Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043624.01.T01 | AET02328.1 | 97.148 | 526 | 14 | 1 | 1 | 525 | 1 | 526 | 0 | 1041 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043624.01.T01 | Q9SA38 | 46.124 | 516 | 267 | 4 | 1 | 509 | 1 | 512 | 5.90E-172 | 498 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043624.01.T01 | G7LG23 | 97.148 | 526 | 14 | 1 | 1 | 525 | 1 | 526 | 0.0 | 1041 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180004187.01 | MsG0880043624.01 | 0.832536 | 8.939365e-56 | 1.002107e-52 |
| MsG0180004301.01 | MsG0880043624.01 | 0.802129 | 6.495701e-49 | 3.156918e-46 |
| MsG0180005226.01 | MsG0880043624.01 | 0.807206 | 5.661791e-50 | 3.134554e-47 |
| MsG0880043624.01 | MsG0880045755.01 | 0.824464 | 7.958031e-54 | 7.053800e-51 |
| MsG0880043624.01 | MsG0880047251.01 | 0.802683 | 4.993149e-49 | 2.461199e-46 |
| MsG0280010625.01 | MsG0880043624.01 | 0.812034 | 5.193953e-51 | 3.266331e-48 |
| MsG0280011113.01 | MsG0880043624.01 | 0.846372 | 2.264544e-59 | 3.889275e-56 |
| MsG0580024031.01 | MsG0880043624.01 | 0.801767 | 7.707617e-49 | 3.711507e-46 |
| MsG0480018239.01 | MsG0880043624.01 | 0.813286 | 2.764711e-51 | 1.797966e-48 |
| MsG0580029673.01 | MsG0880043624.01 | 0.817399 | 3.365516e-52 | 2.448341e-49 |
| MsG0580029820.01 | MsG0880043624.01 | 0.820811 | 5.632198e-53 | 4.502857e-50 |
| MsG0680030399.01 | MsG0880043624.01 | 0.805961 | 1.036518e-49 | 5.558089e-47 |
| MsG0280006748.01 | MsG0880043624.01 | -0.817993 | 2.471699e-52 | 1.827636e-49 |
| MsG0280007142.01 | MsG0880043624.01 | 0.806634 | 7.477815e-50 | 4.078894e-47 |
| MsG0280007600.01 | MsG0880043624.01 | 0.802853 | 4.605291e-49 | 2.279946e-46 |
| MsG0280008466.01 | MsG0880043624.01 | 0.806271 | 8.919587e-50 | 4.820984e-47 |
| MsG0780036586.01 | MsG0880043624.01 | 0.803315 | 3.696465e-49 | 1.851632e-46 |
| MsG0780036747.01 | MsG0880043624.01 | 0.811694 | 6.159770e-51 | 3.838546e-48 |
| MsG0780038108.01 | MsG0880043624.01 | 0.809127 | 2.205768e-50 | 1.284419e-47 |
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043624.01.T01 | MTR_8g039190 | 97.148 | 526 | 14 | 1 | 1 | 525 | 1 | 526 | 0.0 | 1041 |
| MsG0880043624.01.T01 | MTR_8g039070 | 90.114 | 526 | 15 | 3 | 1 | 525 | 1 | 490 | 0.0 | 939 |
| MsG0880043624.01.T01 | MTR_5g080050 | 86.476 | 525 | 64 | 4 | 1 | 520 | 1 | 523 | 0.0 | 911 |
| MsG0880043624.01.T01 | MTR_5g082760 | 83.271 | 532 | 75 | 3 | 1 | 518 | 1 | 532 | 0.0 | 884 |
| MsG0880043624.01.T01 | MTR_4g030040 | 71.285 | 498 | 138 | 3 | 11 | 507 | 12 | 505 | 0.0 | 720 |
| MsG0880043624.01.T01 | MTR_4g030040 | 71.283 | 491 | 137 | 2 | 18 | 507 | 17 | 504 | 0.0 | 715 |
| MsG0880043624.01.T01 | MTR_4g030210 | 71.343 | 499 | 138 | 2 | 10 | 507 | 15 | 509 | 0.0 | 713 |
| MsG0880043624.01.T01 | MTR_8g447340 | 43.191 | 514 | 278 | 5 | 12 | 514 | 15 | 525 | 1.09e-158 | 462 |
| MsG0880043624.01.T01 | MTR_2g081930 | 32.220 | 509 | 318 | 10 | 14 | 504 | 24 | 523 | 8.71e-77 | 251 |
| MsG0880043624.01.T01 | MTR_4g120720 | 39.344 | 305 | 146 | 6 | 77 | 377 | 2 | 271 | 1.47e-64 | 211 |
| MsG0880043624.01.T01 | MTR_2g081950 | 30.357 | 392 | 244 | 7 | 128 | 499 | 18 | 400 | 7.30e-48 | 171 |
| MsG0880043624.01.T01 | MTR_4g081490 | 29.082 | 392 | 252 | 7 | 129 | 507 | 66 | 444 | 7.73e-47 | 169 |
| MsG0880043624.01.T01 | MTR_2g081960 | 32.110 | 109 | 73 | 1 | 26 | 133 | 32 | 140 | 2.65e-16 | 76.6 |
| MsG0880043624.01.T01 | MTR_4g081480 | 29.091 | 110 | 73 | 1 | 26 | 130 | 36 | 145 | 7.42e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043624.01.T01 | AT1G16390 | 46.124 | 516 | 267 | 4 | 1 | 509 | 1 | 512 | 6.01e-173 | 498 |
| MsG0880043624.01.T01 | AT1G79360 | 48.290 | 497 | 244 | 8 | 24 | 507 | 19 | 515 | 6.28e-170 | 491 |
| MsG0880043624.01.T01 | AT1G16370 | 44.223 | 502 | 266 | 9 | 16 | 510 | 21 | 515 | 5.22e-148 | 435 |
| MsG0880043624.01.T01 | AT1G79410 | 44.204 | 509 | 270 | 9 | 9 | 510 | 8 | 509 | 1.74e-146 | 431 |
| MsG0880043624.01.T01 | AT1G73220 | 37.938 | 514 | 291 | 9 | 11 | 507 | 27 | 529 | 5.15e-104 | 322 |
| MsG0880043624.01.T01 | AT3G20660 | 30.495 | 505 | 323 | 7 | 16 | 507 | 25 | 514 | 6.85e-74 | 244 |
| MsG0880043624.01.T01 | AT3G51490 | 29.891 | 184 | 123 | 3 | 114 | 293 | 44 | 225 | 5.76e-14 | 75.1 |
| MsG0880043624.01.T01 | AT3G51490 | 29.891 | 184 | 123 | 3 | 114 | 293 | 44 | 225 | 6.22e-14 | 75.1 |
| MsG0880043624.01.T01 | AT3G51490 | 29.714 | 175 | 117 | 3 | 123 | 293 | 3 | 175 | 1.37e-13 | 73.9 |
| MsG0880043624.01.T01 | AT1G20840 | 26.875 | 160 | 106 | 2 | 141 | 293 | 68 | 223 | 2.77e-12 | 70.1 |
| MsG0880043624.01.T01 | AT1G20840 | 26.875 | 160 | 106 | 2 | 141 | 293 | 68 | 223 | 2.77e-12 | 70.1 |
Find 68 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACAATCTTCTTTCTTTAT+AGG | 0.092456 | 8:+27905176 | MsG0880043624.01.T01:CDS |
| CCGCTAGCTGTTGGAAATTT+AGG | 0.142555 | 8:+27905848 | MsG0880043624.01.T01:CDS |
| TTCTTTATAGGTTGTCTTCT+TGG | 0.148431 | 8:+27905188 | MsG0880043624.01.T01:CDS |
| TGAAATTCTTGACTGGTTTC+TGG | 0.161801 | 8:+27905342 | MsG0880043624.01.T01:CDS |
| TTTAGGATTCAACATTTATT+TGG | 0.226455 | 8:+27905865 | MsG0880043624.01.T01:CDS |
| ATTTCATCCCATGATAAAAT+TGG | 0.227150 | 8:-27904885 | None:intergenic |
| CAAAATGAACAACGTAAAAT+TGG | 0.241557 | 8:-27906266 | None:intergenic |
| TTGTGTAGCAACATATTTCT+TGG | 0.258918 | 8:+27905922 | MsG0880043624.01.T01:CDS |
| CCTCCCCGCCGATATCAAAA+AGG | 0.267652 | 8:-27906194 | None:intergenic |
| TTGTGTGATGTGTGCTGTTT+TGG | 0.274294 | 8:+27906000 | MsG0880043624.01.T01:CDS |
| GTAAACTCCCAAGATCTTCT+TGG | 0.282784 | 8:+27905075 | MsG0880043624.01.T01:CDS |
| GAATTTGTGCAGTGCCATTT+TGG | 0.286472 | 8:-27905026 | None:intergenic |
| ACACTGATAATTATCCAAAA+TGG | 0.291848 | 8:+27905012 | MsG0880043624.01.T01:CDS |
| CCATTCAGCGCTAACTTTCT+CGG | 0.316763 | 8:-27905402 | None:intergenic |
| GCATTAGCTGATTCATCTAT+TGG | 0.326922 | 8:+27905227 | MsG0880043624.01.T01:CDS |
| TCCCAAGATCTTCTTGGTCT+TGG | 0.333286 | 8:+27905081 | MsG0880043624.01.T01:CDS |
| CATGGAAATCTCTTTACATT+TGG | 0.341347 | 8:+27905513 | MsG0880043624.01.T01:CDS |
| TTTCAACTTTACTCATCAAT+AGG | 0.345221 | 8:+27905737 | MsG0880043624.01.T01:CDS |
| ATTTACTCGTATGGTGTGTT+TGG | 0.348466 | 8:+27906226 | MsG0880043624.01.T01:CDS |
| ATATTAACCGAAACTCTTCA+TGG | 0.350150 | 8:+27905495 | MsG0880043624.01.T01:CDS |
| GGACTTGGAATGGTTTATTT+CGG | 0.368666 | 8:+27905821 | MsG0880043624.01.T01:CDS |
| CAAACACAATCATTTCTCAT+TGG | 0.381344 | 8:+27905117 | MsG0880043624.01.T01:CDS |
| GCTGTTATGATCCTTGGAAT+TGG | 0.385321 | 8:+27905800 | MsG0880043624.01.T01:CDS |
| CCCAAGATCTTCTTGGTCTT+GGG | 0.388239 | 8:+27905082 | MsG0880043624.01.T01:CDS |
| GAGATTTCCATGAAGAGTTT+CGG | 0.398230 | 8:-27905502 | None:intergenic |
| GAGAATTGTTTCATAAAAGA+TGG | 0.402166 | 8:+27905759 | MsG0880043624.01.T01:CDS |
| ATAGAAAACACAAGAATTGA+AGG | 0.420097 | 8:-27905962 | None:intergenic |
| ATGATAGCTGTTATGATCCT+TGG | 0.426791 | 8:+27905794 | MsG0880043624.01.T01:CDS |
| TCCCAAGACCAAGAAGATCT+TGG | 0.437312 | 8:-27905083 | None:intergenic |
| GGTTTCTGGCGTTCATCCAT+CGG | 0.445814 | 8:+27905356 | MsG0880043624.01.T01:CDS |
| CCGAGAAAGTTAGCGCTGAA+TGG | 0.463476 | 8:+27905402 | MsG0880043624.01.T01:CDS |
| ATGATCCTTGGAATTGGACT+TGG | 0.469021 | 8:+27905806 | MsG0880043624.01.T01:CDS |
| TTCGGTATGCCGCTAGCTGT+TGG | 0.469099 | 8:+27905839 | MsG0880043624.01.T01:CDS |
| CCCAAGACCAAGAAGATCTT+GGG | 0.475977 | 8:-27905082 | None:intergenic |
| GTTTCTGGCGTTCATCCATC+GGG | 0.485333 | 8:+27905357 | MsG0880043624.01.T01:CDS |
| GTGAGACAAGCTATTGTGTT+CGG | 0.487863 | 8:+27906157 | MsG0880043624.01.T01:CDS |
| CCTTGGAATTGGACTTGGAA+TGG | 0.492835 | 8:+27905811 | MsG0880043624.01.T01:CDS |
| TAGAGTACCAGCTGCTAAAG+TGG | 0.498469 | 8:+27906027 | MsG0880043624.01.T01:CDS |
| TGAGAAATGATTGTGTTTGA+AGG | 0.499350 | 8:-27905113 | None:intergenic |
| GAAACCAGTCAAGAATTTCA+TGG | 0.500112 | 8:-27905339 | None:intergenic |
| ATGGGGTACATGTCTTTACC+TGG | 0.502965 | 8:+27905464 | MsG0880043624.01.T01:CDS |
| AGAACAATCCCTATAGTCTC+TGG | 0.504851 | 8:-27906289 | None:intergenic |
| GATTGTTCTTTGTGATACAA+TGG | 0.520244 | 8:+27906303 | MsG0880043624.01.T01:CDS |
| AGAATTGTTTCATAAAAGAT+GGG | 0.525041 | 8:+27905760 | MsG0880043624.01.T01:CDS |
| AAATATGTTGCTACACAAGA+AGG | 0.528534 | 8:-27905917 | None:intergenic |
| TCCGCCATGAAATTCTTGAC+TGG | 0.529656 | 8:+27905335 | MsG0880043624.01.T01:CDS |
| GCTGAATGGCGGTTTAGAGT+TGG | 0.556204 | 8:+27905416 | MsG0880043624.01.T01:CDS |
| TGTGCTAGCACATTCATCAC+TGG | 0.561957 | 8:+27905149 | MsG0880043624.01.T01:CDS |
| CCTAAATTTCCAACAGCTAG+CGG | 0.562333 | 8:-27905848 | None:intergenic |
| GCTAAAACCACTTTAGCAGC+TGG | 0.570563 | 8:-27906034 | None:intergenic |
| GAGAAATGATTGTGTTTGAA+GGG | 0.574527 | 8:-27905112 | None:intergenic |
| ATGACAGAGTAACATATAGC+AGG | 0.585106 | 8:-27905545 | None:intergenic |
| CGGTTAATATAAGCGAAACC+AGG | 0.588496 | 8:-27905482 | None:intergenic |
| CCTAGGTGGCTTGTTATGCA+AGG | 0.598767 | 8:+27905593 | MsG0880043624.01.T01:CDS |
| CCATTCCAAGTCCAATTCCA+AGG | 0.603433 | 8:-27905811 | None:intergenic |
| TCTTTGTTACTGAGTCGCCT+AGG | 0.606435 | 8:+27905576 | MsG0880043624.01.T01:CDS |
| AGTTTACAAATATCAGAGGA+TGG | 0.609310 | 8:-27905059 | None:intergenic |
| AACAAGAACACATGTCCCGA+TGG | 0.611953 | 8:-27905372 | None:intergenic |
| TGTTGAAAAGAATATGAGCA+TGG | 0.613527 | 8:-27905297 | None:intergenic |
| TGGGAGTTTACAAATATCAG+AGG | 0.623076 | 8:-27905063 | None:intergenic |
| GAGGAACACAACAACGTCGT+TGG | 0.627045 | 8:+27906135 | MsG0880043624.01.T01:CDS |
| CCTATAAAGAAAGAAGATTG+TGG | 0.630632 | 8:-27905176 | None:intergenic |
| GTTGTGTTCCTCACACATGT+CGG | 0.637523 | 8:-27906124 | None:intergenic |
| CCTTGCATAACAAGCCACCT+AGG | 0.639898 | 8:-27905593 | None:intergenic |
| AGTTGTTTCCGACATGTGTG+AGG | 0.640373 | 8:+27906116 | MsG0880043624.01.T01:CDS |
| AGAAAGTTAGCGCTGAATGG+CGG | 0.664310 | 8:+27905405 | MsG0880043624.01.T01:CDS |
| TTGTTACTGAGTCGCCTAGG+TGG | 0.666067 | 8:+27905579 | MsG0880043624.01.T01:CDS |
| ACCAGTCAAGAATTTCATGG+CGG | 0.749781 | 8:-27905336 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAGTTTATCAAATTTT+GGG | + | Chr8:27904913-27904932 | MsG0880043624.01.T01:CDS | 10.0% |
| !!! | AAAAATGAAACTTTTTCTTT+TGG | - | Chr8:27905719-27905738 | None:intergenic | 15.0% |
| !!! | AAAATGAAACTTTTTCTTTT+GGG | - | Chr8:27905718-27905737 | None:intergenic | 15.0% |
| !!! | GAAAAAAGTTTATCAAATTT+TGG | + | Chr8:27904912-27904931 | MsG0880043624.01.T01:CDS | 15.0% |
| !! | AAAAACAATATTTACTCGTA+TGG | + | Chr8:27906217-27906236 | MsG0880043624.01.T01:CDS | 20.0% |
| !! | AGAATTGTTTCATAAAAGAT+GGG | + | Chr8:27905760-27905779 | MsG0880043624.01.T01:CDS | 20.0% |
| !!! | AAAAGAAACCAATTTTATCA+TGG | + | Chr8:27904877-27904896 | MsG0880043624.01.T01:CDS | 20.0% |
| !!! | AAAGAAACCAATTTTATCAT+GGG | + | Chr8:27904878-27904897 | MsG0880043624.01.T01:CDS | 20.0% |
| !!! | AAATGAAACTTTTTCTTTTG+GGG | - | Chr8:27905717-27905736 | None:intergenic | 20.0% |
| !!! | ATTCTTGTGTTTTCTATATT+AGG | + | Chr8:27905968-27905987 | MsG0880043624.01.T01:CDS | 20.0% |
| !!! | TATTCTTTTCAACAAATGTT+TGG | + | Chr8:27905306-27905325 | MsG0880043624.01.T01:CDS | 20.0% |
| !!! | TTTAGGATTCAACATTTATT+TGG | + | Chr8:27905865-27905884 | MsG0880043624.01.T01:CDS | 20.0% |
| ! | ACACTGATAATTATCCAAAA+TGG | + | Chr8:27905012-27905031 | MsG0880043624.01.T01:CDS | 25.0% |
| ! | ATAGAAAACACAAGAATTGA+AGG | - | Chr8:27905965-27905984 | None:intergenic | 25.0% |
| ! | ATGAATCAACATGAAAAAAC+AGG | + | Chr8:27906364-27906383 | MsG0880043624.01.T01:CDS | 25.0% |
| ! | ATTTCATCCCATGATAAAAT+TGG | - | Chr8:27904888-27904907 | None:intergenic | 25.0% |
| ! | CAAAATGAACAACGTAAAAT+TGG | - | Chr8:27906269-27906288 | None:intergenic | 25.0% |
| ! | GAGAATTGTTTCATAAAAGA+TGG | + | Chr8:27905759-27905778 | MsG0880043624.01.T01:CDS | 25.0% |
| ! | TTTCAACTTTACTCATCAAT+AGG | + | Chr8:27905737-27905756 | MsG0880043624.01.T01:CDS | 25.0% |
| !! | AAAGTTTATCAAATTTTGGG+TGG | + | Chr8:27904916-27904935 | MsG0880043624.01.T01:CDS | 25.0% |
| !! | AGTATTTTACTTTCACAATG+GGG | + | Chr8:27905447-27905466 | MsG0880043624.01.T01:CDS | 25.0% |
| !! | GAGTATTTTACTTTCACAAT+GGG | + | Chr8:27905446-27905465 | MsG0880043624.01.T01:CDS | 25.0% |
| !! | TGAGTATTTTACTTTCACAA+TGG | + | Chr8:27905445-27905464 | MsG0880043624.01.T01:CDS | 25.0% |
| !!! | AATGAAACTTTTTCTTTTGG+GGG | - | Chr8:27905716-27905735 | None:intergenic | 25.0% |
| !!! | TGTTTTTTCATGTTGATTCA+TGG | - | Chr8:27906365-27906384 | None:intergenic | 25.0% |
| AAATATGTTGCTACACAAGA+AGG | - | Chr8:27905920-27905939 | None:intergenic | 30.0% | |
| AGTTTACAAATATCAGAGGA+TGG | - | Chr8:27905062-27905081 | None:intergenic | 30.0% | |
| ATATTAACCGAAACTCTTCA+TGG | + | Chr8:27905495-27905514 | MsG0880043624.01.T01:CDS | 30.0% | |
| CAAACACAATCATTTCTCAT+TGG | + | Chr8:27905117-27905136 | MsG0880043624.01.T01:CDS | 30.0% | |
| CATGGAAATCTCTTTACATT+TGG | + | Chr8:27905513-27905532 | MsG0880043624.01.T01:CDS | 30.0% | |
| CCACAATCTTCTTTCTTTAT+AGG | + | Chr8:27905176-27905195 | MsG0880043624.01.T01:CDS | 30.0% | |
| CCTATAAAGAAAGAAGATTG+TGG | - | Chr8:27905179-27905198 | None:intergenic | 30.0% | |
| GAGAAATGATTGTGTTTGAA+GGG | - | Chr8:27905115-27905134 | None:intergenic | 30.0% | |
| GATTGTTCTTTGTGATACAA+TGG | + | Chr8:27906303-27906322 | MsG0880043624.01.T01:CDS | 30.0% | |
| TGAGAAATGATTGTGTTTGA+AGG | - | Chr8:27905116-27905135 | None:intergenic | 30.0% | |
| TGTTGAAAAGAATATGAGCA+TGG | - | Chr8:27905300-27905319 | None:intergenic | 30.0% | |
| TTCTTTATAGGTTGTCTTCT+TGG | + | Chr8:27905188-27905207 | MsG0880043624.01.T01:CDS | 30.0% | |
| TTGTGTAGCAACATATTTCT+TGG | + | Chr8:27905922-27905941 | MsG0880043624.01.T01:CDS | 30.0% | |
| ! | ATTCTGTCCCTTTTTGATAT+CGG | + | Chr8:27906186-27906205 | MsG0880043624.01.T01:CDS | 30.0% |
| ! | CTTGTGTTTTCTATATTAGG+TGG | + | Chr8:27905971-27905990 | MsG0880043624.01.T01:CDS | 30.0% |
| !! | TTTATCAAATTTTGGGTGGA+TGG | + | Chr8:27904920-27904939 | MsG0880043624.01.T01:CDS | 30.0% |
| !!! | AGTAGTTTTTAGTGCTTCAA+TGG | + | Chr8:27905889-27905908 | MsG0880043624.01.T01:CDS | 30.0% |
| ATGACAGAGTAACATATAGC+AGG | - | Chr8:27905548-27905567 | None:intergenic | 35.0% | |
| ATGATAGCTGTTATGATCCT+TGG | + | Chr8:27905794-27905813 | MsG0880043624.01.T01:CDS | 35.0% | |
| ATTTACTCGTATGGTGTGTT+TGG | + | Chr8:27906226-27906245 | MsG0880043624.01.T01:CDS | 35.0% | |
| GAAACCAGTCAAGAATTTCA+TGG | - | Chr8:27905342-27905361 | None:intergenic | 35.0% | |
| GAGATTTCCATGAAGAGTTT+CGG | - | Chr8:27905505-27905524 | None:intergenic | 35.0% | |
| GGACTTGGAATGGTTTATTT+CGG | + | Chr8:27905821-27905840 | MsG0880043624.01.T01:CDS | 35.0% | |
| TGGGAGTTTACAAATATCAG+AGG | - | Chr8:27905066-27905085 | None:intergenic | 35.0% | |
| ! | GCATTAGCTGATTCATCTAT+TGG | + | Chr8:27905227-27905246 | MsG0880043624.01.T01:CDS | 35.0% |
| ! | TCATTTTGCCAGAGACTATA+GGG | + | Chr8:27906281-27906300 | MsG0880043624.01.T01:CDS | 35.0% |
| ! | TTAGCGATGGTTGCATTTTT+CGG | + | Chr8:27906052-27906071 | MsG0880043624.01.T01:CDS | 35.0% |
| ! | TTCATTTTGCCAGAGACTAT+AGG | + | Chr8:27906280-27906299 | MsG0880043624.01.T01:CDS | 35.0% |
| !! | TGAAATTCTTGACTGGTTTC+TGG | + | Chr8:27905342-27905361 | MsG0880043624.01.T01:CDS | 35.0% |
| ACCAGTCAAGAATTTCATGG+CGG | - | Chr8:27905339-27905358 | None:intergenic | 40.0% | |
| AGAACAATCCCTATAGTCTC+TGG | - | Chr8:27906292-27906311 | None:intergenic | 40.0% | |
| ATGATCCTTGGAATTGGACT+TGG | + | Chr8:27905806-27905825 | MsG0880043624.01.T01:CDS | 40.0% | |
| CCTAAATTTCCAACAGCTAG+CGG | - | Chr8:27905851-27905870 | None:intergenic | 40.0% | |
| CGGTTAATATAAGCGAAACC+AGG | - | Chr8:27905485-27905504 | None:intergenic | 40.0% | |
| GCTGTTATGATCCTTGGAAT+TGG | + | Chr8:27905800-27905819 | MsG0880043624.01.T01:CDS | 40.0% | |
| GTAAACTCCCAAGATCTTCT+TGG | + | Chr8:27905075-27905094 | MsG0880043624.01.T01:CDS | 40.0% | |
| GTGAGACAAGCTATTGTGTT+CGG | + | Chr8:27906157-27906176 | MsG0880043624.01.T01:CDS | 40.0% | |
| !! | TTTTCTTTTGGGGGCAGTTT+GGG | - | Chr8:27905707-27905726 | None:intergenic | 40.0% |
| !! | TTTTTCTTTTGGGGGCAGTT+TGG | - | Chr8:27905708-27905727 | None:intergenic | 40.0% |
| !!! | GAATTTGTGCAGTGCCATTT+TGG | - | Chr8:27905029-27905048 | None:intergenic | 40.0% |
| !!! | TGCTAAAGTGGTTTTAGCGA+TGG | + | Chr8:27906039-27906058 | MsG0880043624.01.T01:CDS | 40.0% |
| !!! | TTGTGTGATGTGTGCTGTTT+TGG | + | Chr8:27906000-27906019 | MsG0880043624.01.T01:CDS | 40.0% |
| AACAAGAACACATGTCCCGA+TGG | - | Chr8:27905375-27905394 | None:intergenic | 45.0% | |
| ATGGGGTACATGTCTTTACC+TGG | + | Chr8:27905464-27905483 | MsG0880043624.01.T01:CDS | 45.0% | |
| CCATTCAGCGCTAACTTTCT+CGG | - | Chr8:27905405-27905424 | None:intergenic | 45.0% | |
| CCATTCCAAGTCCAATTCCA+AGG | - | Chr8:27905814-27905833 | None:intergenic | 45.0% | |
| CCCAAGACCAAGAAGATCTT+GGG | - | Chr8:27905085-27905104 | None:intergenic | 45.0% | |
| CCGCTAGCTGTTGGAAATTT+AGG | + | Chr8:27905848-27905867 | MsG0880043624.01.T01:CDS | 45.0% | |
| CCTTGGAATTGGACTTGGAA+TGG | + | Chr8:27905811-27905830 | MsG0880043624.01.T01:CDS | 45.0% | |
| GCTAAAACCACTTTAGCAGC+TGG | - | Chr8:27906037-27906056 | None:intergenic | 45.0% | |
| GTTGTGTTCCTCACACATGT+CGG | - | Chr8:27906127-27906146 | None:intergenic | 45.0% | |
| TCCCAAGACCAAGAAGATCT+TGG | - | Chr8:27905086-27905105 | None:intergenic | 45.0% | |
| TCCCAAGATCTTCTTGGTCT+TGG | + | Chr8:27905081-27905100 | MsG0880043624.01.T01:CDS | 45.0% | |
| TCCGCCATGAAATTCTTGAC+TGG | + | Chr8:27905335-27905354 | MsG0880043624.01.T01:CDS | 45.0% | |
| TCTTTGTTACTGAGTCGCCT+AGG | + | Chr8:27905576-27905595 | MsG0880043624.01.T01:CDS | 45.0% | |
| TGTGCTAGCACATTCATCAC+TGG | + | Chr8:27905149-27905168 | MsG0880043624.01.T01:CDS | 45.0% | |
| ! | AGAAAGTTAGCGCTGAATGG+CGG | + | Chr8:27905405-27905424 | MsG0880043624.01.T01:CDS | 45.0% |
| ! | AGTTGTTTCCGACATGTGTG+AGG | + | Chr8:27906116-27906135 | MsG0880043624.01.T01:CDS | 45.0% |
| ! | CCCAAGATCTTCTTGGTCTT+GGG | + | Chr8:27905082-27905101 | MsG0880043624.01.T01:CDS | 45.0% |
| ! | CTGTCCCTTTTTGATATCGG+CGG | + | Chr8:27906189-27906208 | MsG0880043624.01.T01:CDS | 45.0% |
| ! | TAGAGTACCAGCTGCTAAAG+TGG | + | Chr8:27906027-27906046 | MsG0880043624.01.T01:CDS | 45.0% |
| ! | TGTCCCTTTTTGATATCGGC+GGG | + | Chr8:27906190-27906209 | MsG0880043624.01.T01:CDS | 45.0% |
| !! | TGCATTTTTCGGCGCTTGTA+CGG | + | Chr8:27906063-27906082 | MsG0880043624.01.T01:CDS | 45.0% |
| CCTTGCATAACAAGCCACCT+AGG | - | Chr8:27905596-27905615 | None:intergenic | 50.0% | |
| CTCCCCGCCGATATCAAAAA+GGG | - | Chr8:27906196-27906215 | None:intergenic | 50.0% | |
| GAGGAACACAACAACGTCGT+TGG | + | Chr8:27906135-27906154 | MsG0880043624.01.T01:CDS | 50.0% | |
| TTGTTACTGAGTCGCCTAGG+TGG | + | Chr8:27905579-27905598 | MsG0880043624.01.T01:CDS | 50.0% | |
| ! | CCGAGAAAGTTAGCGCTGAA+TGG | + | Chr8:27905402-27905421 | MsG0880043624.01.T01:CDS | 50.0% |
| ! | GCTGAATGGCGGTTTAGAGT+TGG | + | Chr8:27905416-27905435 | MsG0880043624.01.T01:CDS | 50.0% |
| ! | GTCCCTTTTTGATATCGGCG+GGG | + | Chr8:27906191-27906210 | MsG0880043624.01.T01:CDS | 50.0% |
| !! | CCTAGGTGGCTTGTTATGCA+AGG | + | Chr8:27905593-27905612 | MsG0880043624.01.T01:CDS | 50.0% |
| !! | GGTTTCTGGCGTTCATCCAT+CGG | + | Chr8:27905356-27905375 | MsG0880043624.01.T01:CDS | 50.0% |
| !! | GTTTCTGGCGTTCATCCATC+GGG | + | Chr8:27905357-27905376 | MsG0880043624.01.T01:CDS | 50.0% |
| CCTCCCCGCCGATATCAAAA+AGG | - | Chr8:27906197-27906216 | None:intergenic | 55.0% | |
| TTCGGTATGCCGCTAGCTGT+TGG | + | Chr8:27905839-27905858 | MsG0880043624.01.T01:CDS | 55.0% | |
| ! | CCTTTTTGATATCGGCGGGG+AGG | + | Chr8:27906194-27906213 | MsG0880043624.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 27904825 | 27906402 | 27904825 | ID=MsG0880043624.01;Name=MsG0880043624.01 |
| Chr8 | mRNA | 27904825 | 27906402 | 27904825 | ID=MsG0880043624.01.T01;Parent=MsG0880043624.01;Name=MsG0880043624.01.T01;_AED=0.39;_eAED=0.39;_QI=0|-1|0|1|-1|1|1|0|525 |
| Chr8 | exon | 27904825 | 27906402 | 27904825 | ID=MsG0880043624.01.T01:exon:6736;Parent=MsG0880043624.01.T01 |
| Chr8 | CDS | 27904825 | 27906402 | 27904825 | ID=MsG0880043624.01.T01:cds;Parent=MsG0880043624.01.T01 |
| Gene Sequence |
| Protein sequence |
