AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023952.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023952.01.T01 MTR_8g105790 99.197 249 2 0 1 249 1 249 5.10e-179 491
MsG0480023952.01.T01 MTR_8g105810 86.800 250 32 1 1 249 1 250 1.72e-157 437
MsG0480023952.01.T01 MTR_7g076320 26.613 248 175 3 1 241 3 250 3.00e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023952.01.T01 AT2G01770 83.122 237 40 0 9 245 10 246 4.11e-144 403

Find 78 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGCCTCTGCAGCTGCTTA+TGG 0.219518 4:-91623309 MsG0480023952.01.T01:CDS
GCACTATACAATGCTCTTCT+TGG 0.231503 4:+91623531 None:intergenic
TTGATTGCTTTGCTTATCTT+TGG 0.233804 4:-91623402 MsG0480023952.01.T01:CDS
TTACGATACGAACCAGTTTC+TGG 0.248340 4:+91625053 None:intergenic
ATTGCTATTGCTTACGTATT+GGG 0.289589 4:-91623501 MsG0480023952.01.T01:CDS
GCTTTGGAAACTGCTCTAAT+TGG 0.299231 4:-91623336 MsG0480023952.01.T01:CDS
CTCTGCAGCTGCTTATGGTT+TGG 0.327872 4:-91623304 MsG0480023952.01.T01:CDS
TCACCGGCAACAAGCCTATC+AGG 0.353963 4:-91623362 MsG0480023952.01.T01:CDS
GGAATAGAGGCACATGAATA+TGG 0.366935 4:-91624926 MsG0480023952.01.T01:CDS
TGCTGAGGTGGCAGAAATAT+TGG 0.367269 4:-91624957 MsG0480023952.01.T01:CDS
GTTTCCAAAGCACTCCTGAT+AGG 0.367638 4:+91623348 None:intergenic
TTGGCATGGCAGGTTTGAGC+TGG 0.371854 4:-91623571 MsG0480023952.01.T01:intron
GCAGAAATATTGGCTGAGTA+TGG 0.383074 4:-91624947 MsG0480023952.01.T01:CDS
TACAATGCTCTTCTTGGATC+TGG 0.387148 4:+91623537 None:intergenic
GGCGGCGACTTCGGCGATGC+CGG 0.389084 4:+91625275 None:intergenic
GCCCTCGCCGCCGGTCTCTC+TGG 0.390424 4:-91625330 MsG0480023952.01.T01:CDS
CGCCGCCGGCGCCATCTCCA+TGG 0.394416 4:-91625259 MsG0480023952.01.T01:CDS
GGCTCTGTTTCTCAGGTTCA+AGG 0.398656 4:+91625445 None:intergenic
TTGAGAAGGCTCTGTTTCTC+AGG 0.409645 4:+91625438 None:intergenic
TGTGTTGTCGTGAAGGTATT+TGG 0.412813 4:-91625144 MsG0480023952.01.T01:intron
GGCGCCATCTCCATGGGTCT+CGG 0.413142 4:-91625252 MsG0480023952.01.T01:CDS
AGAACAGCCTCTGATGCATT+AGG 0.414520 4:+91623444 None:intergenic
GGCATCGCCGAAGTCGCCGC+CGG 0.418402 4:-91625273 MsG0480023952.01.T01:CDS
GATGGCGCCGGCGGCGACTT+CGG 0.423405 4:+91625266 None:intergenic
ATCGTTACAGTACCAGAAAC+TGG 0.426709 4:-91625065 MsG0480023952.01.T01:intron
AGACCGGCGGCGAGGGCGAA+AGG 0.430567 4:+91625336 None:intergenic
AATTGCTATTGCTTACGTAT+TGG 0.433881 4:-91623502 MsG0480023952.01.T01:CDS
ATTACAATAGAGAATTGAAA+AGG 0.434289 4:-91625100 MsG0480023952.01.T01:CDS
ACTCCTGATAGGCTTGTTGC+CGG 0.441410 4:+91623359 None:intergenic
GCTTATCTTTGGCTTTGTCA+AGG 0.444850 4:-91623391 MsG0480023952.01.T01:CDS
CTTATCTTTGGCTTTGTCAA+GGG 0.448135 4:-91623390 MsG0480023952.01.T01:CDS
TTTGTCAAGGGATGCTTCAC+CGG 0.449841 4:-91623378 MsG0480023952.01.T01:CDS
CAAGCCTATCAGGAGTGCTT+TGG 0.453512 4:-91623352 MsG0480023952.01.T01:CDS
GTTCCTTTCGCCCTCGCCGC+CGG 0.459488 4:-91625339 MsG0480023952.01.T01:CDS
AGCATTGGCGCCAGAGAGAC+CGG 0.471916 4:+91625320 None:intergenic
GCCAGAGAGACCGGCGGCGA+GGG 0.479185 4:+91625329 None:intergenic
TCTTCCATCGTTCTCACTGC+CGG 0.485751 4:-91625294 MsG0480023952.01.T01:CDS
GGCTGTTCTTGTTTCAGTGG+TGG 0.490681 4:-91623430 MsG0480023952.01.T01:CDS
ATCATCATCGGCGTTTCTGA+TGG 0.491623 4:-91625369 MsG0480023952.01.T01:CDS
AGCTGCTTATGGTTTGGCAA+AGG 0.497745 4:-91623298 MsG0480023952.01.T01:CDS
CTTGTTCAAATGGCTGGTAA+TGG 0.501587 4:-91625486 None:intergenic
TGAAGGTATTTGGCAGCAAA+AGG 0.504633 4:-91625134 MsG0480023952.01.T01:intron
AGAGGCTGTTCTTGTTTCAG+TGG 0.506618 4:-91623433 MsG0480023952.01.T01:CDS
GCCGCCGGCGCCATCTCCAT+GGG 0.507839 4:-91625258 MsG0480023952.01.T01:CDS
ATTGGCTGAGTATGGAATAG+AGG 0.509860 4:-91624939 MsG0480023952.01.T01:CDS
TGGCATGGCAGGTTTGAGCT+GGG 0.517647 4:-91623570 MsG0480023952.01.T01:intron
ACCCATGGAGATGGCGCCGG+CGG 0.521241 4:+91625257 None:intergenic
GCATTAGGAATGAACATGTA+AGG 0.527058 4:+91623459 None:intergenic
CATACACTTGTTCAAATGGC+TGG 0.531327 4:-91625492 None:intergenic
AACGATGGAAGAAGTAGCAT+TGG 0.541787 4:+91625305 None:intergenic
TTACAATAGAGAATTGAAAA+GGG 0.552550 4:-91625099 MsG0480023952.01.T01:CDS
TTTCTCAGAGCATTCACCAC+AGG 0.554204 4:+91624902 None:intergenic
GGCGGCGAGGGCGAAAGGAA+CGG 0.558595 4:+91625341 None:intergenic
ATAAGCAGCTGCAGAGGCAA+TGG 0.561549 4:+91623311 None:intergenic
TTTCAGTGTGGCGATTGAGA+AGG 0.562660 4:+91625424 None:intergenic
CCCTCCGAGACCCATGGAGA+TGG 0.565170 4:+91625248 None:intergenic
CGCCAGAGAGACCGGCGGCG+AGG 0.570875 4:+91625328 None:intergenic
TATTTCAGAAGCTGCTGAGG+TGG 0.571673 4:-91624969 MsG0480023952.01.T01:intron
GCTATTGCTTACGTATTGGG+TGG 0.579839 4:-91623498 MsG0480023952.01.T01:CDS
GAGACCCATGGAGATGGCGC+CGG 0.581337 4:+91625254 None:intergenic
CCATCTCCATGGGTCTCGGA+GGG 0.588120 4:-91625248 MsG0480023952.01.T01:intron
TATTATTTCAGAAGCTGCTG+AGG 0.589707 4:-91624972 MsG0480023952.01.T01:intron
ACTGAAAAGCACTTCACCGC+CGG 0.593901 4:-91625408 MsG0480023952.01.T01:CDS
GATGTCACGGACGATCTCAC+CGG 0.594283 4:+91625389 None:intergenic
ATGAACATGTAAGGAATGAG+AGG 0.596128 4:+91623468 None:intergenic
AAAGAGCATGAAACTATGGA+TGG 0.598379 4:+91623271 None:intergenic
GTGTTACCCTCCGAGACCCA+TGG 0.602772 4:+91625242 None:intergenic
TGAGAAAGAATCCTCAAGCA+TGG 0.613689 4:-91624886 MsG0480023952.01.T01:CDS
GCCATCTCCATGGGTCTCGG+AGG 0.615331 4:-91625249 MsG0480023952.01.T01:CDS
CAAACCATAAGCAGCTGCAG+AGG 0.616863 4:+91623305 None:intergenic
GTTCATTCCTAATGCATCAG+AGG 0.624017 4:-91623451 MsG0480023952.01.T01:CDS
ATGAAATCAAGCCATGCTTG+AGG 0.632968 4:+91624875 None:intergenic
ATCGTCCGTGACATCATCAT+CGG 0.638810 4:-91625381 MsG0480023952.01.T01:CDS
AAACGCCGATGATGATGTCA+CGG 0.645259 4:+91625376 None:intergenic
GTCACGGACGATCTCACCGG+CGG 0.688191 4:+91625392 None:intergenic
GGCACATGAATATGGACCTG+TGG 0.703794 4:-91624918 MsG0480023952.01.T01:CDS
ATTGGCGCCAGAGAGACCGG+CGG 0.726652 4:+91625323 None:intergenic
GATGCCGGCAGTGAGAACGA+TGG 0.747818 4:+91625290 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTAAAATAAGATTGATA+TGG - Chr4:91624802-91624821 MsG0480023952.01.T01:intron 10.0%
!!! AAATTTATAGAAAAAGTTTT+CGG + Chr4:91624292-91624311 None:intergenic 10.0%
!! GAACAAATTAATTAACAAAT+TGG - Chr4:91625163-91625182 MsG0480023952.01.T01:intron 15.0%
!! TATAAGTAAATAAATATCTC+TGG - Chr4:91624681-91624700 MsG0480023952.01.T01:intron 15.0%
!! TATGATAAAAATTGAAATTG+AGG + Chr4:91624402-91624421 None:intergenic 15.0%
!! TTCTTCATAGTATTAAAAAA+AGG + Chr4:91624888-91624907 None:intergenic 15.0%
!! AATTTGTGTGAAGATAAAAT+AGG - Chr4:91624359-91624378 MsG0480023952.01.T01:intron 20.0%
!! ATTACAATAGAGAATTGAAA+AGG - Chr4:91623661-91623680 MsG0480023952.01.T01:intron 20.0%
!! TAATTAACAAATTGGTTACT+TGG - Chr4:91625171-91625190 MsG0480023952.01.T01:intron 20.0%
!! TTACAATAGAGAATTGAAAA+GGG - Chr4:91623662-91623681 MsG0480023952.01.T01:intron 20.0%
!!! AAAGTAATTTGTCCAAAATT+TGG - Chr4:91623968-91623987 MsG0480023952.01.T01:intron 20.0%
!!! GAAATTAATTCACGTTTTTA+AGG + Chr4:91625102-91625121 None:intergenic 20.0%
!!! GTATTCTAGAAACAATAAAA+AGG + Chr4:91625073-91625092 None:intergenic 20.0%
!!! TACTTTAGAAATCAAATTAG+AGG - Chr4:91624827-91624846 MsG0480023952.01.T01:intron 20.0%
!!! TGGTTTGGAATAAAAAAAAA+TGG + Chr4:91624426-91624445 None:intergenic 20.0%
!!! TGTTTTGAAAAACGTTTTTT+AGG + Chr4:91624729-91624748 None:intergenic 20.0%
! AAGGTGCATGTATATAAAAT+TGG + Chr4:91625054-91625073 None:intergenic 25.0%
! ACGTGAATTAATTTCTACAA+TGG - Chr4:91625107-91625126 MsG0480023952.01.T01:CDS 25.0%
! GAAGATAAAATAGGTAAACA+AGG - Chr4:91624368-91624387 MsG0480023952.01.T01:intron 25.0%
! TAAATAAATATCTCTGGTCT+TGG - Chr4:91624687-91624706 MsG0480023952.01.T01:intron 25.0%
! TATATTCATCCACCTTTATA+TGG - Chr4:91624933-91624952 MsG0480023952.01.T01:CDS 25.0%
!! ATGAATATAAGTTGGATTCA+TGG + Chr4:91624922-91624941 None:intergenic 25.0%
!! GATGTTAATTTAAAGTTGTG+TGG + Chr4:91624243-91624262 None:intergenic 25.0%
!!! ACATTGATTCTACAATACAA+TGG + Chr4:91624446-91624465 None:intergenic 25.0%
!!! ATTTTTTTGTACAGCTAGTT+AGG - Chr4:91624610-91624629 MsG0480023952.01.T01:intron 25.0%
AAAGGTGGATGAATATAAGT+TGG + Chr4:91624930-91624949 None:intergenic 30.0%
AATTAGAGGTAGAGATTTAC+TGG - Chr4:91624841-91624860 MsG0480023952.01.T01:intron 30.0%
ATGAATAAATGATCATGTGC+AGG - Chr4:91624633-91624652 MsG0480023952.01.T01:intron 30.0%
ATGTAGAAACCATATAAAGG+TGG + Chr4:91624945-91624964 None:intergenic 30.0%
GATTCTACAATACAATGGTT+TGG + Chr4:91624441-91624460 None:intergenic 30.0%
GTTGAATGTTAGTTATATGC+TGG - Chr4:91624015-91624034 MsG0480023952.01.T01:intron 30.0%
TAATATTAAGCATATGCTCC+TGG - Chr4:91624509-91624528 MsG0480023952.01.T01:intron 30.0%
TGATTTCAGATTCCAAACTT+TGG - Chr4:91624119-91624138 MsG0480023952.01.T01:intron 30.0%
TGCATGTAGAAACCATATAA+AGG + Chr4:91624948-91624967 None:intergenic 30.0%
TTGATTGCTTTGCTTATCTT+TGG - Chr4:91625359-91625378 MsG0480023952.01.T01:CDS 30.0%
! AATTGCTATTGCTTACGTAT+TGG - Chr4:91625259-91625278 MsG0480023952.01.T01:CDS 30.0%
! ATTGCTATTGCTTACGTATT+GGG - Chr4:91625260-91625279 MsG0480023952.01.T01:CDS 30.0%
! TTTTATCCGTTTGCATTTCA+TGG + Chr4:91624536-91624555 None:intergenic 30.0%
AACAAATTGGTTACTTGGCA+TGG - Chr4:91625176-91625195 MsG0480023952.01.T01:intron 35.0%
ATAAAAGAAACCCACGTGTA+AGG + Chr4:91624586-91624605 None:intergenic 35.0%
ATGAACATGTAAGGAATGAG+AGG + Chr4:91625296-91625315 None:intergenic 35.0%
GAGTCCAAACCAAATAGTAT+CGG + Chr4:91624164-91624183 None:intergenic 35.0%
GCATTAGGAATGAACATGTA+AGG + Chr4:91625305-91625324 None:intergenic 35.0%
TACACCGATACTATTTGGTT+TGG - Chr4:91624157-91624176 MsG0480023952.01.T01:intron 35.0%
TATTATTTCAGAAGCTGCTG+AGG - Chr4:91623789-91623808 MsG0480023952.01.T01:intron 35.0%
! GCATTGCAAACTCCAAATTT+TGG + Chr4:91623983-91624002 None:intergenic 35.0%
!! AAATATCTCTGGTCTTGGTT+TGG - Chr4:91624692-91624711 MsG0480023952.01.T01:intron 35.0%
!! ATTCACGTTTTTAAGGAAGC+AGG + Chr4:91625095-91625114 None:intergenic 35.0%
!! CTTATCTTTGGCTTTGTCAA+GGG - Chr4:91625371-91625390 MsG0480023952.01.T01:CDS 35.0%
!!! AAAGAGAAAGGCACTTTTTC+TGG - Chr4:91624053-91624072 MsG0480023952.01.T01:intron 35.0%
AACGATGGAAGAAGTAGCAT+TGG + Chr4:91623459-91623478 None:intergenic 40.0%
ACTATGTTGTGTTGTCGTGA+AGG - Chr4:91623610-91623629 MsG0480023952.01.T01:intron 40.0%
AGTTATATGCTGGCAAGAGT+GGG - Chr4:91624025-91624044 MsG0480023952.01.T01:intron 40.0%
ATCGTTACAGTACCAGAAAC+TGG - Chr4:91623696-91623715 MsG0480023952.01.T01:intron 40.0%
ATGAAATCAAGCCATGCTTG+AGG + Chr4:91623889-91623908 None:intergenic 40.0%
ATTGGCTGAGTATGGAATAG+AGG - Chr4:91623822-91623841 MsG0480023952.01.T01:intron 40.0%
CACAGTACACCGATACTATT+TGG - Chr4:91624152-91624171 MsG0480023952.01.T01:intron 40.0%
GCACTATACAATGCTCTTCT+TGG + Chr4:91625233-91625252 None:intergenic 40.0%
GTTCATTCCTAATGCATCAG+AGG - Chr4:91625310-91625329 MsG0480023952.01.T01:CDS 40.0%
TACAATGCTCTTCTTGGATC+TGG + Chr4:91625227-91625246 None:intergenic 40.0%
TAGAGGTAGAGATTTACTGG+TGG - Chr4:91624844-91624863 MsG0480023952.01.T01:intron 40.0%
TAGTTATATGCTGGCAAGAG+TGG - Chr4:91624024-91624043 MsG0480023952.01.T01:intron 40.0%
TGAGAAAGAATCCTCAAGCA+TGG - Chr4:91623875-91623894 MsG0480023952.01.T01:intron 40.0%
TTACGATACGAACCAGTTTC+TGG + Chr4:91623711-91623730 None:intergenic 40.0%
! GCAGAAATATTGGCTGAGTA+TGG - Chr4:91623814-91623833 MsG0480023952.01.T01:intron 40.0%
! GGAATAGAGGCACATGAATA+TGG - Chr4:91623835-91623854 MsG0480023952.01.T01:intron 40.0%
!! CAAATAGTATCGGTGTACTG+TGG + Chr4:91624154-91624173 None:intergenic 40.0%
!! GCTTATCTTTGGCTTTGTCA+AGG - Chr4:91625370-91625389 MsG0480023952.01.T01:CDS 40.0%
!! GCTTTGGAAACTGCTCTAAT+TGG - Chr4:91625425-91625444 MsG0480023952.01.T01:CDS 40.0%
!! TGAAGGTATTTGGCAGCAAA+AGG - Chr4:91623627-91623646 MsG0480023952.01.T01:intron 40.0%
!! TGTGTTGTCGTGAAGGTATT+TGG - Chr4:91623617-91623636 MsG0480023952.01.T01:intron 40.0%
!!! AAAGGCACTTTTTCTGGTTG+TGG - Chr4:91624059-91624078 MsG0480023952.01.T01:intron 40.0%
!!! AAGGCACTTTTTCTGGTTGT+GGG - Chr4:91624060-91624079 MsG0480023952.01.T01:intron 40.0%
AATTGGTTACTTGGCATGGC+AGG - Chr4:91625180-91625199 MsG0480023952.01.T01:intron 45.0%
AGAACAGCCTCTGATGCATT+AGG + Chr4:91625320-91625339 None:intergenic 45.0%
ATCATCATCGGCGTTTCTGA+TGG - Chr4:91623392-91623411 MsG0480023952.01.T01:CDS 45.0%
ATCCTAGAGAACCTTACACG+TGG - Chr4:91624572-91624591 MsG0480023952.01.T01:intron 45.0%
ATCGTCCGTGACATCATCAT+CGG - Chr4:91623380-91623399 MsG0480023952.01.T01:CDS 45.0%
CCTGGTCCATGAAATGCAAA+CGG - Chr4:91624527-91624546 MsG0480023952.01.T01:intron 45.0%
GAGTGGGATTGGAAAGAGAA+AGG - Chr4:91624041-91624060 MsG0480023952.01.T01:intron 45.0%
GCATGTCCACACTGAAAAAG+TGG + Chr4:91624089-91624108 None:intergenic 45.0%
GCTATTGCTTACGTATTGGG+TGG - Chr4:91625263-91625282 MsG0480023952.01.T01:CDS 45.0%
TATTTCAGAAGCTGCTGAGG+TGG - Chr4:91623792-91623811 MsG0480023952.01.T01:intron 45.0%
TCCTAGAGAACCTTACACGT+GGG - Chr4:91624573-91624592 MsG0480023952.01.T01:intron 45.0%
TGCTGAGGTGGCAGAAATAT+TGG - Chr4:91623804-91623823 MsG0480023952.01.T01:intron 45.0%
TTTCAGTGTGGCGATTGAGA+AGG + Chr4:91623340-91623359 None:intergenic 45.0%
TTTGTCAAGGGATGCTTCAC+CGG - Chr4:91625383-91625402 MsG0480023952.01.T01:CDS 45.0%
! AAACGCCGATGATGATGTCA+CGG + Chr4:91623388-91623407 None:intergenic 45.0%
! AGAGGCTGTTCTTGTTTCAG+TGG - Chr4:91625328-91625347 MsG0480023952.01.T01:CDS 45.0%
! AGCTGCTTATGGTTTGGCAA+AGG - Chr4:91625463-91625482 MsG0480023952.01.T01:CDS 45.0%
! GTTTCCAAAGCACTCCTGAT+AGG + Chr4:91625416-91625435 None:intergenic 45.0%
! TTGAGAAGGCTCTGTTTCTC+AGG + Chr4:91623326-91623345 None:intergenic 45.0%
! TTTCTCAGAGCATTCACCAC+AGG + Chr4:91623862-91623881 None:intergenic 45.0%
!!! GGGTTTCCACTTTTTCAGTG+TGG - Chr4:91624080-91624099 MsG0480023952.01.T01:intron 45.0%
!!! TATTTTATTTATTCTAAAAA+TGG - Chr4:91623736-91623755 MsG0480023952.01.T01:intron 5.0%
ACCCACGTGTAAGGTTCTCT+AGG + Chr4:91624577-91624596 None:intergenic 50.0%
ATAAGCAGCTGCAGAGGCAA+TGG + Chr4:91625453-91625472 None:intergenic 50.0%
ATTGCCTCTGCAGCTGCTTA+TGG - Chr4:91625452-91625471 MsG0480023952.01.T01:CDS 50.0%
CAAACCATAAGCAGCTGCAG+AGG + Chr4:91625459-91625478 None:intergenic 50.0%
CCGTTTGCATTTCATGGACC+AGG + Chr4:91624530-91624549 None:intergenic 50.0%
CTCTGCAGCTGCTTATGGTT+TGG - Chr4:91625457-91625476 MsG0480023952.01.T01:CDS 50.0%
GGCACATGAATATGGACCTG+TGG - Chr4:91623843-91623862 MsG0480023952.01.T01:intron 50.0%
TATGCTGGCAAGAGTGGGAT+TGG - Chr4:91624030-91624049 MsG0480023952.01.T01:intron 50.0%
TCTTCCATCGTTCTCACTGC+CGG - Chr4:91623467-91623486 MsG0480023952.01.T01:CDS 50.0%
TGGCACGCATGACCAAAGTT+TGG + Chr4:91624134-91624153 None:intergenic 50.0%
! GGCTCTGTTTCTCAGGTTCA+AGG + Chr4:91623319-91623338 None:intergenic 50.0%
! GGCTGTTCTTGTTTCAGTGG+TGG - Chr4:91625331-91625350 MsG0480023952.01.T01:CDS 50.0%
!! ACTCCTGATAGGCTTGTTGC+CGG + Chr4:91625405-91625424 None:intergenic 50.0%
!! ACTGAAAAGCACTTCACCGC+CGG - Chr4:91623353-91623372 MsG0480023952.01.T01:CDS 50.0%
!! CAAGCCTATCAGGAGTGCTT+TGG - Chr4:91625409-91625428 MsG0480023952.01.T01:CDS 50.0%
!! CGGTGAAGTGCTTTTCAGTG+TGG + Chr4:91623352-91623371 None:intergenic 50.0%
GATGTCACGGACGATCTCAC+CGG + Chr4:91623375-91623394 None:intergenic 55.0%
TCACCGGCAACAAGCCTATC+AGG - Chr4:91625399-91625418 MsG0480023952.01.T01:CDS 55.0%
TGGCATGGCAGGTTTGAGCT+GGG - Chr4:91625191-91625210 MsG0480023952.01.T01:intron 55.0%
TTGGCATGGCAGGTTTGAGC+TGG - Chr4:91625190-91625209 MsG0480023952.01.T01:intron 55.0%
CCATCTCCATGGGTCTCGGA+GGG - Chr4:91623513-91623532 MsG0480023952.01.T01:CDS 60.0%
GATGCCGGCAGTGAGAACGA+TGG + Chr4:91623474-91623493 None:intergenic 60.0%
GTGTTACCCTCCGAGACCCA+TGG + Chr4:91623522-91623541 None:intergenic 60.0%
!! AGCATTGGCGCCAGAGAGAC+CGG + Chr4:91623444-91623463 None:intergenic 60.0%
ATTGGCGCCAGAGAGACCGG+CGG + Chr4:91623441-91623460 None:intergenic 65.0%
CCCTCCGAGACCCATGGAGA+TGG + Chr4:91623516-91623535 None:intergenic 65.0%
GAGACCCATGGAGATGGCGC+CGG + Chr4:91623510-91623529 None:intergenic 65.0%
GCCATCTCCATGGGTCTCGG+AGG - Chr4:91623512-91623531 MsG0480023952.01.T01:CDS 65.0%
GGCGCCATCTCCATGGGTCT+CGG - Chr4:91623509-91623528 MsG0480023952.01.T01:CDS 65.0%
GTCACGGACGATCTCACCGG+CGG + Chr4:91623372-91623391 None:intergenic 65.0%
GGCGGCGAGGGCGAAAGGAA+CGG + Chr4:91623423-91623442 None:intergenic 70.0%
GTTCCTTTCGCCCTCGCCGC+CGG - Chr4:91623422-91623441 MsG0480023952.01.T01:CDS 70.0%
! ACCCATGGAGATGGCGCCGG+CGG + Chr4:91623507-91623526 None:intergenic 70.0%
AGACCGGCGGCGAGGGCGAA+AGG + Chr4:91623428-91623447 None:intergenic 75.0%
GCCAGAGAGACCGGCGGCGA+GGG + Chr4:91623435-91623454 None:intergenic 75.0%
GCCGCCGGCGCCATCTCCAT+GGG - Chr4:91623503-91623522 MsG0480023952.01.T01:CDS 75.0%
GGCATCGCCGAAGTCGCCGC+CGG - Chr4:91623488-91623507 MsG0480023952.01.T01:CDS 75.0%
GGCGGCGACTTCGGCGATGC+CGG + Chr4:91623489-91623508 None:intergenic 75.0%
!! GATGGCGCCGGCGGCGACTT+CGG + Chr4:91623498-91623517 None:intergenic 75.0%
! CGCCAGAGAGACCGGCGGCG+AGG + Chr4:91623436-91623455 None:intergenic 80.0%
! CGCCGCCGGCGCCATCTCCA+TGG - Chr4:91623502-91623521 MsG0480023952.01.T01:CDS 80.0%
! GCCCTCGCCGCCGGTCTCTC+TGG - Chr4:91623431-91623450 MsG0480023952.01.T01:CDS 80.0%
Chromosome Type Strat End Strand Name
Chr4 gene 91623284 91625499 91623284 ID=MsG0480023952.01;Name=MsG0480023952.01
Chr4 mRNA 91623284 91625499 91623284 ID=MsG0480023952.01.T01;Parent=MsG0480023952.01;Name=MsG0480023952.01.T01;_AED=0.41;_eAED=0.41;_QI=0|0|0|1|1|1|4|0|249
Chr4 exon 91625249 91625499 91625249 ID=MsG0480023952.01.T01:exon:12696;Parent=MsG0480023952.01.T01
Chr4 exon 91625066 91625151 91625066 ID=MsG0480023952.01.T01:exon:12695;Parent=MsG0480023952.01.T01
Chr4 exon 91624869 91624983 91624869 ID=MsG0480023952.01.T01:exon:12694;Parent=MsG0480023952.01.T01
Chr4 exon 91623284 91623581 91623284 ID=MsG0480023952.01.T01:exon:12693;Parent=MsG0480023952.01.T01
Chr4 CDS 91625249 91625499 91625249 ID=MsG0480023952.01.T01:cds;Parent=MsG0480023952.01.T01
Chr4 CDS 91625066 91625151 91625066 ID=MsG0480023952.01.T01:cds;Parent=MsG0480023952.01.T01
Chr4 CDS 91624869 91624983 91624869 ID=MsG0480023952.01.T01:cds;Parent=MsG0480023952.01.T01
Chr4 CDS 91623284 91623581 91623284 ID=MsG0480023952.01.T01:cds;Parent=MsG0480023952.01.T01
Gene Sequence

>MsG0480023952.01.T01

ATGGCTGGTAATGGCGACGAACACAGACTAAACCTTGAACCTGAGAAACAGAGCCTTCTCAATCGCCACACTGAAAAGCACTTCACCGCCGGTGAGATCGTCCGTGACATCATCATCGGCGTTTCTGATGGACTCACCGTTCCTTTCGCCCTCGCCGCCGGTCTCTCTGGCGCCAATGCTACTTCTTCCATCGTTCTCACTGCCGGCATCGCCGAAGTCGCCGCCGGCGCCATCTCCATGGGTCTCGGAGGGTATTTGGCAGCAAAAGGTGAAGCTGATCATTACAATAGAGAATTGAAAAGGGAACAAGAAGAAATCGTTACAGTACCAGAAACTGAAGCTGCTGAGGTGGCAGAAATATTGGCTGAGTATGGAATAGAGGCACATGAATATGGACCTGTGGTGAATGCTCTGAGAAAGAATCCTCAAGCATGGCTTGATTTCATGATGAAGTTTGAGCTGGGACTAGAGAAGCCAGATCCAAGAAGAGCATTGTATAGTGCAATGACAATTGCTATTGCTTACGTATTGGGTGGAATTGTTCCTCTCATTCCTTACATGTTCATTCCTAATGCATCAGAGGCTGTTCTTGTTTCAGTGGTGGTTACATTGATTGCTTTGCTTATCTTTGGCTTTGTCAAGGGATGCTTCACCGGCAACAAGCCTATCAGGAGTGCTTTGGAAACTGCTCTAATTGGTGCCATTGCCTCTGCAGCTGCTTATGGTTTGGCAAAGGCTTTCCATCCATAG
Protein sequence

>MsG0480023952.01.T01

MAGNGDEHRLNLEPEKQSLLNRHTEKHFTAGEIVRDIIIGVSDGLTVPFALAAGLSGANATSSIVLTAGIAEVAAGAISMGLGGYLAAKGEADHYNRELKREQEEIVTVPETEAAEVAEILAEYGIEAHEYGPVVNALRKNPQAWLDFMMKFELGLEKPDPRRALYSAMTIAIAYVLGGIVPLIPYMFIPNASEAVLVSVVVTLIALLIFGFVKGCFTGNKPIRSALETALIGAIASAAAYGLAKAFHP*