Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024638.01.T01 | XP_003627646.1 | 83.71 | 221 | 27 | 3 | 6 | 217 | 97 | 317 | 3.10E-127 | 372 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024638.01.T01 | O64641 | 49.327 | 223 | 97 | 5 | 8 | 217 | 104 | 323 | 6.06E-65 | 206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024638.01.T01 | G7LCQ5 | 83.710 | 221 | 27 | 3 | 6 | 217 | 97 | 317 | 1.48e-127 | 372 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0680033951.01 | MsG0580024638.01 | PPI |
| MsG0580024638.01 | MsG0680033953.01 | PPI |
| MsG0580024638.01 | MsG0180005648.01 | PPI |
| MsG0580024638.01 | MsG0680033952.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024638.01.T01 | MTR_8g035500 | 83.710 | 221 | 27 | 3 | 6 | 217 | 97 | 317 | 3.75e-131 | 372 |
| MsG0580024638.01.T01 | MTR_8g035520 | 39.819 | 221 | 122 | 5 | 8 | 217 | 104 | 324 | 6.08e-49 | 163 |
| MsG0580024638.01.T01 | MTR_8g035540 | 37.104 | 221 | 128 | 5 | 8 | 217 | 96 | 316 | 1.43e-45 | 154 |
| MsG0580024638.01.T01 | MTR_6g464510 | 37.611 | 226 | 118 | 8 | 8 | 217 | 108 | 326 | 1.49e-40 | 141 |
| MsG0580024638.01.T01 | MTR_1g102160 | 36.404 | 228 | 122 | 7 | 8 | 217 | 103 | 325 | 3.35e-36 | 130 |
| MsG0580024638.01.T01 | MTR_6g464320 | 33.333 | 222 | 128 | 7 | 8 | 214 | 106 | 322 | 4.59e-35 | 127 |
| MsG0580024638.01.T01 | MTR_6g464280 | 32.432 | 222 | 130 | 5 | 8 | 214 | 105 | 321 | 3.03e-33 | 122 |
| MsG0580024638.01.T01 | MTR_0007s0520 | 34.722 | 216 | 117 | 8 | 8 | 205 | 103 | 312 | 3.08e-32 | 119 |
| MsG0580024638.01.T01 | MTR_1g102170 | 34.081 | 223 | 128 | 7 | 8 | 216 | 120 | 337 | 1.22e-31 | 118 |
| MsG0580024638.01.T01 | MTR_6g464120 | 32.110 | 218 | 131 | 5 | 8 | 212 | 107 | 320 | 2.59e-30 | 117 |
| MsG0580024638.01.T01 | MTR_7g107040 | 31.556 | 225 | 137 | 10 | 8 | 217 | 94 | 316 | 1.65e-23 | 96.3 |
| MsG0580024638.01.T01 | MTR_7g406880 | 32.836 | 201 | 114 | 7 | 9 | 188 | 115 | 315 | 3.18e-21 | 90.5 |
| MsG0580024638.01.T01 | MTR_0007s0480 | 32.911 | 158 | 87 | 6 | 66 | 205 | 2 | 158 | 2.54e-19 | 82.0 |
| MsG0580024638.01.T01 | MTR_4g050140 | 26.667 | 210 | 139 | 5 | 8 | 204 | 93 | 300 | 5.20e-19 | 84.0 |
| MsG0580024638.01.T01 | MTR_1g111280 | 29.358 | 218 | 131 | 9 | 11 | 209 | 116 | 329 | 7.43e-19 | 84.0 |
| MsG0580024638.01.T01 | MTR_3g012440 | 29.677 | 155 | 100 | 2 | 9 | 154 | 114 | 268 | 2.08e-17 | 79.7 |
| MsG0580024638.01.T01 | MTR_6g065120 | 29.319 | 191 | 116 | 6 | 8 | 187 | 122 | 304 | 1.27e-16 | 77.8 |
| MsG0580024638.01.T01 | MTR_6g065270 | 28.796 | 191 | 117 | 6 | 8 | 187 | 122 | 304 | 1.47e-16 | 77.4 |
| MsG0580024638.01.T01 | MTR_6g065400 | 29.319 | 191 | 116 | 6 | 8 | 187 | 120 | 302 | 1.17e-15 | 75.1 |
| MsG0580024638.01.T01 | MTR_6g065110 | 28.662 | 157 | 96 | 4 | 8 | 156 | 121 | 269 | 1.51e-15 | 74.7 |
| MsG0580024638.01.T01 | MTR_1g089310 | 34.194 | 155 | 86 | 5 | 8 | 154 | 146 | 292 | 1.59e-15 | 74.7 |
| MsG0580024638.01.T01 | MTR_1g089310 | 34.194 | 155 | 86 | 5 | 8 | 154 | 130 | 276 | 1.61e-15 | 74.7 |
| MsG0580024638.01.T01 | MTR_4g086510 | 29.885 | 174 | 110 | 5 | 18 | 183 | 110 | 279 | 6.54e-15 | 72.8 |
| MsG0580024638.01.T01 | MTR_1g082210 | 31.156 | 199 | 120 | 5 | 8 | 196 | 130 | 321 | 1.07e-14 | 72.4 |
| MsG0580024638.01.T01 | MTR_6g065430 | 27.411 | 197 | 112 | 7 | 8 | 187 | 114 | 296 | 4.28e-14 | 70.5 |
| MsG0580024638.01.T01 | MTR_7g093950 | 32.143 | 168 | 94 | 7 | 8 | 163 | 131 | 290 | 4.50e-14 | 70.5 |
| MsG0580024638.01.T01 | MTR_7g056207 | 27.922 | 154 | 102 | 3 | 9 | 157 | 133 | 282 | 6.61e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024638.01.T01 | AT2G45610 | 49.327 | 223 | 97 | 5 | 8 | 217 | 104 | 323 | 6.17e-66 | 206 |
| MsG0580024638.01.T01 | AT2G45600 | 36.681 | 229 | 126 | 6 | 6 | 217 | 89 | 315 | 6.99e-45 | 152 |
| MsG0580024638.01.T01 | AT5G62180 | 33.645 | 214 | 119 | 7 | 8 | 205 | 105 | 311 | 4.98e-31 | 116 |
| MsG0580024638.01.T01 | AT5G06570 | 29.703 | 202 | 127 | 6 | 8 | 197 | 116 | 314 | 5.78e-21 | 89.7 |
| MsG0580024638.01.T01 | AT5G06570 | 29.703 | 202 | 127 | 6 | 8 | 197 | 116 | 314 | 5.78e-21 | 89.7 |
| MsG0580024638.01.T01 | AT5G06570 | 29.703 | 202 | 127 | 6 | 8 | 197 | 101 | 299 | 6.10e-21 | 89.7 |
| MsG0580024638.01.T01 | AT5G06570 | 29.703 | 202 | 127 | 6 | 8 | 197 | 101 | 299 | 6.10e-21 | 89.7 |
| MsG0580024638.01.T01 | AT5G16080 | 32.667 | 150 | 86 | 5 | 9 | 144 | 118 | 266 | 1.26e-15 | 75.1 |
| MsG0580024638.01.T01 | AT1G68620 | 35.036 | 137 | 75 | 5 | 18 | 144 | 124 | 256 | 6.52e-14 | 70.1 |
| MsG0580024638.01.T01 | AT3G63010 | 30.688 | 189 | 113 | 6 | 8 | 187 | 131 | 310 | 8.89e-14 | 69.7 |
| MsG0580024638.01.T01 | AT1G19190 | 31.148 | 122 | 80 | 2 | 18 | 135 | 107 | 228 | 1.40e-12 | 66.2 |
| MsG0580024638.01.T01 | AT5G23530 | 27.586 | 203 | 123 | 6 | 8 | 196 | 112 | 304 | 1.54e-12 | 66.2 |
Find 72 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGAAAATGTCAAGAAATT+AGG | 0.125161 | 5:-7515163 | MsG0580024638.01.T01:CDS |
| CCATCGAGGTGTTATCTTTA+TGG | 0.162050 | 5:-7516017 | MsG0580024638.01.T01:CDS |
| TGGAAAATGTCAAGAAATTA+GGG | 0.314810 | 5:-7515162 | MsG0580024638.01.T01:CDS |
| CTGGTCCGTTGCAAACCTTT+TGG | 0.333314 | 5:+7515288 | None:intergenic |
| AATTAGGGAGGTGTCTTGTA+TGG | 0.364724 | 5:-7515147 | MsG0580024638.01.T01:CDS |
| AATGGCAAAAGGACCACATT+TGG | 0.377354 | 5:-7515182 | MsG0580024638.01.T01:CDS |
| ATATGGACTTAGAGCCTCTA+AGG | 0.394329 | 5:-7515944 | MsG0580024638.01.T01:CDS |
| GGCCATTCAGATTGGAGATA+TGG | 0.409202 | 5:-7515961 | MsG0580024638.01.T01:CDS |
| TGGGCCATGGCTTTGCCTAC+GGG | 0.409884 | 5:-7515235 | MsG0580024638.01.T01:CDS |
| ACAAGGCCACTAATCCTTAG+AGG | 0.416771 | 5:+7515930 | None:intergenic |
| GACTTTGCCCTTACCAGTGT+TGG | 0.417668 | 5:-7515266 | MsG0580024638.01.T01:CDS |
| TTCAATACGGCCATTCAGAT+TGG | 0.423842 | 5:-7515969 | MsG0580024638.01.T01:CDS |
| GTGGGCCATGGCTTTGCCTA+CGG | 0.428532 | 5:-7515236 | MsG0580024638.01.T01:CDS |
| ATAACCGCACTAGCTCTAGT+AGG | 0.431582 | 5:+7515004 | None:intergenic |
| TATCTTTATGGATGTGGTTG+TGG | 0.434607 | 5:-7516005 | MsG0580024638.01.T01:CDS |
| TGTCTCTGTCGCCTTTCGTT+GGG | 0.438448 | 5:-7516153 | MsG0580024638.01.T01:CDS |
| CTCAACCATTGCTCTCCATC+AGG | 0.438600 | 5:+7516053 | None:intergenic |
| TCGAGCATCTTGATATTGTC+CGG | 0.444661 | 5:+7516112 | None:intergenic |
| TTGTCTCTGTCGCCTTTCGT+TGG | 0.451494 | 5:-7516154 | MsG0580024638.01.T01:CDS |
| CCATTGGATTGCAATACCTA+TGG | 0.454707 | 5:+7515200 | None:intergenic |
| GGTGTCTTGTATGGGTATGG+TGG | 0.457281 | 5:-7515138 | MsG0580024638.01.T01:CDS |
| TGAAGCTAGGTTTGATCCTG+TGG | 0.468258 | 5:-7515053 | MsG0580024638.01.T01:CDS |
| GGGGTTCCACAATATTGATA+TGG | 0.477353 | 5:-7515032 | MsG0580024638.01.T01:CDS |
| GCGACAGAGACAACAATACT+AGG | 0.481339 | 5:+7516164 | None:intergenic |
| GAGCAATGGTTGAGAGACTA+TGG | 0.482302 | 5:-7516044 | MsG0580024638.01.T01:CDS |
| CATCATGTCCAACACTGGTA+AGG | 0.489057 | 5:+7515258 | None:intergenic |
| AGGTGTTATCTTTATGGATG+TGG | 0.490354 | 5:-7516011 | MsG0580024638.01.T01:CDS |
| GTTGGTCAAATGTGGGGTCC+AGG | 0.492083 | 5:-7515077 | MsG0580024638.01.T01:CDS |
| GGAGGTGTCTTGTATGGGTA+TGG | 0.498044 | 5:-7515141 | MsG0580024638.01.T01:CDS |
| GAAGCTAGGTTTGATCCTGT+GGG | 0.500369 | 5:-7515052 | MsG0580024638.01.T01:CDS |
| TTCGTTGGGCGCCAGAGACT+AGG | 0.511728 | 5:-7516139 | MsG0580024638.01.T01:CDS |
| TGACCATGTTGGTCAAATGT+GGG | 0.525547 | 5:-7515084 | MsG0580024638.01.T01:CDS |
| TATTGCAATCCAATGGCAAA+AGG | 0.529808 | 5:-7515193 | MsG0580024638.01.T01:CDS |
| ACACTGGTAAGGGCAAAGTC+TGG | 0.531768 | 5:+7515269 | None:intergenic |
| GTGACCATGTTGGTCAAATG+TGG | 0.535257 | 5:-7515085 | MsG0580024638.01.T01:CDS |
| TTCTTCCAAAAGGTTTGCAA+CGG | 0.535946 | 5:-7515293 | MsG0580024638.01.T01:CDS |
| AATCAAATGACGAATCCTGA+TGG | 0.539467 | 5:-7516068 | MsG0580024638.01.T01:CDS |
| GTCCATATCTCCAATCTGAA+TGG | 0.540037 | 5:+7515959 | None:intergenic |
| TGTCCGGGTAACCTAGTCTC+TGG | 0.551902 | 5:+7516128 | None:intergenic |
| TACCAGTGTTGGACATGATG+TGG | 0.554021 | 5:-7515255 | MsG0580024638.01.T01:CDS |
| GTTGGACATGATGTGGGCCA+TGG | 0.554890 | 5:-7515248 | MsG0580024638.01.T01:CDS |
| GGTCAACCATATCAATATTG+TGG | 0.557103 | 5:+7515026 | None:intergenic |
| GTGGGGTCCAGGTTGAAGCT+AGG | 0.557168 | 5:-7515066 | MsG0580024638.01.T01:CDS |
| CATAAAGATAACACCTCGAT+GGG | 0.558427 | 5:+7516018 | None:intergenic |
| TGCAAACATTGTGTTCAATA+CGG | 0.560159 | 5:-7515982 | MsG0580024638.01.T01:CDS |
| GTGCGGTTATAAATATTGCA+AGG | 0.561146 | 5:-7514991 | MsG0580024638.01.T01:CDS |
| ATTAGGGAGGTGTCTTGTAT+GGG | 0.561899 | 5:-7515146 | MsG0580024638.01.T01:CDS |
| AGTCTCTGGCGCCCAACGAA+AGG | 0.566700 | 5:+7516142 | None:intergenic |
| CGAGCATCTTGATATTGTCC+GGG | 0.569073 | 5:+7516113 | None:intergenic |
| TAACCGCACTAGCTCTAGTA+GGG | 0.577127 | 5:+7515005 | None:intergenic |
| ATCATGTCCAACACTGGTAA+GGG | 0.578520 | 5:+7515259 | None:intergenic |
| TCAATATTGTGGAACCCCAC+AGG | 0.582193 | 5:+7515037 | None:intergenic |
| CCATAAAGATAACACCTCGA+TGG | 0.586600 | 5:+7516017 | None:intergenic |
| GCCCACATCATGTCCAACAC+TGG | 0.603571 | 5:+7515253 | None:intergenic |
| GCGCCAGAGACTAGGTTACC+CGG | 0.604483 | 5:-7516131 | MsG0580024638.01.T01:CDS |
| TGCGGTTATAAATATTGCAA+GGG | 0.608893 | 5:-7514990 | MsG0580024638.01.T01:CDS |
| GGGCCATGGCTTTGCCTACG+GGG | 0.610243 | 5:-7515234 | MsG0580024638.01.T01:CDS |
| TGGGTATGGTGGAGACATCA+TGG | 0.610876 | 5:-7515127 | MsG0580024638.01.T01:CDS |
| CGGGGACAAATCGTGACCAT+AGG | 0.613124 | 5:-7515216 | MsG0580024638.01.T01:CDS |
| AAGCTAGGTTTGATCCTGTG+GGG | 0.615240 | 5:-7515051 | MsG0580024638.01.T01:CDS |
| CCATAGGTATTGCAATCCAA+TGG | 0.617062 | 5:-7515200 | MsG0580024638.01.T01:CDS |
| GATCAAACCTAGCTTCAACC+TGG | 0.619274 | 5:+7515059 | None:intergenic |
| ACCAGTGTTGGACATGATGT+GGG | 0.635087 | 5:-7515254 | MsG0580024638.01.T01:CDS |
| ACAAGAATTTGTGACCATGT+TGG | 0.638031 | 5:-7515095 | MsG0580024638.01.T01:CDS |
| TGTCCCCGTAGGCAAAGCCA+TGG | 0.658805 | 5:+7515231 | None:intergenic |
| GACCATGTTGGTCAAATGTG+GGG | 0.660571 | 5:-7515083 | MsG0580024638.01.T01:CDS |
| TGACCCTACTAGAGCTAGTG+CGG | 0.675155 | 5:-7515008 | MsG0580024638.01.T01:CDS |
| TGGTCACGATTTGTCCCCGT+AGG | 0.679424 | 5:+7515220 | None:intergenic |
| AAAATGTCAAGAAATTAGGG+AGG | 0.680447 | 5:-7515159 | MsG0580024638.01.T01:CDS |
| CGAATCCTGATGGAGAGCAA+TGG | 0.687815 | 5:-7516058 | MsG0580024638.01.T01:CDS |
| GACCCCACATTTGACCAACA+TGG | 0.691227 | 5:+7515081 | None:intergenic |
| GAGACTATGGTGACCCATCG+AGG | 0.705564 | 5:-7516031 | MsG0580024638.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTTCAAACATCTATA+AGG | + | Chr5:7515716-7515735 | None:intergenic | 15.0% |
| !!! | ATTTCATTTTAGTTTTATAG+AGG | - | Chr5:7515654-7515673 | MsG0580024638.01.T01:intron | 15.0% |
| !! | AAAAATTACTCATTATCATG+TGG | - | Chr5:7515797-7515816 | MsG0580024638.01.T01:intron | 20.0% |
| !!! | AAAATATATCTTGACTTGTT+TGG | - | Chr5:7515407-7515426 | MsG0580024638.01.T01:intron | 20.0% |
| !!! | AAGATTCGAACATTTTTTTA+TGG | + | Chr5:7514974-7514993 | None:intergenic | 20.0% |
| !!! | AGATTCGAACATTTTTTTAT+GGG | + | Chr5:7514973-7514992 | None:intergenic | 20.0% |
| ! | AATTTCAAACATCTATAAGG+TGG | + | Chr5:7515713-7515732 | None:intergenic | 25.0% |
| ! | TGGAAAATGTCAAGAAATTA+GGG | - | Chr5:7516008-7516027 | MsG0580024638.01.T01:CDS | 25.0% |
| ! | TTGGAAAATGTCAAGAAATT+AGG | - | Chr5:7516007-7516026 | MsG0580024638.01.T01:CDS | 25.0% |
| !! | AAATTATGAACCTTATTTCG+AGG | + | Chr5:7515304-7515323 | None:intergenic | 25.0% |
| !! | TTTTTCTTTCTTCTTCCAAA+AGG | - | Chr5:7515867-7515886 | MsG0580024638.01.T01:intron | 25.0% |
| AAAATGTCAAGAAATTAGGG+AGG | - | Chr5:7516011-7516030 | MsG0580024638.01.T01:CDS | 30.0% | |
| GAGAATAACACATATCTCTT+TGG | - | Chr5:7515377-7515396 | MsG0580024638.01.T01:intron | 30.0% | |
| GTCTTGATTCAAAGAGATTA+AGG | + | Chr5:7515777-7515796 | None:intergenic | 30.0% | |
| GTGGTTTCTAATACAATAAG+AGG | + | Chr5:7515694-7515713 | None:intergenic | 30.0% | |
| TGCAAACATTGTGTTCAATA+CGG | - | Chr5:7515188-7515207 | MsG0580024638.01.T01:CDS | 30.0% | |
| TGCGGTTATAAATATTGCAA+GGG | - | Chr5:7516180-7516199 | MsG0580024638.01.T01:CDS | 30.0% | |
| TTGATTCAAAGAGATTAAGG+TGG | + | Chr5:7515774-7515793 | None:intergenic | 30.0% | |
| ! | ATGAATCAACCTATGTTTTC+TGG | - | Chr5:7515264-7515283 | MsG0580024638.01.T01:CDS | 30.0% |
| ! | GTAAGTTCCTGCTATAATTT+TGG | - | Chr5:7515517-7515536 | MsG0580024638.01.T01:intron | 30.0% |
| ! | TAAATGATGATGCCTATGTT+TGG | + | Chr5:7515568-7515587 | None:intergenic | 30.0% |
| ! | TTCTTGACATTTTCCAAATG+TGG | + | Chr5:7516004-7516023 | None:intergenic | 30.0% |
| !! | ACATAGGTTGATTCATAACA+AGG | + | Chr5:7515260-7515279 | None:intergenic | 30.0% |
| !!! | TTTTAAAGCCAAACCAACAT+TGG | - | Chr5:7515731-7515750 | MsG0580024638.01.T01:intron | 30.0% |
| AATCAAATGACGAATCCTGA+TGG | - | Chr5:7515102-7515121 | MsG0580024638.01.T01:CDS | 35.0% | |
| ACAAGAATTTGTGACCATGT+TGG | - | Chr5:7516075-7516094 | MsG0580024638.01.T01:CDS | 35.0% | |
| CATAAAGATAACACCTCGAT+GGG | + | Chr5:7515155-7515174 | None:intergenic | 35.0% | |
| CATCAAGCCAAAATTATAGC+AGG | + | Chr5:7515527-7515546 | None:intergenic | 35.0% | |
| GAGAAATCAAGAGACAAATG+AGG | + | Chr5:7515611-7515630 | None:intergenic | 35.0% | |
| GGTCAACCATATCAATATTG+TGG | + | Chr5:7516147-7516166 | None:intergenic | 35.0% | |
| GTGCGGTTATAAATATTGCA+AGG | - | Chr5:7516179-7516198 | MsG0580024638.01.T01:CDS | 35.0% | |
| TATCTTTATGGATGTGGTTG+TGG | - | Chr5:7515165-7515184 | MsG0580024638.01.T01:CDS | 35.0% | |
| TATTGCAATCCAATGGCAAA+AGG | - | Chr5:7515977-7515996 | MsG0580024638.01.T01:CDS | 35.0% | |
| TTCTTCCAAAAGGTTTGCAA+CGG | - | Chr5:7515877-7515896 | MsG0580024638.01.T01:intron | 35.0% | |
| ! | AGGTGTTATCTTTATGGATG+TGG | - | Chr5:7515159-7515178 | MsG0580024638.01.T01:CDS | 35.0% |
| ! | CTTTTCTCTCCAGAAAACAT+AGG | + | Chr5:7515276-7515295 | None:intergenic | 35.0% |
| ! | TTGTTGATCCAATGTTGGTT+TGG | + | Chr5:7515742-7515761 | None:intergenic | 35.0% |
| !! | CTATGTTTTCTGGAGAGAAA+AGG | - | Chr5:7515274-7515293 | MsG0580024638.01.T01:CDS | 35.0% |
| !!! | AATTTTGGCTTGATGTGGAA+TGG | - | Chr5:7515532-7515551 | MsG0580024638.01.T01:intron | 35.0% |
| !!! | GCTATAATTTTGGCTTGATG+TGG | - | Chr5:7515527-7515546 | MsG0580024638.01.T01:intron | 35.0% |
| AATGGCAAAAGGACCACATT+TGG | - | Chr5:7515988-7516007 | MsG0580024638.01.T01:CDS | 40.0% | |
| ATATGGACTTAGAGCCTCTA+AGG | - | Chr5:7515226-7515245 | MsG0580024638.01.T01:CDS | 40.0% | |
| ATCATGTCCAACACTGGTAA+GGG | + | Chr5:7515914-7515933 | None:intergenic | 40.0% | |
| CCATAAAGATAACACCTCGA+TGG | + | Chr5:7515156-7515175 | None:intergenic | 40.0% | |
| CCATTGGATTGCAATACCTA+TGG | + | Chr5:7515973-7515992 | None:intergenic | 40.0% | |
| GGGGTTCCACAATATTGATA+TGG | - | Chr5:7516138-7516157 | MsG0580024638.01.T01:CDS | 40.0% | |
| GTCCATATCTCCAATCTGAA+TGG | + | Chr5:7515214-7515233 | None:intergenic | 40.0% | |
| TCGAGCATCTTGATATTGTC+CGG | + | Chr5:7515061-7515080 | None:intergenic | 40.0% | |
| TGACCATGTTGGTCAAATGT+GGG | - | Chr5:7516086-7516105 | MsG0580024638.01.T01:CDS | 40.0% | |
| TTCAATACGGCCATTCAGAT+TGG | - | Chr5:7515201-7515220 | MsG0580024638.01.T01:CDS | 40.0% | |
| ! | AAATGTGGTCCTTTTGCCAT+TGG | + | Chr5:7515989-7516008 | None:intergenic | 40.0% |
| ! | ACAAGTTTTCTCGTGTCTCA+AGG | - | Chr5:7515442-7515461 | MsG0580024638.01.T01:intron | 40.0% |
| ! | CCATAGGTATTGCAATCCAA+TGG | - | Chr5:7515970-7515989 | MsG0580024638.01.T01:CDS | 40.0% |
| ! | CCATCGAGGTGTTATCTTTA+TGG | - | Chr5:7515153-7515172 | MsG0580024638.01.T01:CDS | 40.0% |
| ! | TTAGAGCCTCTAAGGATTAG+TGG | - | Chr5:7515234-7515253 | MsG0580024638.01.T01:CDS | 40.0% |
| !! | AATTAGGGAGGTGTCTTGTA+TGG | - | Chr5:7516023-7516042 | MsG0580024638.01.T01:CDS | 40.0% |
| !! | ATTAGGGAGGTGTCTTGTAT+GGG | - | Chr5:7516024-7516043 | MsG0580024638.01.T01:CDS | 40.0% |
| !! | GAGTCTTGTTGATCCAATGT+TGG | + | Chr5:7515747-7515766 | None:intergenic | 40.0% |
| !! | GTTTTCTGGAGAGAAAAGGA+CGG | - | Chr5:7515278-7515297 | MsG0580024638.01.T01:CDS | 40.0% |
| !!! | ATGCTCGAGATGCTATTTTG+TGG | - | Chr5:7515073-7515092 | MsG0580024638.01.T01:CDS | 40.0% |
| !!! | TGCTCGAGATGCTATTTTGT+GGG | - | Chr5:7515074-7515093 | MsG0580024638.01.T01:CDS | 40.0% |
| AAAAGGACGGCCTCGAAATA+AGG | - | Chr5:7515291-7515310 | MsG0580024638.01.T01:CDS | 45.0% | |
| AAGCTAGGTTTGATCCTGTG+GGG | - | Chr5:7516119-7516138 | MsG0580024638.01.T01:CDS | 45.0% | |
| ACAAGGCCACTAATCCTTAG+AGG | + | Chr5:7515243-7515262 | None:intergenic | 45.0% | |
| CATCATGTCCAACACTGGTA+AGG | + | Chr5:7515915-7515934 | None:intergenic | 45.0% | |
| CGAGCATCTTGATATTGTCC+GGG | + | Chr5:7515060-7515079 | None:intergenic | 45.0% | |
| GAAGCTAGGTTTGATCCTGT+GGG | - | Chr5:7516118-7516137 | MsG0580024638.01.T01:CDS | 45.0% | |
| GACCATGTTGGTCAAATGTG+GGG | - | Chr5:7516087-7516106 | MsG0580024638.01.T01:CDS | 45.0% | |
| GAGCAATGGTTGAGAGACTA+TGG | - | Chr5:7515126-7515145 | MsG0580024638.01.T01:CDS | 45.0% | |
| GATCAAACCTAGCTTCAACC+TGG | + | Chr5:7516114-7516133 | None:intergenic | 45.0% | |
| GCGACAGAGACAACAATACT+AGG | + | Chr5:7515009-7515028 | None:intergenic | 45.0% | |
| GGCCATTCAGATTGGAGATA+TGG | - | Chr5:7515209-7515228 | MsG0580024638.01.T01:CDS | 45.0% | |
| GTGACCATGTTGGTCAAATG+TGG | - | Chr5:7516085-7516104 | MsG0580024638.01.T01:CDS | 45.0% | |
| TCAATATTGTGGAACCCCAC+AGG | + | Chr5:7516136-7516155 | None:intergenic | 45.0% | |
| TGAAGCTAGGTTTGATCCTG+TGG | - | Chr5:7516117-7516136 | MsG0580024638.01.T01:CDS | 45.0% | |
| ! | ACCAGTGTTGGACATGATGT+GGG | - | Chr5:7515916-7515935 | MsG0580024638.01.T01:intron | 45.0% |
| ! | TACCAGTGTTGGACATGATG+TGG | - | Chr5:7515915-7515934 | MsG0580024638.01.T01:intron | 45.0% |
| !! | ATAACCGCACTAGCTCTAGT+AGG | + | Chr5:7516169-7516188 | None:intergenic | 45.0% |
| !! | TAACCGCACTAGCTCTAGTA+GGG | + | Chr5:7516168-7516187 | None:intergenic | 45.0% |
| !! | TGACTTGTTTGGATGTGCGA+TGG | - | Chr5:7515418-7515437 | MsG0580024638.01.T01:intron | 45.0% |
| ACACTGGTAAGGGCAAAGTC+TGG | + | Chr5:7515904-7515923 | None:intergenic | 50.0% | |
| CGAATCCTGATGGAGAGCAA+TGG | - | Chr5:7515112-7515131 | MsG0580024638.01.T01:CDS | 50.0% | |
| CTCAACCATTGCTCTCCATC+AGG | + | Chr5:7515120-7515139 | None:intergenic | 50.0% | |
| GACCCCACATTTGACCAACA+TGG | + | Chr5:7516092-7516111 | None:intergenic | 50.0% | |
| GACTTTGCCCTTACCAGTGT+TGG | - | Chr5:7515904-7515923 | MsG0580024638.01.T01:intron | 50.0% | |
| GGCACTGCACAACCAAACAT+AGG | - | Chr5:7515553-7515572 | MsG0580024638.01.T01:intron | 50.0% | |
| GGTGTCTTGTATGGGTATGG+TGG | - | Chr5:7516032-7516051 | MsG0580024638.01.T01:CDS | 50.0% | |
| TGACCCTACTAGAGCTAGTG+CGG | - | Chr5:7516162-7516181 | MsG0580024638.01.T01:CDS | 50.0% | |
| TGTCTCTGTCGCCTTTCGTT+GGG | - | Chr5:7515017-7515036 | MsG0580024638.01.T01:CDS | 50.0% | |
| TTGTCTCTGTCGCCTTTCGT+TGG | - | Chr5:7515016-7515035 | MsG0580024638.01.T01:CDS | 50.0% | |
| ! | CTGGTCCGTTGCAAACCTTT+TGG | + | Chr5:7515885-7515904 | None:intergenic | 50.0% |
| ! | TGGGTATGGTGGAGACATCA+TGG | - | Chr5:7516043-7516062 | MsG0580024638.01.T01:CDS | 50.0% |
| !! | GGAGGTGTCTTGTATGGGTA+TGG | - | Chr5:7516029-7516048 | MsG0580024638.01.T01:CDS | 50.0% |
| CGGGGACAAATCGTGACCAT+AGG | - | Chr5:7515954-7515973 | MsG0580024638.01.T01:CDS | 55.0% | |
| GAGACTATGGTGACCCATCG+AGG | - | Chr5:7515139-7515158 | MsG0580024638.01.T01:CDS | 55.0% | |
| GCCCACATCATGTCCAACAC+TGG | + | Chr5:7515920-7515939 | None:intergenic | 55.0% | |
| GTTGGACATGATGTGGGCCA+TGG | - | Chr5:7515922-7515941 | MsG0580024638.01.T01:intron | 55.0% | |
| GTTGGTCAAATGTGGGGTCC+AGG | - | Chr5:7516093-7516112 | MsG0580024638.01.T01:CDS | 55.0% | |
| TGGTCACGATTTGTCCCCGT+AGG | + | Chr5:7515953-7515972 | None:intergenic | 55.0% | |
| TGTCCGGGTAACCTAGTCTC+TGG | + | Chr5:7515045-7515064 | None:intergenic | 55.0% | |
| AGTCTCTGGCGCCCAACGAA+AGG | + | Chr5:7515031-7515050 | None:intergenic | 60.0% | |
| GCGCCAGAGACTAGGTTACC+CGG | - | Chr5:7515039-7515058 | MsG0580024638.01.T01:CDS | 60.0% | |
| TGTCCCCGTAGGCAAAGCCA+TGG | + | Chr5:7515942-7515961 | None:intergenic | 60.0% | |
| TTCGTTGGGCGCCAGAGACT+AGG | - | Chr5:7515031-7515050 | MsG0580024638.01.T01:CDS | 60.0% | |
| ! | GTGGGCCATGGCTTTGCCTA+CGG | - | Chr5:7515934-7515953 | MsG0580024638.01.T01:intron | 60.0% |
| ! | GTGGGGTCCAGGTTGAAGCT+AGG | - | Chr5:7516104-7516123 | MsG0580024638.01.T01:CDS | 60.0% |
| ! | TGGGCCATGGCTTTGCCTAC+GGG | - | Chr5:7515935-7515954 | MsG0580024638.01.T01:intron | 60.0% |
| ! | GGGCCATGGCTTTGCCTACG+GGG | - | Chr5:7515936-7515955 | MsG0580024638.01.T01:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 7514961 | 7516231 | 7514961 | ID=MsG0580024638.01;Name=MsG0580024638.01 |
| Chr5 | mRNA | 7514961 | 7516231 | 7514961 | ID=MsG0580024638.01.T01;Parent=MsG0580024638.01;Name=MsG0580024638.01.T01;_AED=0.24;_eAED=0.28;_QI=0|0|0|1|0|0|2|0|223 |
| Chr5 | exon | 7515940 | 7516231 | 7515940 | ID=MsG0580024638.01.T01:exon:1824;Parent=MsG0580024638.01.T01 |
| Chr5 | exon | 7514961 | 7515340 | 7514961 | ID=MsG0580024638.01.T01:exon:1823;Parent=MsG0580024638.01.T01 |
| Chr5 | CDS | 7515940 | 7516231 | 7515940 | ID=MsG0580024638.01.T01:cds;Parent=MsG0580024638.01.T01 |
| Chr5 | CDS | 7514961 | 7515340 | 7514961 | ID=MsG0580024638.01.T01:cds;Parent=MsG0580024638.01.T01 |
| Gene Sequence |
| Protein sequence |
