AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025983.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025983.01.T01 MTR_5g037050 89.655 261 25 2 1 259 1 261 9.55e-163 454
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025983.01.T01 AT1G59840 67.159 271 85 3 25 292 16 285 2.82e-127 365
MsG0580025983.01.T01 AT1G59840 67.159 271 85 3 25 292 16 285 2.82e-127 365
MsG0580025983.01.T01 AT1G59840 62.362 271 84 4 25 292 16 271 1.75e-113 329

Find 76 sgRNAs with CRISPR-Local

Find 446 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAATCGCGTTTGGGGTTT+GGG 0.157929 5:+28653498 None:intergenic
ATTGGCTGTCACTAATATTT+TGG 0.169732 5:-28652263 MsG0580025983.01.T01:CDS
GATAAAGGAATTGCAATTAT+TGG 0.221692 5:-28647629 MsG0580025983.01.T01:CDS
CGCGTTTGGGGTTTGGGGTT+CGG 0.244937 5:+28653504 None:intergenic
AGCAATTGCGTTCTTCAATT+TGG 0.245662 5:-28650984 MsG0580025983.01.T01:CDS
CGAGCAGACCTCTTAACTTT+AGG 0.254418 5:-28652286 MsG0580025983.01.T01:CDS
GCTTACCACACTTATAGATT+TGG 0.289785 5:+28652213 None:intergenic
TTACAACCACTTGGAGATAA+AGG 0.298640 5:-28647644 MsG0580025983.01.T01:CDS
AGAAAATCGCGTTTGGGGTT+TGG 0.300727 5:+28653497 None:intergenic
CCCAGGATAAAGAGATAAAT+TGG 0.302853 5:+28650707 None:intergenic
TGATCCTTGCATCAATTTAT+CGG 0.323093 5:+28650911 None:intergenic
CTTACCACACTTATAGATTT+GGG 0.327187 5:+28652214 None:intergenic
GATGCAAGGATCAGTATATC+AGG 0.330105 5:-28650901 MsG0580025983.01.T01:CDS
TTTGCTGCAGAATCTTCTCC+TGG 0.331987 5:-28650960 MsG0580025983.01.T01:CDS
GCCAATTTATCTCTTTATCC+TGG 0.346357 5:-28650708 MsG0580025983.01.T01:CDS
AGCTCCGTACGTGCAACGTC+AGG 0.359439 5:+28651476 None:intergenic
TCAGGTAGAAAATCGCGTTT+GGG 0.371139 5:+28653491 None:intergenic
CTCTTCAATCGAACCATCTC+CGG 0.387017 5:-28653395 MsG0580025983.01.T01:CDS
TATCAGGGTGTTATGAAATC+TGG 0.393157 5:-28650885 MsG0580025983.01.T01:CDS
GAAACGGCACCAACGTAGAT+TGG 0.416070 5:+28653431 None:intergenic
ATCAGGTAGAAAATCGCGTT+TGG 0.417803 5:+28653490 None:intergenic
ATTGCTCCCGTCGCCGATGC+CGG 0.425718 5:-28653371 MsG0580025983.01.T01:CDS
AGGTTTCACTACTTCTGATC+AGG 0.430529 5:-28647591 MsG0580025983.01.T01:intron
TGAGTATTTGAAGGCAGAAA+TGG 0.446826 5:+28650672 None:intergenic
CTCCCGTCGCCGATGCCGGC+AGG 0.447988 5:-28653367 MsG0580025983.01.T01:intron
TACCTATATCGGAGAGAAGC+TGG 0.448013 5:-28647277 MsG0580025983.01.T01:CDS
ATCGGCGACGGGAGCAATGC+CGG 0.450747 5:+28653376 None:intergenic
CAGGCATGGATTACCTATAT+CGG 0.451783 5:-28647288 MsG0580025983.01.T01:CDS
CGCAATACCTGAGTATTTGA+AGG 0.456371 5:+28650663 None:intergenic
ATCCAGCTTCTCTCCGATAT+AGG 0.459920 5:+28647275 None:intergenic
AACCTGCCGGCATCGGCGAC+GGG 0.462272 5:+28653365 None:intergenic
AAACGGCACCAACGTAGATT+GGG 0.480694 5:+28653432 None:intergenic
AGACCTCTTAACTTTAGGAT+TGG 0.481817 5:-28652281 MsG0580025983.01.T01:CDS
TTGCACGTACGGAGCTGCTC+TGG 0.482984 5:-28651469 MsG0580025983.01.T01:intron
CTTGCAGCCTCGCCATTCCC+AGG 0.494296 5:+28650942 None:intergenic
AAAATATGTGAAACAACATC+AGG 0.494528 5:-28647241 MsG0580025983.01.T01:CDS
ACAACAAATTTCCATGGAAG+CGG 0.499618 5:-28653669 None:intergenic
CCAATTTATCTCTTTATCCT+GGG 0.500173 5:-28650707 MsG0580025983.01.T01:CDS
TACATGTTCAGAGAGTTACT+TGG 0.506725 5:-28650730 MsG0580025983.01.T01:intron
TCTCCCTGACGTTGCACGTA+CGG 0.509037 5:-28651480 MsG0580025983.01.T01:CDS
GAGCGCGGTTCCCGCTTCCA+TGG 0.513242 5:+28653658 None:intergenic
TTGCTGCAGAATCTTCTCCT+GGG 0.513330 5:-28650959 MsG0580025983.01.T01:CDS
AAATGAGAACCTGCCGGCAT+CGG 0.513828 5:+28653358 None:intergenic
GACGGGAGCAATGCCGGAGA+TGG 0.516836 5:+28653382 None:intergenic
ATTTCTGCCTTCAAATACTC+AGG 0.520975 5:-28650670 MsG0580025983.01.T01:intron
AAAATCGCGTTTGGGGTTTG+GGG 0.521649 5:+28653499 None:intergenic
AAAGGAATTGCAATTATTGG+TGG 0.524269 5:-28647626 MsG0580025983.01.T01:CDS
GAACCTGCCGGCATCGGCGA+CGG 0.533884 5:+28653364 None:intergenic
CAGCCAATCCTAAAGTTAAG+AGG 0.537186 5:+28652278 None:intergenic
CAACAAATTTCCATGGAAGC+GGG 0.541995 5:-28653668 None:intergenic
ATTGGTGGTGACACAATTCG+AGG 0.546724 5:-28647611 MsG0580025983.01.T01:CDS
GCAGAATCTTCTCCTGGGAA+TGG 0.549364 5:-28650954 MsG0580025983.01.T01:CDS
AATAACAAGTGATCGGCAGC+AGG 0.550991 5:+28651016 None:intergenic
AATGGCAGCTCAGACTTCCC+AGG 0.569160 5:+28650690 None:intergenic
CGTAAACAATAACAAGTGAT+CGG 0.569368 5:+28651009 None:intergenic
CGGCACCAACGTAGATTGGG+AGG 0.571107 5:+28653435 None:intergenic
GAATGGCGAGGCTGCAAGTG+TGG 0.585594 5:-28650937 MsG0580025983.01.T01:CDS
GATGGTTCGATTGAAGAGTA+CGG 0.587779 5:+28653400 None:intergenic
GAGTACGGCGAAGAGAGAAA+CGG 0.595812 5:+28653415 None:intergenic
TTTGTCCAGGTAAATCCTCA+GGG 0.596877 5:-28651530 MsG0580025983.01.T01:intron
GCACCAACGTAGATTGGGAG+GGG 0.599147 5:+28653437 None:intergenic
GCTCCGTACGTGCAACGTCA+GGG 0.601121 5:+28651477 None:intergenic
AGTGAAGTGGACACGGAGCG+CGG 0.614815 5:+28653643 None:intergenic
GCAATTCCTTTATCTCCAAG+TGG 0.617458 5:+28647638 None:intergenic
AGAATGTGAGTTTGAGTGTG+GGG 0.622360 5:+28653617 None:intergenic
TAAGAATGTGAGTTTGAGTG+TGG 0.625982 5:+28653615 None:intergenic
ATGCAAGGATCAGTATATCA+GGG 0.627292 5:-28650900 MsG0580025983.01.T01:CDS
AAAACCCAAATCTATAAGTG+TGG 0.629385 5:-28652218 MsG0580025983.01.T01:intron
GAATGTGAGTTTGAGTGTGG+GGG 0.630266 5:+28653618 None:intergenic
ATCTTCTCCTGGGAATGGCG+AGG 0.633157 5:-28650949 MsG0580025983.01.T01:CDS
TTCTTGCATTCAACTCCCTG+AGG 0.634438 5:+28651515 None:intergenic
GACACCGATAAATTGATGCA+AGG 0.639272 5:-28650915 MsG0580025983.01.T01:CDS
GGCACCAACGTAGATTGGGA+GGG 0.641224 5:+28653436 None:intergenic
CGACCCCTCCCAATCTACGT+TGG 0.664091 5:-28653440 MsG0580025983.01.T01:CDS
AAGAATGTGAGTTTGAGTGT+GGG 0.675966 5:+28653616 None:intergenic
CAGGTAGAAAATCGCGTTTG+GGG 0.684893 5:+28653492 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTATTTGAGAAAATTAT+TGG + Chr5:28648116-28648135 None:intergenic 10.0%
!! AAAATTATTGGAGATATAAT+AGG + Chr5:28648104-28648123 None:intergenic 15.0%
!! ATGATTGAAATTTGAAAATT+TGG - Chr5:28649526-28649545 MsG0580025983.01.T01:intron 15.0%
!! ATTAATACAATTCATTATGT+TGG - Chr5:28653496-28653515 MsG0580025983.01.T01:CDS 15.0%
!! TTGAAAAATACTATAAATCA+GGG - Chr5:28650697-28650716 MsG0580025983.01.T01:CDS 15.0%
!! TTTGAAAAATACTATAAATC+AGG - Chr5:28650696-28650715 MsG0580025983.01.T01:CDS 15.0%
!!! AATTTTAAACAAATCTACAA+AGG + Chr5:28648881-28648900 None:intergenic 15.0%
!!! ATCTTTTATTAACTTTTATC+AGG - Chr5:28649822-28649841 MsG0580025983.01.T01:intron 15.0%
!!! TCTTTTATTAACTTTTATCA+GGG - Chr5:28649823-28649842 MsG0580025983.01.T01:intron 15.0%
!!! TTTATTGTTTTGCTAAAAAA+AGG + Chr5:28652714-28652733 None:intergenic 15.0%
!!! TTTTTACTAACAAATGTTAT+TGG - Chr5:28653191-28653210 MsG0580025983.01.T01:intron 15.0%
!!! TTTTTTAGCAAAACAATAAA+TGG - Chr5:28652714-28652733 MsG0580025983.01.T01:intron 15.0%
!! AAATATAGAAACATAGCATT+TGG - Chr5:28652675-28652694 MsG0580025983.01.T01:intron 20.0%
!! AATAAATGGTAACTATAAGT+TGG - Chr5:28652728-28652747 MsG0580025983.01.T01:intron 20.0%
!! ACGATACTATAGAATTATAT+TGG - Chr5:28650822-28650841 MsG0580025983.01.T01:intron 20.0%
!! ACTTGAAAAATCTGATTAAA+TGG - Chr5:28652350-28652369 MsG0580025983.01.T01:intron 20.0%
!! GAAAACAATTAAGTAGAAAT+AGG - Chr5:28648943-28648962 MsG0580025983.01.T01:intron 20.0%
!! GAAAATTTGGATCATTAATA+TGG - Chr5:28649539-28649558 MsG0580025983.01.T01:intron 20.0%
!! GAGTTAATGATTGTTAATTA+GGG - Chr5:28648547-28648566 MsG0580025983.01.T01:intron 20.0%
!! GATAGTATCTTATATTTGTT+TGG + Chr5:28651042-28651061 None:intergenic 20.0%
!! GATATATTAGTATAACATGT+AGG + Chr5:28653383-28653402 None:intergenic 20.0%
!!! AGATTTTTCAAGTTTTCATA+TGG + Chr5:28652343-28652362 None:intergenic 20.0%
!!! ATAATAGGTTAGTTATTAGT+TGG + Chr5:28648089-28648108 None:intergenic 20.0%
!!! ATGCTATGTTTCTATATTTA+TGG + Chr5:28652674-28652693 None:intergenic 20.0%
!!! GGATATAATTTCACTATTTT+TGG + Chr5:28650579-28650598 None:intergenic 20.0%
!!! GTAATTTTTGTTATGAAACA+TGG - Chr5:28647928-28647947 MsG0580025983.01.T01:intron 20.0%
!!! TATAATTTCACTATTTTTGG+CGG + Chr5:28650576-28650595 None:intergenic 20.0%
!!! TATTTTCCAAAATATATGCA+CGG - Chr5:28649081-28649100 MsG0580025983.01.T01:intron 20.0%
!!! TCTAGAAAAGTATTAGATTA+GGG + Chr5:28649270-28649289 None:intergenic 20.0%
!!! TTCTAGAAAAGTATTAGATT+AGG + Chr5:28649271-28649290 None:intergenic 20.0%
!!! TTGTTTCACATATTTTGAAA+GGG + Chr5:28653641-28653660 None:intergenic 20.0%
!!! TTTCATACACTAACTATTTT+GGG + Chr5:28650522-28650541 None:intergenic 20.0%
!!! TTTTCATACACTAACTATTT+TGG + Chr5:28650523-28650542 None:intergenic 20.0%
! AAAAAAATGAGACTATATCC+AGG + Chr5:28652546-28652565 None:intergenic 25.0%
! AAAATATGTGAAACAACATC+AGG - Chr5:28653645-28653664 MsG0580025983.01.T01:CDS 25.0%
! AACAAACAGAATCATGATAA+AGG + Chr5:28648737-28648756 None:intergenic 25.0%
! AGAAGTAAATAACAGTGAAA+AGG + Chr5:28648705-28648724 None:intergenic 25.0%
! AGAATCATGATAAAGGAAAA+TGG + Chr5:28648730-28648749 None:intergenic 25.0%
! ATAACTATTGAAATGCTTAC+AGG - Chr5:28653579-28653598 MsG0580025983.01.T01:CDS 25.0%
! ATGATTTCCCAAAAAAAATC+TGG + Chr5:28651299-28651318 None:intergenic 25.0%
! ATTAATATGGCTTTCTTTCA+TGG - Chr5:28649552-28649571 MsG0580025983.01.T01:intron 25.0%
! CGAGTTAATGATTGTTAATT+AGG - Chr5:28648546-28648565 MsG0580025983.01.T01:intron 25.0%
! GATAAAGGAATTGCAATTAT+TGG - Chr5:28653257-28653276 MsG0580025983.01.T01:intron 25.0%
! GGTATTTCAAAATCATATCA+GGG - Chr5:28650955-28650974 MsG0580025983.01.T01:CDS 25.0%
! GTATTTCAAAATCATATCAG+GGG - Chr5:28650956-28650975 MsG0580025983.01.T01:CDS 25.0%
! TATAAGTACCCAATTACTTT+GGG - Chr5:28651441-28651460 MsG0580025983.01.T01:intron 25.0%
! TATGTTTCAGTCCAAAAAAA+AGG - Chr5:28652865-28652884 MsG0580025983.01.T01:intron 25.0%
! TCTCATAACAATGTATTACA+CGG + Chr5:28648424-28648443 None:intergenic 25.0%
! TGATGAACAGCAAATAAATA+TGG + Chr5:28650283-28650302 None:intergenic 25.0%
! TGATTATTGTTGCTATGTTA+TGG + Chr5:28652190-28652209 None:intergenic 25.0%
! TGTTGTTGAATATTGAGTAA+AGG - Chr5:28647646-28647665 MsG0580025983.01.T01:CDS 25.0%
! TTATAAAACCAACTTACTCA+TGG + Chr5:28650861-28650880 None:intergenic 25.0%
! TTATAAGTACCCAATTACTT+TGG - Chr5:28651440-28651459 MsG0580025983.01.T01:intron 25.0%
! TTGGGTACTTATAATAATAG+TGG + Chr5:28651434-28651453 None:intergenic 25.0%
! TTGTGATGAATGATTCATAT+TGG + Chr5:28650055-28650074 None:intergenic 25.0%
! TTTCATTCTCTCTAATTTAC+TGG - Chr5:28648472-28648491 MsG0580025983.01.T01:intron 25.0%
!! AAAAAAGGAGAAACAGTTTT+TGG - Chr5:28652880-28652899 MsG0580025983.01.T01:intron 25.0%
!! AAAAAGGAGAAACAGTTTTT+GGG - Chr5:28652881-28652900 MsG0580025983.01.T01:intron 25.0%
!! AAGGGACATCTATAAATTTT+AGG - Chr5:28651000-28651019 MsG0580025983.01.T01:CDS 25.0%
!! ATACTTTTACTGTCAACAAA+CGG + Chr5:28649804-28649823 None:intergenic 25.0%
!! ATATATCTCATTTGTTAGCT+TGG + Chr5:28652042-28652061 None:intergenic 25.0%
!! TATATCTCATTTGTTAGCTT+GGG + Chr5:28652041-28652060 None:intergenic 25.0%
!! TTCATACACTAACTATTTTG+GGG + Chr5:28650521-28650540 None:intergenic 25.0%
!! TTTAACAAGGAATAATTTGC+AGG + Chr5:28653523-28653542 None:intergenic 25.0%
!!! AAACTGTTTCTCCTTTTTTT+TGG + Chr5:28652879-28652898 None:intergenic 25.0%
!!! AAAGAACTTGTTAAAGTACA+AGG + Chr5:28650309-28650328 None:intergenic 25.0%
!!! ACTTATAGATTTGGGTTTTA+TGG + Chr5:28648667-28648686 None:intergenic 25.0%
!!! AGATTTTTTTTGGGAAATCA+TGG - Chr5:28651298-28651317 MsG0580025983.01.T01:intron 25.0%
!!! CCTTAATATCTAGCTTTAAA+GGG + Chr5:28651473-28651492 None:intergenic 25.0%
!!! CCTTTAAAGCTAGATATTAA+GGG - Chr5:28651471-28651490 MsG0580025983.01.T01:CDS 25.0%
!!! CTTTAAAGCTAGATATTAAG+GGG - Chr5:28651472-28651491 MsG0580025983.01.T01:CDS 25.0%
!!! GTTGTTTCACATATTTTGAA+AGG + Chr5:28653642-28653661 None:intergenic 25.0%
!!! TGTTATCTTGATGGATTTAT+TGG - Chr5:28651110-28651129 MsG0580025983.01.T01:intron 25.0%
!!! TTCATATATTTGTGGATTAG+TGG - Chr5:28653555-28653574 MsG0580025983.01.T01:CDS 25.0%
AAAAAGAGACCAACTATAGT+CGG + Chr5:28652416-28652435 None:intergenic 30.0%
AAAACCCAAATCTATAAGTG+TGG - Chr5:28648668-28648687 MsG0580025983.01.T01:intron 30.0%
AAAGGAATTGCAATTATTGG+TGG - Chr5:28653260-28653279 MsG0580025983.01.T01:intron 30.0%
AAGGCATAAAGATCATATCA+GGG - Chr5:28652014-28652033 MsG0580025983.01.T01:intron 30.0%
AATAACAGTGAAAAGGAATG+AGG + Chr5:28648698-28648717 None:intergenic 30.0%
AATATAGGGATATGCTCAAT+TGG - Chr5:28651969-28651988 MsG0580025983.01.T01:intron 30.0%
AATGTCTTATCTATCTAGTG+TGG - Chr5:28648513-28648532 MsG0580025983.01.T01:intron 30.0%
ACATCCTAATTAGATGTGAT+TGG + Chr5:28649048-28649067 None:intergenic 30.0%
AGATCCAATCACATCTAATT+AGG - Chr5:28649041-28649060 MsG0580025983.01.T01:intron 30.0%
AGTGGGATTCTGTTATATAT+GGG + Chr5:28651787-28651806 None:intergenic 30.0%
AGTGTCTATAAATAGAGTTG+AGG + Chr5:28648047-28648066 None:intergenic 30.0%
ATAAATCAGGGAATGAAAAC+AGG - Chr5:28650709-28650728 MsG0580025983.01.T01:CDS 30.0%
ATGAGGAAAAAGAATAGAGA+TGG - Chr5:28652939-28652958 MsG0580025983.01.T01:intron 30.0%
ATGTAATCAATCACAAGTGT+AGG + Chr5:28648203-28648222 None:intergenic 30.0%
CAAAGAGGAAAATTAGAGAA+GGG + Chr5:28651852-28651871 None:intergenic 30.0%
CAAATATAAGATACTATCCC+CGG - Chr5:28651044-28651063 MsG0580025983.01.T01:CDS 30.0%
CAACAATAATCATGTCTTTC+AGG - Chr5:28652198-28652217 MsG0580025983.01.T01:intron 30.0%
CAGTAGCATTCATATATTTG+TGG - Chr5:28653547-28653566 MsG0580025983.01.T01:CDS 30.0%
CCAATTTATCTCTTTATCCT+GGG - Chr5:28650179-28650198 MsG0580025983.01.T01:intron 30.0%
CGTAAACAATAACAAGTGAT+CGG + Chr5:28649880-28649899 None:intergenic 30.0%
CTACTTAAAACTGTTTGCAT+TGG + Chr5:28647830-28647849 None:intergenic 30.0%
CTCATAAAATTCATCTGATC+TGG + Chr5:28652924-28652943 None:intergenic 30.0%
CTTACCACACTTATAGATTT+GGG + Chr5:28648675-28648694 None:intergenic 30.0%
GACAAAAACAAGCCTATTAT+CGG + Chr5:28649342-28649361 None:intergenic 30.0%
GAGTGAAGAACAATTTAGAT+AGG - Chr5:28650649-28650668 MsG0580025983.01.T01:intron 30.0%
GATCTGATATGTTATCTTGA+TGG - Chr5:28651101-28651120 MsG0580025983.01.T01:intron 30.0%
GGGTATTTCAAAATCATATC+AGG - Chr5:28650954-28650973 MsG0580025983.01.T01:CDS 30.0%
GTAGGTTCTACATATATTCT+TGG - Chr5:28647846-28647865 MsG0580025983.01.T01:intron 30.0%
TAAATCAGGGAATGAAAACA+GGG - Chr5:28650710-28650729 MsG0580025983.01.T01:CDS 30.0%
TAGATAGATATGGTATCAAG+TGG + Chr5:28651757-28651776 None:intergenic 30.0%
TAGTGGGATTCTGTTATATA+TGG + Chr5:28651788-28651807 None:intergenic 30.0%
TATAGATACGAGATCACATA+AGG + Chr5:28652764-28652783 None:intergenic 30.0%
TGAGGAAAAAGAATAGAGAT+GGG - Chr5:28652940-28652959 MsG0580025983.01.T01:intron 30.0%
TGATCCTTGCATCAATTTAT+CGG + Chr5:28649978-28649997 None:intergenic 30.0%
TGTAGTTGAGAAAATCCAAT+TGG - Chr5:28652488-28652507 MsG0580025983.01.T01:intron 30.0%
TGTTAAACTGAAACTTGACA+TGG + Chr5:28653477-28653496 None:intergenic 30.0%
TTATGGAAGTTTCAATCAGT+AGG + Chr5:28652173-28652192 None:intergenic 30.0%
! AAAAGGAGAAACAGTTTTTG+GGG - Chr5:28652882-28652901 MsG0580025983.01.T01:intron 30.0%
! AATGATGCAATTTTCGTCTT+TGG - Chr5:28652793-28652812 MsG0580025983.01.T01:intron 30.0%
! AGATTTCCTGTTTTCACTTT+TGG + Chr5:28649245-28649264 None:intergenic 30.0%
! ATCGTTAAGTCAGCTTATTT+TGG + Chr5:28649318-28649337 None:intergenic 30.0%
! ATGCTACTGAGTTTTTAACA+AGG + Chr5:28653536-28653555 None:intergenic 30.0%
! ATTGGCTGTCACTAATATTT+TGG - Chr5:28648623-28648642 MsG0580025983.01.T01:intron 30.0%
! CAGATCAGATGAATTTTATG+AGG - Chr5:28652922-28652941 MsG0580025983.01.T01:intron 30.0%
! GCAAAAGTTGTTGATTACAA+TGG + Chr5:28653159-28653178 None:intergenic 30.0%
! GTATTAGGAAGGTATGAAAA+GGG - Chr5:28650982-28651001 MsG0580025983.01.T01:CDS 30.0%
! TACTTTTACTGTCAACAAAC+GGG + Chr5:28649803-28649822 None:intergenic 30.0%
! TGTATTAGGAAGGTATGAAA+AGG - Chr5:28650981-28651000 MsG0580025983.01.T01:CDS 30.0%
!! ATCTTGATGGATTTATTGGA+CGG - Chr5:28651114-28651133 MsG0580025983.01.T01:intron 30.0%
!! CCCTTAATATCTAGCTTTAA+AGG + Chr5:28651474-28651493 None:intergenic 30.0%
!! CCCTTTAAAGCTAGATATTA+AGG - Chr5:28651470-28651489 MsG0580025983.01.T01:CDS 30.0%
!! TCATGTGGTACTTTTTATTG+AGG - Chr5:28650095-28650114 MsG0580025983.01.T01:intron 30.0%
!! TCGATTTGGAAATCATACAA+GGG - Chr5:28650934-28650953 MsG0580025983.01.T01:CDS 30.0%
!! TGGTACAATTGTTATTTCCT+AGG - Chr5:28653211-28653230 MsG0580025983.01.T01:intron 30.0%
!!! AGAGAGACCAGATTTTTTTT+GGG - Chr5:28651289-28651308 MsG0580025983.01.T01:intron 30.0%
!!! AGAGGGTCTATATACTTTTT+TGG - Chr5:28651148-28651167 MsG0580025983.01.T01:intron 30.0%
!!! CAATGCAAACAGTTTTAAGT+AGG - Chr5:28647828-28647847 MsG0580025983.01.T01:intron 30.0%
!!! TCTATATACTTTTTTGGTGG+TGG - Chr5:28651154-28651173 MsG0580025983.01.T01:intron 30.0%
AAAAGTGGAGAGGTTATAGA+GGG - Chr5:28652450-28652469 MsG0580025983.01.T01:intron 35.0%
AACGAAGGAGAATCTATTCA+AGG - Chr5:28651995-28652014 MsG0580025983.01.T01:intron 35.0%
AACTGAAGTCTTTAGCTAAG+CGG - Chr5:28652081-28652100 MsG0580025983.01.T01:intron 35.0%
AAGAATGTGAGTTTGAGTGT+GGG + Chr5:28647273-28647292 None:intergenic 35.0%
ACATTATGCGCAGTAAAAAG+AGG - Chr5:28649601-28649620 MsG0580025983.01.T01:intron 35.0%
AGCAATAGCTTCCATATTAC+TGG + Chr5:28649763-28649782 None:intergenic 35.0%
AGCAATTGCGTTCTTCAATT+TGG - Chr5:28649902-28649921 MsG0580025983.01.T01:intron 35.0%
AGCTAAAGACTTCAGTTTGT+AGG + Chr5:28652078-28652097 None:intergenic 35.0%
AGCTAAATCTTTCTTCAGCA+AGG + Chr5:28652227-28652246 None:intergenic 35.0%
AGGCATAAAGATCATATCAG+GGG - Chr5:28652015-28652034 MsG0580025983.01.T01:intron 35.0%
AGTTGAGAAAATCCAATTGG+AGG - Chr5:28652491-28652510 MsG0580025983.01.T01:intron 35.0%
ATAACATATCAGATCAGCCA+TGG + Chr5:28651096-28651115 None:intergenic 35.0%
ATCATTGTACTGAAGTACGA+AGG - Chr5:28650771-28650790 MsG0580025983.01.T01:intron 35.0%
ATGCAAGGATCAGTATATCA+GGG - Chr5:28649986-28650005 MsG0580025983.01.T01:intron 35.0%
ATTACATGTCTGAGTCATGT+CGG + Chr5:28647913-28647932 None:intergenic 35.0%
ATTCAGTCAGAACTCAGAAT+GGG + Chr5:28652843-28652862 None:intergenic 35.0%
ATTGTCTCAAATTGAAGCTG+TGG - Chr5:28648313-28648332 MsG0580025983.01.T01:intron 35.0%
ATTTATTGGACGGTTAGAGA+AGG - Chr5:28651124-28651143 MsG0580025983.01.T01:intron 35.0%
ATTTCTGCCTTCAAATACTC+AGG - Chr5:28650216-28650235 MsG0580025983.01.T01:intron 35.0%
CAAAAAAAATCTGGTCTCTC+TGG + Chr5:28651290-28651309 None:intergenic 35.0%
CAAAATGTTGAGAGAAATCC+AGG + Chr5:28650410-28650429 None:intergenic 35.0%
CAAGGCATAAAGATCATATC+AGG - Chr5:28652013-28652032 MsG0580025983.01.T01:intron 35.0%
CAGTACAATGATAGCTGTAA+AGG + Chr5:28650763-28650782 None:intergenic 35.0%
CATTATGCGCAGTAAAAAGA+GGG - Chr5:28649602-28649621 MsG0580025983.01.T01:intron 35.0%
CATTCCATACTTCTCGAAAT+GGG - Chr5:28651527-28651546 MsG0580025983.01.T01:intron 35.0%
CCAAAGAGGAAAATTAGAGA+AGG + Chr5:28651853-28651872 None:intergenic 35.0%
CCCAGGATAAAGAGATAAAT+TGG + Chr5:28650182-28650201 None:intergenic 35.0%
CTTTCTCTCAACTTTATCCA+TGG + Chr5:28647957-28647976 None:intergenic 35.0%
GCCAAATATTCCTATTTCGT+AGG - Chr5:28651188-28651207 MsG0580025983.01.T01:intron 35.0%
GCCAATTTATCTCTTTATCC+TGG - Chr5:28650178-28650197 MsG0580025983.01.T01:intron 35.0%
GCCTACGAAATAGGAATATT+TGG + Chr5:28651192-28651211 None:intergenic 35.0%
GCTAAAGACTTCAGTTTGTA+GGG + Chr5:28652077-28652096 None:intergenic 35.0%
GCTATGGAATTCTACATATG+TGG + Chr5:28650912-28650931 None:intergenic 35.0%
GCTTACCACACTTATAGATT+TGG + Chr5:28648676-28648695 None:intergenic 35.0%
GGAAGAGAGTTACTAGATTT+GGG - Chr5:28652814-28652833 MsG0580025983.01.T01:intron 35.0%
GGAGATTTCCCAAAGTAATT+GGG + Chr5:28651452-28651471 None:intergenic 35.0%
GGGTGATTAGTAGATAGATA+TGG + Chr5:28651767-28651786 None:intergenic 35.0%
GTAAAAAGAGGGATAAGTTG+TGG - Chr5:28649613-28649632 MsG0580025983.01.T01:intron 35.0%
GTCAATACGAACATAACTGA+AGG - Chr5:28651406-28651425 MsG0580025983.01.T01:intron 35.0%
GTGTAACCAAAAGTGAAAAC+AGG - Chr5:28649236-28649255 MsG0580025983.01.T01:intron 35.0%
GTTCACATCAGAACATGATA+GGG + Chr5:28651579-28651598 None:intergenic 35.0%
TAAGAATGTGAGTTTGAGTG+TGG + Chr5:28647274-28647293 None:intergenic 35.0%
TACATGTTCAGAGAGTTACT+TGG - Chr5:28650156-28650175 MsG0580025983.01.T01:intron 35.0%
TATGGTTGTCAGTTTGTAAG+TGG + Chr5:28651374-28651393 None:intergenic 35.0%
TATTGAAATGCTTACAGGCA+TGG - Chr5:28653584-28653603 MsG0580025983.01.T01:CDS 35.0%
TCAAATTGGCACGAGAATTA+TGG - Chr5:28652582-28652601 MsG0580025983.01.T01:intron 35.0%
TCTTCTTTGTTCGCTCAAAT+TGG - Chr5:28652568-28652587 MsG0580025983.01.T01:intron 35.0%
TGAGTATTTGAAGGCAGAAA+TGG + Chr5:28650217-28650236 None:intergenic 35.0%
TGGAAGAGAGTTACTAGATT+TGG - Chr5:28652813-28652832 MsG0580025983.01.T01:intron 35.0%
TGGAATTCTACATATGTGGT+TGG + Chr5:28650908-28650927 None:intergenic 35.0%
TGGGCTTACACATACATATA+TGG - Chr5:28651899-28651918 MsG0580025983.01.T01:intron 35.0%
TGGTTGTAAAATTACTGCCT+AGG + Chr5:28653231-28653250 None:intergenic 35.0%
TGTCACAATGCTTCTAATCT+TGG - Chr5:28650380-28650399 MsG0580025983.01.T01:intron 35.0%
TTACAACCACTTGGAGATAA+AGG - Chr5:28653242-28653261 MsG0580025983.01.T01:intron 35.0%
TTGTTATAAGCCGCGAATTA+AGG + Chr5:28647672-28647691 None:intergenic 35.0%
TTTCTGCACTTTATGATGCT+CGG + Chr5:28651601-28651620 None:intergenic 35.0%
! AGTTTTCATATGGTCCTACT+AGG + Chr5:28652333-28652352 None:intergenic 35.0%
! ATTAACTTTTATCAGGGCGT+GGG - Chr5:28649829-28649848 MsG0580025983.01.T01:intron 35.0%
! CCTTCTCTAATTTTCCTCTT+TGG - Chr5:28651850-28651869 MsG0580025983.01.T01:intron 35.0%
! GAACAGGTTGACAGAATATA+GGG - Chr5:28651955-28651974 MsG0580025983.01.T01:intron 35.0%
! GCAGTAATTTTACAACCACT+TGG - Chr5:28653233-28653252 MsG0580025983.01.T01:intron 35.0%
! GGAAACTGTTTAGAGTAATC+AGG - Chr5:28652961-28652980 MsG0580025983.01.T01:intron 35.0%
! GGATTTCTCTCAACATTTTG+TGG - Chr5:28650410-28650429 MsG0580025983.01.T01:intron 35.0%
! GGTTAGTTATTAGTTGGTGT+TGG + Chr5:28648083-28648102 None:intergenic 35.0%
! GTACAGAACAAGAAAGTACA+TGG + Chr5:28649498-28649517 None:intergenic 35.0%
! GTCATGATTAGCCAGTAATA+TGG - Chr5:28649749-28649768 MsG0580025983.01.T01:intron 35.0%
! GTTTTCATATGGTCCTACTA+GGG + Chr5:28652332-28652351 None:intergenic 35.0%
! TATCAGGGTGTTATGAAATC+TGG - Chr5:28650001-28650020 MsG0580025983.01.T01:intron 35.0%
! TATTAACTTTTATCAGGGCG+TGG - Chr5:28649828-28649847 MsG0580025983.01.T01:intron 35.0%
! TTTTCATATGGTCCTACTAG+GGG + Chr5:28652331-28652350 None:intergenic 35.0%
! TTTTTATGGCTGGCATTAAG+TGG - Chr5:28652126-28652145 MsG0580025983.01.T01:intron 35.0%
!! AAAAGTGTGAACGCTGTTTT+TGG + Chr5:28647323-28647342 None:intergenic 35.0%
!! AGACCTCTTAACTTTAGGAT+TGG - Chr5:28648605-28648624 MsG0580025983.01.T01:intron 35.0%
!! CTCGATTTGGAAATCATACA+AGG - Chr5:28650933-28650952 MsG0580025983.01.T01:CDS 35.0%
!! GGAATCATCTAGTTTGTTAG+AGG + Chr5:28651736-28651755 None:intergenic 35.0%
!! TCAGTTGGTGAAATGAAAAG+TGG - Chr5:28652435-28652454 MsG0580025983.01.T01:intron 35.0%
!!! CAGAGAGACCAGATTTTTTT+TGG - Chr5:28651288-28651307 MsG0580025983.01.T01:intron 35.0%
!!! GAACCTGAGTCTCTTTTTTA+TGG - Chr5:28652112-28652131 MsG0580025983.01.T01:intron 35.0%
!!! GGGTCTATATACTTTTTTGG+TGG - Chr5:28651151-28651170 MsG0580025983.01.T01:intron 35.0%
!!! GTTTGACTCTGAAACGTTTT+TGG + Chr5:28650485-28650504 None:intergenic 35.0%
!!! TAATAGGCTTGTTTTTGTCC+AGG - Chr5:28649343-28649362 MsG0580025983.01.T01:intron 35.0%
!!! TAGTTGGTCTCTTTTTCAGT+TGG - Chr5:28652420-28652439 MsG0580025983.01.T01:intron 35.0%
AAACATCGCAGCTAAGTCAT+TGG + Chr5:28651237-28651256 None:intergenic 40.0%
AAAGTGGAGAGGTTATAGAG+GGG - Chr5:28652451-28652470 MsG0580025983.01.T01:intron 40.0%
AAGTCCCATTTCGAGAAGTA+TGG + Chr5:28651534-28651553 None:intergenic 40.0%
ACAAACACAGACACAAACAC+TGG + Chr5:28648262-28648281 None:intergenic 40.0%
ACAAACTGACAACCATACAG+AGG - Chr5:28651377-28651396 MsG0580025983.01.T01:intron 40.0%
ACATATGTGGTTGGAATTCG+TGG + Chr5:28650899-28650918 None:intergenic 40.0%
ACGTCTTCGATCTCAAGTAT+CGG + Chr5:28648381-28648400 None:intergenic 40.0%
AGAATGTGAGTTTGAGTGTG+GGG + Chr5:28647272-28647291 None:intergenic 40.0%
AGGTTTCACTACTTCTGATC+AGG - Chr5:28653295-28653314 MsG0580025983.01.T01:intron 40.0%
ATCAGAACATGATAGGGACT+TGG + Chr5:28651573-28651592 None:intergenic 40.0%
ATCAGGTAGAAAATCGCGTT+TGG + Chr5:28647399-28647418 None:intergenic 40.0%
ATCCAATTGGAGGAGAGTTT+AGG - Chr5:28652501-28652520 MsG0580025983.01.T01:intron 40.0%
ATGCCAAGTAAGCTAACAAG+TGG + Chr5:28649458-28649477 None:intergenic 40.0%
ATGCTCAATTGGACAAACGA+AGG - Chr5:28651980-28651999 MsG0580025983.01.T01:intron 40.0%
ATGGAACAAGCAGTTTCTGA+TGG - Chr5:28651317-28651336 MsG0580025983.01.T01:intron 40.0%
ATGGCTAATGCCTACGAAAT+AGG + Chr5:28651201-28651220 None:intergenic 40.0%
CAATGTATTACACGGATACG+TGG + Chr5:28648416-28648435 None:intergenic 40.0%
CAGCCAATCCTAAAGTTAAG+AGG + Chr5:28648611-28648630 None:intergenic 40.0%
CAGCCATAAAAAAGAGACTC+AGG + Chr5:28652118-28652137 None:intergenic 40.0%
CATTAAGTGGTTGAGAGACT+AGG - Chr5:28652139-28652158 MsG0580025983.01.T01:intron 40.0%
CCATTCCATACTTCTCGAAA+TGG - Chr5:28651526-28651545 MsG0580025983.01.T01:intron 40.0%
CGCAATACCTGAGTATTTGA+AGG + Chr5:28650226-28650245 None:intergenic 40.0%
CTCAAATTGAAGCTGTGGTT+AGG - Chr5:28648318-28648337 MsG0580025983.01.T01:intron 40.0%
GAAAACAGAGCAGTTTCAAG+AGG + Chr5:28653011-28653030 None:intergenic 40.0%
GAAAAGTGGAGAGGTTATAG+AGG - Chr5:28652449-28652468 MsG0580025983.01.T01:intron 40.0%
GAAGTAGACCATGAGTAAGT+TGG - Chr5:28650850-28650869 MsG0580025983.01.T01:intron 40.0%
GAATTCCATAGCTCTCGATT+TGG - Chr5:28650920-28650939 MsG0580025983.01.T01:CDS 40.0%
GACACCGATAAATTGATGCA+AGG - Chr5:28649971-28649990 MsG0580025983.01.T01:intron 40.0%
GACTTAACGATGCCGATAAT+AGG - Chr5:28649327-28649346 MsG0580025983.01.T01:intron 40.0%
GAGAAGGGATAGTTAGTTAC+AGG + Chr5:28651837-28651856 None:intergenic 40.0%
GATGCAAGGATCAGTATATC+AGG - Chr5:28649985-28650004 MsG0580025983.01.T01:intron 40.0%
GATGGTTCGATTGAAGAGTA+CGG + Chr5:28647489-28647508 None:intergenic 40.0%
GATTCAGTCAGAACTCAGAA+TGG + Chr5:28652844-28652863 None:intergenic 40.0%
GATTTCCAAATCGAGAGCTA+TGG + Chr5:28650928-28650947 None:intergenic 40.0%
GCAATTCCTTTATCTCCAAG+TGG + Chr5:28653251-28653270 None:intergenic 40.0%
GCTAGACTGCAAGAATACTT+GGG - Chr5:28652381-28652400 MsG0580025983.01.T01:intron 40.0%
GGATAGTTAGTTACAGGAGA+GGG + Chr5:28651831-28651850 None:intergenic 40.0%
GGGAGATTTCCCAAAGTAAT+TGG + Chr5:28651453-28651472 None:intergenic 40.0%
GGTTCACATCAGAACATGAT+AGG + Chr5:28651580-28651599 None:intergenic 40.0%
GTATAACATGTAGGCTCGAA+AGG + Chr5:28653374-28653393 None:intergenic 40.0%
GTTATGAAACATGGCATCCA+TGG - Chr5:28647937-28647956 MsG0580025983.01.T01:intron 40.0%
GTTGTCAGTTTGTAAGTGGT+AGG + Chr5:28651370-28651389 None:intergenic 40.0%
TACCTAACATGTTCCCTCTA+AGG - Chr5:28651922-28651941 MsG0580025983.01.T01:intron 40.0%
TACCTTAGAGGGAACATGTT+AGG + Chr5:28651927-28651946 None:intergenic 40.0%
TACTTCTCGAAATGGGACTT+AGG - Chr5:28651534-28651553 MsG0580025983.01.T01:intron 40.0%
TATAAGATACTATCCCCGGA+TGG - Chr5:28651048-28651067 MsG0580025983.01.T01:intron 40.0%
TATGCACGGCGAGATATAAT+TGG - Chr5:28649095-28649114 MsG0580025983.01.T01:intron 40.0%
TCAGAACATGATAGGGACTT+GGG + Chr5:28651572-28651591 None:intergenic 40.0%
TCAGGTAGAAAATCGCGTTT+GGG + Chr5:28647398-28647417 None:intergenic 40.0%
TGAAGCTGTGGTTAGGTATT+GGG - Chr5:28648325-28648344 MsG0580025983.01.T01:intron 40.0%
TGAGTAAAGGCCTTAATTCG+CGG - Chr5:28647659-28647678 MsG0580025983.01.T01:intron 40.0%
TGCTAGACTGCAAGAATACT+TGG - Chr5:28652380-28652399 MsG0580025983.01.T01:intron 40.0%
TGGTGAAATGAAAAGTGGAG+AGG - Chr5:28652440-28652459 MsG0580025983.01.T01:intron 40.0%
TTCGCCTATTCTACCTTAGA+GGG + Chr5:28651938-28651957 None:intergenic 40.0%
TTGAAGCTGTGGTTAGGTAT+TGG - Chr5:28648324-28648343 MsG0580025983.01.T01:intron 40.0%
TTGAGACAGATCCTTCTAGA+CGG - Chr5:28650433-28650452 MsG0580025983.01.T01:intron 40.0%
TTTGTCCAGGTAAATCCTCA+GGG - Chr5:28649356-28649375 MsG0580025983.01.T01:intron 40.0%
! AACAAGAAAGTACATGGCCA+AGG + Chr5:28649492-28649511 None:intergenic 40.0%
! AACAGAATGCCGACTATAGT+TGG - Chr5:28652404-28652423 MsG0580025983.01.T01:intron 40.0%
! AACGCGATTTTCTACCTGAT+TGG - Chr5:28647399-28647418 MsG0580025983.01.T01:intron 40.0%
! ACAAGAAAGTACATGGCCAA+GGG + Chr5:28649491-28649510 None:intergenic 40.0%
! ACGCGATTTTCTACCTGATT+GGG - Chr5:28647400-28647419 MsG0580025983.01.T01:intron 40.0%
! AGAAAGGCACAAATGGTAGT+GGG + Chr5:28651804-28651823 None:intergenic 40.0%
! AGCTGTAAAGGTCATCCTTT+TGG + Chr5:28650751-28650770 None:intergenic 40.0%
! ATCTCGCCGTGCATATATTT+TGG + Chr5:28649090-28649109 None:intergenic 40.0%
! CAGGCATGGATTACCTATAT+CGG - Chr5:28653598-28653617 MsG0580025983.01.T01:CDS 40.0%
! CCATTTCGAGAAGTATGGAA+TGG + Chr5:28651529-28651548 None:intergenic 40.0%
! CGAACAGGTTGACAGAATAT+AGG - Chr5:28651954-28651973 MsG0580025983.01.T01:intron 40.0%
! GTTTTATGGAAAGCCAAACG+AGG + Chr5:28648653-28648672 None:intergenic 40.0%
! TCATATCAGGGGTGTGTATT+AGG - Chr5:28650967-28650986 MsG0580025983.01.T01:CDS 40.0%
! TGTCCACTTGTTAGCTTACT+TGG - Chr5:28649452-28649471 MsG0580025983.01.T01:intron 40.0%
! TTCGAGAAGTATGGAATGGT+CGG + Chr5:28651525-28651544 None:intergenic 40.0%
! TTGTTAGAGGCAGAAAGCAT+TGG + Chr5:28651723-28651742 None:intergenic 40.0%
! TTTTGTCCAGGTAAATCCTC+AGG - Chr5:28649355-28649374 MsG0580025983.01.T01:intron 40.0%
!! CTCGCAAAGTTGTTTTGCAT+TGG + Chr5:28650600-28650619 None:intergenic 40.0%
!! TGTTCCCTCTAAGGTAGAAT+AGG - Chr5:28651931-28651950 MsG0580025983.01.T01:intron 40.0%
!!! CTGAGTCTCTTTTTTATGGC+TGG - Chr5:28652116-28652135 MsG0580025983.01.T01:intron 40.0%
!!! CTTCCTCGGTTCTTTTTTCT+GGG - Chr5:28653092-28653111 MsG0580025983.01.T01:intron 40.0%
!!! GCTGTCACTAATATTTTGGC+TGG - Chr5:28648627-28648646 MsG0580025983.01.T01:intron 40.0%
!!! GTTTTGAAGTGCGATTCGAA+AGG + Chr5:28647301-28647320 None:intergenic 40.0%
!!! TTCCTCGGTTCTTTTTTCTG+GGG - Chr5:28653093-28653112 MsG0580025983.01.T01:intron 40.0%
AAACGGCACCAACGTAGATT+GGG + Chr5:28647457-28647476 None:intergenic 45.0%
AAAGGCTGAAGCTTACCATC+CGG + Chr5:28651066-28651085 None:intergenic 45.0%
AAAGTACATGGCCAAGGGAT+GGG + Chr5:28649486-28649505 None:intergenic 45.0%
AACAAGCAGTTTCTGATGGC+AGG - Chr5:28651321-28651340 MsG0580025983.01.T01:intron 45.0%
AACTGACAACCATACAGAGG+TGG - Chr5:28651380-28651399 MsG0580025983.01.T01:intron 45.0%
AAGAGGGATAAGTTGTGGCT+TGG - Chr5:28649618-28649637 MsG0580025983.01.T01:intron 45.0%
AAGTGGAGAGGTTATAGAGG+GGG - Chr5:28652452-28652471 MsG0580025983.01.T01:intron 45.0%
AATAACAAGTGATCGGCAGC+AGG + Chr5:28649873-28649892 None:intergenic 45.0%
ACTTGAGATCGAAGACGTGT+TGG - Chr5:28648383-28648402 MsG0580025983.01.T01:intron 45.0%
AGAACCGAGGAAGGAATAGA+AGG + Chr5:28653085-28653104 None:intergenic 45.0%
AGAGCAGTTTCAAGAGGTCT+GGG + Chr5:28653005-28653024 None:intergenic 45.0%
AGGCAATAATGAACGCCAGT+CGG + Chr5:28651350-28651369 None:intergenic 45.0%
ATAGGGACTTGGGTATCATG+AGG + Chr5:28651562-28651581 None:intergenic 45.0%
ATCAGCCATGGAATACGCAA+AGG + Chr5:28651084-28651103 None:intergenic 45.0%
ATCCAGCTTCTCTCCGATAT+AGG + Chr5:28653614-28653633 None:intergenic 45.0%
ATTGACTGACCACCTCTGTA+TGG + Chr5:28651392-28651411 None:intergenic 45.0%
CACGACACAAATACTGACAC+TGG + Chr5:28648139-28648158 None:intergenic 45.0%
CAGGTAGAAAATCGCGTTTG+GGG + Chr5:28647397-28647416 None:intergenic 45.0%
CCAGAAAAAAGAACCGAGGA+AGG + Chr5:28653094-28653113 None:intergenic 45.0%
CCAGGTGTACAAGATTACGA+GGG + Chr5:28652528-28652547 None:intergenic 45.0%
CGAGCAGACCTCTTAACTTT+AGG - Chr5:28648600-28648619 MsG0580025983.01.T01:intron 45.0%
CTAAGGTAGAATAGGCGAAC+AGG - Chr5:28651939-28651958 MsG0580025983.01.T01:intron 45.0%
CTACATAGGAGGGAATCGTT+GGG + Chr5:28652263-28652282 None:intergenic 45.0%
CTCTTCAATCGAACCATCTC+CGG - Chr5:28647491-28647510 MsG0580025983.01.T01:intron 45.0%
CTGAGGAGCTTAGCTCAATT+GGG + Chr5:28651696-28651715 None:intergenic 45.0%
CTGGAGCGAGGAAATTGTTA+AGG - Chr5:28650795-28650814 MsG0580025983.01.T01:intron 45.0%
CTTGAGATCGAAGACGTGTT+GGG - Chr5:28648384-28648403 MsG0580025983.01.T01:intron 45.0%
GAATGTGAGTTTGAGTGTGG+GGG + Chr5:28647271-28647290 None:intergenic 45.0%
GACCTAAACTCTCCTCCAAT+TGG + Chr5:28652506-28652525 None:intergenic 45.0%
GAGAGAAAATGAGAACCTGC+CGG + Chr5:28647537-28647556 None:intergenic 45.0%
GCTACTATAGTGCACTCATG+TGG - Chr5:28650080-28650099 MsG0580025983.01.T01:intron 45.0%
GCTTCTAATCTTGGAAGTCC+TGG - Chr5:28650389-28650408 MsG0580025983.01.T01:intron 45.0%
GGGATAGTTAGTTACAGGAG+AGG + Chr5:28651832-28651851 None:intergenic 45.0%
GTAGCCTTCTATTCCTTCCT+CGG - Chr5:28653078-28653097 MsG0580025983.01.T01:intron 45.0%
GTTCGCCTATTCTACCTTAG+AGG + Chr5:28651939-28651958 None:intergenic 45.0%
TACATAGGAGGGAATCGTTG+GGG + Chr5:28652262-28652281 None:intergenic 45.0%
TACCTATATCGGAGAGAAGC+TGG - Chr5:28653609-28653628 MsG0580025983.01.T01:CDS 45.0%
TCCAGGTGTACAAGATTACG+AGG + Chr5:28652529-28652548 None:intergenic 45.0%
TCTGAGGAGCTTAGCTCAAT+TGG + Chr5:28651697-28651716 None:intergenic 45.0%
TGAGACAGATCCTTCTAGAC+GGG - Chr5:28650434-28650453 MsG0580025983.01.T01:intron 45.0%
TGTACTGAAGTACGAAGGAC+TGG - Chr5:28650776-28650795 MsG0580025983.01.T01:intron 45.0%
TGTCAGTCTCACGAATGCTT+TGG - Chr5:28647782-28647801 MsG0580025983.01.T01:intron 45.0%
TGTGTAAGCCCAATTGTCCT+AGG + Chr5:28651891-28651910 None:intergenic 45.0%
TTCAGCCTTTGCGTATTCCA+TGG - Chr5:28651076-28651095 MsG0580025983.01.T01:intron 45.0%
TTCTTGCATTCAACTCCCTG+AGG + Chr5:28649374-28649393 None:intergenic 45.0%
TTGCTGCAGAATCTTCTCCT+GGG - Chr5:28649927-28649946 MsG0580025983.01.T01:intron 45.0%
TTTGCTGCAGAATCTTCTCC+TGG - Chr5:28649926-28649945 MsG0580025983.01.T01:intron 45.0%
! AAAATCGCGTTTGGGGTTTG+GGG + Chr5:28647390-28647409 None:intergenic 45.0%
! AGAAAATCGCGTTTGGGGTT+TGG + Chr5:28647392-28647411 None:intergenic 45.0%
! ATCAGGGGTGTGTATTAGGA+AGG - Chr5:28650971-28650990 MsG0580025983.01.T01:CDS 45.0%
! GAAAATCGCGTTTGGGGTTT+GGG + Chr5:28647391-28647410 None:intergenic 45.0%
! GAGAAAGGCACAAATGGTAG+TGG + Chr5:28651805-28651824 None:intergenic 45.0%
! TCTTAGTTGTGTCGATGCCT+TGG - Chr5:28648777-28648796 MsG0580025983.01.T01:intron 45.0%
! TTTCAAGAGGTCTGGGACAA+GGG + Chr5:28652998-28653017 None:intergenic 45.0%
!! AGGAGAAACAGTTTTTGGGG+TGG - Chr5:28652885-28652904 MsG0580025983.01.T01:intron 45.0%
!! ATTGGTGGTGACACAATTCG+AGG - Chr5:28653275-28653294 MsG0580025983.01.T01:intron 45.0%
!! CACAAGTGTAGGTGTTGAGT+TGG + Chr5:28648192-28648211 None:intergenic 45.0%
!! CAGAAAGCATTGGTTCTCTG+AGG + Chr5:28651713-28651732 None:intergenic 45.0%
!!! ATATTTTGGCTGGCCTCGTT+TGG - Chr5:28648637-28648656 MsG0580025983.01.T01:intron 45.0%
!!! CCTTCCTCGGTTCTTTTTTC+TGG - Chr5:28653091-28653110 MsG0580025983.01.T01:intron 45.0%
!!! GAGAAACAGTTTTTGGGGTG+GGG - Chr5:28652887-28652906 MsG0580025983.01.T01:intron 45.0%
!!! GGAGAAACAGTTTTTGGGGT+GGG - Chr5:28652886-28652905 MsG0580025983.01.T01:intron 45.0%
!!! TCGTTTTGAGAGACCCAATC+AGG + Chr5:28647416-28647435 None:intergenic 45.0%
!!! TTCTTTTTTCTGGGGTGAGG+CGG - Chr5:28653101-28653120 MsG0580025983.01.T01:intron 45.0%
AAATGAGAACCTGCCGGCAT+CGG + Chr5:28647531-28647550 None:intergenic 50.0%
AAGGCTGAAGCTTACCATCC+GGG + Chr5:28651065-28651084 None:intergenic 50.0%
AAGTACATGGCCAAGGGATG+GGG + Chr5:28649485-28649504 None:intergenic 50.0%
AATCGTTGGGGACATGCTTG+AGG + Chr5:28652250-28652269 None:intergenic 50.0%
ACCAAACACAGAGCAAGCCA+AGG + Chr5:28648797-28648816 None:intergenic 50.0%
AGATCCTTCTAGACGGGTCA+GGG - Chr5:28650440-28650459 MsG0580025983.01.T01:intron 50.0%
ATCTGGTCTCTCTGGCACAA+TGG + Chr5:28651282-28651301 None:intergenic 50.0%
CAACTCCCTGAGGATTTACC+TGG + Chr5:28649364-28649383 None:intergenic 50.0%
CAAGTGGGCCTAGGACAATT+GGG - Chr5:28651880-28651899 MsG0580025983.01.T01:intron 50.0%
CACCCCAGAAAAAAGAACCG+AGG + Chr5:28653098-28653117 None:intergenic 50.0%
CAGAGCAGTTTCAAGAGGTC+TGG + Chr5:28653006-28653025 None:intergenic 50.0%
CCCTCGTAATCTTGTACACC+TGG - Chr5:28652525-28652544 MsG0580025983.01.T01:intron 50.0%
CTCTTTGGACGACTCCAAGT+GGG - Chr5:28651865-28651884 MsG0580025983.01.T01:intron 50.0%
GAAACGGCACCAACGTAGAT+TGG + Chr5:28647458-28647477 None:intergenic 50.0%
GAGTACGGCGAAGAGAGAAA+CGG + Chr5:28647474-28647493 None:intergenic 50.0%
GCAGAATCTTCTCCTGGGAA+TGG - Chr5:28649932-28649951 MsG0580025983.01.T01:intron 50.0%
GCTACATAGGAGGGAATCGT+TGG + Chr5:28652264-28652283 None:intergenic 50.0%
GCTCATCAGGCTACATAGGA+GGG + Chr5:28652273-28652292 None:intergenic 50.0%
GGCAATAATGAACGCCAGTC+GGG + Chr5:28651349-28651368 None:intergenic 50.0%
TACAGGAGAGGGTGAGAGAA+AGG + Chr5:28651820-28651839 None:intergenic 50.0%
TCAGGGAATGAAAACAGGGC+TGG - Chr5:28650714-28650733 MsG0580025983.01.T01:CDS 50.0%
! AGGGATAAGTTGTGGCTTGG+AGG - Chr5:28649621-28649640 MsG0580025983.01.T01:intron 50.0%
! CTGGTGATGCTCTCTCCAAA+AGG - Chr5:28650733-28650752 MsG0580025983.01.T01:intron 50.0%
! GAAAGTACATGGCCAAGGGA+TGG + Chr5:28649487-28649506 None:intergenic 50.0%
! GAGAAGTATGGAATGGTCGG+TGG + Chr5:28651522-28651541 None:intergenic 50.0%
! GGGTGAGAGAAAGGCACAAA+TGG + Chr5:28651811-28651830 None:intergenic 50.0%
! GTTTCAAGAGGTCTGGGACA+AGG + Chr5:28652999-28653018 None:intergenic 50.0%
! TGGCATTTTTCCCCATCCCT+TGG - Chr5:28649472-28649491 MsG0580025983.01.T01:intron 50.0%
!! CAGAAGTGTCGATGCTACAG+AGG + Chr5:28647875-28647894 None:intergenic 50.0%
!!! AACAGTTTTTGGGGTGGGGT+TGG - Chr5:28652891-28652910 MsG0580025983.01.T01:intron 50.0%
!!! ACAGTTTTTGGGGTGGGGTT+GGG - Chr5:28652892-28652911 MsG0580025983.01.T01:intron 50.0%
!!! CGGTTCTTTTTTCTGGGGTG+AGG - Chr5:28653098-28653117 MsG0580025983.01.T01:intron 50.0%
!!! GAGGCGGGTTGGTTCTTTTT+GGG - Chr5:28653117-28653136 MsG0580025983.01.T01:intron 50.0%
!!! TCTTTTTTCTGGGGTGAGGC+GGG - Chr5:28653102-28653121 MsG0580025983.01.T01:intron 50.0%
!!! TGAGGCGGGTTGGTTCTTTT+TGG - Chr5:28653116-28653135 MsG0580025983.01.T01:intron 50.0%
AAAGCCCTGACCCGTCTAGA+AGG + Chr5:28650447-28650466 None:intergenic 55.0%
AAGTACGAAGGACTGGAGCG+AGG - Chr5:28650783-28650802 MsG0580025983.01.T01:intron 55.0%
AATGGCAGCTCAGACTTCCC+AGG + Chr5:28650199-28650218 None:intergenic 55.0%
AGAGGTTATAGAGGGGGTGG+GGG - Chr5:28652458-28652477 MsG0580025983.01.T01:intron 55.0%
AGGCTGAAGCTTACCATCCG+GGG + Chr5:28651064-28651083 None:intergenic 55.0%
ATCTTCTCCTGGGAATGGCG+AGG - Chr5:28649937-28649956 MsG0580025983.01.T01:intron 55.0%
CAGATCCTTCTAGACGGGTC+AGG - Chr5:28650439-28650458 MsG0580025983.01.T01:intron 55.0%
CCAAGTGGGCCTAGGACAAT+TGG - Chr5:28651879-28651898 MsG0580025983.01.T01:intron 55.0%
CCAATTGTCCTAGGCCCACT+TGG + Chr5:28651882-28651901 None:intergenic 55.0%
CCACTTGGAGTCGTCCAAAG+AGG + Chr5:28651867-28651886 None:intergenic 55.0%
CCTCTTTGGACGACTCCAAG+TGG - Chr5:28651864-28651883 MsG0580025983.01.T01:intron 55.0%
CGCTCATCAGGCTACATAGG+AGG + Chr5:28652274-28652293 None:intergenic 55.0%
GAGAGGTTATAGAGGGGGTG+GGG - Chr5:28652457-28652476 MsG0580025983.01.T01:intron 55.0%
GCACCAACGTAGATTGGGAG+GGG + Chr5:28647452-28647471 None:intergenic 55.0%
GGACGGTTAGAGAAGGCAGA+GGG - Chr5:28651131-28651150 MsG0580025983.01.T01:intron 55.0%
GGAGAGGTTATAGAGGGGGT+GGG - Chr5:28652456-28652475 MsG0580025983.01.T01:intron 55.0%
GGCACCAACGTAGATTGGGA+GGG + Chr5:28647453-28647472 None:intergenic 55.0%
TCGCGCTCATCAGGCTACAT+AGG + Chr5:28652277-28652296 None:intergenic 55.0%
TCTCCCTGACGTTGCACGTA+CGG - Chr5:28649406-28649425 MsG0580025983.01.T01:intron 55.0%
TGGACGGTTAGAGAAGGCAG+AGG - Chr5:28651130-28651149 MsG0580025983.01.T01:intron 55.0%
TGGAGAGGTTATAGAGGGGG+TGG - Chr5:28652455-28652474 MsG0580025983.01.T01:intron 55.0%
! CTGGTGTCGAATCCCCTAGT+AGG - Chr5:28652316-28652335 MsG0580025983.01.T01:intron 55.0%
!! GCCTTGGCTTGCTCTGTGTT+TGG - Chr5:28648793-28648812 MsG0580025983.01.T01:intron 55.0%
!!! AGTTTTTGGGGTGGGGTTGG+GGG - Chr5:28652894-28652913 MsG0580025983.01.T01:intron 55.0%
!!! CAGTTTTTGGGGTGGGGTTG+GGG - Chr5:28652893-28652912 MsG0580025983.01.T01:intron 55.0%
ACCACTAGCTCGCGCTCATC+AGG + Chr5:28652286-28652305 None:intergenic 60.0%
ACGGGTCAGGGCTTTCTGCA+AGG - Chr5:28650452-28650471 MsG0580025983.01.T01:intron 60.0%
AGCTCCGTACGTGCAACGTC+AGG + Chr5:28649413-28649432 None:intergenic 60.0%
AGGGGATTCGACACCAGCTC+AGG + Chr5:28652313-28652332 None:intergenic 60.0%
AGTGAAGTGGACACGGAGCG+CGG + Chr5:28647246-28647265 None:intergenic 60.0%
CGACCCCTCCCAATCTACGT+TGG - Chr5:28647446-28647465 MsG0580025983.01.T01:intron 60.0%
CGGCACCAACGTAGATTGGG+AGG + Chr5:28647454-28647473 None:intergenic 60.0%
GAATGGCGAGGCTGCAAGTG+TGG - Chr5:28649949-28649968 MsG0580025983.01.T01:intron 60.0%
GAGGTTATAGAGGGGGTGGG+GGG - Chr5:28652459-28652478 MsG0580025983.01.T01:intron 60.0%
GAGTGTGGGGGAGAGTGAAG+TGG + Chr5:28647259-28647278 None:intergenic 60.0%
GCTAGTGGTGCAACCTGAGC+TGG - Chr5:28652297-28652316 MsG0580025983.01.T01:CDS 60.0%
GCTCCGTACGTGCAACGTCA+GGG + Chr5:28649412-28649431 None:intergenic 60.0%
GGGGGAGAGTGAAGTGGACA+CGG + Chr5:28647253-28647272 None:intergenic 60.0%
GGTCAGGGCTTTCTGCAAGG+AGG - Chr5:28650455-28650474 MsG0580025983.01.T01:intron 60.0%
TCTGATGGCAGGTACCCGAC+TGG - Chr5:28651332-28651351 MsG0580025983.01.T01:intron 60.0%
TTGCACGTACGGAGCTGCTC+TGG - Chr5:28649417-28649436 MsG0580025983.01.T01:intron 60.0%
! CGCGTTTGGGGTTTGGGGTT+CGG + Chr5:28647385-28647404 None:intergenic 60.0%
!!! TTTTCTGGGGTGAGGCGGGT+TGG - Chr5:28653106-28653125 MsG0580025983.01.T01:intron 60.0%
ATCGGCGACGGGAGCAATGC+CGG + Chr5:28647513-28647532 None:intergenic 65.0%
ATTGCTCCCGTCGCCGATGC+CGG - Chr5:28647515-28647534 MsG0580025983.01.T01:intron 65.0%
CTTGCAGCCTCGCCATTCCC+AGG + Chr5:28649947-28649966 None:intergenic 65.0%
GACGGGAGCAATGCCGGAGA+TGG + Chr5:28647507-28647526 None:intergenic 65.0%
GCCTGATGAGCGCGAGCTAG+TGG - Chr5:28652282-28652301 MsG0580025983.01.T01:CDS 65.0%
GGACGACTCCAAGTGGGCCT+AGG - Chr5:28651871-28651890 MsG0580025983.01.T01:intron 65.0%
!! AACCTGCCGGCATCGGCGAC+GGG + Chr5:28647524-28647543 None:intergenic 70.0%
!! GAACCTGCCGGCATCGGCGA+CGG + Chr5:28647525-28647544 None:intergenic 70.0%
! CTCCCGTCGCCGATGCCGGC+AGG - Chr5:28647519-28647538 MsG0580025983.01.T01:intron 80.0%
Chromosome Type Strat End Strand Name
Chr5 gene 28647230 28653678 28647230 ID=MsG0580025983.01;Name=MsG0580025983.01
Chr5 mRNA 28647230 28653678 28647230 ID=MsG0580025983.01.T01;Parent=MsG0580025983.01;Name=MsG0580025983.01.T01;_AED=0.45;_eAED=0.46;_QI=0|0|0|1|1|1|7|0|300
Chr5 exon 28653368 28653678 28653368 ID=MsG0580025983.01.T01:exon:7004;Parent=MsG0580025983.01.T01
Chr5 exon 28652219 28652318 28652219 ID=MsG0580025983.01.T01:exon:7003;Parent=MsG0580025983.01.T01
Chr5 exon 28651470 28651543 28651470 ID=MsG0580025983.01.T01:exon:7002;Parent=MsG0580025983.01.T01
Chr5 exon 28650880 28651064 28650880 ID=MsG0580025983.01.T01:exon:7001;Parent=MsG0580025983.01.T01
Chr5 exon 28650671 28650741 28650671 ID=MsG0580025983.01.T01:exon:7000;Parent=MsG0580025983.01.T01
Chr5 exon 28647592 28647675 28647592 ID=MsG0580025983.01.T01:exon:6999;Parent=MsG0580025983.01.T01
Chr5 exon 28647230 28647307 28647230 ID=MsG0580025983.01.T01:exon:6998;Parent=MsG0580025983.01.T01
Chr5 CDS 28653368 28653678 28653368 ID=MsG0580025983.01.T01:cds;Parent=MsG0580025983.01.T01
Chr5 CDS 28652219 28652318 28652219 ID=MsG0580025983.01.T01:cds;Parent=MsG0580025983.01.T01
Chr5 CDS 28651470 28651543 28651470 ID=MsG0580025983.01.T01:cds;Parent=MsG0580025983.01.T01
Chr5 CDS 28650880 28651064 28650880 ID=MsG0580025983.01.T01:cds;Parent=MsG0580025983.01.T01
Chr5 CDS 28650671 28650741 28650671 ID=MsG0580025983.01.T01:cds;Parent=MsG0580025983.01.T01
Chr5 CDS 28647592 28647675 28647592 ID=MsG0580025983.01.T01:cds;Parent=MsG0580025983.01.T01
Chr5 CDS 28647230 28647307 28647230 ID=MsG0580025983.01.T01:cds;Parent=MsG0580025983.01.T01
Gene Sequence

>MsG0580025983.01.T01

ATGGAAGCGGGAACCGCGCTCCGTGTCCACTTCACTCTCCCCCACACTCAAACTCACATTCTTAGTTTCCTTTCGAATCGCACTTCAAAACCAAAAACAGCGTTCACACTTTTTTCTTCATCTTCTTCTAATTCTTCTGCTGTTCATAGTTTCCGAACCCCAAACCCCAAACGCGATTTTCTACCTGATTGGGTCTCTCAAAACGACGACGTTGTACGACCCCTCCCAATCTACGTTGGTGCCGTTTCTCTCTTCGCCGTACTCTTCAATCGAACCATCTCCGGCATTGCTCCCGTCGCCGATGCCGGCAGTTCTCAATCGCGAGCAGACCTCTTAACTTTAGGATTGGCTGTCACTAATATTTTGGCTGGCCTCGTTTGGCTTTCCATAAAACCCAAATCTATAAGTGTGGTAAATCCTCAGGGAGTTGAATGCAAGAAGCTGTGCACTGCTCTCCCTGACGTTGCACGTACGGAGCTGCTCTGGGCGTGGGAATCTCTGTCAGATGTCACCTGCTGCCGATCACTTGTTATTGTTTACGAGAGCAATTGCGTTCTTCAATTTGGTTTTGCTGCAGAATCTTCTCCTGGGAATGGCGAGGCTGCAAGTGTGGACACCGATAAATTGATGCAAGGATCAGTATATCAGGGTGTTATGAAATCTGGAACTCAGAGTTACTTGGCCAATTTATCTCTTTATCCTGGGAAGTCTGAGCTGCCATTTCTGCCTTCAAATACTCAGGCAGTAATTTTACAACCACTTGGAGATAAAGGAATTGCAATTATTGGTGGTGACACAATTCGAGGTTTCACTACTTCTGATCAGGCATGGATTACCTATATCGGAGAGAAGCTGGATTCTACCCTTTCAAAATATGTGAAACAACATCAGGCTCTTACTTAA

Protein sequence

>MsG0580025983.01.T01

MEAGTALRVHFTLPHTQTHILSFLSNRTSKPKTAFTLFSSSSSNSSAVHSFRTPNPKRDFLPDWVSQNDDVVRPLPIYVGAVSLFAVLFNRTISGIAPVADAGSSQSRADLLTLGLAVTNILAGLVWLSIKPKSISVVNPQGVECKKLCTALPDVARTELLWAWESLSDVTCCRSLVIVYESNCVLQFGFAAESSPGNGEAASVDTDKLMQGSVYQGVMKSGTQSYLANLSLYPGKSELPFLPSNTQAVILQPLGDKGIAIIGGDTIRGFTTSDQAWITYIGEKLDSTLSKYVKQHQALT*