Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480024008.01.T01 | XP_003631087.1 | 85.965 | 285 | 21 | 7 | 1 | 279 | 1 | 272 | 1.32E-143 | 420 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480024008.01.T01 | Q43386 | 38.889 | 144 | 52 | 4 | 35 | 172 | 24 | 137 | 1.04E-16 | 80.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480024008.01.T01 | Q1SN01 | 85.965 | 285 | 21 | 7 | 1 | 279 | 1 | 272 | 6.30e-144 | 420 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180002264.01 | MsG0480024008.01 | 0.812440 | 4.235167e-51 | 2.693164e-48 |
| MsG0380014137.01 | MsG0480024008.01 | 0.813646 | 2.303997e-51 | 1.513110e-48 |
| MsG0480019843.01 | MsG0480024008.01 | 0.832294 | 1.025902e-55 | 1.141639e-52 |
| MsG0480021490.01 | MsG0480024008.01 | 0.824074 | 9.828591e-54 | 8.615861e-51 |
| MsG0480024008.01 | MsG0680035330.01 | 0.813313 | 2.726375e-51 | 1.774399e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480024008.01.T01 | MTR_8g106980 | 85.965 | 285 | 21 | 7 | 1 | 279 | 1 | 272 | 1.60e-147 | 420 |
| MsG0480024008.01.T01 | MTR_6g079520 | 71.233 | 73 | 19 | 1 | 34 | 104 | 42 | 114 | 8.54e-25 | 103 |
| MsG0480024008.01.T01 | MTR_5g078330 | 38.994 | 159 | 67 | 4 | 35 | 183 | 13 | 151 | 1.89e-20 | 87.4 |
| MsG0480024008.01.T01 | MTR_3g065570 | 35.057 | 174 | 100 | 6 | 35 | 204 | 14 | 178 | 5.19e-14 | 69.3 |
| MsG0480024008.01.T01 | MTR_5g021730 | 44.156 | 77 | 43 | 0 | 31 | 107 | 32 | 108 | 9.56e-13 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480024008.01.T01 | AT3G18035 | 35.556 | 315 | 128 | 15 | 29 | 279 | 60 | 363 | 1.12e-24 | 103 |
| MsG0480024008.01.T01 | AT3G18035 | 35.556 | 315 | 128 | 15 | 29 | 279 | 60 | 363 | 1.32e-24 | 102 |
| MsG0480024008.01.T01 | AT1G48620 | 34.713 | 314 | 120 | 15 | 37 | 279 | 78 | 377 | 4.27e-24 | 101 |
| MsG0480024008.01.T01 | AT1G14900 | 38.889 | 144 | 52 | 4 | 35 | 172 | 24 | 137 | 1.06e-17 | 80.1 |
Find 133 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACGACCTCTTTGGGTTAA+AGG | 0.177310 | 4:-92305072 | None:intergenic |
| ATACTTCTTGGGCCGGCCTC+TGG | 0.231487 | 4:-92305412 | None:intergenic |
| TGGCCTTCCGGAGGGATTAA+TGG | 0.255647 | 4:-92305499 | None:intergenic |
| CCCACCACGGCAAGCTTCTT+AGG | 0.260962 | 4:-92305471 | None:intergenic |
| TTTGGTCTAGTATGAGATTA+GGG | 0.266856 | 4:+92305614 | MsG0480024008.01.T01:intron |
| GATACATTAGCTTCATCTTC+TGG | 0.274717 | 4:-92305372 | None:intergenic |
| GAGCCCATTGGACACAGATT+TGG | 0.290684 | 4:-92305247 | None:intergenic |
| CACCGCATCTGCATACTTCT+TGG | 0.297859 | 4:-92305424 | None:intergenic |
| TGGGCGGCCAATTGGCCTTC+CGG | 0.321471 | 4:-92305511 | None:intergenic |
| TACTTCTTGGGCCGGCCTCT+GGG | 0.324206 | 4:-92305411 | None:intergenic |
| AGCCCATTGGACACAGATTT+GGG | 0.328566 | 4:-92305246 | None:intergenic |
| AGTGCGTGTCTATCTGTCTA+TGG | 0.332408 | 4:-92304574 | None:intergenic |
| ATGAGGTTGGGCTTGGACTT+AGG | 0.336448 | 4:-92305102 | None:intergenic |
| ATTTGGTATGAGGTTGGGCT+TGG | 0.339854 | 4:-92305109 | None:intergenic |
| AAGGGAACGGTGGTGGGTAG+AGG | 0.347976 | 4:-92304733 | None:intergenic |
| ACGAAAACGGGCTGGGCATT+TGG | 0.348576 | 4:-92305126 | None:intergenic |
| CTATTGAGAGTGGGAGGTGG+AGG | 0.361661 | 4:-92305015 | None:intergenic |
| ATCACCTTTGGGCGGCCAAT+TGG | 0.362515 | 4:-92305519 | None:intergenic |
| GGAACGGTGGTGGGTAGAGG+TGG | 0.367498 | 4:-92304730 | None:intergenic |
| GGCCTTCCGGAGGGATTAAT+GGG | 0.369351 | 4:-92305498 | None:intergenic |
| TGGGCATTTGGTATGAGGTT+GGG | 0.370163 | 4:-92305114 | None:intergenic |
| ACGGTGGTGGGTAGAGGTGG+AGG | 0.374446 | 4:-92304727 | None:intergenic |
| CGGGCTGGGCATTTGGTATG+AGG | 0.389830 | 4:-92305119 | None:intergenic |
| CTGGGCATTTGGTATGAGGT+TGG | 0.395226 | 4:-92305115 | None:intergenic |
| AGGACGACCACGACCTCTTT+GGG | 0.396456 | 4:-92305079 | None:intergenic |
| GAGGACGACCACGACCTCTT+TGG | 0.397582 | 4:-92305080 | None:intergenic |
| GTGGTGGGTAGAGGTGGAGG+AGG | 0.401260 | 4:-92304724 | None:intergenic |
| GGATCAAGCAAAAGAGCAAT+AGG | 0.402385 | 4:+92304856 | MsG0480024008.01.T01:CDS |
| GGAGGTGGAGGGAGTGAGGA+AGG | 0.407024 | 4:-92305003 | None:intergenic |
| AGTGGGAGGTGGAGGGAGTG+AGG | 0.410669 | 4:-92305007 | None:intergenic |
| AGAGGGCGTGGACGTCCTCC+TGG | 0.422567 | 4:+92305195 | MsG0480024008.01.T01:CDS |
| GCAAAAGGTATGACAGTTGT+TGG | 0.432627 | 4:-92305315 | None:intergenic |
| ACAGACACCACAGCAGTTGT+AGG | 0.434532 | 4:-92305168 | None:intergenic |
| CACGTGGTGGTGAGTGAAGT+TGG | 0.448823 | 4:-92304770 | None:intergenic |
| AGAAGCTTGCCGTGGTGGGC+AGG | 0.453200 | 4:+92305475 | MsG0480024008.01.T01:CDS |
| GAGGGTGAAGGGAACGGTGG+TGG | 0.454084 | 4:-92304740 | None:intergenic |
| AACAAGGTGCTGTGTTCTGC+TGG | 0.458813 | 4:-92304913 | None:intergenic |
| GTTGGGTTGTTCGAGGGTGA+AGG | 0.465533 | 4:-92304752 | None:intergenic |
| AATCCCTCCGGAAGGCCAAT+TGG | 0.470273 | 4:+92305504 | MsG0480024008.01.T01:CDS |
| ACCGCATCTGCATACTTCTT+GGG | 0.471053 | 4:-92305423 | None:intergenic |
| GGACGACCCCGCCTTGTCGC+TGG | 0.472354 | 4:-92305450 | None:intergenic |
| ATCTGTCTATGGGGAAGGGA+AGG | 0.474510 | 4:-92304563 | None:intergenic |
| TTGTTGGGTGCGACTGCGAT+TGG | 0.477868 | 4:-92305299 | None:intergenic |
| ACAACAGAAGGAAAGGGAAC+AGG | 0.483163 | 4:-92305348 | None:intergenic |
| TGGTGGGTAGAGGTGGAGGA+GGG | 0.485584 | 4:-92304723 | None:intergenic |
| TTCACTCCTTTAACCCAAAG+AGG | 0.486192 | 4:+92305066 | MsG0480024008.01.T01:CDS |
| ACAGCAGTTGTAGGAGGAGG+AGG | 0.488445 | 4:-92305159 | None:intergenic |
| GGCCCAAATCTGTGTCCAAT+GGG | 0.489592 | 4:+92305244 | MsG0480024008.01.T01:CDS |
| CTCAACCACTTGAAATCTGC+TGG | 0.490237 | 4:+92304946 | MsG0480024008.01.T01:CDS |
| CATCTCAGCGTAAGGAGGAT+GGG | 0.490876 | 4:-92304797 | None:intergenic |
| GCGGCCAATTGGCCTTCCGG+AGG | 0.493639 | 4:-92305508 | None:intergenic |
| GTGCGTGTCTATCTGTCTAT+GGG | 0.496529 | 4:-92304573 | None:intergenic |
| GGTGGTTCCAGCGACAAGGC+GGG | 0.496767 | 4:+92305443 | MsG0480024008.01.T01:CDS |
| AGGTGGAGGAGGGAGATCAA+AGG | 0.498529 | 4:-92304713 | None:intergenic |
| CTTTGGGTTAAAGGAGTGAA+AGG | 0.498701 | 4:-92305063 | None:intergenic |
| TCCTAAGAAGCTTGCCGTGG+TGG | 0.501049 | 4:+92305470 | MsG0480024008.01.T01:CDS |
| GAGTGAAGTTGGGTTGTTCG+AGG | 0.501548 | 4:-92304759 | None:intergenic |
| AGGACGTCGTTTGAGCCCAT+TGG | 0.502539 | 4:-92305259 | None:intergenic |
| GGCAGGCCCATTAATCCCTC+CGG | 0.503501 | 4:+92305492 | MsG0480024008.01.T01:CDS |
| CGGCCAATTGGCCTTCCGGA+GGG | 0.504424 | 4:-92305507 | None:intergenic |
| TGTTGGGTGCGACTGCGATT+GGG | 0.505909 | 4:-92305298 | None:intergenic |
| CGAGAGAAACGAAAACGGGC+TGG | 0.514942 | 4:-92305134 | None:intergenic |
| TCATCTTCTGGAACAACAGA+AGG | 0.518256 | 4:-92305360 | None:intergenic |
| TTCTGGAACAACAGAAGGAA+AGG | 0.523237 | 4:-92305355 | None:intergenic |
| ACAGGAGCAGCAGCAGCAAA+AGG | 0.523324 | 4:-92305330 | None:intergenic |
| AGGGTGAAGGGAACGGTGGT+GGG | 0.527527 | 4:-92304739 | None:intergenic |
| TTGTTCGAGGGTGAAGGGAA+CGG | 0.529100 | 4:-92304746 | None:intergenic |
| TCATCTCAGCGTAAGGAGGA+TGG | 0.530449 | 4:-92304798 | None:intergenic |
| AATGGGCTCAAACGACGTCC+TGG | 0.531113 | 4:+92305261 | MsG0480024008.01.T01:CDS |
| TGTCTATCTGTCTATGGGGA+AGG | 0.536821 | 4:-92304568 | None:intergenic |
| CCTAAGAAGCTTGCCGTGGT+GGG | 0.538381 | 4:+92305471 | MsG0480024008.01.T01:CDS |
| AGGGTCGAGAGAAACGAAAA+CGG | 0.539218 | 4:-92305139 | None:intergenic |
| TCTGTCTATGGGGAAGGGAA+GGG | 0.540702 | 4:-92304562 | None:intergenic |
| TCAGATCTAACTCGATAAAG+AGG | 0.543241 | 4:+92305223 | MsG0480024008.01.T01:CDS |
| ACGTGGTGGTGAGTGAAGTT+GGG | 0.543540 | 4:-92304769 | None:intergenic |
| GAGAGAAACGAAAACGGGCT+GGG | 0.545382 | 4:-92305133 | None:intergenic |
| CAAAAGGTATGACAGTTGTT+GGG | 0.549504 | 4:-92305314 | None:intergenic |
| GAAGCACTGAAAGAGAAAGA+TGG | 0.550195 | 4:+92304835 | MsG0480024008.01.T01:CDS |
| AGGCCCAAATCTGTGTCCAA+TGG | 0.550214 | 4:+92305243 | MsG0480024008.01.T01:CDS |
| ATCAAAGGAAGTTGAGTCCA+TGG | 0.551511 | 4:-92304698 | None:intergenic |
| TATTGAGAGTGGGAGGTGGA+GGG | 0.551861 | 4:-92305014 | None:intergenic |
| GGGTCGAGAGAAACGAAAAC+GGG | 0.555283 | 4:-92305138 | None:intergenic |
| GAGGGCGTGGACGTCCTCCT+GGG | 0.559128 | 4:+92305196 | MsG0480024008.01.T01:CDS |
| TTGGGTTGTTCGAGGGTGAA+GGG | 0.559588 | 4:-92304751 | None:intergenic |
| ACCACAGCAGTTGTAGGAGG+AGG | 0.560199 | 4:-92305162 | None:intergenic |
| AGTGAAGTTGGGTTGTTCGA+GGG | 0.560599 | 4:-92304758 | None:intergenic |
| ATCTCAGCGTAAGGAGGATG+GGG | 0.561129 | 4:-92304796 | None:intergenic |
| TTGTATATCATCTCAGCGTA+AGG | 0.563264 | 4:-92304805 | None:intergenic |
| GTCTATCTGTCTATGGGGAA+GGG | 0.570093 | 4:-92304567 | None:intergenic |
| AAGGCCAATTGGCCGCCCAA+AGG | 0.570612 | 4:+92305515 | MsG0480024008.01.T01:CDS |
| GGTCACAAGTGTAAGTGTAA+TGG | 0.572100 | 4:+92304538 | None:intergenic |
| GTGGTCAGATCTATTGAGAG+TGG | 0.574173 | 4:-92305025 | None:intergenic |
| TTTGGGTTAAAGGAGTGAAA+GGG | 0.574578 | 4:-92305062 | None:intergenic |
| ATGTATCTGTTAGATCTACT+AGG | 0.575325 | 4:+92305388 | MsG0480024008.01.T01:CDS |
| GACACCACAGCAGTTGTAGG+AGG | 0.579333 | 4:-92305165 | None:intergenic |
| GTAGACCAGCAGATTTCAAG+TGG | 0.580659 | 4:-92304951 | None:intergenic |
| TCTGGAACAACAGAAGGAAA+GGG | 0.582719 | 4:-92305354 | None:intergenic |
| GATCTATTGAGAGTGGGAGG+TGG | 0.583566 | 4:-92305018 | None:intergenic |
| GAGGATGGGGTGCCACGTGG+TGG | 0.584493 | 4:-92304783 | None:intergenic |
| TCCTCCTCCTACAACTGCTG+TGG | 0.585779 | 4:+92305161 | MsG0480024008.01.T01:CDS |
| GTGTCTGTTAAAAGAGGGCG+TGG | 0.587867 | 4:+92305183 | MsG0480024008.01.T01:CDS |
| CCTTTAACCCAAAGAGGTCG+TGG | 0.592542 | 4:+92305072 | MsG0480024008.01.T01:CDS |
| GAGTTAGATCTGAAAGTCCC+AGG | 0.592545 | 4:-92305213 | None:intergenic |
| CATCTGCATACTTCTTGGGC+CGG | 0.595405 | 4:-92305419 | None:intergenic |
| GATCTACTAGGCCCAGAGGC+CGG | 0.595741 | 4:+92305400 | MsG0480024008.01.T01:CDS |
| TGGTCAGATCTATTGAGAGT+GGG | 0.603697 | 4:-92305024 | None:intergenic |
| ATTAATGGGCCTGCCCACCA+CGG | 0.604636 | 4:-92305484 | None:intergenic |
| GCCCAAGAAGTATGCAGATG+CGG | 0.606047 | 4:+92305422 | MsG0480024008.01.T01:CDS |
| CGGTGGTTCCAGCGACAAGG+CGG | 0.609470 | 4:+92305442 | MsG0480024008.01.T01:CDS |
| GCTGTGGTGTCTGTTAAAAG+AGG | 0.609515 | 4:+92305177 | MsG0480024008.01.T01:CDS |
| AGGTTGGGCTTGGACTTAGG+AGG | 0.610969 | 4:-92305099 | None:intergenic |
| ATGCGGTGGTTCCAGCGACA+AGG | 0.614719 | 4:+92305439 | MsG0480024008.01.T01:CDS |
| AAGGAGGATGGGGTGCCACG+TGG | 0.617913 | 4:-92304786 | None:intergenic |
| GTGGTTCCAGCGACAAGGCG+GGG | 0.619166 | 4:+92305444 | MsG0480024008.01.T01:CDS |
| TTGGTCTAGTATGAGATTAG+GGG | 0.621585 | 4:+92305615 | MsG0480024008.01.T01:intron |
| GGCCCATTAATCCCTCCGGA+AGG | 0.622991 | 4:+92305496 | MsG0480024008.01.T01:CDS |
| TATATCATCTCAGCGTAAGG+AGG | 0.625776 | 4:-92304802 | None:intergenic |
| CTACCGTCGCTCACTCACCA+TGG | 0.635209 | 4:+92304681 | MsG0480024008.01.T01:exon |
| AGTCCATGGTGAGTGAGCGA+CGG | 0.645514 | 4:-92304684 | None:intergenic |
| TCGTCCTAAGAAGCTTGCCG+TGG | 0.649764 | 4:+92305467 | MsG0480024008.01.T01:CDS |
| GATTAGATTAGAGTAACTAA+CGG | 0.650025 | 4:-92304621 | None:intergenic |
| CAGCAGTTGTAGGAGGAGGA+GGG | 0.658381 | 4:-92305158 | None:intergenic |
| ACATTAGGATCACCTTTGGG+CGG | 0.663242 | 4:-92305527 | None:intergenic |
| CAAGAAGTATGCAGATGCGG+TGG | 0.663985 | 4:+92305425 | MsG0480024008.01.T01:CDS |
| TTCGAGGGTGAAGGGAACGG+TGG | 0.666611 | 4:-92304743 | None:intergenic |
| TCAGATCTATTGAGAGTGGG+AGG | 0.671854 | 4:-92305021 | None:intergenic |
| TGCGTGTCTATCTGTCTATG+GGG | 0.672689 | 4:-92304572 | None:intergenic |
| GTTGAGATGTTGTGTTAACA+AGG | 0.674763 | 4:-92304929 | None:intergenic |
| CTGTGGTGTCTGTTAAAAGA+GGG | 0.676730 | 4:+92305178 | MsG0480024008.01.T01:CDS |
| CAACTTCACTCACCACCACG+TGG | 0.718293 | 4:+92304771 | MsG0480024008.01.T01:CDS |
| AAGGGAGATGAGCTTCAGAG+TGG | 0.733637 | 4:-92305044 | None:intergenic |
| GTTAGATCTACTAGGCCCAG+AGG | 0.757336 | 4:+92305396 | MsG0480024008.01.T01:CDS |
| TTAGATCTGAAAGTCCCAGG+AGG | 0.781122 | 4:-92305210 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAATAAAAACTCAACATT+AGG | - | Chr4:92305545-92305564 | None:intergenic | 20.0% |
| ! | AAACACACATAAATAGATGA+AGG | - | Chr4:92305569-92305588 | None:intergenic | 25.0% |
| ! | GATTAGATTAGAGTAACTAA+CGG | - | Chr4:92304624-92304643 | None:intergenic | 25.0% |
| !!! | TAATTTGACTTGCCTTATTT+TGG | + | Chr4:92305596-92305615 | MsG0480024008.01.T01:intron | 25.0% |
| ATGTATCTGTTAGATCTACT+AGG | + | Chr4:92305388-92305407 | MsG0480024008.01.T01:CDS | 30.0% | |
| TCTCATACTAGACCAAAATA+AGG | - | Chr4:92305611-92305630 | None:intergenic | 30.0% | |
| TTTGGTCTAGTATGAGATTA+GGG | + | Chr4:92305614-92305633 | MsG0480024008.01.T01:intron | 30.0% | |
| ! | TTTTGGTCTAGTATGAGATT+AGG | + | Chr4:92305613-92305632 | MsG0480024008.01.T01:intron | 30.0% |
| GTTGAGATGTTGTGTTAACA+AGG | - | Chr4:92304932-92304951 | None:intergenic | 35.0% | |
| TCAACATTAGGATCACCTTT+GGG | - | Chr4:92305533-92305552 | None:intergenic | 35.0% | |
| TCAGATCTAACTCGATAAAG+AGG | + | Chr4:92305223-92305242 | MsG0480024008.01.T01:CDS | 35.0% | |
| TTGGTCTAGTATGAGATTAG+GGG | + | Chr4:92305615-92305634 | MsG0480024008.01.T01:intron | 35.0% | |
| TTGTATATCATCTCAGCGTA+AGG | - | Chr4:92304808-92304827 | None:intergenic | 35.0% | |
| ! | ACGGTAGATTCGAGAATTTT+TGG | - | Chr4:92304668-92304687 | None:intergenic | 35.0% |
| ! | CAAAAGGTATGACAGTTGTT+GGG | - | Chr4:92305317-92305336 | None:intergenic | 35.0% |
| ! | CGGTAGATTCGAGAATTTTT+GGG | - | Chr4:92304667-92304686 | None:intergenic | 35.0% |
| ! | GATACATTAGCTTCATCTTC+TGG | - | Chr4:92305375-92305394 | None:intergenic | 35.0% |
| ! | TTTGGGTTAAAGGAGTGAAA+GGG | - | Chr4:92305065-92305084 | None:intergenic | 35.0% |
| ATCAAAGGAAGTTGAGTCCA+TGG | - | Chr4:92304701-92304720 | None:intergenic | 40.0% | |
| CTCAACATTAGGATCACCTT+TGG | - | Chr4:92305534-92305553 | None:intergenic | 40.0% | |
| CTGTGGTGTCTGTTAAAAGA+GGG | + | Chr4:92305178-92305197 | MsG0480024008.01.T01:CDS | 40.0% | |
| GGATCAAGCAAAAGAGCAAT+AGG | + | Chr4:92304856-92304875 | MsG0480024008.01.T01:CDS | 40.0% | |
| TATATCATCTCAGCGTAAGG+AGG | - | Chr4:92304805-92304824 | None:intergenic | 40.0% | |
| TGGTCAGATCTATTGAGAGT+GGG | - | Chr4:92305027-92305046 | None:intergenic | 40.0% | |
| TTCACTCCTTTAACCCAAAG+AGG | + | Chr4:92305066-92305085 | MsG0480024008.01.T01:CDS | 40.0% | |
| ! | CTTTGGGTTAAAGGAGTGAA+AGG | - | Chr4:92305066-92305085 | None:intergenic | 40.0% |
| ! | GCAAAAGGTATGACAGTTGT+TGG | - | Chr4:92305318-92305337 | None:intergenic | 40.0% |
| ! | TCTGGAACAACAGAAGGAAA+GGG | - | Chr4:92305357-92305376 | None:intergenic | 40.0% |
| !! | GAAGCACTGAAAGAGAAAGA+TGG | + | Chr4:92304835-92304854 | MsG0480024008.01.T01:CDS | 40.0% |
| !! | TCATCTTCTGGAACAACAGA+AGG | - | Chr4:92305363-92305382 | None:intergenic | 40.0% |
| !! | TTCTGGAACAACAGAAGGAA+AGG | - | Chr4:92305358-92305377 | None:intergenic | 40.0% |
| ACAACAGAAGGAAAGGGAAC+AGG | - | Chr4:92305351-92305370 | None:intergenic | 45.0% | |
| ACATTAGGATCACCTTTGGG+CGG | - | Chr4:92305530-92305549 | None:intergenic | 45.0% | |
| ACCGCATCTGCATACTTCTT+GGG | - | Chr4:92305426-92305445 | None:intergenic | 45.0% | |
| AGCCCATTGGACACAGATTT+GGG | - | Chr4:92305249-92305268 | None:intergenic | 45.0% | |
| AGGGTCGAGAGAAACGAAAA+CGG | - | Chr4:92305142-92305161 | None:intergenic | 45.0% | |
| AGTGCGTGTCTATCTGTCTA+TGG | - | Chr4:92304577-92304596 | None:intergenic | 45.0% | |
| ATTTGGTATGAGGTTGGGCT+TGG | - | Chr4:92305112-92305131 | None:intergenic | 45.0% | |
| CTCAACCACTTGAAATCTGC+TGG | + | Chr4:92304946-92304965 | MsG0480024008.01.T01:CDS | 45.0% | |
| GAGTTAGATCTGAAAGTCCC+AGG | - | Chr4:92305216-92305235 | None:intergenic | 45.0% | |
| GCTGTGGTGTCTGTTAAAAG+AGG | + | Chr4:92305177-92305196 | MsG0480024008.01.T01:CDS | 45.0% | |
| GTAGACCAGCAGATTTCAAG+TGG | - | Chr4:92304954-92304973 | None:intergenic | 45.0% | |
| GTCTATCTGTCTATGGGGAA+GGG | - | Chr4:92304570-92304589 | None:intergenic | 45.0% | |
| GTGCGTGTCTATCTGTCTAT+GGG | - | Chr4:92304576-92304595 | None:intergenic | 45.0% | |
| GTGGTCAGATCTATTGAGAG+TGG | - | Chr4:92305028-92305047 | None:intergenic | 45.0% | |
| TCAGATCTATTGAGAGTGGG+AGG | - | Chr4:92305024-92305043 | None:intergenic | 45.0% | |
| TGCGTGTCTATCTGTCTATG+GGG | - | Chr4:92304575-92304594 | None:intergenic | 45.0% | |
| TGGGCATTTGGTATGAGGTT+GGG | - | Chr4:92305117-92305136 | None:intergenic | 45.0% | |
| TGTCTATCTGTCTATGGGGA+AGG | - | Chr4:92304571-92304590 | None:intergenic | 45.0% | |
| TTAGATCTGAAAGTCCCAGG+AGG | - | Chr4:92305213-92305232 | None:intergenic | 45.0% | |
| ! | AGTGAAGTTGGGTTGTTCGA+GGG | - | Chr4:92304761-92304780 | None:intergenic | 45.0% |
| AAGGGAGATGAGCTTCAGAG+TGG | - | Chr4:92305047-92305066 | None:intergenic | 50.0% | |
| ACAGACACCACAGCAGTTGT+AGG | - | Chr4:92305171-92305190 | None:intergenic | 50.0% | |
| AGGCCCAAATCTGTGTCCAA+TGG | + | Chr4:92305243-92305262 | MsG0480024008.01.T01:CDS | 50.0% | |
| ATCTCAGCGTAAGGAGGATG+GGG | - | Chr4:92304799-92304818 | None:intergenic | 50.0% | |
| ATCTGTCTATGGGGAAGGGA+AGG | - | Chr4:92304566-92304585 | None:intergenic | 50.0% | |
| ATGAGGTTGGGCTTGGACTT+AGG | - | Chr4:92305105-92305124 | None:intergenic | 50.0% | |
| CACCGCATCTGCATACTTCT+TGG | - | Chr4:92305427-92305446 | None:intergenic | 50.0% | |
| CATCTCAGCGTAAGGAGGAT+GGG | - | Chr4:92304800-92304819 | None:intergenic | 50.0% | |
| CATCTGCATACTTCTTGGGC+CGG | - | Chr4:92305422-92305441 | None:intergenic | 50.0% | |
| CCTTTAACCCAAAGAGGTCG+TGG | + | Chr4:92305072-92305091 | MsG0480024008.01.T01:CDS | 50.0% | |
| CTGGGCATTTGGTATGAGGT+TGG | - | Chr4:92305118-92305137 | None:intergenic | 50.0% | |
| GAGCCCATTGGACACAGATT+TGG | - | Chr4:92305250-92305269 | None:intergenic | 50.0% | |
| GATCTATTGAGAGTGGGAGG+TGG | - | Chr4:92305021-92305040 | None:intergenic | 50.0% | |
| GGCCCAAATCTGTGTCCAAT+GGG | + | Chr4:92305244-92305263 | MsG0480024008.01.T01:CDS | 50.0% | |
| GGGTCGAGAGAAACGAAAAC+GGG | - | Chr4:92305141-92305160 | None:intergenic | 50.0% | |
| GTGTCTGTTAAAAGAGGGCG+TGG | + | Chr4:92305183-92305202 | MsG0480024008.01.T01:CDS | 50.0% | |
| GTTAGATCTACTAGGCCCAG+AGG | + | Chr4:92305396-92305415 | MsG0480024008.01.T01:CDS | 50.0% | |
| TATTGAGAGTGGGAGGTGGA+GGG | - | Chr4:92305017-92305036 | None:intergenic | 50.0% | |
| TCATCTCAGCGTAAGGAGGA+TGG | - | Chr4:92304801-92304820 | None:intergenic | 50.0% | |
| TCTGTCTATGGGGAAGGGAA+GGG | - | Chr4:92304565-92304584 | None:intergenic | 50.0% | |
| TTGTTCGAGGGTGAAGGGAA+CGG | - | Chr4:92304749-92304768 | None:intergenic | 50.0% | |
| ! | ACGTGGTGGTGAGTGAAGTT+GGG | - | Chr4:92304772-92304791 | None:intergenic | 50.0% |
| ! | CAAGAAGTATGCAGATGCGG+TGG | + | Chr4:92305425-92305444 | MsG0480024008.01.T01:CDS | 50.0% |
| ! | CCACGACCTCTTTGGGTTAA+AGG | - | Chr4:92305075-92305094 | None:intergenic | 50.0% |
| ! | GAGAGAAACGAAAACGGGCT+GGG | - | Chr4:92305136-92305155 | None:intergenic | 50.0% |
| ! | GAGTGAAGTTGGGTTGTTCG+AGG | - | Chr4:92304762-92304781 | None:intergenic | 50.0% |
| ! | GCCCAAGAAGTATGCAGATG+CGG | + | Chr4:92305422-92305441 | MsG0480024008.01.T01:CDS | 50.0% |
| ! | TGCGACTGCGATTGGGTTTT+AGG | - | Chr4:92305294-92305313 | None:intergenic | 50.0% |
| ! | TTGGGTTGTTCGAGGGTGAA+GGG | - | Chr4:92304754-92304773 | None:intergenic | 50.0% |
| !! | AACAAGGTGCTGTGTTCTGC+TGG | - | Chr4:92304916-92304935 | None:intergenic | 50.0% |
| !!! | GACTGCGATTGGGTTTTAGG+CGG | - | Chr4:92305291-92305310 | None:intergenic | 50.0% |
| AATCCCTCCGGAAGGCCAAT+TGG | + | Chr4:92305504-92305523 | MsG0480024008.01.T01:CDS | 55.0% | |
| ACAGCAGTTGTAGGAGGAGG+AGG | - | Chr4:92305162-92305181 | None:intergenic | 55.0% | |
| ACAGGAGCAGCAGCAGCAAA+AGG | - | Chr4:92305333-92305352 | None:intergenic | 55.0% | |
| ACCACAGCAGTTGTAGGAGG+AGG | - | Chr4:92305165-92305184 | None:intergenic | 55.0% | |
| AGGACGACCACGACCTCTTT+GGG | - | Chr4:92305082-92305101 | None:intergenic | 55.0% | |
| AGGACGTCGTTTGAGCCCAT+TGG | - | Chr4:92305262-92305281 | None:intergenic | 55.0% | |
| AGGTGGAGGAGGGAGATCAA+AGG | - | Chr4:92304716-92304735 | None:intergenic | 55.0% | |
| AGGTTGGGCTTGGACTTAGG+AGG | - | Chr4:92305102-92305121 | None:intergenic | 55.0% | |
| AGTCCATGGTGAGTGAGCGA+CGG | - | Chr4:92304687-92304706 | None:intergenic | 55.0% | |
| ATCACCTTTGGGCGGCCAAT+TGG | - | Chr4:92305522-92305541 | None:intergenic | 55.0% | |
| CAACTTCACTCACCACCACG+TGG | + | Chr4:92304771-92304790 | MsG0480024008.01.T01:CDS | 55.0% | |
| CAGCAGTTGTAGGAGGAGGA+GGG | - | Chr4:92305161-92305180 | None:intergenic | 55.0% | |
| CCTAAGAAGCTTGCCGTGGT+GGG | + | Chr4:92305471-92305490 | MsG0480024008.01.T01:CDS | 55.0% | |
| CGAGAGAAACGAAAACGGGC+TGG | - | Chr4:92305137-92305156 | None:intergenic | 55.0% | |
| CTATTGAGAGTGGGAGGTGG+AGG | - | Chr4:92305018-92305037 | None:intergenic | 55.0% | |
| GACACCACAGCAGTTGTAGG+AGG | - | Chr4:92305168-92305187 | None:intergenic | 55.0% | |
| GGCCTTCCGGAGGGATTAAT+GGG | - | Chr4:92305501-92305520 | None:intergenic | 55.0% | |
| TCCTAAGAAGCTTGCCGTGG+TGG | + | Chr4:92305470-92305489 | MsG0480024008.01.T01:CDS | 55.0% | |
| TCCTCCTCCTACAACTGCTG+TGG | + | Chr4:92305161-92305180 | MsG0480024008.01.T01:CDS | 55.0% | |
| TCGTCCTAAGAAGCTTGCCG+TGG | + | Chr4:92305467-92305486 | MsG0480024008.01.T01:CDS | 55.0% | |
| TGGCCTTCCGGAGGGATTAA+TGG | - | Chr4:92305502-92305521 | None:intergenic | 55.0% | |
| TGTTGGGTGCGACTGCGATT+GGG | - | Chr4:92305301-92305320 | None:intergenic | 55.0% | |
| TTGTTGGGTGCGACTGCGAT+TGG | - | Chr4:92305302-92305321 | None:intergenic | 55.0% | |
| ! | AATGGGCTCAAACGACGTCC+TGG | + | Chr4:92305261-92305280 | MsG0480024008.01.T01:CDS | 55.0% |
| ! | ATTAATGGGCCTGCCCACCA+CGG | - | Chr4:92305487-92305506 | None:intergenic | 55.0% |
| ! | CACGTGGTGGTGAGTGAAGT+TGG | - | Chr4:92304773-92304792 | None:intergenic | 55.0% |
| ! | GTTGGGTTGTTCGAGGGTGA+AGG | - | Chr4:92304755-92304774 | None:intergenic | 55.0% |
| !! | ACGAAAACGGGCTGGGCATT+TGG | - | Chr4:92305129-92305148 | None:intergenic | 55.0% |
| AAGGCCAATTGGCCGCCCAA+AGG | + | Chr4:92305515-92305534 | MsG0480024008.01.T01:CDS | 60.0% | |
| AGGGTGAAGGGAACGGTGGT+GGG | - | Chr4:92304742-92304761 | None:intergenic | 60.0% | |
| ATACTTCTTGGGCCGGCCTC+TGG | - | Chr4:92305415-92305434 | None:intergenic | 60.0% | |
| ATGCGGTGGTTCCAGCGACA+AGG | + | Chr4:92305439-92305458 | MsG0480024008.01.T01:CDS | 60.0% | |
| CCCACCACGGCAAGCTTCTT+AGG | - | Chr4:92305474-92305493 | None:intergenic | 60.0% | |
| CTACCGTCGCTCACTCACCA+TGG | + | Chr4:92304681-92304700 | MsG0480024008.01.T01:exon | 60.0% | |
| GAGGACGACCACGACCTCTT+TGG | - | Chr4:92305083-92305102 | None:intergenic | 60.0% | |
| GATCTACTAGGCCCAGAGGC+CGG | + | Chr4:92305400-92305419 | MsG0480024008.01.T01:CDS | 60.0% | |
| GGCAGGCCCATTAATCCCTC+CGG | + | Chr4:92305492-92305511 | MsG0480024008.01.T01:CDS | 60.0% | |
| GGCCCATTAATCCCTCCGGA+AGG | + | Chr4:92305496-92305515 | MsG0480024008.01.T01:CDS | 60.0% | |
| TACTTCTTGGGCCGGCCTCT+GGG | - | Chr4:92305414-92305433 | None:intergenic | 60.0% | |
| TTCGAGGGTGAAGGGAACGG+TGG | - | Chr4:92304746-92304765 | None:intergenic | 60.0% | |
| ! | CGGGCTGGGCATTTGGTATG+AGG | - | Chr4:92305122-92305141 | None:intergenic | 60.0% |
| ! | TGGTGGGTAGAGGTGGAGGA+GGG | - | Chr4:92304726-92304745 | None:intergenic | 60.0% |
| !! | AAGGGAACGGTGGTGGGTAG+AGG | - | Chr4:92304736-92304755 | None:intergenic | 60.0% |
| !!! | TGGGTTTTAGGCGGACGACC+AGG | - | Chr4:92305282-92305301 | None:intergenic | 60.0% |
| AGTGGGAGGTGGAGGGAGTG+AGG | - | Chr4:92305010-92305029 | None:intergenic | 65.0% | |
| CGGTGGTTCCAGCGACAAGG+CGG | + | Chr4:92305442-92305461 | MsG0480024008.01.T01:CDS | 65.0% | |
| GAGGGTGAAGGGAACGGTGG+TGG | - | Chr4:92304743-92304762 | None:intergenic | 65.0% | |
| GGAGGTGGAGGGAGTGAGGA+AGG | - | Chr4:92305006-92305025 | None:intergenic | 65.0% | |
| GGTGGTTCCAGCGACAAGGC+GGG | + | Chr4:92305443-92305462 | MsG0480024008.01.T01:CDS | 65.0% | |
| GTGGTTCCAGCGACAAGGCG+GGG | + | Chr4:92305444-92305463 | MsG0480024008.01.T01:CDS | 65.0% | |
| ! | AAGGAGGATGGGGTGCCACG+TGG | - | Chr4:92304789-92304808 | None:intergenic | 65.0% |
| !! | ACGGTGGTGGGTAGAGGTGG+AGG | - | Chr4:92304730-92304749 | None:intergenic | 65.0% |
| !! | AGAAGCTTGCCGTGGTGGGC+AGG | + | Chr4:92305475-92305494 | MsG0480024008.01.T01:CDS | 65.0% |
| !! | CGGCCAATTGGCCTTCCGGA+GGG | - | Chr4:92305510-92305529 | None:intergenic | 65.0% |
| !! | GGAACGGTGGTGGGTAGAGG+TGG | - | Chr4:92304733-92304752 | None:intergenic | 65.0% |
| !! | GTGGTGGGTAGAGGTGGAGG+AGG | - | Chr4:92304727-92304746 | None:intergenic | 65.0% |
| !! | TGGGCGGCCAATTGGCCTTC+CGG | - | Chr4:92305514-92305533 | None:intergenic | 65.0% |
| ! | AGAGGGCGTGGACGTCCTCC+TGG | + | Chr4:92305195-92305214 | MsG0480024008.01.T01:CDS | 70.0% |
| ! | GAGGATGGGGTGCCACGTGG+TGG | - | Chr4:92304786-92304805 | None:intergenic | 70.0% |
| ! | GAGGGCGTGGACGTCCTCCT+GGG | + | Chr4:92305196-92305215 | MsG0480024008.01.T01:CDS | 70.0% |
| !! | GCGGCCAATTGGCCTTCCGG+AGG | - | Chr4:92305511-92305530 | None:intergenic | 70.0% |
| GGACGACCCCGCCTTGTCGC+TGG | - | Chr4:92305453-92305472 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 92304542 | 92305644 | 92304542 | ID=MsG0480024008.01;Name=MsG0480024008.01 |
| Chr4 | mRNA | 92304542 | 92305644 | 92304542 | ID=MsG0480024008.01.T01;Parent=MsG0480024008.01;Name=MsG0480024008.01.T01;_AED=0.32;_eAED=0.34;_QI=158|0|0.5|1|1|1|2|0|285 |
| Chr4 | exon | 92304542 | 92305536 | 92304542 | ID=MsG0480024008.01.T01:exon:5250;Parent=MsG0480024008.01.T01 |
| Chr4 | exon | 92305624 | 92305644 | 92305624 | ID=MsG0480024008.01.T01:exon:5251;Parent=MsG0480024008.01.T01 |
| Chr4 | five_prime_UTR | 92304542 | 92304699 | 92304542 | ID=MsG0480024008.01.T01:five_prime_utr;Parent=MsG0480024008.01.T01 |
| Chr4 | CDS | 92304700 | 92305536 | 92304700 | ID=MsG0480024008.01.T01:cds;Parent=MsG0480024008.01.T01 |
| Chr4 | CDS | 92305624 | 92305644 | 92305624 | ID=MsG0480024008.01.T01:cds;Parent=MsG0480024008.01.T01 |
| Gene Sequence |
| Protein sequence |
