AlfalfaGEDB | MsG0480021490.01

M. sativa cultivar ZhongmuNo.1 / MsG0480021490.01

KEGG: K12824
GO: GO:0005515
PFAM: PF00397

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021490.01.T01	XP_003607201.2	82.477	428	40	7	1	414	1	407	0	585

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021490.01.T01	Q9LT25	39.49	314	126	10	112	415	61	320	5.73E-45	169

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047790.01	MsG0480021490.01	0.846135	2.627256e-59	4.477370e-56
MsG0180000010.01	MsG0480021490.01	0.829386	5.298285e-55	5.414823e-52
MsG0180000318.01	MsG0480021490.01	0.874713	5.446342e-68	2.476720e-64
MsG0180000611.01	MsG0480021490.01	-0.814160	1.775068e-51	1.182073e-48
MsG0180001706.01	MsG0480021490.01	0.839603	1.435462e-57	1.992312e-54
MsG0180002264.01	MsG0480021490.01	0.805055	1.605482e-49	8.410868e-47
MsG0180002317.01	MsG0480021490.01	0.816531	5.270747e-52	3.744204e-49
MsG0180002668.01	MsG0480021490.01	0.807982	3.873715e-50	2.188401e-47
MsG0180003246.01	MsG0480021490.01	0.803573	3.269074e-49	1.648576e-46
MsG0180004335.01	MsG0480021490.01	0.817119	3.889588e-52	2.807893e-49

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021490.01.T01	MTR_4g074440	82.477	428	40	7	1	414	1	407	0.0	585
MsG0480021490.01.T01	MTR_4g074440	82.477	428	40	7	1	414	1	407	0.0	571

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021490.01.T01	AT3G19840	39.490	314	126	10	112	415	61	320	5.84e-46	169

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Find 161 sgRNAs with CRISPR-Local

Find 400 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTGGCGGCGCACTTT+GGG	0.332039	4:-58552995	None:intergenic
AAAATTATATGGAAATGAAG+GGG	0.663777	4:-58552971	None:intergenic
AAAGCTGGCGGCGCACTTTG+GGG	0.571914	4:-58552994	None:intergenic
AAAGTAGTTGGGCGATAGTT+AGG	0.309852	4:-58554590	None:intergenic
AAATCTTGTGTGGCGGAATC+AGG	0.355244	4:-58554485	None:intergenic
AACAAAATGTTAACGCTTCT+GGG	0.340217	4:+58552756	MsG0480021490.01.T01:CDS
AACTTACATTGAAACTGGAG+TGG	0.604902	4:-58555771	None:intergenic
AAGAAGAAGATGATGGAATA+GGG	0.406202	4:-58552593	None:intergenic
AAGCCTCTATGTGAGGCATT+AGG	0.468749	4:-58554794	None:intergenic
AAGGGGCAGCTGGACGTGGG+GGG	0.482647	4:-58552954	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTCATATCTCTACATGC+AGG	-	Chr4:58556259-58556278	None:intergenic	30.0%
AACAAAATGTTAACGCTTCT+GGG	+	Chr4:58552756-58552775	MsG0480021490.01.T01:CDS	30.0%
AAGAGTGGCATTAAACAATT+AGG	-	Chr4:58552688-58552707	None:intergenic	30.0%
AAGTAATTTCACACACATAC+TGG	+	Chr4:58555086-58555105	MsG0480021490.01.T01:intron	30.0%
AATCAAGGAAAAGAAGTAGA+AGG	+	Chr4:58556071-58556090	MsG0480021490.01.T01:intron	30.0%
AATTCATATCTCTACATGCA+GGG	-	Chr4:58556258-58556277	None:intergenic	30.0%
ATCTGTTCTACAAATGAAGT+AGG	-	Chr4:58553269-58553288	None:intergenic	30.0%
ATGATAGAATATATGGGAGA+TGG	+	Chr4:58553076-58553095	MsG0480021490.01.T01:intron	30.0%
CACAGAAGTTTAAATAACAG+TGG	+	Chr4:58553875-58553894	MsG0480021490.01.T01:intron	30.0%
CACTTTACTAAAATCTTGTG+TGG	-	Chr4:58554498-58554517	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	58552293	58556829	58552293	ID=MsG0480021490.01;Name=MsG0480021490.01
Chr4	mRNA	58552293	58556829	58552293	ID=MsG0480021490.01.T01;Parent=MsG0480021490.01;Name=MsG0480021490.01.T01;_AED=0.47;_eAED=0.47;_QI=139\|0.71\|0.62\|1\|0.85\|0.75\|8\|0\|415
Chr4	exon	58552293	58552419	58552293	ID=MsG0480021490.01.T01:exon:17304;Parent=MsG0480021490.01.T01
Chr4	exon	58552534	58552627	58552534	ID=MsG0480021490.01.T01:exon:17305;Parent=MsG0480021490.01.T01
Chr4	exon	58552714	58552805	58552714	ID=MsG0480021490.01.T01:exon:17306;Parent=MsG0480021490.01.T01
Chr4	exon	58552892	58553047	58552892	ID=MsG0480021490.01.T01:exon:17307;Parent=MsG0480021490.01.T01
Chr4	exon	58554479	58555073	58554479	ID=MsG0480021490.01.T01:exon:17308;Parent=MsG0480021490.01.T01
Chr4	exon	58555209	58555409	58555209	ID=MsG0480021490.01.T01:exon:17309;Parent=MsG0480021490.01.T01
Chr4	exon	58555750	58555786	58555750	ID=MsG0480021490.01.T01:exon:17310;Parent=MsG0480021490.01.T01
Chr4	exon	58556745	58556829	58556745	ID=MsG0480021490.01.T01:exon:17311;Parent=MsG0480021490.01.T01
Chr4	five_prime_UTR	58552293	58552419	58552293	ID=MsG0480021490.01.T01:five_prime_utr;Parent=MsG0480021490.01.T01
Chr4	five_prime_UTR	58552534	58552545	58552534	ID=MsG0480021490.01.T01:five_prime_utr;Parent=MsG0480021490.01.T01
Chr4	CDS	58552546	58552627	58552546	ID=MsG0480021490.01.T01:cds;Parent=MsG0480021490.01.T01
Chr4	CDS	58552714	58552805	58552714	ID=MsG0480021490.01.T01:cds;Parent=MsG0480021490.01.T01
Chr4	CDS	58552892	58553047	58552892	ID=MsG0480021490.01.T01:cds;Parent=MsG0480021490.01.T01
Chr4	CDS	58554479	58555073	58554479	ID=MsG0480021490.01.T01:cds;Parent=MsG0480021490.01.T01
Chr4	CDS	58555209	58555409	58555209	ID=MsG0480021490.01.T01:cds;Parent=MsG0480021490.01.T01
Chr4	CDS	58555750	58555786	58555750	ID=MsG0480021490.01.T01:cds;Parent=MsG0480021490.01.T01
Chr4	CDS	58556745	58556829	58556745	ID=MsG0480021490.01.T01:cds;Parent=MsG0480021490.01.T01

Gene Sequence

>MsG0480021490.01.T01

ATGGCTCAACCACCTCCCTCTGCTGCTGAAACAACGCCTACTTCCATCCCTATTCCATCATCTTCTTCTTCTTCTTCTTCAACTCCTGCATCATCACCGGCGCCATCAATCTCTTACGCCGCCCAACAAAATGTTAACGCTTCTGGGAATTCTCAGCAACCGCCGTCACATTCTGGGATGAACCCTAATTCGGCTGTCAACCCTCCTATTCCTGCTCAACCTCCATTTCATACTCACCCCCCACGTCCAGCTGCCCCTTCATTTCCATATAATTTTCCCCAAAGTGCGCCGCCAGCTTTTACTGCGAACCAACACAGGCAATCTAACACTAACATGCCTGATTCCGCCACACAAGATTTTAGTAAAGTGTCATCTGCATCAAGTAACTTACATCCTGTTCCTGCTCCTACTTCTATATCCGCAATGCCGCCTTGCTCTGACCCTAACTATCGCCCAACTACTTTATGGATGCCAACTGCCCCAACTTTTCCCGTCCATCCTGTAATGCCCGGAACTCCTAGTACTCCCGGTCCCCCTGGATTAGCAAAACCTGTGATATTACCCTCCAATCCAGCTGCTCCATCTACAAGCACAGGTTTTCCCTCAGCTGCAGTACCGAGACAAAATATGCCAACTGCATCAGATCCTAATGCCTCACATAGAGGCTTACCCTATCCACCCATACCATCCATGGTTGCTCCACCTCAGGGATATTGGTTACAGCCTCCACAGATGAGTGGTGTACATAGGCCACCATTTCATCAATATCCTGCTGCTTTTCCTGGCCCCTTTTCATTTCCAGCACGTGGTGGTGCACTCCCTGCTGTTCCAGTACCTGATTCTCAACCTCCTGGTGTTACTCCTGTTGGTGCTGCCAGCATTTCTGCTCCCGCTGCTTCCAGTCATCTGCTGAGGGGAACATCTGATGACAAGCACAAATCAAACGCCACTGTGACACAGAATGAGGATGCCGCTAATGATCAGCTAGATGCTTGGACTGCCCACAAGACTGAAGCAGGGATTGTATACTATTATAATGCTTTGACAGGGCAATCAACATATGATAAACCTGCTGGCTTTAAAGGGGAGGTACTGATACTGATTATCTACGTTCTTAGTAGATCTTGCTCACAAGTTGCTGTGCAGCCCACTCCAGTTTCAATGGTAGATTTGCCTGGTACTGATTGGCAGTTGGTCTCTACTAGTGATGGGAAAAAATATTACTATAACAATCGAACCAAGGTATGA

Protein sequence

>MsG0480021490.01.T01

MAQPPPSAAETTPTSIPIPSSSSSSSSTPASSPAPSISYAAQQNVNASGNSQQPPSHSGMNPNSAVNPPIPAQPPFHTHPPRPAAPSFPYNFPQSAPPAFTANQHRQSNTNMPDSATQDFSKVSSASSNLHPVPAPTSISAMPPCSDPNYRPTTLWMPTAPTFPVHPVMPGTPSTPGPPGLAKPVILPSNPAAPSTSTGFPSAAVPRQNMPTASDPNASHRGLPYPPIPSMVAPPQGYWLQPPQMSGVHRPPFHQYPAAFPGPFSFPARGGALPAVPVPDSQPPGVTPVGAASISAPAASSHLLRGTSDDKHKSNATVTQNEDAANDQLDAWTAHKTEAGIVYYYNALTGQSTYDKPAGFKGEVLILIIYVLSRSCSQVAVQPTPVSMVDLPGTDWQLVSTSDGKKYYYNNRTKV*