AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014137.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014137.01.T01 MTR_3g051280 93.622 439 17 3 1 438 1 429 0.0 807
MsG0380014137.01.T01 MTR_3g051280 93.166 439 16 3 1 438 1 426 0.0 802
MsG0380014137.01.T01 MTR_3g051280 95.190 395 17 2 1 394 1 394 0.0 742
MsG0380014137.01.T01 MTR_4g131990 41.497 147 61 5 16 159 14 138 3.56e-19 90.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014137.01.T01 AT5G54930 33.333 258 114 8 1 251 1 207 3.20e-24 102
MsG0380014137.01.T01 AT5G54930 33.333 258 114 8 1 251 1 207 4.31e-24 101
MsG0380014137.01.T01 AT4G21895 43.000 100 50 2 80 179 34 126 1.41e-17 82.4
MsG0380014137.01.T01 AT4G21895 43.000 100 50 2 80 179 34 126 1.41e-17 82.4
MsG0380014137.01.T01 AT5G52890 33.750 160 64 6 1 160 9 126 2.42e-14 74.7
MsG0380014137.01.T01 AT5G52890 33.750 160 64 6 1 160 9 126 2.64e-14 74.3

Find 157 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTGCTGCTTTGGATTCC+TGG 0.118443 3:+50252409 None:intergenic
ATTAAACTTGCAAGCCTTAT+TGG 0.131441 3:-50252138 MsG0380014137.01.T01:three_prime_UTR
TCAGAAGAAGATTGATAATT+TGG 0.169807 3:+50253089 None:intergenic
AACCATCTGGCGTATTATTT+TGG 0.193727 3:+50253927 None:intergenic
CATCATTTGATTCCCTTTCT+TGG 0.195210 3:+50253729 None:intergenic
TGGCTAGTTGATCGTTAATT+TGG 0.209615 3:+50253327 None:intergenic
ACGCCACTCGCAAGAGAAAT+TGG 0.227874 3:+50253224 None:intergenic
CATAAAATAGTATTAGTTAT+TGG 0.229805 3:-50252216 MsG0380014137.01.T01:three_prime_UTR
ATTGAAACCCTTCCAGTAAA+TGG 0.241277 3:-50253440 MsG0380014137.01.T01:CDS
TACCGAAGGAACGCTCATTC+TGG 0.244445 3:+50253355 None:intergenic
TTGGATGATATAAGGAGTTT+TGG 0.266891 3:-50252369 MsG0380014137.01.T01:CDS
TTGCTTGGACTTGGCATATA+GGG 0.284414 3:+50253833 None:intergenic
CCCTTTCTTGGACCCTTTGA+AGG 0.286296 3:+50253741 None:intergenic
AGATCCTGCCTCTGCTGCTT+TGG 0.296148 3:+50252401 None:intergenic
ATGGTGGGCCAGGCTGTTTC+CGG 0.315383 3:-50253704 MsG0380014137.01.T01:CDS
CCTTCACTTTGCACGCTACT+TGG 0.317999 3:+50253122 None:intergenic
CTCTCCACTGAATCTGGCCT+TGG 0.320127 3:+50253857 None:intergenic
TTAAACTTGCAAGCCTTATT+GGG 0.327750 3:-50252137 MsG0380014137.01.T01:three_prime_UTR
GAAATCAACAAAACCCAATA+AGG 0.338989 3:+50252124 None:intergenic
GTTGAACCAGCCCCACCTCC+TGG 0.352560 3:-50253791 MsG0380014137.01.T01:CDS
TAGCATGACTCTCGAGAAAA+TGG 0.356595 3:-50253027 MsG0380014137.01.T01:CDS
TGATGCCCAGGAGGTGGGGC+TGG 0.360127 3:+50253785 None:intergenic
TTCAGTGCAGTCAGAAACTT+TGG 0.365482 3:+50252839 None:intergenic
CGCTACTTGGAAATGAGTTC+TGG 0.368271 3:+50253135 None:intergenic
GTTTCTGACTGCACTGAAAC+TGG 0.371284 3:-50252834 MsG0380014137.01.T01:CDS
TTGTCTACTTGCATAGGGCT+TGG 0.373680 3:+50252945 None:intergenic
AAAGGATTAGTCTTTAAGTC+TGG 0.381555 3:-50253611 MsG0380014137.01.T01:CDS
TAGGGACTCTCCACTGAATC+TGG 0.384235 3:+50253851 None:intergenic
CGACCACGTTTGCGCTTCAT+AGG 0.386572 3:+50253893 None:intergenic
GAGACAAGTTGGATGATATA+AGG 0.386599 3:-50252377 MsG0380014137.01.T01:CDS
AGAGGAGTTTGAAACTGATT+AGG 0.390124 3:+50253503 None:intergenic
AGGCATGGTGTTTCCAGTCT+TGG 0.392011 3:+50252992 None:intergenic
GCAGACTGTGAACCATTTAC+TGG 0.395488 3:+50253428 None:intergenic
CGCCACTCGCAAGAGAAATT+GGG 0.400103 3:+50253225 None:intergenic
ACCTCGGTTCTGTGGATCAT+TGG 0.407265 3:+50253542 None:intergenic
AATAATACGCCAGATGGTTC+AGG 0.412050 3:-50253923 MsG0380014137.01.T01:CDS
TTGGCTTTGTCTACTTGCAT+AGG 0.416479 3:+50252939 None:intergenic
GGCATCCCATTTGAAAAGTT+AGG 0.420954 3:+50253275 None:intergenic
TGAAACTGATTAGGTCTTGA+AGG 0.421598 3:+50253512 None:intergenic
ACCTGGAGCCACATCATTCT+CGG 0.422377 3:+50253568 None:intergenic
GATTGTGGGAAAGGAAATTC+CGG 0.424429 3:-50253201 MsG0380014137.01.T01:CDS
TTTGCTTGGACTTGGCATAT+AGG 0.425283 3:+50253832 None:intergenic
ATGAGCGTTCCTTCGGTAAC+CGG 0.426592 3:-50253350 MsG0380014137.01.T01:CDS
TGGTTCACAGTCTGCCCCTC+TGG 0.428928 3:-50253420 MsG0380014137.01.T01:CDS
CTGCTTGATGCCCAGGAGGT+GGG 0.430200 3:+50253780 None:intergenic
CCCGAGAATGATGTGGCTCC+AGG 0.437254 3:-50253569 MsG0380014137.01.T01:CDS
AAAGCAGCAGAGGCAGGATC+TGG 0.437655 3:-50252399 MsG0380014137.01.T01:CDS
AACAGGTTGACCCACGTCAT+TGG 0.438285 3:+50252920 None:intergenic
CTGTGGATCATTGGAATACC+TGG 0.438439 3:+50253551 None:intergenic
CCTGGGCATCAAGCAGTTAA+CGG 0.439582 3:-50253773 MsG0380014137.01.T01:CDS
TTGCAGGTACAACAAGAAAC+AGG 0.444080 3:-50252795 MsG0380014137.01.T01:CDS
ACTGCTTGATGCCCAGGAGG+TGG 0.445018 3:+50253779 None:intergenic
ACCGAAGGAACGCTCATTCT+GGG 0.446537 3:+50253356 None:intergenic
ACTAGAACTAACTGCTCCTC+TGG 0.447178 3:+50253394 None:intergenic
GGAACTGGACTTCAAGATGC+TGG 0.448099 3:-50252348 MsG0380014137.01.T01:CDS
TGGCTTTGTCTACTTGCATA+GGG 0.448868 3:+50252940 None:intergenic
ACATCATTCTCGGGGCAAAC+AGG 0.452454 3:+50253578 None:intergenic
CCGTTAACTGCTTGATGCCC+AGG 0.455355 3:+50253773 None:intergenic
ACGGAAATCAACACCTTCAA+AGG 0.459382 3:-50253754 MsG0380014137.01.T01:CDS
TGCTTGATGCCCAGGAGGTG+GGG 0.463697 3:+50253781 None:intergenic
TGCAGAGGCTGATTCAAAAC+AGG 0.464136 3:+50252903 None:intergenic
AGCAGTTAGTTCTAGTAACT+TGG 0.464666 3:-50253387 MsG0380014137.01.T01:CDS
ACCTTCAAAGGGTCCAAGAA+AGG 0.466720 3:-50253742 MsG0380014137.01.T01:CDS
AAGTTAGGTTGGAACAAAAC+AGG 0.471101 3:+50253290 None:intergenic
TCTCGAGAAAATGGATGTAA+TGG 0.471278 3:-50253018 MsG0380014137.01.T01:CDS
GAAATTGGGGCGACTTGTAA+TGG 0.471625 3:+50253239 None:intergenic
GGCTAGTAGTTTGAGCAGGA+GGG 0.473115 3:+50253156 None:intergenic
CTTGCGAGTGGCGTGATTGT+GGG 0.473844 3:-50253215 MsG0380014137.01.T01:CDS
GATGTAATGGACACCAAGAC+TGG 0.474981 3:-50253005 MsG0380014137.01.T01:CDS
TCTCCACTGAATCTGGCCTT+GGG 0.480600 3:+50253858 None:intergenic
AATTCTGATACTACTTTGAA+AGG 0.481655 3:-50253629 MsG0380014137.01.T01:CDS
AAGGGAATCAAATGATGTAA+TGG 0.489141 3:-50253723 MsG0380014137.01.T01:CDS
TCCCAGAATGAGCGTTCCTT+CGG 0.489557 3:-50253357 MsG0380014137.01.T01:CDS
GGGGCTGGTTCAACACGAAC+AGG 0.491603 3:+50253800 None:intergenic
GAAGAAGATTGATAATTTGG+AGG 0.493685 3:+50253092 None:intergenic
CCTGGAGCCACATCATTCTC+GGG 0.495032 3:+50253569 None:intergenic
TAAGCATTCAATAATCAGAA+AGG 0.497313 3:+50252306 None:intergenic
GGCTGTTTCCGGTGTAATTG+AGG 0.499958 3:-50253693 MsG0380014137.01.T01:CDS
TGTTGATTTCACTTGGAAGT+TGG 0.500314 3:-50252111 MsG0380014137.01.T01:three_prime_UTR
TTCTGGCTAGTAGTTTGAGC+AGG 0.503500 3:+50253152 None:intergenic
TCTTGCGAGTGGCGTGATTG+TGG 0.504770 3:-50253216 MsG0380014137.01.T01:CDS
TTCGCCACTGTATTATCGCC+AGG 0.505498 3:+50252972 None:intergenic
GGCAGGATCTGGAGACAAGT+TGG 0.508340 3:-50252388 MsG0380014137.01.T01:CDS
TCCCATTTGAAAAGTTAGGT+TGG 0.508720 3:+50253279 None:intergenic
AGTGTTTGATTTCCATCTGC+CGG 0.516119 3:+50253182 None:intergenic
TATGATAATAATAATCCTGC+TGG 0.518344 3:+50252241 None:intergenic
TTCAATTCTAGAAGCACTCA+CGG 0.520428 3:+50253457 None:intergenic
GGCACATCTCCTGAACCATC+TGG 0.522349 3:+50253914 None:intergenic
TGGCTAGTAGTTTGAGCAGG+AGG 0.523623 3:+50253155 None:intergenic
GAATCCAAAGCAGCAGAGGC+AGG 0.523670 3:-50252405 MsG0380014137.01.T01:CDS
TCAGTGCAGTCAGAAACTTT+GGG 0.523966 3:+50252840 None:intergenic
TCTGGCCTTGGGTATTTCCG+TGG 0.526084 3:+50253869 None:intergenic
TCGAGAGTCATGCTAGCTAC+TGG 0.527457 3:+50253035 None:intergenic
AAGACTGGAAACACCATGCC+TGG 0.527637 3:-50252990 MsG0380014137.01.T01:CDS
CTGATTAGGTCTTGAAGGGA+AGG 0.528100 3:+50253517 None:intergenic
CCTCTCCCAAAGGAAAAGAA+TGG 0.528168 3:-50253485 MsG0380014137.01.T01:CDS
TTAGTGGCTATTGTGCCAGC+AGG 0.528676 3:-50252256 MsG0380014137.01.T01:three_prime_UTR
CCTTCAAAGGGTCCAAGAAA+GGG 0.533796 3:-50253741 MsG0380014137.01.T01:CDS
CACTGTATTATCGCCAGGCA+TGG 0.533846 3:+50252977 None:intergenic
CTGTGAACCATTTACTGGAA+GGG 0.534420 3:+50253433 None:intergenic
TTGAACCAGCCCCACCTCCT+GGG 0.534559 3:-50253790 MsG0380014137.01.T01:CDS
AAATGATGTAATGGTGGGCC+AGG 0.538614 3:-50253714 MsG0380014137.01.T01:CDS
GGAAAGGAAATTCCGGCAGA+TGG 0.539319 3:-50253194 MsG0380014137.01.T01:CDS
CCAGGAATCCAAAGCAGCAG+AGG 0.540269 3:-50252409 MsG0380014137.01.T01:CDS
AACAGGCATCACATTACCTC+TGG 0.540554 3:+50253307 None:intergenic
TCTAACACTGAGCAAATATC+CGG 0.541446 3:+50253658 None:intergenic
TAGTTGATCGTTAATTTGGC+CGG 0.544457 3:+50253331 None:intergenic
CTGGCCTTGGGTATTTCCGT+GGG 0.544590 3:+50253870 None:intergenic
TTAATTTGGCCGGTTACCGA+AGG 0.545850 3:+50253341 None:intergenic
CAATTACACCGGAAACAGCC+TGG 0.553563 3:+50253696 None:intergenic
GAAACTGATTAGGTCTTGAA+GGG 0.557589 3:+50253513 None:intergenic
CGGAAATCAACACCTTCAAA+GGG 0.559011 3:-50253753 MsG0380014137.01.T01:CDS
GGAATCAAATGATGTAATGG+TGG 0.559016 3:-50253720 MsG0380014137.01.T01:CDS
AGCGCAAACGTGGTCGCCCA+CGG 0.560972 3:-50253886 MsG0380014137.01.T01:CDS
AGAAACTTTGGGAGCAGAAG+CGG 0.562279 3:+50252851 None:intergenic
TATTTGCTCAGTGTTAGAGT+TGG 0.562970 3:-50253653 MsG0380014137.01.T01:CDS
ATACCCAAGGCCAGATTCAG+TGG 0.569169 3:-50253861 MsG0380014137.01.T01:CDS
GGAAGGGAACCTCGGTTCTG+TGG 0.569993 3:+50253534 None:intergenic
GGCTGTACAGTCTCATGTTG+AGG 0.572055 3:-50252880 MsG0380014137.01.T01:CDS
AACCAAAATAATACGCCAGA+TGG 0.583356 3:-50253929 MsG0380014137.01.T01:CDS
TGGCGATAATACAGTGGCGA+AGG 0.587759 3:-50252970 MsG0380014137.01.T01:CDS
AGGAACGCTCATTCTGGGAG+CGG 0.588124 3:+50253361 None:intergenic
GCCCCAATTTCTCTTGCGAG+TGG 0.589035 3:-50253227 MsG0380014137.01.T01:CDS
GCTAGTAGTTTGAGCAGGAG+GGG 0.590589 3:+50253157 None:intergenic
CTGCTCCTCTGGGAACCAGA+GGG 0.596790 3:+50253405 None:intergenic
ATTGAGGCAGTATTCGATGC+CGG 0.599407 3:-50253677 MsG0380014137.01.T01:CDS
CCAAGTAGCGTGCAAAGTGA+AGG 0.601328 3:-50253122 MsG0380014137.01.T01:CDS
GCCACTCGCAAGAGAAATTG+GGG 0.603986 3:+50253226 None:intergenic
TCAATTCTAGAAGCACTCAC+GGG 0.604253 3:+50253458 None:intergenic
ACTGTGAACCATTTACTGGA+AGG 0.604640 3:+50253432 None:intergenic
CTAGAACTAACTGCTCCTCT+GGG 0.606522 3:+50253395 None:intergenic
GAATAATAAAACAGAAAACC+AGG 0.607381 3:-50252427 MsG0380014137.01.T01:CDS
GAATCAAATGATGTAATGGT+GGG 0.609264 3:-50253719 MsG0380014137.01.T01:CDS
GTTTCAAACTCCTCTCCCAA+AGG 0.613156 3:-50253495 MsG0380014137.01.T01:CDS
ATTGGGGCGACTTGTAATGG+TGG 0.619396 3:+50253242 None:intergenic
GAGTGGCGTGATTGTGGGAA+AGG 0.625266 3:-50253210 MsG0380014137.01.T01:CDS
GTCGCCCACGGAAATACCCA+AGG 0.625486 3:-50253874 MsG0380014137.01.T01:CDS
TGAGACTGTACAGCCTGCAG+AGG 0.627785 3:+50252888 None:intergenic
GTGCCTATGAAGCGCAAACG+TGG 0.634289 3:-50253896 MsG0380014137.01.T01:CDS
GGCGACTTGTAATGGTGGAG+TGG 0.636215 3:+50253247 None:intergenic
TGTAATGGTGGAGTGGACAC+CGG 0.637351 3:+50253254 None:intergenic
TGATTAGGTCTTGAAGGGAA+GGG 0.650556 3:+50253518 None:intergenic
TGATGTGCTGAATAAAATCG+AGG 0.651046 3:-50253069 MsG0380014137.01.T01:CDS
TCTTGAAGGGAAGGGAACCT+CGG 0.656760 3:+50253526 None:intergenic
TCTGCCCCTCTGGTTCCCAG+AGG 0.657264 3:-50253410 MsG0380014137.01.T01:CDS
ACTGCTCCTCTGGGAACCAG+AGG 0.664790 3:+50253404 None:intergenic
GAATACTGCCTCAATTACAC+CGG 0.672283 3:+50253685 None:intergenic
AGTAGACAAAGCCAATGACG+TGG 0.672585 3:-50252931 MsG0380014137.01.T01:CDS
TGTTTGCCCCGAGAATGATG+TGG 0.676534 3:-50253576 MsG0380014137.01.T01:CDS
CTGGAGCCACATCATTCTCG+GGG 0.681166 3:+50253570 None:intergenic
TCCAATGATCCACAGAACCG+AGG 0.682109 3:-50253543 MsG0380014137.01.T01:CDS
TTAACTGCTTGATGCCCAGG+AGG 0.685647 3:+50253776 None:intergenic
GTAGACAAAGCCAATGACGT+GGG 0.692467 3:-50252930 MsG0380014137.01.T01:CDS
TGCTCCTCTGGGAACCAGAG+GGG 0.693826 3:+50253406 None:intergenic
ATTAACGATCAACTAGCCAG+AGG 0.702155 3:-50253323 MsG0380014137.01.T01:CDS
CATGCCTGGCGATAATACAG+TGG 0.741997 3:-50252976 MsG0380014137.01.T01:CDS
ACAAGAAACAGGATTCCCTG+CGG 0.810310 3:-50252784 MsG0380014137.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCAAATTTATAGTTTTTT+AGG - Chr3:50253839-50253858 MsG0380014137.01.T01:CDS 10.0%
!! CATAAAATAGTATTAGTTAT+TGG - Chr3:50253796-50253815 MsG0380014137.01.T01:CDS 15.0%
!!! TTTTGAATTATTGTTATTAG+TGG - Chr3:50253740-50253759 MsG0380014137.01.T01:CDS 15.0%
!! TCACAATTTAAACACATAAA+AGG + Chr3:50253453-50253472 None:intergenic 20.0%
! AATTCTGATACTACTTTGAA+AGG - Chr3:50252383-50252402 MsG0380014137.01.T01:CDS 25.0%
! GAATAATAAAACAGAAAACC+AGG - Chr3:50253585-50253604 MsG0380014137.01.T01:CDS 25.0%
! TAAGCATTCAATAATCAGAA+AGG + Chr3:50253709-50253728 None:intergenic 25.0%
! TATGATAATAATAATCCTGC+TGG + Chr3:50253774-50253793 None:intergenic 25.0%
!! TCAGAAGAAGATTGATAATT+TGG + Chr3:50252926-50252945 None:intergenic 25.0%
AAGGGAATCAAATGATGTAA+TGG - Chr3:50252289-50252308 MsG0380014137.01.T01:three_prime_UTR 30.0%
AATATTCACGAAGTAGACAT+TGG - Chr3:50253263-50253282 MsG0380014137.01.T01:CDS 30.0%
AATGTCTACTTCGTGAATAT+TGG + Chr3:50253264-50253283 None:intergenic 30.0%
ACACATAAAAGGCTAATCAT+AGG + Chr3:50253442-50253461 None:intergenic 30.0%
GAAATCAACAAAACCCAATA+AGG + Chr3:50253891-50253910 None:intergenic 30.0%
GAATCAAATGATGTAATGGT+GGG - Chr3:50252293-50252312 MsG0380014137.01.T01:three_prime_UTR 30.0%
TAATCATAGGAAACAGATCA+TGG + Chr3:50253429-50253448 None:intergenic 30.0%
TGATATGCTGTAATGTGATA+AGG - Chr3:50253555-50253574 MsG0380014137.01.T01:CDS 30.0%
TTCTTAATTAGCGTGAATCT+AGG + Chr3:50253507-50253526 None:intergenic 30.0%
! ATTAAACTTGCAAGCCTTAT+TGG - Chr3:50253874-50253893 MsG0380014137.01.T01:CDS 30.0%
! GAAGAAGATTGATAATTTGG+AGG + Chr3:50252923-50252942 None:intergenic 30.0%
! TCCAACCTAACTTTTCAAAT+GGG - Chr3:50252732-50252751 MsG0380014137.01.T01:intron 30.0%
! TTCCAACCTAACTTTTCAAA+TGG - Chr3:50252731-50252750 MsG0380014137.01.T01:intron 30.0%
! TTGGATGATATAAGGAGTTT+TGG - Chr3:50253643-50253662 MsG0380014137.01.T01:CDS 30.0%
!! AAAGGATTAGTCTTTAAGTC+TGG - Chr3:50252401-50252420 MsG0380014137.01.T01:CDS 30.0%
!! TTAAACTTGCAAGCCTTATT+GGG - Chr3:50253875-50253894 MsG0380014137.01.T01:CDS 30.0%
AACCAAAATAATACGCCAGA+TGG - Chr3:50252083-50252102 MsG0380014137.01.T01:three_prime_UTR 35.0%
ATTGAAACCCTTCCAGTAAA+TGG - Chr3:50252572-50252591 MsG0380014137.01.T01:intron 35.0%
CATCATTTGATTCCCTTTCT+TGG + Chr3:50252286-50252305 None:intergenic 35.0%
GAAACTGATTAGGTCTTGAA+GGG + Chr3:50252502-50252521 None:intergenic 35.0%
GGAATCAAATGATGTAATGG+TGG - Chr3:50252292-50252311 MsG0380014137.01.T01:three_prime_UTR 35.0%
TATTTGCTCAGTGTTAGAGT+TGG - Chr3:50252359-50252378 MsG0380014137.01.T01:CDS 35.0%
TCCCATTTGAAAAGTTAGGT+TGG + Chr3:50252736-50252755 None:intergenic 35.0%
TCTAACACTGAGCAAATATC+CGG + Chr3:50252357-50252376 None:intergenic 35.0%
TCTCGAGAAAATGGATGTAA+TGG - Chr3:50252994-50253013 MsG0380014137.01.T01:CDS 35.0%
TGAAACTGATTAGGTCTTGA+AGG + Chr3:50252503-50252522 None:intergenic 35.0%
TGATGTGCTGAATAAAATCG+AGG - Chr3:50252943-50252962 MsG0380014137.01.T01:CDS 35.0%
TGTTCACAAATTCAAGCAGT+CGG + Chr3:50253390-50253409 None:intergenic 35.0%
! AACCATCTGGCGTATTATTT+TGG + Chr3:50252088-50252107 None:intergenic 35.0%
! AGAGGAGTTTGAAACTGATT+AGG + Chr3:50252512-50252531 None:intergenic 35.0%
! GAGACAAGTTGGATGATATA+AGG - Chr3:50253635-50253654 MsG0380014137.01.T01:CDS 35.0%
! GTTGTCCATTCTTTTCCTTT+GGG + Chr3:50252535-50252554 None:intergenic 35.0%
! TAACTTTTCAAATGGGATGC+CGG - Chr3:50252739-50252758 MsG0380014137.01.T01:intron 35.0%
! TAGTTGATCGTTAATTTGGC+CGG + Chr3:50252684-50252703 None:intergenic 35.0%
! TGGCTAGTTGATCGTTAATT+TGG + Chr3:50252688-50252707 None:intergenic 35.0%
!! AAGTTAGGTTGGAACAAAAC+AGG + Chr3:50252725-50252744 None:intergenic 35.0%
!! AGCAGTTAGTTCTAGTAACT+TGG - Chr3:50252625-50252644 MsG0380014137.01.T01:intron 35.0%
!! TGTTGATTTCACTTGGAAGT+TGG - Chr3:50253901-50253920 MsG0380014137.01.T01:CDS 35.0%
!! TTCAATTCTAGAAGCACTCA+CGG + Chr3:50252558-50252577 None:intergenic 35.0%
!!! GATATAAGGAGTTTTGGAAC+TGG - Chr3:50253649-50253668 MsG0380014137.01.T01:CDS 35.0%
!!! GTATTTTTTTGACGTGCGAT+TGG + Chr3:50253296-50253315 None:intergenic 35.0%
!!! TGGGTTTTGTTGATTTCACT+TGG - Chr3:50253894-50253913 MsG0380014137.01.T01:CDS 35.0%
AAATTCAAGCAGTCGGTCAT+CGG + Chr3:50253383-50253402 None:intergenic 40.0%
AATAATACGCCAGATGGTTC+AGG - Chr3:50252089-50252108 MsG0380014137.01.T01:three_prime_UTR 40.0%
ACGGAAATCAACACCTTCAA+AGG - Chr3:50252258-50252277 MsG0380014137.01.T01:three_prime_UTR 40.0%
ACTGTGAACCATTTACTGGA+AGG + Chr3:50252583-50252602 None:intergenic 40.0%
ATTAACGATCAACTAGCCAG+AGG - Chr3:50252689-50252708 MsG0380014137.01.T01:intron 40.0%
CGGAAATCAACACCTTCAAA+GGG - Chr3:50252259-50252278 MsG0380014137.01.T01:three_prime_UTR 40.0%
CTGTGAACCATTTACTGGAA+GGG + Chr3:50252582-50252601 None:intergenic 40.0%
GAATACTGCCTCAATTACAC+CGG + Chr3:50252330-50252349 None:intergenic 40.0%
GATTGTGGGAAAGGAAATTC+CGG - Chr3:50252811-50252830 MsG0380014137.01.T01:CDS 40.0%
GGCATCCCATTTGAAAAGTT+AGG + Chr3:50252740-50252759 None:intergenic 40.0%
TAGCATGACTCTCGAGAAAA+TGG - Chr3:50252985-50253004 MsG0380014137.01.T01:CDS 40.0%
TCAGTGCAGTCAGAAACTTT+GGG + Chr3:50253175-50253194 None:intergenic 40.0%
TGATTAGGTCTTGAAGGGAA+GGG + Chr3:50252497-50252516 None:intergenic 40.0%
TTCAGTGCAGTCAGAAACTT+TGG + Chr3:50253176-50253195 None:intergenic 40.0%
TTGCAGGTACAACAAGAAAC+AGG - Chr3:50253217-50253236 MsG0380014137.01.T01:CDS 40.0%
TTGCTTGGACTTGGCATATA+GGG + Chr3:50252182-50252201 None:intergenic 40.0%
TTGTGAACATTCTGACTGCA+GGG - Chr3:50253401-50253420 MsG0380014137.01.T01:CDS 40.0%
TTTGCTTGGACTTGGCATAT+AGG + Chr3:50252183-50252202 None:intergenic 40.0%
TTTGTGAACATTCTGACTGC+AGG - Chr3:50253400-50253419 MsG0380014137.01.T01:CDS 40.0%
! AGTGTTTGATTTCCATCTGC+CGG + Chr3:50252833-50252852 None:intergenic 40.0%
! CAAAATGACTGAGCTTTTGC+AGG - Chr3:50253201-50253220 MsG0380014137.01.T01:CDS 40.0%
! GGTTGTCCATTCTTTTCCTT+TGG + Chr3:50252536-50252555 None:intergenic 40.0%
!! TCAATTCTAGAAGCACTCAC+GGG + Chr3:50252557-50252576 None:intergenic 40.0%
!! TGGCTTTGTCTACTTGCATA+GGG + Chr3:50253075-50253094 None:intergenic 40.0%
!! TTGGCTTTGTCTACTTGCAT+AGG + Chr3:50253076-50253095 None:intergenic 40.0%
AACAGGCATCACATTACCTC+TGG + Chr3:50252708-50252727 None:intergenic 45.0%
ACAAGAAACAGGATTCCCTG+CGG - Chr3:50253228-50253247 MsG0380014137.01.T01:CDS 45.0%
ACCTTCAAAGGGTCCAAGAA+AGG - Chr3:50252270-50252289 MsG0380014137.01.T01:three_prime_UTR 45.0%
ACTAGAACTAACTGCTCCTC+TGG + Chr3:50252621-50252640 None:intergenic 45.0%
AGTAGACAAAGCCAATGACG+TGG - Chr3:50253081-50253100 MsG0380014137.01.T01:CDS 45.0%
ATTGAGGCAGTATTCGATGC+CGG - Chr3:50252335-50252354 MsG0380014137.01.T01:CDS 45.0%
CCTCTCCCAAAGGAAAAGAA+TGG - Chr3:50252527-50252546 MsG0380014137.01.T01:intron 45.0%
CCTTCAAAGGGTCCAAGAAA+GGG - Chr3:50252271-50252290 MsG0380014137.01.T01:three_prime_UTR 45.0%
CGCTACTTGGAAATGAGTTC+TGG + Chr3:50252880-50252899 None:intergenic 45.0%
CTAGAACTAACTGCTCCTCT+GGG + Chr3:50252620-50252639 None:intergenic 45.0%
CTGATTAGGTCTTGAAGGGA+AGG + Chr3:50252498-50252517 None:intergenic 45.0%
CTGTGGATCATTGGAATACC+TGG + Chr3:50252464-50252483 None:intergenic 45.0%
GAAATTGGGGCGACTTGTAA+TGG + Chr3:50252776-50252795 None:intergenic 45.0%
GCAGACTGTGAACCATTTAC+TGG + Chr3:50252587-50252606 None:intergenic 45.0%
GGATGGTCTACATTTACGCT+CGG + Chr3:50253347-50253366 None:intergenic 45.0%
GTAGACAAAGCCAATGACGT+GGG - Chr3:50253082-50253101 MsG0380014137.01.T01:CDS 45.0%
GTCATCGGTAGTCGTTCAAT+CGG + Chr3:50253368-50253387 None:intergenic 45.0%
GTTTCAAACTCCTCTCCCAA+AGG - Chr3:50252517-50252536 MsG0380014137.01.T01:intron 45.0%
GTTTCTGACTGCACTGAAAC+TGG - Chr3:50253178-50253197 MsG0380014137.01.T01:CDS 45.0%
TGTGAACATTCTGACTGCAG+GGG - Chr3:50253402-50253421 MsG0380014137.01.T01:CDS 45.0%
TTGTCTACTTGCATAGGGCT+TGG + Chr3:50253070-50253089 None:intergenic 45.0%
! AGAAACTTTGGGAGCAGAAG+CGG + Chr3:50253164-50253183 None:intergenic 45.0%
! TGCAGAGGCTGATTCAAAAC+AGG + Chr3:50253112-50253131 None:intergenic 45.0%
! TTAATTTGGCCGGTTACCGA+AGG + Chr3:50252674-50252693 None:intergenic 45.0%
! TTCTGGCTAGTAGTTTGAGC+AGG + Chr3:50252863-50252882 None:intergenic 45.0%
!! AAATGATGTAATGGTGGGCC+AGG - Chr3:50252298-50252317 MsG0380014137.01.T01:three_prime_UTR 45.0%
!! CCATTCTTTTCCTTTGGGAG+AGG + Chr3:50252530-50252549 None:intergenic 45.0%
!! GATGTAATGGACACCAAGAC+TGG - Chr3:50253007-50253026 MsG0380014137.01.T01:CDS 45.0%
!! TGTTTTGAATCAGCCTCTGC+AGG - Chr3:50253111-50253130 MsG0380014137.01.T01:CDS 45.0%
!!! ACAGGAGTCTGCTTTTTGCT+TGG + Chr3:50252197-50252216 None:intergenic 45.0%
!!! GTCTGCTTTTTGCTTGGACT+TGG + Chr3:50252191-50252210 None:intergenic 45.0%
AAGACTGGAAACACCATGCC+TGG - Chr3:50253022-50253041 MsG0380014137.01.T01:CDS 50.0%
ACATCATTCTCGGGGCAAAC+AGG + Chr3:50252437-50252456 None:intergenic 50.0%
ACCGAAGGAACGCTCATTCT+GGG + Chr3:50252659-50252678 None:intergenic 50.0%
ACCTCGGTTCTGTGGATCAT+TGG + Chr3:50252473-50252492 None:intergenic 50.0%
ACCTGGAGCCACATCATTCT+CGG + Chr3:50252447-50252466 None:intergenic 50.0%
ACGCCACTCGCAAGAGAAAT+TGG + Chr3:50252791-50252810 None:intergenic 50.0%
AGGCATGGTGTTTCCAGTCT+TGG + Chr3:50253023-50253042 None:intergenic 50.0%
ATACCCAAGGCCAGATTCAG+TGG - Chr3:50252151-50252170 MsG0380014137.01.T01:three_prime_UTR 50.0%
ATGAGCGTTCCTTCGGTAAC+CGG - Chr3:50252662-50252681 MsG0380014137.01.T01:intron 50.0%
ATTGGAAAATCCCGACCGCA+GGG + Chr3:50253246-50253265 None:intergenic 50.0%
ATTGGGGCGACTTGTAATGG+TGG + Chr3:50252773-50252792 None:intergenic 50.0%
CAATTACACCGGAAACAGCC+TGG + Chr3:50252319-50252338 None:intergenic 50.0%
CACTGTATTATCGCCAGGCA+TGG + Chr3:50253038-50253057 None:intergenic 50.0%
CATGCCTGGCGATAATACAG+TGG - Chr3:50253036-50253055 MsG0380014137.01.T01:CDS 50.0%
CCAAGTAGCGTGCAAAGTGA+AGG - Chr3:50252890-50252909 MsG0380014137.01.T01:CDS 50.0%
CCCTTTCTTGGACCCTTTGA+AGG + Chr3:50252274-50252293 None:intergenic 50.0%
CCTGGGCATCAAGCAGTTAA+CGG - Chr3:50252239-50252258 MsG0380014137.01.T01:three_prime_UTR 50.0%
CCTTCACTTTGCACGCTACT+TGG + Chr3:50252893-50252912 None:intergenic 50.0%
CGCCACTCGCAAGAGAAATT+GGG + Chr3:50252790-50252809 None:intergenic 50.0%
GCCACTCGCAAGAGAAATTG+GGG + Chr3:50252789-50252808 None:intergenic 50.0%
GCTAGTAGTTTGAGCAGGAG+GGG + Chr3:50252858-50252877 None:intergenic 50.0%
GGAAAGGAAATTCCGGCAGA+TGG - Chr3:50252818-50252837 MsG0380014137.01.T01:CDS 50.0%
GGAACTGGACTTCAAGATGC+TGG - Chr3:50253664-50253683 MsG0380014137.01.T01:CDS 50.0%
GGCTAGTAGTTTGAGCAGGA+GGG + Chr3:50252859-50252878 None:intergenic 50.0%
GGCTGTACAGTCTCATGTTG+AGG - Chr3:50253132-50253151 MsG0380014137.01.T01:CDS 50.0%
TACCGAAGGAACGCTCATTC+TGG + Chr3:50252660-50252679 None:intergenic 50.0%
TAGGGACTCTCCACTGAATC+TGG + Chr3:50252164-50252183 None:intergenic 50.0%
TATTGGAAAATCCCGACCGC+AGG + Chr3:50253247-50253266 None:intergenic 50.0%
TCCAATGATCCACAGAACCG+AGG - Chr3:50252469-50252488 MsG0380014137.01.T01:intron 50.0%
TCCCAGAATGAGCGTTCCTT+CGG - Chr3:50252655-50252674 MsG0380014137.01.T01:intron 50.0%
TCGAGAGTCATGCTAGCTAC+TGG + Chr3:50252980-50252999 None:intergenic 50.0%
TCGGTAGTCGTTCAATCGGA+TGG + Chr3:50253364-50253383 None:intergenic 50.0%
TCTTGAAGGGAAGGGAACCT+CGG + Chr3:50252489-50252508 None:intergenic 50.0%
TGGCGATAATACAGTGGCGA+AGG - Chr3:50253042-50253061 MsG0380014137.01.T01:CDS 50.0%
TGGCTAGTAGTTTGAGCAGG+AGG + Chr3:50252860-50252879 None:intergenic 50.0%
TGTTTGCCCCGAGAATGATG+TGG - Chr3:50252436-50252455 MsG0380014137.01.T01:CDS 50.0%
TTAACTGCTTGATGCCCAGG+AGG + Chr3:50252239-50252258 None:intergenic 50.0%
TTAGTGGCTATTGTGCCAGC+AGG - Chr3:50253756-50253775 MsG0380014137.01.T01:CDS 50.0%
TTCGCCACTGTATTATCGCC+AGG + Chr3:50253043-50253062 None:intergenic 50.0%
! AACAGGTTGACCCACGTCAT+TGG + Chr3:50253095-50253114 None:intergenic 50.0%
! GGCTGTTTCCGGTGTAATTG+AGG - Chr3:50252319-50252338 MsG0380014137.01.T01:exon 50.0%
! TCTCCACTGAATCTGGCCTT+GGG + Chr3:50252157-50252176 None:intergenic 50.0%
! TGTAATGGTGGAGTGGACAC+CGG + Chr3:50252761-50252780 None:intergenic 50.0%
AAACAGGATTCCCTGCGGTC+GGG - Chr3:50253233-50253252 MsG0380014137.01.T01:CDS 55.0%
AAAGCAGCAGAGGCAGGATC+TGG - Chr3:50253613-50253632 MsG0380014137.01.T01:CDS 55.0%
CCAGGAATCCAAAGCAGCAG+AGG - Chr3:50253603-50253622 MsG0380014137.01.T01:CDS 55.0%
CCGTTAACTGCTTGATGCCC+AGG + Chr3:50252242-50252261 None:intergenic 55.0%
CCTGGAGCCACATCATTCTC+GGG + Chr3:50252446-50252465 None:intergenic 55.0%
CGACCACGTTTGCGCTTCAT+AGG + Chr3:50252122-50252141 None:intergenic 55.0%
CTCTCCACTGAATCTGGCCT+TGG + Chr3:50252158-50252177 None:intergenic 55.0%
CTGGAGCCACATCATTCTCG+GGG + Chr3:50252445-50252464 None:intergenic 55.0%
CTTGCGAGTGGCGTGATTGT+GGG - Chr3:50252797-50252816 MsG0380014137.01.T01:CDS 55.0%
GAAACAGGATTCCCTGCGGT+CGG - Chr3:50253232-50253251 MsG0380014137.01.T01:CDS 55.0%
GAATCCAAAGCAGCAGAGGC+AGG - Chr3:50253607-50253626 MsG0380014137.01.T01:CDS 55.0%
GAGTGGCGTGATTGTGGGAA+AGG - Chr3:50252802-50252821 MsG0380014137.01.T01:CDS 55.0%
GCCCCAATTTCTCTTGCGAG+TGG - Chr3:50252785-50252804 MsG0380014137.01.T01:CDS 55.0%
GGCACATCTCCTGAACCATC+TGG + Chr3:50252101-50252120 None:intergenic 55.0%
GGCAGGATCTGGAGACAAGT+TGG - Chr3:50253624-50253643 MsG0380014137.01.T01:CDS 55.0%
GTGCCTATGAAGCGCAAACG+TGG - Chr3:50252116-50252135 MsG0380014137.01.T01:three_prime_UTR 55.0%
TCTTGCGAGTGGCGTGATTG+TGG - Chr3:50252796-50252815 MsG0380014137.01.T01:CDS 55.0%
TGAGACTGTACAGCCTGCAG+AGG + Chr3:50253127-50253146 None:intergenic 55.0%
! AGATCCTGCCTCTGCTGCTT+TGG + Chr3:50253614-50253633 None:intergenic 55.0%
! AGGAACGCTCATTCTGGGAG+CGG + Chr3:50252654-50252673 None:intergenic 55.0%
! GGCGACTTGTAATGGTGGAG+TGG + Chr3:50252768-50252787 None:intergenic 55.0%
!! CCTCTGCTGCTTTGGATTCC+TGG + Chr3:50253606-50253625 None:intergenic 55.0%
!! CTGGCCTTGGGTATTTCCGT+GGG + Chr3:50252145-50252164 None:intergenic 55.0%
!! TCTGGCCTTGGGTATTTCCG+TGG + Chr3:50252146-50252165 None:intergenic 55.0%
ACTGCTTGATGCCCAGGAGG+TGG + Chr3:50252236-50252255 None:intergenic 60.0%
CCCGAGAATGATGTGGCTCC+AGG - Chr3:50252443-50252462 MsG0380014137.01.T01:intron 60.0%
CTGCTTGATGCCCAGGAGGT+GGG + Chr3:50252235-50252254 None:intergenic 60.0%
GGAAGGGAACCTCGGTTCTG+TGG + Chr3:50252481-50252500 None:intergenic 60.0%
GTCGCCCACGGAAATACCCA+AGG - Chr3:50252138-50252157 MsG0380014137.01.T01:three_prime_UTR 60.0%
TGCTTGATGCCCAGGAGGTG+GGG + Chr3:50252234-50252253 None:intergenic 60.0%
TGGTTCACAGTCTGCCCCTC+TGG - Chr3:50252592-50252611 MsG0380014137.01.T01:intron 60.0%
TTGAACCAGCCCCACCTCCT+GGG - Chr3:50252222-50252241 MsG0380014137.01.T01:three_prime_UTR 60.0%
! ACTGCTCCTCTGGGAACCAG+AGG + Chr3:50252611-50252630 None:intergenic 60.0%
! CTGCTCCTCTGGGAACCAGA+GGG + Chr3:50252610-50252629 None:intergenic 60.0%
! TGCTCCTCTGGGAACCAGAG+GGG + Chr3:50252609-50252628 None:intergenic 60.0%
!! ATGGTGGGCCAGGCTGTTTC+CGG - Chr3:50252308-50252327 MsG0380014137.01.T01:exon 60.0%
!! GGGGCTGGTTCAACACGAAC+AGG + Chr3:50252215-50252234 None:intergenic 60.0%
AGCGCAAACGTGGTCGCCCA+CGG - Chr3:50252126-50252145 MsG0380014137.01.T01:three_prime_UTR 65.0%
GTTGAACCAGCCCCACCTCC+TGG - Chr3:50252221-50252240 MsG0380014137.01.T01:three_prime_UTR 65.0%
! TCTGCCCCTCTGGTTCCCAG+AGG - Chr3:50252602-50252621 MsG0380014137.01.T01:intron 65.0%
TGATGCCCAGGAGGTGGGGC+TGG + Chr3:50252230-50252249 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 50252071 50253963 50252071 ID=MsG0380014137.01;Name=MsG0380014137.01
Chr3 mRNA 50252071 50253963 50252071 ID=MsG0380014137.01.T01;Parent=MsG0380014137.01;Name=MsG0380014137.01.T01;_AED=0.36;_eAED=0.36;_QI=0|0|0.5|1|1|1|2|249|438
Chr3 exon 50252071 50252457 50252071 ID=MsG0380014137.01.T01:exon:9637;Parent=MsG0380014137.01.T01
Chr3 exon 50252785 50253963 50252785 ID=MsG0380014137.01.T01:exon:9636;Parent=MsG0380014137.01.T01
Chr3 CDS 50252785 50253963 50252785 ID=MsG0380014137.01.T01:cds;Parent=MsG0380014137.01.T01
Chr3 CDS 50252320 50252457 50252320 ID=MsG0380014137.01.T01:cds;Parent=MsG0380014137.01.T01
Chr3 three_prime_UTR 50252071 50252319 50252071 ID=MsG0380014137.01.T01:three_prime_utr;Parent=MsG0380014137.01.T01
Gene Sequence

>MsG0380014137.01.T01

ATGGAGCAACAAAACCAAAATAATACGCCAGATGGTTCAGGAGATGTGCCTATGAAGCGCAAACGTGGTCGCCCACGGAAATACCCAAGGCCAGATTCAGTGGAGAGTCCCTATATGCCAAGTCCAAGCAAAAAGCAGACTCCTGTTCGTGTTGAACCAGCCCCACCTCCTGGGCATCAAGCAGTTAACGGAAATCAACACCTTCAAAGGGTCCAAGAAAGGGAATCAAATGATGTAATGGTGGGCCAGGCTGTTTCCGGTGTAATTGAGGCAGTATTCGATGCCGGATATTTGCTCAGTGTTAGAGTTGGTAATTCTGATACTACTTTGAAAGGATTAGTCTTTAAGTCTGGACATTTTGTTCCTGTTTGCCCCGAGAATGATGTGGCTCCAGGTATTCCAATGATCCACAGAACCGAGGTTCCCTTCCCTTCAAGACCTAATCAGTTTCAAACTCCTCTCCCAAAGGAAAAGAATGGACAACCCGTGAGTGCTTCTAGAATTGAAACCCTTCCAGTAAATGGTTCACAGTCTGCCCCTCTGGTTCCCAGAGGAGCAGTTAGTTCTAGTAACTTGGTTGCCGCTCCCAGAATGAGCGTTCCTTCGGTAACCGGCCAAATTAACGATCAACTAGCCAGAGGTAATGTGATGCCTGTTTTGTTCCAACCTAACTTTTCAAATGGGATGCCGGTGTCCACTCCACCATTACAAGTCGCCCCAATTTCTCTTGCGAGTGGCGTGATTGTGGGAAAGGAAATTCCGGCAGATGGAAATCAAACACTCACCCCTCCTGCTCAAACTACTAGCCAGAACTCATTTCCAAGTAGCGTGCAAAGTGAAGGTGTTATTCCTCCAAATTATCAATCTTCTTCTGATGTGCTGAATAAAATCGAGGACAAATCATTACCAGTAGCTAGCATGACTCTCGAGAAAATGGATGTAATGGACACCAAGACTGGAAACACCATGCCTGGCGATAATACAGTGGCGAAGGATCCAAGCCCTATGCAAGTAGACAAAGCCAATGACGTGGGTCAACCTGTTTTGAATCAGCCTCTGCAGGCTGTACAGTCTCATGTTGAGGAAAATTCCGCTTCTGCTCCCAAAGTTTCTGACTGCACTGAAACTGGCAAAATGACTGAGCTTTTGCAGGTACAACAAGAAACAGGATTCCCTGCGGTTTTGCAGAATAATAAAACAGAAAACCAGGAATCCAAAGCAGCAGAGGCAGGATCTGGAGACAAGTTGGATGATATAAGGAGTTTTGGAACTGGACTTCAAGATGCTGGAACTGTTAATTCAACAAATCCTTTCTGA
Protein sequence

>MsG0380014137.01.T01

MEQQNQNNTPDGSGDVPMKRKRGRPRKYPRPDSVESPYMPSPSKKQTPVRVEPAPPPGHQAVNGNQHLQRVQERESNDVMVGQAVSGVIEAVFDAGYLLSVRVGNSDTTLKGLVFKSGHFVPVCPENDVAPGIPMIHRTEVPFPSRPNQFQTPLPKEKNGQPVSASRIETLPVNGSQSAPLVPRGAVSSSNLVAAPRMSVPSVTGQINDQLARGNVMPVLFQPNFSNGMPVSTPPLQVAPISLASGVIVGKEIPADGNQTLTPPAQTTSQNSFPSSVQSEGVIPPNYQSSSDVLNKIEDKSLPVASMTLEKMDVMDTKTGNTMPGDNTVAKDPSPMQVDKANDVGQPVLNQPLQAVQSHVEENSASAPKVSDCTETGKMTELLQVQQETGFPAVLQNNKTENQESKAAEAGSGDKLDDIRSFGTGLQDAGTVNSTNPF*