AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029673.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029673.01.T01 MTR_5g090780 96.392 388 14 0 1 388 1 388 0.0 780
MsG0580029673.01.T01 MTR_3g450510 80.402 398 65 4 1 388 1 395 0.0 652
MsG0580029673.01.T01 MTR_5g076620 75.740 338 78 2 45 381 95 429 0.0 536
MsG0580029673.01.T01 MTR_5g076620 75.779 289 66 2 44 331 94 379 3.02e-161 458
MsG0580029673.01.T01 MTR_3g083630 64.134 329 108 2 53 380 57 376 8.83e-156 444
MsG0580029673.01.T01 MTR_3g083650 61.972 71 27 0 117 187 1 71 3.51e-25 97.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029673.01.T01 AT5G17230 76.602 359 71 5 28 377 59 413 0.0 555
MsG0580029673.01.T01 AT5G17230 76.602 359 71 5 28 377 59 413 0.0 555
MsG0580029673.01.T01 AT5G17230 76.602 359 71 5 28 377 59 413 0.0 555
MsG0580029673.01.T01 AT5G17230 73.529 374 71 6 28 377 59 428 0.0 546

Find 81 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATAATAACTTCACAAAA+AGG 0.232010 5:-100602280 MsG0580029673.01.T01:CDS
GCATCATCTCATAAACAATT+TGG 0.245018 5:+100602178 None:intergenic
CTTTATTGTTACTATGTTGC+TGG 0.254005 5:-100603385 MsG0580029673.01.T01:CDS
TCATGAAGGGACAAATAAAA+AGG 0.256763 5:-100602424 MsG0580029673.01.T01:CDS
TCTGTAGAAGCCTTGGATTC+AGG 0.303642 5:+100603322 None:intergenic
TAAGTACCCTGTTGATATTC+AGG 0.310562 5:-100604055 MsG0580029673.01.T01:intron
AGATGTCTAGTATTGTTGTT+AGG 0.314970 5:-100606164 MsG0580029673.01.T01:CDS
AAGAACGCCGAAAAGCTATA+TGG 0.335633 5:-100604375 MsG0580029673.01.T01:CDS
TGTGAAGTTATTATAATCAT+TGG 0.341584 5:+100602286 None:intergenic
TTATCACTACCAGCTGCTTA+TGG 0.342219 5:-100602230 MsG0580029673.01.T01:CDS
TCAGGTGCTATTCCCATTAC+AGG 0.342367 5:+100603340 None:intergenic
TCCAACATCTCTGAGTATAT+TGG 0.357053 5:+100603252 None:intergenic
AGAGTGTAAGAATGTGTTCT+AGG 0.362858 5:-100606086 MsG0580029673.01.T01:CDS
GTTCTTTGATGAAGCAGAAA+AGG 0.373517 5:-100602393 MsG0580029673.01.T01:CDS
TTGGTGGGTATTTCTAGAAT+TGG 0.377918 5:-100606120 MsG0580029673.01.T01:CDS
CTCTCCTCTGAACTTCTTGA+AGG 0.380334 5:+100606027 None:intergenic
AAAGCTATATGGGCAATCTA+TGG 0.391917 5:-100604364 MsG0580029673.01.T01:intron
GTGTGATGTGTGAAGCATTT+GGG 0.394039 5:+100604172 None:intergenic
CCATTCAAGGACATGATAGA+AGG 0.398564 5:-100603460 MsG0580029673.01.T01:CDS
GGGCAGCATTGTTGTTATAT+AGG 0.404583 5:-100602331 MsG0580029673.01.T01:CDS
TGAAGTACCTGAATATCAAC+AGG 0.410981 5:+100604048 None:intergenic
GGTGTGATGTGTGAAGCATT+TGG 0.411963 5:+100604171 None:intergenic
TCCCATCTGTCCAAGGCTGC+TGG 0.419670 5:+100604150 None:intergenic
CTTATGAGTGTTCCTGTAAT+GGG 0.421342 5:-100603352 MsG0580029673.01.T01:CDS
GCATAATGTCTTCATCTGAT+AGG 0.425370 5:+100602477 None:intergenic
TAAGAATGTGTTCTAGGATA+AGG 0.432765 5:-100606080 MsG0580029673.01.T01:CDS
TTTGGTGAGAGAAGAGAGGA+GGG 0.434884 5:-100605974 MsG0580029673.01.T01:CDS
TTTATTGTTACTATGTTGCT+GGG 0.438390 5:-100603384 MsG0580029673.01.T01:CDS
AGCTCAGTTCTGCTAGTAGA+TGG 0.444906 5:-100602361 MsG0580029673.01.T01:CDS
GATGTCTAGTATTGTTGTTA+GGG 0.445851 5:-100606163 MsG0580029673.01.T01:CDS
TCTTATGAGTGTTCCTGTAA+TGG 0.447627 5:-100603353 MsG0580029673.01.T01:CDS
CAGCAACATAGTAACAATAA+AGG 0.448850 5:+100603386 None:intergenic
GCAGCATCAAACATATCATA+TGG 0.464921 5:+100604096 None:intergenic
TTATTTGAAATAGCCATTCA+AGG 0.465866 5:-100603473 MsG0580029673.01.T01:intron
CCTTCTATCATGTCCTTGAA+TGG 0.471429 5:+100603460 None:intergenic
CACCAGCAGCCTTGGACAGA+TGG 0.481447 5:-100604152 MsG0580029673.01.T01:CDS
AATGCTCTCTGTAGAAGCCT+TGG 0.487506 5:+100603315 None:intergenic
TAGGATAAGGATTGGAAGTG+GGG 0.491274 5:-100606067 MsG0580029673.01.T01:CDS
TTCTTTGATGAAGCAGAAAA+GGG 0.493216 5:-100602392 MsG0580029673.01.T01:CDS
TGCTAGTAGATGGCCTGTGT+GGG 0.498713 5:-100602351 MsG0580029673.01.T01:CDS
CTAGGATAAGGATTGGAAGT+GGG 0.499846 5:-100606068 MsG0580029673.01.T01:CDS
AGAACGCCGAAAAGCTATAT+GGG 0.501743 5:-100604374 MsG0580029673.01.T01:CDS
ACACATCACACCAGCAGCCT+TGG 0.504549 5:-100604160 MsG0580029673.01.T01:CDS
AGAACTGATGAACTAGTAGA+TGG 0.508686 5:-100604195 MsG0580029673.01.T01:CDS
GAGCATTTATAATGCTGCAT+TGG 0.509388 5:-100603299 MsG0580029673.01.T01:CDS
CATGATAGAAGGGATGAGGA+TGG 0.512203 5:-100603449 MsG0580029673.01.T01:CDS
TTCAAGAAGTTCAGAGGAGA+GGG 0.515940 5:-100606025 MsG0580029673.01.T01:CDS
TATAATGCTGCATTGGCACT+AGG 0.516591 5:-100603292 MsG0580029673.01.T01:CDS
TATTGAATTCTGCTTATGAT+CGG 0.518807 5:-100605891 MsG0580029673.01.T01:CDS
TACTATGTTGCTGGGACAGT+AGG 0.527506 5:-100603376 MsG0580029673.01.T01:CDS
ACCAATATACTCAGAGATGT+TGG 0.528223 5:-100603253 MsG0580029673.01.T01:CDS
CTTGTGCTAGCTCATCTTGA+GGG 0.529549 5:+100602504 None:intergenic
ACCAGCAGCCTTGGACAGAT+GGG 0.533995 5:-100604151 MsG0580029673.01.T01:CDS
ATGTGTTCTAGGATAAGGAT+TGG 0.544713 5:-100606075 MsG0580029673.01.T01:CDS
GTGGAAAAGTAACAGACAAA+TGG 0.545459 5:-100602454 MsG0580029673.01.T01:CDS
CAAGATGAGCTAGCACAAGC+TGG 0.546911 5:-100602500 MsG0580029673.01.T01:CDS
GTTTGGTGAGAGAAGAGAGG+AGG 0.548572 5:-100605975 MsG0580029673.01.T01:CDS
CATTCAAGGACATGATAGAA+GGG 0.552755 5:-100603459 MsG0580029673.01.T01:CDS
CTGCTAGTAGATGGCCTGTG+TGG 0.559580 5:-100602352 MsG0580029673.01.T01:CDS
GGGAATAGCACCTGAATCCA+AGG 0.561665 5:-100603332 MsG0580029673.01.T01:CDS
GAATTGTGATGCAAAATCAT+TGG 0.562271 5:-100606139 MsG0580029673.01.T01:CDS
CAAATGGAGAAATTTCATGA+AGG 0.564295 5:-100602438 MsG0580029673.01.T01:CDS
AGGACATGATAGAAGGGATG+AGG 0.567252 5:-100603453 MsG0580029673.01.T01:CDS
CCGTTGCTCCCATCTGTCCA+AGG 0.572170 5:+100604143 None:intergenic
GCTTGTGCTAGCTCATCTTG+AGG 0.572873 5:+100602503 None:intergenic
GATTATGATAGTGCTAGAAG+AGG 0.580690 5:-100602539 MsG0580029673.01.T01:intron
AAATGGAGAAATTTCATGAA+GGG 0.583483 5:-100602437 MsG0580029673.01.T01:CDS
AGTGCAGTTCCATAAGCAGC+TGG 0.587800 5:+100602221 None:intergenic
TCTAGGATAAGGATTGGAAG+TGG 0.601725 5:-100606069 MsG0580029673.01.T01:CDS
CTTCAAGAAGTTCAGAGGAG+AGG 0.613107 5:-100606026 MsG0580029673.01.T01:CDS
AGAACCTTCAAGAAGTTCAG+AGG 0.614687 5:-100606031 MsG0580029673.01.T01:CDS
TTGTGATGCAAAATCATTGG+TGG 0.618059 5:-100606136 MsG0580029673.01.T01:CDS
CCTTGGACAGATGGGAGCAA+CGG 0.633759 5:-100604143 MsG0580029673.01.T01:CDS
AACAACAATGCTGCCCACAC+AGG 0.638058 5:+100602338 None:intergenic
CAGGTTTGGTGAGAGAAGAG+AGG 0.641181 5:-100605978 MsG0580029673.01.T01:CDS
TGTGATGCAAAATCATTGGT+GGG 0.648026 5:-100606135 MsG0580029673.01.T01:CDS
TCAGATGAAGACATTATGCG+TGG 0.650440 5:-100602473 MsG0580029673.01.T01:CDS
TTGGTGAGAGAAGAGAGGAG+GGG 0.656692 5:-100605973 MsG0580029673.01.T01:CDS
AGGATAAGGATTGGAAGTGG+GGG 0.690063 5:-100606066 MsG0580029673.01.T01:CDS
AATTCTGCTTATGATCGGTG+TGG 0.729934 5:-100605886 MsG0580029673.01.T01:CDS
GAAGTACCTGAATATCAACA+GGG 0.777322 5:+100604049 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAACGTATAAATAAA+GGG + Chr5:100603837-100603856 None:intergenic 10.0%
!! ATAACAATAGTTAAATAAAA+AGG - Chr5:100605495-100605514 MsG0580029673.01.T01:intron 10.0%
!! TAAAAAAAACGTATAAATAA+AGG + Chr5:100603838-100603857 None:intergenic 10.0%
!!! ATTTCTCTTTTTATTTAATA+CGG - Chr5:100605317-100605336 MsG0580029673.01.T01:intron 10.0%
!!! GAATGTTATTTTTATTTTTT+TGG + Chr5:100604056-100604075 None:intergenic 10.0%
!! AAAAAAACGTATAAATAAAG+GGG + Chr5:100603836-100603855 None:intergenic 15.0%
!! ATTATAATAACTTCACAAAA+AGG - Chr5:100606063-100606082 MsG0580029673.01.T01:CDS 15.0%
!! ATTTAGTGTTATATTGTATT+GGG + Chr5:100603773-100603792 None:intergenic 15.0%
!! GATTAAATTCAATTGAATAT+TGG + Chr5:100602577-100602596 None:intergenic 15.0%
!! GTAAAATAATTGAGAAAAAT+AGG + Chr5:100602780-100602799 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + Chr5:100603774-100603793 None:intergenic 15.0%
!! TTATAATAACTTCACAAAAA+GGG - Chr5:100606064-100606083 MsG0580029673.01.T01:CDS 15.0%
!!! AAATATTTTGTTGTGTTTAA+TGG + Chr5:100603470-100603489 None:intergenic 15.0%
!!! AAGTGAATTTTTTTAGTTTT+TGG + Chr5:100604507-100604526 None:intergenic 15.0%
!!! AATTGAATTTAATCCATTTT+TGG - Chr5:100602583-100602602 MsG0580029673.01.T01:intron 15.0%
!!! TTATTTTACACTTAAATGAA+TGG - Chr5:100602791-100602810 MsG0580029673.01.T01:intron 15.0%
!!! TTGAAATAGTATATAGTTTT+TGG + Chr5:100605159-100605178 None:intergenic 15.0%
!!! TTTCTCTTTTTATTTAATAC+GGG - Chr5:100605318-100605337 MsG0580029673.01.T01:intron 15.0%
!! AAAATTGATCTTATTGACAT+TGG - Chr5:100604842-100604861 MsG0580029673.01.T01:intron 20.0%
!! AAAGTGGAATATATTGTATT+GGG + Chr5:100603813-100603832 None:intergenic 20.0%
!! AATTCCAAACCAAAAAAAAA+AGG + Chr5:100604094-100604113 None:intergenic 20.0%
!! ATCTTTCAATTGTACAATTT+AGG - Chr5:100603928-100603947 MsG0580029673.01.T01:intron 20.0%
!! TAAAAAAAAACAATTGTGTG+TGG + Chr5:100604593-100604612 None:intergenic 20.0%
!! TAGAAAATAAAACTTCTATC+TGG + Chr5:100603415-100603434 None:intergenic 20.0%
!! TATATGAAACATGTAATGTA+AGG + Chr5:100604349-100604368 None:intergenic 20.0%
!! TGAAATTAAATTCCTTTCTT+GGG - Chr5:100605373-100605392 MsG0580029673.01.T01:intron 20.0%
!! TGTGAAGTTATTATAATCAT+TGG + Chr5:100606060-100606079 None:intergenic 20.0%
!! TTGAAATTAAATTCCTTTCT+TGG - Chr5:100605372-100605391 MsG0580029673.01.T01:intron 20.0%
!!! AACAATTTGGTTAACTTTTT+AGG + Chr5:100606155-100606174 None:intergenic 20.0%
!!! AAGGTTGAGATTTAAATTTT+AGG + Chr5:100604330-100604349 None:intergenic 20.0%
!!! ACACACAATTGTTTTTTTTT+AGG - Chr5:100604592-100604611 MsG0580029673.01.T01:intron 20.0%
!!! ATAATGTATTGACAAATTCA+TGG + Chr5:100605600-100605619 None:intergenic 20.0%
!!! CTATTAAGTCCTTTTTTTTT+TGG - Chr5:100604082-100604101 MsG0580029673.01.T01:CDS 20.0%
!!! GAAAAAAGAAACATTTTCAA+TGG + Chr5:100603286-100603305 None:intergenic 20.0%
!!! GAAGTTATTTCAATTAAGTT+AGG - Chr5:100603564-100603583 MsG0580029673.01.T01:intron 20.0%
!!! GGACATTTTTTTTAGAAAAT+GGG + Chr5:100603705-100603724 None:intergenic 20.0%
!!! GTATTTTGGAGTATATTTTT+TGG - Chr5:100603617-100603636 MsG0580029673.01.T01:intron 20.0%
!!! TATATTTTTTGGATGGATTT+GGG - Chr5:100603628-100603647 MsG0580029673.01.T01:intron 20.0%
!!! TGAAAATGTTTCTTTTTTCA+TGG - Chr5:100603287-100603306 MsG0580029673.01.T01:CDS 20.0%
!!! TGAATTTTTTTAGTTTTTGG+TGG + Chr5:100604504-100604523 None:intergenic 20.0%
!!! TTGATGATGATATCATAATT+TGG + Chr5:100604033-100604052 None:intergenic 20.0%
! AAATGGAGAAATTTCATGAA+GGG - Chr5:100605906-100605925 MsG0580029673.01.T01:CDS 25.0%
! ACAATTAAGTGTGTGAATTT+CGG + Chr5:100604656-100604675 None:intergenic 25.0%
! AGAAAGAAAGAAAAATACCT+AGG + Chr5:100602516-100602535 None:intergenic 25.0%
! ATAATGCATTAGATAACAGA+GGG - Chr5:100603339-100603358 MsG0580029673.01.T01:CDS 25.0%
! ATGAACCTAATTAAAGTCAT+TGG + Chr5:100605630-100605649 None:intergenic 25.0%
! ATTGGAAATTCTGAATATTG+TGG + Chr5:100602559-100602578 None:intergenic 25.0%
! CTTAATACCTTCTAACTAAA+GGG - Chr5:100605434-100605453 MsG0580029673.01.T01:intron 25.0%
! GAAAGTGGAATATATTGTAT+TGG + Chr5:100603814-100603833 None:intergenic 25.0%
! GAAATTAAATTCCTTTCTTG+GGG - Chr5:100605374-100605393 MsG0580029673.01.T01:intron 25.0%
! TATAATGCATTAGATAACAG+AGG - Chr5:100603338-100603357 MsG0580029673.01.T01:CDS 25.0%
! TATTGAATTCTGCTTATGAT+CGG - Chr5:100602452-100602471 MsG0580029673.01.T01:CDS 25.0%
! TCTTAATACCTTCTAACTAA+AGG - Chr5:100605433-100605452 MsG0580029673.01.T01:intron 25.0%
! TGAACCTAATTAAAGTCATT+GGG + Chr5:100605629-100605648 None:intergenic 25.0%
! TTTATTGTTACTATGTTGCT+GGG - Chr5:100604959-100604978 MsG0580029673.01.T01:intron 25.0%
!! TTATTTGAAATAGCCATTCA+AGG - Chr5:100604870-100604889 MsG0580029673.01.T01:intron 25.0%
!! TTGAAATGACTCAGTTATTT+TGG + Chr5:100603727-100603746 None:intergenic 25.0%
!! TTTTCCCAATGACTTTAATT+AGG - Chr5:100605622-100605641 MsG0580029673.01.T01:intron 25.0%
!!! AAGTCCTTTTTTTTTTGGTT+TGG - Chr5:100604087-100604106 MsG0580029673.01.T01:CDS 25.0%
!!! ATGGAGGAAATTTTAAGTAT+TGG + Chr5:100603451-100603470 None:intergenic 25.0%
!!! ATTTTTTTAGTTTTTGGTGG+TGG + Chr5:100604501-100604520 None:intergenic 25.0%
!!! CATTTTTGGTAAGTTTCATT+GGG - Chr5:100602597-100602616 MsG0580029673.01.T01:intron 25.0%
!!! GATTTTGAGAAAACAATTGA+AGG - Chr5:100602409-100602428 MsG0580029673.01.T01:CDS 25.0%
!!! GGGACATTTTTTTTAGAAAA+TGG + Chr5:100603706-100603725 None:intergenic 25.0%
!!! GTATATTTTTTGGATGGATT+TGG - Chr5:100603627-100603646 MsG0580029673.01.T01:intron 25.0%
!!! TATTTTGTTGTGTTTAATGG+AGG + Chr5:100603467-100603486 None:intergenic 25.0%
!!! TGAAATGACTCAGTTATTTT+GGG + Chr5:100603726-100603745 None:intergenic 25.0%
!!! TTTGGAGTATATTTTTTGGA+TGG - Chr5:100603621-100603640 MsG0580029673.01.T01:intron 25.0%
AATACCTAGGTAAAAAGTCT+TGG + Chr5:100602503-100602522 None:intergenic 30.0%
AATGAGTCAATGGAAGTTAA+AGG - Chr5:100602860-100602879 MsG0580029673.01.T01:intron 30.0%
ACTAAACATACACTTAGTTG+TGG + Chr5:100604400-100604419 None:intergenic 30.0%
ACTGAGTCTATGAAAGTTAT+TGG - Chr5:100602834-100602853 MsG0580029673.01.T01:intron 30.0%
ATTAATTTCACCCACGAAAA+AGG - Chr5:100604561-100604580 MsG0580029673.01.T01:intron 30.0%
CAAATGGAGAAATTTCATGA+AGG - Chr5:100605905-100605924 MsG0580029673.01.T01:CDS 30.0%
CAATATCGATAATGTTAGGT+TGG + Chr5:100604711-100604730 None:intergenic 30.0%
CAGACAATATCGATAATGTT+AGG + Chr5:100604715-100604734 None:intergenic 30.0%
CAGCAACATAGTAACAATAA+AGG + Chr5:100604960-100604979 None:intergenic 30.0%
CATGAAGGGACAAATAAAAA+GGG - Chr5:100605920-100605939 MsG0580029673.01.T01:CDS 30.0%
CCAATGAAACTTACCAAAAA+TGG + Chr5:100602599-100602618 None:intergenic 30.0%
CTGAGTCTATGAAAGTTATT+GGG - Chr5:100602835-100602854 MsG0580029673.01.T01:intron 30.0%
CTTTATTGTTACTATGTTGC+TGG - Chr5:100604958-100604977 MsG0580029673.01.T01:intron 30.0%
GAATTGTGATGCAAAATCAT+TGG - Chr5:100602204-100602223 MsG0580029673.01.T01:CDS 30.0%
GACAATGCATGATATATGAA+AGG - Chr5:100604456-100604475 MsG0580029673.01.T01:intron 30.0%
TAAGAAACCAACATGATGTT+CGG + Chr5:100605418-100605437 None:intergenic 30.0%
TATGAGACTAATCTTTGAGT+CGG - Chr5:100605281-100605300 MsG0580029673.01.T01:intron 30.0%
TCATGAAGGGACAAATAAAA+AGG - Chr5:100605919-100605938 MsG0580029673.01.T01:CDS 30.0%
TCTTCATTCTTGAATATGTG+TGG + Chr5:100602636-100602655 None:intergenic 30.0%
TTCTTTGATGAAGCAGAAAA+GGG - Chr5:100605951-100605970 MsG0580029673.01.T01:CDS 30.0%
! TGGTTAGATCGTTAGTATTT+TGG - Chr5:100603603-100603622 MsG0580029673.01.T01:intron 30.0%
! TTTGTTATATGTAGACGAAG+TGG - Chr5:100604621-100604640 MsG0580029673.01.T01:intron 30.0%
!! AACGTCAAAGTTGATTTTAG+AGG - Chr5:100604532-100604551 MsG0580029673.01.T01:intron 30.0%
!! ATTGAAGGTGATTTTAGCAA+TGG - Chr5:100602424-100602443 MsG0580029673.01.T01:CDS 30.0%
!! TAAGAATGTGTTCTAGGATA+AGG - Chr5:100602263-100602282 MsG0580029673.01.T01:CDS 30.0%
!! TCAAAGATTAGTCTCATAGT+GGG + Chr5:100605279-100605298 None:intergenic 30.0%
!!! CCATTTTTGGTAAGTTTCAT+TGG - Chr5:100602596-100602615 MsG0580029673.01.T01:intron 30.0%
AAAGCTATATGGGCAATCTA+TGG - Chr5:100603979-100603998 MsG0580029673.01.T01:intron 35.0%
AAGAAACCAACATGATGTTC+GGG + Chr5:100605417-100605436 None:intergenic 35.0%
AAGTTAGGCAAGCAATTAAG+TGG - Chr5:100603579-100603598 MsG0580029673.01.T01:intron 35.0%
ACCAATATACTCAGAGATGT+TGG - Chr5:100605090-100605109 MsG0580029673.01.T01:intron 35.0%
AGAAAATGGGTCAGATATTC+CGG + Chr5:100603692-100603711 None:intergenic 35.0%
AGAACTGATGAACTAGTAGA+TGG - Chr5:100604148-100604167 MsG0580029673.01.T01:CDS 35.0%
AGAGTGTAAGAATGTGTTCT+AGG - Chr5:100602257-100602276 MsG0580029673.01.T01:CDS 35.0%
ATTAAGTGTGTGAATTTCGG+CGG + Chr5:100604653-100604672 None:intergenic 35.0%
CACACTTAATTGTGAGATTC+CGG - Chr5:100604663-100604682 MsG0580029673.01.T01:intron 35.0%
CATGATATATGAAAGGTCTG+AGG - Chr5:100604463-100604482 MsG0580029673.01.T01:intron 35.0%
CATTCAAGGACATGATAGAA+GGG - Chr5:100604884-100604903 MsG0580029673.01.T01:intron 35.0%
CGTATAAATAAAGGGGAAAG+TGG + Chr5:100603829-100603848 None:intergenic 35.0%
CTTATGAGTGTTCCTGTAAT+GGG - Chr5:100604991-100605010 MsG0580029673.01.T01:intron 35.0%
GAGCATTTATAATGCTGCAT+TGG - Chr5:100605044-100605063 MsG0580029673.01.T01:intron 35.0%
GCAGCATCAAACATATCATA+TGG + Chr5:100604250-100604269 None:intergenic 35.0%
GCATAATGTCTTCATCTGAT+AGG + Chr5:100605869-100605888 None:intergenic 35.0%
GGACTGATTATGATTAAGAG+AGG - Chr5:100603308-100603327 MsG0580029673.01.T01:CDS 35.0%
GTGGAAAAGTAACAGACAAA+TGG - Chr5:100605889-100605908 MsG0580029673.01.T01:CDS 35.0%
GTTCTTTGATGAAGCAGAAA+AGG - Chr5:100605950-100605969 MsG0580029673.01.T01:CDS 35.0%
TAAGTACCCTGTTGATATTC+AGG - Chr5:100604288-100604307 MsG0580029673.01.T01:intron 35.0%
TCCAACATCTCTGAGTATAT+TGG + Chr5:100605094-100605113 None:intergenic 35.0%
TCGATATTGTCTGTTGAGTT+AGG - Chr5:100604722-100604741 MsG0580029673.01.T01:intron 35.0%
TCTTATGAGTGTTCCTGTAA+TGG - Chr5:100604990-100605009 MsG0580029673.01.T01:intron 35.0%
TGTGATGCAAAATCATTGGT+GGG - Chr5:100602208-100602227 MsG0580029673.01.T01:CDS 35.0%
TTATTGGGAGAATGAGTCAA+TGG - Chr5:100602850-100602869 MsG0580029673.01.T01:intron 35.0%
TTCACAAAAAGGGCTTATGT+TGG - Chr5:100606074-100606093 MsG0580029673.01.T01:CDS 35.0%
TTGTGATGCAAAATCATTGG+TGG - Chr5:100602207-100602226 MsG0580029673.01.T01:CDS 35.0%
TTTCATTGTGCATTGCAGTA+TGG - Chr5:100604119-100604138 MsG0580029673.01.T01:CDS 35.0%
! AGATTGCCCATATAGCTTTT+CGG + Chr5:100603978-100603997 None:intergenic 35.0%
! GAAGTACCTGAATATCAACA+GGG + Chr5:100604297-100604316 None:intergenic 35.0%
! GATTATGATAGTGCTAGAAG+AGG - Chr5:100605804-100605823 MsG0580029673.01.T01:intron 35.0%
! TAGCTCTTTAAGAACCACAA+CGG - Chr5:100603164-100603183 MsG0580029673.01.T01:intron 35.0%
! TATGCCAAGACTTTTTACCT+AGG - Chr5:100602496-100602515 MsG0580029673.01.T01:CDS 35.0%
! TGAAGTACCTGAATATCAAC+AGG + Chr5:100604298-100604317 None:intergenic 35.0%
!! ATGTGTTCTAGGATAAGGAT+TGG - Chr5:100602268-100602287 MsG0580029673.01.T01:CDS 35.0%
!! CTCAAAGATTAGTCTCATAG+TGG + Chr5:100605280-100605299 None:intergenic 35.0%
!! GAGTTGATAGAAAACGATGA+TGG + Chr5:100603387-100603406 None:intergenic 35.0%
!! TTGGTGGGTATTTCTAGAAT+TGG - Chr5:100602223-100602242 MsG0580029673.01.T01:CDS 35.0%
AAGAACGCCGAAAAGCTATA+TGG - Chr5:100603968-100603987 MsG0580029673.01.T01:intron 40.0%
AATCTGTGTGAAATGAGCCA+AGG - Chr5:100603857-100603876 MsG0580029673.01.T01:intron 40.0%
AATTCTGCTTATGATCGGTG+TGG - Chr5:100602457-100602476 MsG0580029673.01.T01:CDS 40.0%
ACACTAAAACCTCACCATTG+GGG + Chr5:100603261-100603280 None:intergenic 40.0%
AGAAACCAACATGATGTTCG+GGG + Chr5:100605416-100605435 None:intergenic 40.0%
AGAACCTTCAAGAAGTTCAG+AGG - Chr5:100602312-100602331 MsG0580029673.01.T01:CDS 40.0%
AGAACGCCGAAAAGCTATAT+GGG - Chr5:100603969-100603988 MsG0580029673.01.T01:intron 40.0%
AGACAATCGTGTAGTCTGTA+AGG + Chr5:100604748-100604767 None:intergenic 40.0%
AGACACTAAAACCTCACCAT+TGG + Chr5:100603263-100603282 None:intergenic 40.0%
ATCTGTGTGAAATGAGCCAA+GGG - Chr5:100603858-100603877 MsG0580029673.01.T01:intron 40.0%
CCATTCAAGGACATGATAGA+AGG - Chr5:100604883-100604902 MsG0580029673.01.T01:intron 40.0%
CCTTCTATCATGTCCTTGAA+TGG + Chr5:100604886-100604905 None:intergenic 40.0%
CTAGGATAAGGATTGGAAGT+GGG - Chr5:100602275-100602294 MsG0580029673.01.T01:CDS 40.0%
GAAAATGGGTCAGATATTCC+GGG + Chr5:100603691-100603710 None:intergenic 40.0%
GACACTAAAACCTCACCATT+GGG + Chr5:100603262-100603281 None:intergenic 40.0%
TAGGATAAGGATTGGAAGTG+GGG - Chr5:100602276-100602295 MsG0580029673.01.T01:CDS 40.0%
TAGGCAAGCAATTAAGTGGT+TGG - Chr5:100603583-100603602 MsG0580029673.01.T01:intron 40.0%
TATAAGACCCTAGTTTCGGT+GGG + Chr5:100605210-100605229 None:intergenic 40.0%
TCAGATGAAGACATTATGCG+TGG - Chr5:100605870-100605889 MsG0580029673.01.T01:CDS 40.0%
TGAGAAGCCCTTTAGTTAGA+AGG + Chr5:100605444-100605463 None:intergenic 40.0%
TGAGTTGTCCGCATAGATTA+AGG + Chr5:100605245-100605264 None:intergenic 40.0%
TTATCACTACCAGCTGCTTA+TGG - Chr5:100606113-100606132 MsG0580029673.01.T01:CDS 40.0%
TTCAAGAAGTTCAGAGGAGA+GGG - Chr5:100602318-100602337 MsG0580029673.01.T01:CDS 40.0%
TTTCTAACCCACCGAAACTA+GGG - Chr5:100605200-100605219 MsG0580029673.01.T01:intron 40.0%
! AAGGTTTTCATTCTCGCGAT+CGG - Chr5:100605514-100605533 MsG0580029673.01.T01:intron 40.0%
! AGCTCTTTAAGAACCACAAC+GGG - Chr5:100603165-100603184 MsG0580029673.01.T01:intron 40.0%
! GCTTATGGAACTGCACTTTT+AGG - Chr5:100606128-100606147 MsG0580029673.01.T01:CDS 40.0%
! GGGCAGCATTGTTGTTATAT+AGG - Chr5:100606012-100606031 MsG0580029673.01.T01:CDS 40.0%
! GTGTGATGTGTGAAGCATTT+GGG + Chr5:100604174-100604193 None:intergenic 40.0%
! TATAATGCTGCATTGGCACT+AGG - Chr5:100605051-100605070 MsG0580029673.01.T01:intron 40.0%
! TCTAGGATAAGGATTGGAAG+TGG - Chr5:100602274-100602293 MsG0580029673.01.T01:CDS 40.0%
! TGAGATTCCGGATTTGAGTT+CGG - Chr5:100604675-100604694 MsG0580029673.01.T01:intron 40.0%
!! TTTTTCAATCCAACCCGTTG+TGG + Chr5:100603181-100603200 None:intergenic 40.0%
!!! AGTTTTGAAGCAAGCAGGTT+TGG - Chr5:100602351-100602370 MsG0580029673.01.T01:CDS 40.0%
!!! GAAGTAGTTTTGAAGCAAGC+AGG - Chr5:100602346-100602365 MsG0580029673.01.T01:CDS 40.0%
!!! TTTTAGTTTTTGGTGGTGGC+CGG + Chr5:100604497-100604516 None:intergenic 40.0%
AATGCTCTCTGTAGAAGCCT+TGG + Chr5:100605031-100605050 None:intergenic 45.0%
AGCCAAGGGCTCAGATAAAT+TGG - Chr5:100603872-100603891 MsG0580029673.01.T01:intron 45.0%
AGCTCAGTTCTGCTAGTAGA+TGG - Chr5:100605982-100606001 MsG0580029673.01.T01:CDS 45.0%
AGGACATGATAGAAGGGATG+AGG - Chr5:100604890-100604909 MsG0580029673.01.T01:intron 45.0%
AGGATAAGGATTGGAAGTGG+GGG - Chr5:100602277-100602296 MsG0580029673.01.T01:CDS 45.0%
AGTCCTGAAGTTCATCAGAG+AGG + Chr5:100605353-100605372 None:intergenic 45.0%
ATTCCTTAGACCATCCCCAA+TGG - Chr5:100603244-100603263 MsG0580029673.01.T01:intron 45.0%
CATAGGCGCCTTAATCTATG+CGG - Chr5:100605234-100605253 MsG0580029673.01.T01:intron 45.0%
CATGATAGAAGGGATGAGGA+TGG - Chr5:100604894-100604913 MsG0580029673.01.T01:intron 45.0%
CTACCTCTCTGATGAACTTC+AGG - Chr5:100605347-100605366 MsG0580029673.01.T01:intron 45.0%
CTCTCCTCTGAACTTCTTGA+AGG + Chr5:100602319-100602338 None:intergenic 45.0%
CTTCAAGAAGTTCAGAGGAG+AGG - Chr5:100602317-100602336 MsG0580029673.01.T01:CDS 45.0%
CTTGTGCTAGCTCATCTTGA+GGG + Chr5:100605842-100605861 None:intergenic 45.0%
CTTTCTAACCCACCGAAACT+AGG - Chr5:100605199-100605218 MsG0580029673.01.T01:intron 45.0%
GCCAAGGGCTCAGATAAATT+GGG - Chr5:100603873-100603892 MsG0580029673.01.T01:intron 45.0%
GCGGTATAAGACCCTAGTTT+CGG + Chr5:100605214-100605233 None:intergenic 45.0%
GCTCAGATAAATTGGGACGA+GGG - Chr5:100603880-100603899 MsG0580029673.01.T01:intron 45.0%
GTAACACTCTTCCCCAAGAA+AGG + Chr5:100605388-100605407 None:intergenic 45.0%
GTATAAGACCCTAGTTTCGG+TGG + Chr5:100605211-100605230 None:intergenic 45.0%
TAAAACCTCACCATTGGGGA+TGG + Chr5:100603257-100603276 None:intergenic 45.0%
TACTATGTTGCTGGGACAGT+AGG - Chr5:100604967-100604986 MsG0580029673.01.T01:intron 45.0%
TCCCAATTTATCTGAGCCCT+TGG + Chr5:100603877-100603896 None:intergenic 45.0%
TCTGTAGAAGCCTTGGATTC+AGG + Chr5:100605024-100605043 None:intergenic 45.0%
TTTGGTGAGAGAAGAGAGGA+GGG - Chr5:100602369-100602388 MsG0580029673.01.T01:CDS 45.0%
! ATAGATTAAGGCGCCTATGG+CGG + Chr5:100605233-100605252 None:intergenic 45.0%
! CGAGCTTAGCTCAGTTGATA+AGG - Chr5:100604434-100604453 MsG0580029673.01.T01:intron 45.0%
! CTTTAAGAACCACAACGGGT+TGG - Chr5:100603169-100603188 MsG0580029673.01.T01:intron 45.0%
! GGTGTGATGTGTGAAGCATT+TGG + Chr5:100604175-100604194 None:intergenic 45.0%
!! GTGGTCTTCTCCTTTTTCGT+GGG + Chr5:100604574-100604593 None:intergenic 45.0%
!! TCAGGTGCTATTCCCATTAC+AGG + Chr5:100605006-100605025 None:intergenic 45.0%
!! TGTGGTCTTCTCCTTTTTCG+TGG + Chr5:100604575-100604594 None:intergenic 45.0%
!!! TTTAGTTTTTGGTGGTGGCC+GGG + Chr5:100604496-100604515 None:intergenic 45.0%
!! AAAAATTACTTATTATTTAT+TGG - Chr5:100602960-100602979 MsG0580029673.01.T01:intron 5.0%
!! ATTAAATATATATTAGTAAT+TGG + Chr5:100603504-100603523 None:intergenic 5.0%
AACAACAATGCTGCCCACAC+AGG + Chr5:100606008-100606027 None:intergenic 50.0%
AGTGCAGTTCCATAAGCAGC+TGG + Chr5:100606125-100606144 None:intergenic 50.0%
CAACATGATGTTCGGGGAGT+TGG + Chr5:100605410-100605429 None:intergenic 50.0%
CAACTCCCCGAACATCATGT+TGG - Chr5:100605408-100605427 MsG0580029673.01.T01:intron 50.0%
CAAGATGAGCTAGCACAAGC+TGG - Chr5:100605843-100605862 MsG0580029673.01.T01:intron 50.0%
CCTTCGTCCGAACTCAAATC+CGG + Chr5:100604685-100604704 None:intergenic 50.0%
GCTTGTGCTAGCTCATCTTG+AGG + Chr5:100605843-100605862 None:intergenic 50.0%
GGCTCAGATAAATTGGGACG+AGG - Chr5:100603879-100603898 MsG0580029673.01.T01:intron 50.0%
GGGAATAGCACCTGAATCCA+AGG - Chr5:100605011-100605030 MsG0580029673.01.T01:intron 50.0%
GTCAGATATTCCGGGACGAA+GGG + Chr5:100603683-100603702 None:intergenic 50.0%
TCACCATTGGGGATGGTCTA+AGG + Chr5:100603250-100603269 None:intergenic 50.0%
TGCTAGTAGATGGCCTGTGT+GGG - Chr5:100605992-100606011 MsG0580029673.01.T01:CDS 50.0%
TTAGACCATCCCCAATGGTG+AGG - Chr5:100603249-100603268 MsG0580029673.01.T01:CDS 50.0%
TTGGTGAGAGAAGAGAGGAG+GGG - Chr5:100602370-100602389 MsG0580029673.01.T01:CDS 50.0%
! AAGGTCTGAGGTTCAAACCC+CGG - Chr5:100604475-100604494 MsG0580029673.01.T01:intron 50.0%
! CGCATAGATTAAGGCGCCTA+TGG + Chr5:100605236-100605255 None:intergenic 50.0%
! CTAGGGTCTTATACCGCCAT+AGG - Chr5:100605217-100605236 MsG0580029673.01.T01:intron 50.0%
! GTTTGGTGAGAGAAGAGAGG+AGG - Chr5:100602368-100602387 MsG0580029673.01.T01:CDS 50.0%
!! CAGGTTTGGTGAGAGAAGAG+AGG - Chr5:100602365-100602384 MsG0580029673.01.T01:CDS 50.0%
!!! TTAGTTTTTGGTGGTGGCCG+GGG + Chr5:100604495-100604514 None:intergenic 50.0%
AAGTACCACTCCCTTCGTCC+CGG - Chr5:100603670-100603689 MsG0580029673.01.T01:intron 55.0%
ACACATCACACCAGCAGCCT+TGG - Chr5:100604183-100604202 MsG0580029673.01.T01:CDS 55.0%
ACCAGCAGCCTTGGACAGAT+GGG - Chr5:100604192-100604211 MsG0580029673.01.T01:CDS 55.0%
ATATTCCGGGACGAAGGGAG+TGG + Chr5:100603678-100603697 None:intergenic 55.0%
CCTTGGACAGATGGGAGCAA+CGG - Chr5:100604200-100604219 MsG0580029673.01.T01:CDS 55.0%
CTGCTAGTAGATGGCCTGTG+TGG - Chr5:100605991-100606010 MsG0580029673.01.T01:CDS 55.0%
GGTCAGATATTCCGGGACGA+AGG + Chr5:100603684-100603703 None:intergenic 55.0%
! CCGGATTTGAGTTCGGACGA+AGG - Chr5:100604682-100604701 MsG0580029673.01.T01:intron 55.0%
CACCAGCAGCCTTGGACAGA+TGG - Chr5:100604191-100604210 MsG0580029673.01.T01:CDS 60.0%
CCGTTGCTCCCATCTGTCCA+AGG + Chr5:100604203-100604222 None:intergenic 60.0%
TCCCATCTGTCCAAGGCTGC+TGG + Chr5:100604196-100604215 None:intergenic 60.0%
! GATTGGAAGTGGGGGTGCAG+TGG - Chr5:100602285-100602304 MsG0580029673.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 100602181 100606184 100602181 ID=MsG0580029673.01;Name=MsG0580029673.01
Chr5 mRNA 100602181 100606184 100602181 ID=MsG0580029673.01.T01;Parent=MsG0580029673.01;Name=MsG0580029673.01.T01;_AED=0.37;_eAED=0.37;_QI=0|0|0|1|1|1|5|0|388
Chr5 exon 100605848 100606184 100605848 ID=MsG0580029673.01.T01:exon:36571;Parent=MsG0580029673.01.T01
Chr5 exon 100604365 100604415 100604365 ID=MsG0580029673.01.T01:exon:36570;Parent=MsG0580029673.01.T01
Chr5 exon 100604056 100604228 100604056 ID=MsG0580029673.01.T01:exon:36569;Parent=MsG0580029673.01.T01
Chr5 exon 100603247 100603482 100603247 ID=MsG0580029673.01.T01:exon:36568;Parent=MsG0580029673.01.T01
Chr5 exon 100602181 100602550 100602181 ID=MsG0580029673.01.T01:exon:36567;Parent=MsG0580029673.01.T01
Chr5 CDS 100605848 100606184 100605848 ID=MsG0580029673.01.T01:cds;Parent=MsG0580029673.01.T01
Chr5 CDS 100604365 100604415 100604365 ID=MsG0580029673.01.T01:cds;Parent=MsG0580029673.01.T01
Chr5 CDS 100604056 100604228 100604056 ID=MsG0580029673.01.T01:cds;Parent=MsG0580029673.01.T01
Chr5 CDS 100603247 100603482 100603247 ID=MsG0580029673.01.T01:cds;Parent=MsG0580029673.01.T01
Chr5 CDS 100602181 100602550 100602181 ID=MsG0580029673.01.T01:cds;Parent=MsG0580029673.01.T01
Gene Sequence

>MsG0580029673.01.T01

ATGTCTAGTATTGTTGTTAGGGTGAATTGTGATGCAAAATCATTGGTGGGTATTTCTAGAATTGGAAGAAGAGAAAAGAGTGTAAGAATGTGTTCTAGGATAAGGATTGGAAGTGGGGGTGCAGTGGTAGCAGAACCTTCAAGAAGTTCAGAGGAGAGGGTGTATGAAGTAGTTTTGAAGCAAGCAGGTTTGGTGAGAGAAGAGAGGAGGGGTGCAAATATAGAATTTGATTTTGAGAAAACAATTGAAGGTGATTTTAGCAATGGAGATTTATTGAATTCTGCTTATGATCGGTGTGGTGAAGTTTGTGCTGAATATGCCAAGACTTTTTACCTAGGTACACAATTGATGACACAAGAACGCCGAAAAGCTATATGGGCAATCTATGTATGGTGTAGAAGAACTGATGAACTAGTAGATGGCCCAAATGCTTCACACATCACACCAGCAGCCTTGGACAGATGGGAGCAACGGTTAACTGATGTTTTTGAATGTCGACCATATGATATGTTTGATGCTGCTCTCTCACACACTGTCTCTAAGTACCCTGTTGATATTCAGCCATTCAAGGACATGATAGAAGGGATGAGGATGGATTTGAGAAAGTCAAGATACAACAACTTTGATGAGCTCTACCTTTATTGTTACTATGTTGCTGGGACAGTAGGTCTTATGAGTGTTCCTGTAATGGGAATAGCACCTGAATCCAAGGCTTCTACAGAGAGCATTTATAATGCTGCATTGGCACTAGGCATTGCGAATCAACTCACCAATATACTCAGAGATGTTGGAGAAGATGCTAGAAGAGGAAGAGTGTATCTCCCTCAAGATGAGCTAGCACAAGCTGGCCTATCAGATGAAGACATTATGCGTGGAAAAGTAACAGACAAATGGAGAAATTTCATGAAGGGACAAATAAAAAGGGCAAGAATGTTCTTTGATGAAGCAGAAAAGGGTGTCTCAGAGCTCAGTTCTGCTAGTAGATGGCCTGTGTGGGCAGCATTGTTGTTATATAGGCAGATATTAGATTCTATTGAAGCCAATGATTATAATAACTTCACAAAAAGGGCTTATGTTGGAAAAGTCAATAAGCTATTATCACTACCAGCTGCTTATGGAACTGCACTTTTAGGTCCTAAAAAGTTAACCAAATTGTTTATGAGATGA

Protein sequence

>MsG0580029673.01.T01

MSSIVVRVNCDAKSLVGISRIGRREKSVRMCSRIRIGSGGAVVAEPSRSSEERVYEVVLKQAGLVREERRGANIEFDFEKTIEGDFSNGDLLNSAYDRCGEVCAEYAKTFYLGTQLMTQERRKAIWAIYVWCRRTDELVDGPNASHITPAALDRWEQRLTDVFECRPYDMFDAALSHTVSKYPVDIQPFKDMIEGMRMDLRKSRYNNFDELYLYCYYVAGTVGLMSVPVMGIAPESKASTESIYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIMRGKVTDKWRNFMKGQIKRARMFFDEAEKGVSELSSASRWPVWAALLLYRQILDSIEANDYNNFTKRAYVGKVNKLLSLPAAYGTALLGPKKLTKLFMR*