 0.469407 | 5:+5521716 | MsG0580024491.01.T01:CDS |
| GCCACCACACAAGGCGCATA+AGG | 0.473025 | 5:-5521132 | None:intergenic |
| TCTCTGCAATCACACTTGAC+AGG | 0.474712 | 5:-5521213 | None:intergenic |
| AGGCTTGCACGAGGGGTGCT+GGG | 0.476721 | 5:+5521762 | MsG0580024491.01.T01:CDS |
| CTTGACAGGGCCAGCGCTGT+TGG | 0.479492 | 5:-5521199 | None:intergenic |
| ATCAAATTGCACCCGGCGTA+GGG | 0.494435 | 5:-5521727 | None:intergenic |
| GTTGCTTCAGATCCCAGGAT+TGG | 0.495782 | 5:+5521109 | MsG0580024491.01.T01:CDS |
| TTCGCACTTGTTGTACGCAA+TGG | 0.499355 | 5:-5520979 | None:intergenic |
| TTCTCTTGGATTCCCTACGC+CGG | 0.506279 | 5:+5521715 | MsG0580024491.01.T01:CDS |
| TGGATGTTGCTTCAGATCCC+AGG | 0.510117 | 5:+5521104 | MsG0580024491.01.T01:CDS |
| TTCCATAGTTTCTGGAATGT+CGG | 0.513075 | 5:-5521305 | None:intergenic |
| CGCAAGGATTTAATGAGTGG+TGG | 0.516421 | 5:+5520923 | None:intergenic |
| TGATCCAAGGCTTGCACGAG+GGG | 0.526320 | 5:+5521755 | MsG0580024491.01.T01:CDS |
| AGCCAATGCACACTTACAAA+AGG | 0.527197 | 5:+5521623 | MsG0580024491.01.T01:CDS |
| TATGCGCCTTGTGTGGTGGC+AGG | 0.528538 | 5:+5521135 | MsG0580024491.01.T01:CDS |
| TGGCTTCCTGCCACCACACA+AGG | 0.536207 | 5:-5521141 | None:intergenic |
| CATCAAATTGCACCCGGCGT+AGG | 0.548272 | 5:-5521728 | None:intergenic |
| GGCTGGGAGTGTGCCTGCTG+AGG | 0.550043 | 5:+5521656 | MsG0580024491.01.T01:CDS |
| AAGGTCAAGGAGAGAGATGG+TGG | 0.552616 | 5:+5521554 | MsG0580024491.01.T01:CDS |
| AGCACTGGAATAGCCTCAGC+AGG | 0.562374 | 5:-5521669 | None:intergenic |
| TGAAACGATCTGTTGAAGCC+CGG | 0.564950 | 5:+5521257 | MsG0580024491.01.T01:CDS |
| GAATCCAAGAGAACCTGAGC+AGG | 0.565134 | 5:-5521705 | None:intergenic |
| AATTTGATGTGTTTGATCCA+AGG | 0.570713 | 5:+5521742 | MsG0580024491.01.T01:CDS |
| GTGTGAGGCAGTTTATGAAA+TGG | 0.571413 | 5:+5521593 | MsG0580024491.01.T01:CDS |
| CTCTGCAATCACACTTGACA+GGG | 0.573273 | 5:-5521212 | None:intergenic |
| AGACCAAAATTAGTAAGTCA+TGG | 0.574427 | 5:+5521233 | MsG0580024491.01.T01:CDS |
| CTGTTTCAACATTCAAGGCA+CGG | 0.582336 | 5:-5521072 | None:intergenic |
| AATTGAACATCCAACAGCGC+TGG | 0.586583 | 5:+5521189 | MsG0580024491.01.T01:CDS |
| GCCTTATGCGCCTTGTGTGG+TGG | 0.587629 | 5:+5521131 | MsG0580024491.01.T01:CDS |
| ATCGTTAAACAGGAAGGTCA+AGG | 0.590180 | 5:+5521541 | MsG0580024491.01.T01:intron |
| TAACGCAAGGATTTAATGAG+TGG | 0.593914 | 5:+5520920 | None:intergenic |
| AAGTCCACTTGAGTTGAAGC+TGG | 0.593973 | 5:-5521803 | None:intergenic |
| TCAAGTGGACTTCATGGAGA+AGG | 0.595439 | 5:+5521814 | MsG0580024491.01.T01:CDS |
| TTCTCGCGAGGGTCTGTGTG+AGG | 0.600535 | 5:+5521578 | MsG0580024491.01.T01:CDS |
| AAAAGGCACGGAAATTGGCT+GGG | 0.603375 | 5:+5521640 | MsG0580024491.01.T01:CDS |
| TCACATATTGGCAAGGCTAG+TGG | 0.604755 | 5:+5521424 | MsG0580024491.01.T01:CDS |
| CAAACACATCAAATTGCACC+CGG | 0.606483 | 5:-5521734 | None:intergenic |
| AGGAAGGTCAAGGAGAGAGA+TGG | 0.608347 | 5:+5521551 | MsG0580024491.01.T01:intron |
| GGTACCAGCTTCAACTCAAG+TGG | 0.609461 | 5:+5521799 | MsG0580024491.01.T01:CDS |
| TTTGATCCAAGGCTTGCACG+AGG | 0.609726 | 5:+5521753 | MsG0580024491.01.T01:CDS |
| CATAGTTTCTGGAATGTCGG+TGG | 0.610747 | 5:-5521302 | None:intergenic |
| AGGCGCATAAGGCCAATCCT+GGG | 0.619021 | 5:-5521121 | None:intergenic |
| TGCAGCCTCACATATTGGCA+AGG | 0.620209 | 5:+5521417 | MsG0580024491.01.T01:CDS |
| AGAGATGGTGGATTCTCGCG+AGG | 0.622380 | 5:+5521566 | MsG0580024491.01.T01:CDS |
| TTGTACTTGACACTTCAAGC+TGG | 0.625478 | 5:+5521367 | MsG0580024491.01.T01:CDS |
| TTGATCCAAGGCTTGCACGA+GGG | 0.629176 | 5:+5521754 | MsG0580024491.01.T01:CDS |
| TACTTGACACTTCAAGCTGG+CGG | 0.631640 | 5:+5521370 | MsG0580024491.01.T01:CDS |
| ATGCACACTTACAAAAGGCA+CGG | 0.641522 | 5:+5521628 | MsG0580024491.01.T01:CDS |
| TGTTGAAACAGCTAAAGCGA+TGG | 0.649208 | 5:+5521084 | MsG0580024491.01.T01:CDS |
| GATCGACGATGCAAGAAGAG+AGG | 0.649326 | 5:+5521279 | MsG0580024491.01.T01:CDS |
| TAGATGGAGGTAATTCGAGA+AGG | 0.649396 | 5:-5521027 | None:intergenic |
| GGAGAAATATGCCGAGAACA+CGG | 0.651307 | 5:+5521333 | MsG0580024491.01.T01:CDS |
| CGAGAAGGCAGAGATAGTGA+TGG | 0.655909 | 5:-5521012 | None:intergenic |
| GAGATGGTGGATTCTCGCGA+GGG | 0.657211 | 5:+5521567 | MsG0580024491.01.T01:CDS |
| GCAGCTTTCCGCATAGATGG+AGG | 0.659881 | 5:-5521040 | None:intergenic |
| TTGGCCTTATGCGCCTTGTG+TGG | 0.661315 | 5:+5521128 | MsG0580024491.01.T01:CDS |
| ACTAGCCTTGCCAATATGTG+AGG | 0.668625 | 5:-5521422 | None:intergenic |
| TGAAGCTGGTACCACAAAGG+TGG | 0.671108 | 5:-5521789 | None:intergenic |
| AGTTGAAGCTGGTACCACAA+AGG | 0.678191 | 5:-5521792 | None:intergenic |
| TCGAATTACCTCCATCTATG+CGG | 0.683768 | 5:+5521032 | MsG0580024491.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGGATGTTCAATTAATTTAT+TGG | - | Chr5:5521182-5521201 | None:intergenic | 20.0% |
| ! | TTGGAATGTAAGAAAAATGT+CGG | - | Chr5:5521495-5521514 | None:intergenic | 25.0% |
| !! | ACATTTTTCTTACATTCCAA+GGG | + | Chr5:5521495-5521514 | MsG0580024491.01.T01:intron | 25.0% |
| AATTTGATGTGTTTGATCCA+AGG | + | Chr5:5521742-5521761 | MsG0580024491.01.T01:CDS | 30.0% | |
| AGACCAAAATTAGTAAGTCA+TGG | + | Chr5:5521233-5521252 | MsG0580024491.01.T01:CDS | 30.0% | |
| ATTGGCAAACAATTTGTCTA+TGG | - | Chr5:5521164-5521183 | None:intergenic | 30.0% | |
| ! | CAACCATGACTTACTAATTT+TGG | - | Chr5:5521239-5521258 | None:intergenic | 30.0% |
| ! | GACATTTTTCTTACATTCCA+AGG | + | Chr5:5521494-5521513 | MsG0580024491.01.T01:intron | 30.0% |
| ! | TTTAGCTGTTTCAACATTCA+AGG | - | Chr5:5521080-5521099 | None:intergenic | 30.0% |
| GTTCTGCATCTAGTAACTTA+AGG | + | Chr5:5520945-5520964 | MsG0580024491.01.T01:CDS | 35.0% | |
| TCCAATTCTTCCATAGTTTC+TGG | - | Chr5:5521316-5521335 | None:intergenic | 35.0% | |
| TCCAGAAACTATGGAAGAAT+TGG | + | Chr5:5521312-5521331 | MsG0580024491.01.T01:CDS | 35.0% | |
| ! | TTTAACGATTAGCCCATGTT+TGG | - | Chr5:5521530-5521549 | None:intergenic | 35.0% |
| !! | TTCCATAGTTTCTGGAATGT+CGG | - | Chr5:5521308-5521327 | None:intergenic | 35.0% |
| AGCCAATGCACACTTACAAA+AGG | + | Chr5:5521623-5521642 | MsG0580024491.01.T01:CDS | 40.0% | |
| ATCGTTAAACAGGAAGGTCA+AGG | + | Chr5:5521541-5521560 | MsG0580024491.01.T01:intron | 40.0% | |
| ATGCACACTTACAAAAGGCA+CGG | + | Chr5:5521628-5521647 | MsG0580024491.01.T01:CDS | 40.0% | |
| CAAACACATCAAATTGCACC+CGG | - | Chr5:5521737-5521756 | None:intergenic | 40.0% | |
| CATAGTAGATACCGTGTTCT+CGG | - | Chr5:5521347-5521366 | None:intergenic | 40.0% | |
| CATGATAAGGCAGCGATTTA+AGG | - | Chr5:5521462-5521481 | None:intergenic | 40.0% | |
| CTGTTTCAACATTCAAGGCA+CGG | - | Chr5:5521075-5521094 | None:intergenic | 40.0% | |
| GTGTGAGGCAGTTTATGAAA+TGG | + | Chr5:5521593-5521612 | MsG0580024491.01.T01:CDS | 40.0% | |
| TAGATGGAGGTAATTCGAGA+AGG | - | Chr5:5521030-5521049 | None:intergenic | 40.0% | |
| TCGAATTACCTCCATCTATG+CGG | + | Chr5:5521032-5521051 | MsG0580024491.01.T01:CDS | 40.0% | |
| TGTTGAAACAGCTAAAGCGA+TGG | + | Chr5:5521084-5521103 | MsG0580024491.01.T01:CDS | 40.0% | |
| TTGTACTTGACACTTCAAGC+TGG | + | Chr5:5521367-5521386 | MsG0580024491.01.T01:CDS | 40.0% | |
| ! | ACATGGGCTAATCGTTAAAC+AGG | + | Chr5:5521531-5521550 | MsG0580024491.01.T01:intron | 40.0% |
| ! | CTTACAAAAGGCACGGAAAT+TGG | + | Chr5:5521635-5521654 | MsG0580024491.01.T01:CDS | 40.0% |
| ! | TGCCTTTTGTAAGTGTGCAT+TGG | - | Chr5:5521628-5521647 | None:intergenic | 40.0% |
| ! | TTCAACTCAAGTGGACTTCA+TGG | + | Chr5:5521808-5521827 | MsG0580024491.01.T01:CDS | 40.0% |
| AAATCGCTGCCTTATCATGC+TGG | + | Chr5:5521463-5521482 | MsG0580024491.01.T01:intron | 45.0% | |
| AATGCAGCTTTCCGCATAGA+TGG | - | Chr5:5521046-5521065 | None:intergenic | 45.0% | |
| AATTGAACATCCAACAGCGC+TGG | + | Chr5:5521189-5521208 | MsG0580024491.01.T01:CDS | 45.0% | |
| AGGGCAATAGCATCCAAACA+TGG | + | Chr5:5521514-5521533 | MsG0580024491.01.T01:intron | 45.0% | |
| AGTTGAAGCTGGTACCACAA+AGG | - | Chr5:5521795-5521814 | None:intergenic | 45.0% | |
| CACCGACATTCCAGAAACTA+TGG | + | Chr5:5521303-5521322 | MsG0580024491.01.T01:CDS | 45.0% | |
| CTCTGCAATCACACTTGACA+GGG | - | Chr5:5521215-5521234 | None:intergenic | 45.0% | |
| GATCATGCAGCCTCACATAT+TGG | + | Chr5:5521412-5521431 | MsG0580024491.01.T01:CDS | 45.0% | |
| GGAGAAATATGCCGAGAACA+CGG | + | Chr5:5521333-5521352 | MsG0580024491.01.T01:CDS | 45.0% | |
| GGGCAATAGCATCCAAACAT+GGG | + | Chr5:5521515-5521534 | MsG0580024491.01.T01:intron | 45.0% | |
| GGGCTAATCGTTAAACAGGA+AGG | + | Chr5:5521535-5521554 | MsG0580024491.01.T01:intron | 45.0% | |
| TACTTGACACTTCAAGCTGG+CGG | + | Chr5:5521370-5521389 | MsG0580024491.01.T01:CDS | 45.0% | |
| TCACATATTGGCAAGGCTAG+TGG | + | Chr5:5521424-5521443 | MsG0580024491.01.T01:CDS | 45.0% | |
| TCTCTGCAATCACACTTGAC+AGG | - | Chr5:5521216-5521235 | None:intergenic | 45.0% | |
| TGAAACGATCTGTTGAAGCC+CGG | + | Chr5:5521257-5521276 | MsG0580024491.01.T01:CDS | 45.0% | |
| TGTTTGGATGCTATTGCCCT+TGG | - | Chr5:5521514-5521533 | None:intergenic | 45.0% | |
| ! | AAAAGGCACGGAAATTGGCT+GGG | + | Chr5:5521640-5521659 | MsG0580024491.01.T01:CDS | 45.0% |
| ! | TCAAGTGGACTTCATGGAGA+AGG | + | Chr5:5521814-5521833 | MsG0580024491.01.T01:CDS | 45.0% |
| !! | AAGTCCACTTGAGTTGAAGC+TGG | - | Chr5:5521806-5521825 | None:intergenic | 45.0% |
| !! | ACTAGCCTTGCCAATATGTG+AGG | - | Chr5:5521425-5521444 | None:intergenic | 45.0% |
| !! | CATAGTTTCTGGAATGTCGG+TGG | - | Chr5:5521305-5521324 | None:intergenic | 45.0% |
| !! | TCGCACTTGTTGTACGCAAT+GGG | - | Chr5:5520981-5521000 | None:intergenic | 45.0% |
| !! | TTCGCACTTGTTGTACGCAA+TGG | - | Chr5:5520982-5521001 | None:intergenic | 45.0% |
| AAGGTCAAGGAGAGAGATGG+TGG | + | Chr5:5521554-5521573 | MsG0580024491.01.T01:CDS | 50.0% | |
| AGGAAGGTCAAGGAGAGAGA+TGG | + | Chr5:5521551-5521570 | MsG0580024491.01.T01:intron | 50.0% | |
| ATCAAATTGCACCCGGCGTA+GGG | - | Chr5:5521730-5521749 | None:intergenic | 50.0% | |
| CGAGAAGGCAGAGATAGTGA+TGG | - | Chr5:5521015-5521034 | None:intergenic | 50.0% | |
| CGGTTGTGACCAGCATGATA+AGG | - | Chr5:5521475-5521494 | None:intergenic | 50.0% | |
| CTCTTCTTGCATCGTCGATC+CGG | - | Chr5:5521279-5521298 | None:intergenic | 50.0% | |
| GAATCCAAGAGAACCTGAGC+AGG | - | Chr5:5521708-5521727 | None:intergenic | 50.0% | |
| GATCGACGATGCAAGAAGAG+AGG | + | Chr5:5521279-5521298 | MsG0580024491.01.T01:CDS | 50.0% | |
| GGTACCAGCTTCAACTCAAG+TGG | + | Chr5:5521799-5521818 | MsG0580024491.01.T01:CDS | 50.0% | |
| GTTGCTTCAGATCCCAGGAT+TGG | + | Chr5:5521109-5521128 | MsG0580024491.01.T01:CDS | 50.0% | |
| TCTTCTTGCATCGTCGATCC+GGG | - | Chr5:5521278-5521297 | None:intergenic | 50.0% | |
| TGAAGCTGGTACCACAAAGG+TGG | - | Chr5:5521792-5521811 | None:intergenic | 50.0% | |
| TGCAGCCTCACATATTGGCA+AGG | + | Chr5:5521417-5521436 | MsG0580024491.01.T01:CDS | 50.0% | |
| TGCTGGGAATACCACCTTTG+TGG | + | Chr5:5521778-5521797 | MsG0580024491.01.T01:CDS | 50.0% | |
| TTCTCTTGGATTCCCTACGC+CGG | + | Chr5:5521715-5521734 | MsG0580024491.01.T01:CDS | 50.0% | |
| TTGATCCAAGGCTTGCACGA+GGG | + | Chr5:5521754-5521773 | MsG0580024491.01.T01:CDS | 50.0% | |
| TTTGATCCAAGGCTTGCACG+AGG | + | Chr5:5521753-5521772 | MsG0580024491.01.T01:CDS | 50.0% | |
| ! | CAAAAGGCACGGAAATTGGC+TGG | + | Chr5:5521639-5521658 | MsG0580024491.01.T01:CDS | 50.0% |
| ! | TGGATGTTGCTTCAGATCCC+AGG | + | Chr5:5521104-5521123 | MsG0580024491.01.T01:CDS | 50.0% |
| AAGGCGCATAAGGCCAATCC+TGG | - | Chr5:5521125-5521144 | None:intergenic | 55.0% | |
| AGGCGCATAAGGCCAATCCT+GGG | - | Chr5:5521124-5521143 | None:intergenic | 55.0% | |
| CATCAAATTGCACCCGGCGT+AGG | - | Chr5:5521731-5521750 | None:intergenic | 55.0% | |
| GCAGCTTTCCGCATAGATGG+AGG | - | Chr5:5521043-5521062 | None:intergenic | 55.0% | |
| TCTCTTGGATTCCCTACGCC+GGG | + | Chr5:5521716-5521735 | MsG0580024491.01.T01:CDS | 55.0% | |
| TGATCCAAGGCTTGCACGAG+GGG | + | Chr5:5521755-5521774 | MsG0580024491.01.T01:CDS | 55.0% | |
| TGTGCCTGCTCAGGTTCTCT+TGG | + | Chr5:5521701-5521720 | MsG0580024491.01.T01:CDS | 55.0% | |
| ! | AGCACTGGAATAGCCTCAGC+AGG | - | Chr5:5521672-5521691 | None:intergenic | 55.0% |
| !! | AGAGATGGTGGATTCTCGCG+AGG | + | Chr5:5521566-5521585 | MsG0580024491.01.T01:CDS | 55.0% |
| !! | GAGATGGTGGATTCTCGCGA+GGG | + | Chr5:5521567-5521586 | MsG0580024491.01.T01:CDS | 55.0% |
| !! | TTGGCCTTATGCGCCTTGTG+TGG | + | Chr5:5521128-5521147 | MsG0580024491.01.T01:CDS | 55.0% |
| AGAACCTGAGCAGGCACAGC+TGG | - | Chr5:5521699-5521718 | None:intergenic | 60.0% | |
| GCCACCACACAAGGCGCATA+AGG | - | Chr5:5521135-5521154 | None:intergenic | 60.0% | |
| GCCTTATGCGCCTTGTGTGG+TGG | + | Chr5:5521131-5521150 | MsG0580024491.01.T01:CDS | 60.0% | |
| TATGCGCCTTGTGTGGTGGC+AGG | + | Chr5:5521135-5521154 | MsG0580024491.01.T01:CDS | 60.0% | |
| TGGCTTCCTGCCACCACACA+AGG | - | Chr5:5521144-5521163 | None:intergenic | 60.0% | |
| TTCTCGCGAGGGTCTGTGTG+AGG | + | Chr5:5521578-5521597 | MsG0580024491.01.T01:CDS | 60.0% | |
| AGCACCCCTCGTGCAAGCCT+TGG | - | Chr5:5521762-5521781 | None:intergenic | 65.0% | |
| CTTGACAGGGCCAGCGCTGT+TGG | - | Chr5:5521202-5521221 | None:intergenic | 65.0% | |
| ! | AAGGCTTGCACGAGGGGTGC+TGG | + | Chr5:5521761-5521780 | MsG0580024491.01.T01:CDS | 65.0% |
| !! | AGGCTTGCACGAGGGGTGCT+GGG | + | Chr5:5521762-5521781 | MsG0580024491.01.T01:CDS | 65.0% |
| CCTGAGCAGGCACAGCTGGC+AGG | - | Chr5:5521695-5521714 | None:intergenic | 70.0% | |
| CCTGCCAGCTGTGCCTGCTC+AGG | + | Chr5:5521692-5521711 | MsG0580024491.01.T01:CDS | 70.0% | |
| ! | GGCACAGCTGGCAGGAGCAC+TGG | - | Chr5:5521687-5521706 | None:intergenic | 70.0% |
| ! | GGCTGGGAGTGTGCCTGCTG+AGG | + | Chr5:5521656-5521675 | MsG0580024491.01.T01:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 5520935 | 5521845 | 5520935 | ID=MsG0580024491.01;Name=MsG0580024491.01 |
| Chr5 | mRNA | 5520935 | 5521845 | 5520935 | ID=MsG0580024491.01.T01;Parent=MsG0580024491.01;Name=MsG0580024491.01.T01;_AED=0.33;_eAED=0.34;_QI=0|0|0|1|1|1|2|0|267 |
| Chr5 | exon | 5520935 | 5521445 | 5520935 | ID=MsG0580024491.01.T01:exon:19082;Parent=MsG0580024491.01.T01 |
| Chr5 | exon | 5521553 | 5521845 | 5521553 | ID=MsG0580024491.01.T01:exon:19083;Parent=MsG0580024491.01.T01 |
| Chr5 | CDS | 5520935 | 5521445 | 5520935 | ID=MsG0580024491.01.T01:cds;Parent=MsG0580024491.01.T01 |
| Chr5 | CDS | 5521553 | 5521845 | 5521553 | ID=MsG0580024491.01.T01:cds;Parent=MsG0580024491.01.T01 |
| Gene Sequence |
| Protein sequence |
