AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024031.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024031.01.T01 MTR_8g039190 78.346 254 6 1 1 205 273 526 4.52e-134 387
MsG0580024031.01.T01 MTR_8g039070 81.513 238 11 1 1 205 253 490 6.41e-133 383
MsG0580024031.01.T01 MTR_5g080050 67.206 247 31 2 2 198 276 522 1.64e-107 319
MsG0580024031.01.T01 MTR_5g082760 65.182 247 37 1 1 198 286 532 2.05e-107 319
MsG0580024031.01.T01 MTR_4g030040 54.237 236 56 2 1 187 272 504 2.13e-72 228
MsG0580024031.01.T01 MTR_4g030040 54.237 236 56 2 1 187 273 505 2.50e-72 228
MsG0580024031.01.T01 MTR_4g030210 55.085 236 53 4 1 187 278 509 2.74e-71 226
MsG0580024031.01.T01 MTR_8g447340 31.140 228 107 1 10 187 291 518 3.53e-33 125
MsG0580024031.01.T01 MTR_2g081930 33.065 124 78 2 63 184 403 523 8.27e-13 67.0
MsG0580024031.01.T01 MTR_2g081950 32.773 119 75 2 63 179 285 400 1.16e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024031.01.T01 AT1G16390 37.561 205 78 1 35 189 308 512 1.12e-41 148
MsG0580024031.01.T01 AT1G79360 33.725 255 110 6 1 196 270 524 6.15e-36 132
MsG0580024031.01.T01 AT1G79410 32.932 249 104 7 1 195 275 514 7.78e-27 107
MsG0580024031.01.T01 AT1G16370 29.268 246 114 6 1 193 280 518 1.10e-23 98.6
MsG0580024031.01.T01 AT1G73220 32.212 208 83 3 38 187 322 529 4.86e-23 97.1
MsG0580024031.01.T01 AT3G20660 31.783 129 83 2 61 187 389 514 3.77e-12 65.5

Find 22 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGATAGCTGTTATGATTCT+TGG 0.200882 5:-4735 MsG0580024031.01.T01:CDS
CCTCCCCGCCGATATCAAAA+AGG 0.267652 5:+4334 None:intergenic
CAAAATGAACAATGTAAAAT+TGG 0.272354 5:+4262 None:intergenic
TTGTGTGATGTGTGCTGTTT+TGG 0.274294 5:-4528 MsG0580024031.01.T01:CDS
ATTTACTCATATGGTGTGTT+TGG 0.306270 5:-4302 MsG0580024031.01.T01:CDS
GCTGTTATGATTCTTGGAAT+TGG 0.328512 5:-4729 MsG0580024031.01.T01:CDS
TTTCAACTTTACTCATCAAT+AGG 0.345221 5:-4792 MsG0580024031.01.T01:CDS
GGACTTGGAATGGTTTATTT+CGG 0.368666 5:-4708 MsG0580024031.01.T01:intron
GAGAATTGTTTCATAAAAGA+TGG 0.402166 5:-4770 MsG0580024031.01.T01:CDS
GTGAGACAAGCTATTGTGTT+TGG 0.405620 5:-4371 MsG0580024031.01.T01:CDS
ATGATTCTTGGAATTGGACT+TGG 0.469021 5:-4723 MsG0580024031.01.T01:CDS
TAGAGTACCAGCTGCTAAAG+TGG 0.490859 5:-4501 MsG0580024031.01.T01:CDS
AGAACAATCCCTATAGTCTC+TGG 0.504851 5:+4239 None:intergenic
GATTGTTCTTTGTGATACAA+TGG 0.520244 5:-4225 MsG0580024031.01.T01:CDS
GCTAAAGCCACTTTAGCAGC+TGG 0.522596 5:+4494 None:intergenic
TCTTGGAATTGGACTTGGAA+TGG 0.524447 5:-4718 MsG0580024031.01.T01:CDS
AGAATTGTTTCATAAAAGAT+GGG 0.525041 5:-4769 MsG0580024031.01.T01:CDS
TGCTAAAGTGGCTTTAGCAA+TGG 0.540112 5:-4489 MsG0580024031.01.T01:CDS
TTCTTTATGAATAGGCGCAA+TGG 0.558481 5:-2580 MsG0580024031.01.T01:intron
GAGGAACACAACAACGTCGT+TGG 0.627045 5:-4393 MsG0580024031.01.T01:CDS
GTTGTGTTCCTCACACATGT+CGG 0.637523 5:+4404 None:intergenic
AGTTGTTTCCGACATGTGTG+AGG 0.640373 5:-4412 MsG0580024031.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAATTCTTC+TGG - Chr5:3447-3466 MsG0580024031.01.T01:intron 10.0%
!! ATAATTAAATTGGTTATAAA+TGG + Chr5:3493-3512 None:intergenic 10.0%
!!! AGAAGAATTTTTTTTTTTTT+TGG + Chr5:3448-3467 None:intergenic 10.0%
!! AAAAACAATATTTACTCATA+TGG - Chr5:3120-3139 MsG0580024031.01.T01:intron 15.0%
!! ACAACAAATAAACAAATTAT+TGG - Chr5:3600-3619 MsG0580024031.01.T01:intron 15.0%
!! GTTAATAATGATAAATTCTT+TGG - Chr5:3412-3431 MsG0580024031.01.T01:intron 15.0%
!! TCCTAAATATAAAAGAAATT+TGG + Chr5:4295-4314 None:intergenic 15.0%
!! TTAAATTTAAATCGAATGAT+AGG - Chr5:4407-4426 MsG0580024031.01.T01:CDS 15.0%
!!! AAAAATGAAACTTTTTCTTT+TGG + Chr5:2621-2640 None:intergenic 15.0%
!!! AAAATGAAACTTTTTCTTTT+GGG + Chr5:2620-2639 None:intergenic 15.0%
!! AAATAAACAAATTATTGGCA+AGG - Chr5:3605-3624 MsG0580024031.01.T01:intron 20.0%
!! AAATAATTGAGATTGGATTA+AGG + Chr5:4518-4537 None:intergenic 20.0%
!! AAGGAATTTATTACCATAAA+AGG + Chr5:4030-4049 None:intergenic 20.0%
!! AATAAACAAATTATTGGCAA+GGG - Chr5:3606-3625 MsG0580024031.01.T01:intron 20.0%
!! ACTCATGTTCATAATTAAAT+TGG + Chr5:3503-3522 None:intergenic 20.0%
!! AGAATTGTTTCATAAAAGAT+GGG - Chr5:2662-2681 MsG0580024031.01.T01:intron 20.0%
!! AGTTAAAAAACCTACAAATT+TGG + Chr5:3345-3364 None:intergenic 20.0%
!! ATGAATCAACATGAAAAAAT+AGG - Chr5:3267-3286 MsG0580024031.01.T01:intron 20.0%
!! ATTGGTTATAAATGGAAATA+TGG + Chr5:3485-3504 None:intergenic 20.0%
!! CAAAATGAACAATGTAAAAT+TGG + Chr5:3172-3191 None:intergenic 20.0%
!! TCCTTCTTAAAATGTTTAAT+AGG - Chr5:4161-4180 MsG0580024031.01.T01:CDS 20.0%
!! TTCTTAGTTAAAGACAAATA+TGG + Chr5:3806-3825 None:intergenic 20.0%
!!! AAACTTTGTTGACTTATTTA+TGG + Chr5:4007-4026 None:intergenic 20.0%
!!! AAATGAAACTTTTTCTTTTG+GGG + Chr5:2619-2638 None:intergenic 20.0%
!!! AGATATAATGTTCAAAGTTT+TGG - Chr5:4338-4357 MsG0580024031.01.T01:CDS 20.0%
!!! ATTATGAACATGAGTTTTTA+TGG - Chr5:3508-3527 MsG0580024031.01.T01:intron 20.0%
!!! CAACATCAACTTTATTTTAA+GGG + Chr5:4097-4116 None:intergenic 20.0%
!!! GCCAAATTTCTTTTATATTT+AGG - Chr5:4291-4310 MsG0580024031.01.T01:CDS 20.0%
!!! GGATTAAGGATATTTTATTA+TGG + Chr5:4504-4523 None:intergenic 20.0%
!!! TATTTTTTCATGTTGATTCA+TGG + Chr5:3268-3287 None:intergenic 20.0%
!!! TCAACATCAACTTTATTTTA+AGG + Chr5:4098-4117 None:intergenic 20.0%
!!! TCTTTTATATTTAGGATTGA+AGG - Chr5:4299-4318 MsG0580024031.01.T01:CDS 20.0%
!!! TTTAGGATTCAACATTTATT+TGG - Chr5:2767-2786 MsG0580024031.01.T01:intron 20.0%
! AAAAATTCAAAAATGTGTGC+GGG - Chr5:4762-4781 MsG0580024031.01.T01:CDS 25.0%
! ATAGAAAACACAAGAATTGA+AGG + Chr5:2868-2887 None:intergenic 25.0%
! CAAAAATTCAAAAATGTGTG+CGG - Chr5:4761-4780 MsG0580024031.01.T01:CDS 25.0%
! CTAAGAAATTTGAAAATGTG+TGG - Chr5:3555-3574 MsG0580024031.01.T01:intron 25.0%
! CTGATTAAGGTTACTAAAAA+AGG - Chr5:3939-3958 MsG0580024031.01.T01:intron 25.0%
! CTGGTTAACAATACAAAAAA+AGG + Chr5:4049-4068 None:intergenic 25.0%
! GAGAATTGTTTCATAAAAGA+TGG - Chr5:2661-2680 MsG0580024031.01.T01:intron 25.0%
! GTTCATGCTAATTAAAACAA+GGG - Chr5:3892-3911 MsG0580024031.01.T01:intron 25.0%
! TTAAAATGTTTAATAGGCAG+AGG - Chr5:4167-4186 MsG0580024031.01.T01:CDS 25.0%
! TTGTCTTTAACTAAGAAGAT+AGG - Chr5:3809-3828 MsG0580024031.01.T01:intron 25.0%
! TTTCAACTTTACTCATCAAT+AGG - Chr5:2639-2658 MsG0580024031.01.T01:intron 25.0%
!! AGTTTTTATGGTATCTTTGT+TGG - Chr5:3520-3539 MsG0580024031.01.T01:intron 25.0%
!! ATTCTTGTGTTTTCTATCTT+AGG - Chr5:2871-2890 MsG0580024031.01.T01:intron 25.0%
!!! AATGAAACTTTTTCTTTTGG+GGG + Chr5:2618-2637 None:intergenic 25.0%
!!! ATATACTTGTTTTTGAACCA+AGG + Chr5:3691-3710 None:intergenic 25.0%
!!! ATCCAATCTCAATTATTTTG+AGG - Chr5:4520-4539 MsG0580024031.01.T01:CDS 25.0%
!!! GCCTATTAAACATTTTAAGA+AGG + Chr5:4165-4184 None:intergenic 25.0%
!!! TAAACATTTTAAGAAGGAGA+CGG + Chr5:4159-4178 None:intergenic 25.0%
!!! TCCAATCTCAATTATTTTGA+GGG - Chr5:4521-4540 MsG0580024031.01.T01:CDS 25.0%
!!! TTGAAATCAGCTATTTTTGT+TGG - Chr5:3711-3730 MsG0580024031.01.T01:intron 25.0%
AATATGTTGCTACACAAAGA+AGG + Chr5:2822-2841 None:intergenic 30.0%
ACCCTCAAAATAATTGAGAT+TGG + Chr5:4525-4544 None:intergenic 30.0%
AGCTACATATGTATCTGATA+GGG - Chr5:4191-4210 MsG0580024031.01.T01:CDS 30.0%
ATGATAGCTGTTATGATTCT+TGG - Chr5:2696-2715 MsG0580024031.01.T01:intron 30.0%
ATTTACTCATATGGTGTGTT+TGG - Chr5:3129-3148 MsG0580024031.01.T01:intron 30.0%
CCAACCATAGTATATTGTAA+TGG - Chr5:3648-3667 MsG0580024031.01.T01:intron 30.0%
CCATTACAATATACTATGGT+TGG + Chr5:3651-3670 None:intergenic 30.0%
CCTATTCATAAAGAACACAA+AGG + Chr5:4846-4865 None:intergenic 30.0%
CCTTTGTGTTCTTTATGAAT+AGG - Chr5:4843-4862 MsG0580024031.01.T01:CDS 30.0%
GATTGTTCTTTGTGATACAA+TGG - Chr5:3206-3225 MsG0580024031.01.T01:intron 30.0%
GGTTCATGCTAATTAAAACA+AGG - Chr5:3891-3910 MsG0580024031.01.T01:intron 30.0%
GTGACCATTACAATATACTA+TGG + Chr5:3655-3674 None:intergenic 30.0%
GTTAATCTTCATCATCTTCT+TGG + Chr5:4726-4745 None:intergenic 30.0%
TTGAGCACTACTAATTTAGA+AGG + Chr5:3375-3394 None:intergenic 30.0%
TTGTGTAGCAACATATTTCT+TGG - Chr5:2825-2844 MsG0580024031.01.T01:intron 30.0%
TTTCATCTAAACCAGTTGAT+TGG - Chr5:3318-3337 MsG0580024031.01.T01:intron 30.0%
! ATTCTGTCCCTTTTTGATAT+CGG - Chr5:3089-3108 MsG0580024031.01.T01:intron 30.0%
! GTCAACAAAGTTTCCTTTTA+TGG - Chr5:4014-4033 MsG0580024031.01.T01:intron 30.0%
! TCACTAATTTAGAGTTTCCT+TGG - Chr5:3671-3690 MsG0580024031.01.T01:intron 30.0%
! TTAGCAATGGTTGCATTTTT+CGG - Chr5:2955-2974 MsG0580024031.01.T01:intron 30.0%
!! TAGACACAACTACTTTTGAA+CGG + Chr5:4235-4254 None:intergenic 30.0%
!!! AGTAGTTTTTAGTGCTTCAA+TGG - Chr5:2791-2810 MsG0580024031.01.T01:intron 30.0%
AACAAGGTAAGGGAATAATC+TGG - Chr5:4442-4461 MsG0580024031.01.T01:CDS 35.0%
ACAAATTTGGACCAATCAAC+TGG + Chr5:3332-3351 None:intergenic 35.0%
AGATTATTCCCTTACCTTGT+TGG + Chr5:4443-4462 None:intergenic 35.0%
ATGATGCATGTAAATGTCTG+TGG - Chr5:3847-3866 MsG0580024031.01.T01:intron 35.0%
ATGATTCTTGGAATTGGACT+TGG - Chr5:2708-2727 MsG0580024031.01.T01:intron 35.0%
ATTATTCCCTTACCTTGTTG+GGG + Chr5:4441-4460 None:intergenic 35.0%
CAGCTACATATGTATCTGAT+AGG - Chr5:4190-4209 MsG0580024031.01.T01:CDS 35.0%
GATTATTCCCTTACCTTGTT+GGG + Chr5:4442-4461 None:intergenic 35.0%
GCTGTTATGATTCTTGGAAT+TGG - Chr5:2702-2721 MsG0580024031.01.T01:intron 35.0%
GGACTTGGAATGGTTTATTT+CGG - Chr5:2723-2742 MsG0580024031.01.T01:intron 35.0%
TAAAACAAGGGAATGCTAAC+CGG - Chr5:3904-3923 MsG0580024031.01.T01:intron 35.0%
TAGTAACCTTAATCAGTACC+CGG + Chr5:3935-3954 None:intergenic 35.0%
TCCTTTCGACAAAATCTGTT+GGG - Chr5:4681-4700 MsG0580024031.01.T01:intron 35.0%
TTCTTTATGAATAGGCGCAA+TGG - Chr5:4851-4870 MsG0580024031.01.T01:CDS 35.0%
! AGGAAATGTTTCTGTGTAAG+AGG - Chr5:3287-3306 MsG0580024031.01.T01:intron 35.0%
! CTTGTGTTTTCTATCTTAGG+TGG - Chr5:2874-2893 MsG0580024031.01.T01:intron 35.0%
! GTTGATTGGTCCAAATTTGT+AGG - Chr5:3332-3351 MsG0580024031.01.T01:intron 35.0%
! TCATTTTGCCAGAGACTATA+GGG - Chr5:3184-3203 MsG0580024031.01.T01:intron 35.0%
! TTCATTTTGCCAGAGACTAT+AGG - Chr5:3183-3202 MsG0580024031.01.T01:intron 35.0%
!! ATTTTAAGGGTCATGCTAAC+CGG + Chr5:4084-4103 None:intergenic 35.0%
AGAACAATCCCTATAGTCTC+TGG + Chr5:3195-3214 None:intergenic 40.0%
AGTAACCTTAATCAGTACCC+GGG + Chr5:3934-3953 None:intergenic 40.0%
CCACTAGCTGTTGGAAATTT+AGG - Chr5:2750-2769 MsG0580024031.01.T01:intron 40.0%
CCATTTATGCCTTAGTGCTT+TGG - Chr5:4632-4651 MsG0580024031.01.T01:intron 40.0%
CCTAAATTTCCAACAGCTAG+TGG + Chr5:2753-2772 None:intergenic 40.0%
CCTTTCGACAAAATCTGTTG+GGG - Chr5:4682-4701 MsG0580024031.01.T01:intron 40.0%
GCTTGAAACTAGTTGTGTAG+TGG - Chr5:3738-3757 MsG0580024031.01.T01:intron 40.0%
GTCCTTTCGACAAAATCTGT+TGG - Chr5:4680-4699 MsG0580024031.01.T01:intron 40.0%
GTGAGACAAGCTATTGTGTT+TGG - Chr5:3060-3079 MsG0580024031.01.T01:intron 40.0%
TAAATGTCTGTGGTAGCTGT+GGG - Chr5:3857-3876 MsG0580024031.01.T01:intron 40.0%
TAATGCTCTACCCAATCGAA+TGG - Chr5:4471-4490 MsG0580024031.01.T01:CDS 40.0%
TACAATCCCCAACAAGGTAA+GGG - Chr5:4432-4451 MsG0580024031.01.T01:CDS 40.0%
TAGTGGCGCTTAGTGATAAT+TGG - Chr5:3755-3774 MsG0580024031.01.T01:intron 40.0%
TCTTGGAATTGGACTTGGAA+TGG - Chr5:2713-2732 MsG0580024031.01.T01:intron 40.0%
TGGAGGCGAATTGAATCTAA+AGG + Chr5:4797-4816 None:intergenic 40.0%
! CAACTAAGACCAAAGCACTA+AGG + Chr5:4644-4663 None:intergenic 40.0%
! CAGATTTTGTCGAAAGGACA+AGG + Chr5:4679-4698 None:intergenic 40.0%
! CCAAAGCACTAAGGCATAAA+TGG + Chr5:4635-4654 None:intergenic 40.0%
! CTACACAACTAGTTTCAAGC+TGG + Chr5:3738-3757 None:intergenic 40.0%
! GTGTGTCCAGTTGATATAGT+TGG + Chr5:4820-4839 None:intergenic 40.0%
! TGTCCAGTTGATATAGTTGG+TGG + Chr5:4817-4836 None:intergenic 40.0%
!! ATGGTTTGCTTCCATTCGAT+TGG + Chr5:4485-4504 None:intergenic 40.0%
!! CTTTGGTCTTAGTTGAGTGT+AGG - Chr5:4649-4668 MsG0580024031.01.T01:intron 40.0%
!! TGCTAAAGTGGCTTTAGCAA+TGG - Chr5:2942-2961 MsG0580024031.01.T01:intron 40.0%
!! TGGTTTGCTTCCATTCGATT+GGG + Chr5:4484-4503 None:intergenic 40.0%
!! TTTTCTTTTGGGGGCAGTTT+TGG + Chr5:2609-2628 None:intergenic 40.0%
!!! TTGTGTGATGTGTGCTGTTT+TGG - Chr5:2903-2922 MsG0580024031.01.T01:intron 40.0%
CCTCCACCAACTATATCAAC+TGG - Chr5:4811-4830 MsG0580024031.01.T01:CDS 45.0%
CTACAATCCCCAACAAGGTA+AGG - Chr5:4431-4450 MsG0580024031.01.T01:CDS 45.0%
GTAAATGTCTGTGGTAGCTG+TGG - Chr5:3856-3875 MsG0580024031.01.T01:intron 45.0%
GTAACCTTAATCAGTACCCG+GGG + Chr5:3933-3952 None:intergenic 45.0%
GTTGTGTTCCTCACACATGT+CGG + Chr5:3030-3049 None:intergenic 45.0%
TAACCTTAATCAGTACCCGG+GGG + Chr5:3932-3951 None:intergenic 45.0%
TAGCTGTGGGAATAGGAAAG+TGG - Chr5:3870-3889 MsG0580024031.01.T01:intron 45.0%
TAGGTCTACAATCCCCAACA+AGG - Chr5:4426-4445 MsG0580024031.01.T01:CDS 45.0%
TGTATTGTTAACCAGTGCCC+CGG - Chr5:4054-4073 MsG0580024031.01.T01:intron 45.0%
! AGTTGTTTCCGACATGTGTG+AGG - Chr5:3019-3038 MsG0580024031.01.T01:intron 45.0%
! CCCCAACAGATTTTGTCGAA+AGG + Chr5:4685-4704 None:intergenic 45.0%
! CTGTCCCTTTTTGATATCGG+CGG - Chr5:3092-3111 MsG0580024031.01.T01:intron 45.0%
! TAGAGTACCAGCTGCTAAAG+TGG - Chr5:2930-2949 MsG0580024031.01.T01:intron 45.0%
! TGTCCCTTTTTGATATCGGC+GGG - Chr5:3093-3112 MsG0580024031.01.T01:intron 45.0%
!! CCAGTTGATATAGTTGGTGG+AGG + Chr5:4814-4833 None:intergenic 45.0%
!! TGCATTTTTCGGCGCTTGTA+CGG - Chr5:2966-2985 MsG0580024031.01.T01:intron 45.0%
CTCCCCGCCGATATCAAAAA+GGG + Chr5:3099-3118 None:intergenic 50.0%
GAGGAACACAACAACGTCGT+TGG - Chr5:3038-3057 MsG0580024031.01.T01:intron 50.0%
GTATTGTTAACCAGTGCCCC+GGG - Chr5:4055-4074 MsG0580024031.01.T01:intron 50.0%
TATTGTTAACCAGTGCCCCG+GGG - Chr5:4056-4075 MsG0580024031.01.T01:intron 50.0%
TCTGTGGTAGCTGTGGGAAT+AGG - Chr5:3863-3882 MsG0580024031.01.T01:intron 50.0%
TTCGGTATGCCACTAGCTGT+TGG - Chr5:2741-2760 MsG0580024031.01.T01:intron 50.0%
! GCTAAAGCCACTTTAGCAGC+TGG + Chr5:2940-2959 None:intergenic 50.0%
! GTCCCTTTTTGATATCGGCG+GGG - Chr5:3094-3113 MsG0580024031.01.T01:intron 50.0%
CCTCCCCGCCGATATCAAAA+AGG + Chr5:3100-3119 None:intergenic 55.0%
! CCTTTTTGATATCGGCGGGG+AGG - Chr5:3097-3116 MsG0580024031.01.T01:intron 55.0%
! TAATCAGTACCCGGGGGCAC+CGG + Chr5:3926-3945 None:intergenic 60.0%
!! GTGCCCCCGGGTACTGATTA+AGG - Chr5:3926-3945 MsG0580024031.01.T01:intron 60.0%
GAATGCTAACCGGTGCCCCC+GGG - Chr5:3914-3933 MsG0580024031.01.T01:intron 65.0%
GGAATGCTAACCGGTGCCCC+CGG - Chr5:3913-3932 MsG0580024031.01.T01:intron 65.0%
GGTCATGCTAACCGGTGCCC+CGG + Chr5:4076-4095 None:intergenic 65.0%
GTCATGCTAACCGGTGCCCC+GGG + Chr5:4075-4094 None:intergenic 65.0%
TCATGCTAACCGGTGCCCCG+GGG + Chr5:4074-4093 None:intergenic 65.0%
TAACCAGTGCCCCGGGGCAC+CGG - Chr5:4062-4081 MsG0580024031.01.T01:intron 70.0%
TAACCGGTGCCCCGGGGCAC+TGG + Chr5:4068-4087 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr5 gene 2540 4913 2540 ID=MsG0580024031.01;Name=MsG0580024031.01
Chr5 mRNA 2540 4913 2540 ID=MsG0580024031.01.T01;Parent=MsG0580024031.01;Name=MsG0580024031.01.T01;_AED=0.26;_eAED=0.26;_QI=0|0|0|0.66|1|1|3|0|220
Chr5 exon 4709 4913 4709 ID=MsG0580024031.01.T01:exon:22927;Parent=MsG0580024031.01.T01
Chr5 exon 4152 4560 4152 ID=MsG0580024031.01.T01:exon:22926;Parent=MsG0580024031.01.T01
Chr5 exon 2540 2588 2540 ID=MsG0580024031.01.T01:exon:22925;Parent=MsG0580024031.01.T01
Chr5 CDS 4709 4913 4709 ID=MsG0580024031.01.T01:cds;Parent=MsG0580024031.01.T01
Chr5 CDS 4152 4560 4152 ID=MsG0580024031.01.T01:cds;Parent=MsG0580024031.01.T01
Chr5 CDS 2540 2588 2540 ID=MsG0580024031.01.T01:cds;Parent=MsG0580024031.01.T01
Gene Sequence

>MsG0580024031.01.T01

ATGCTCAAACGAGTTTCTTCTGAAGAAAGTGCTGATGATGATAGCGTTAATTTAGCTTCGAATTTACCAAAACTGCCCCCAAAAGAAAAAGTTTCATTTTTTCAACTTTACTCATCAATAGGAGAATTGTTTCATAAAAGATGGGCTGTTATAAGAATGATAGCTGTTATGATTCTTGGAATTGGACTTGGAATGGTTTATTTCGGTGGAATTTGTTGTGTGATGTGTGCTGTTTTGGAGAATAGAGTACCAGCTGCTAAAGTGGCTTTAGCAATGGTTGCATTTTTCGGCGCTTGTACGGCTTATAATGTGTTTCTCATATACATTATAGAGTTGTTTCCGACATGTGTGAGGAACACAACAACGTCGTTGGTGAGACAAGCTATTGTGTTTGGTTGCATATTCTGTCCCTTTTTGATATCGGCGGGGAGGAAAAACAATATTTACTCATATGGTGTGTTTGGAGTTGTTATAATGTTGTCCAATTTTACATTGTTCATTTTGCCAGAGACTATAGGGATTGTTCTTTGTGATACAATGGATCAACAAGAGAAGAAAGAAATAGCTATGTCTGATGCCATGAATCAACATGAAAAAATAGGAAATGTTTCTGTGCGCAATGGTTACATTGTTTCAATAGCTAAGCTTTACATCTTTCAATGA
Protein sequence

>MsG0580024031.01.T01

MLKRVSSEESADDDSVNLASNLPKLPPKEKVSFFQLYSSIGELFHKRWAVIRMIAVMILGIGLGMVYFGGICCVMCAVLENRVPAAKVALAMVAFFGACTAYNVFLIYIIELFPTCVRNTTTSLVRQAIVFGCIFCPFLISAGRKNNIYSYGVFGVVIMLSNFTLFILPETIGIVLCDTMDQQEKKEIAMSDAMNQHEKIGNVSVRNGYIVSIAKLYIFQ*