Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033953.01.T01 | XP_013452513.1 | 96.615 | 325 | 11 | 0 | 1 | 325 | 1 | 325 | 0 | 649 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033953.01.T01 | Q0ZPV7 | 54.167 | 312 | 137 | 2 | 15 | 324 | 20 | 327 | 1.79E-115 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033953.01.T01 | A0A072UAU3 | 96.615 | 325 | 11 | 0 | 1 | 325 | 1 | 325 | 0.0 | 649 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048027.01 | MsG0680033953.01 | 0.806298 | 8.805640e-50 | 4.762365e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0880043427.01 | MsG0680033953.01 | PPI |
| MsG0580024638.01 | MsG0680033953.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033953.01.T01 | MTR_6g464280 | 96.615 | 325 | 11 | 0 | 1 | 325 | 1 | 325 | 0.0 | 649 |
| MsG0680033953.01.T01 | MTR_6g464320 | 84.848 | 330 | 49 | 1 | 1 | 329 | 1 | 330 | 0.0 | 580 |
| MsG0680033953.01.T01 | MTR_6g464510 | 68.502 | 327 | 96 | 5 | 2 | 325 | 5 | 327 | 1.19e-161 | 454 |
| MsG0680033953.01.T01 | MTR_1g102160 | 53.012 | 332 | 145 | 5 | 1 | 326 | 1 | 327 | 2.30e-116 | 339 |
| MsG0680033953.01.T01 | MTR_6g464120 | 54.777 | 314 | 136 | 5 | 7 | 319 | 12 | 320 | 1.57e-110 | 331 |
| MsG0680033953.01.T01 | MTR_1g102170 | 51.592 | 314 | 143 | 3 | 12 | 323 | 31 | 337 | 1.53e-108 | 320 |
| MsG0680033953.01.T01 | MTR_8g035520 | 49.102 | 334 | 154 | 5 | 2 | 328 | 4 | 328 | 3.17e-103 | 306 |
| MsG0680033953.01.T01 | MTR_0007s0520 | 50.325 | 308 | 145 | 4 | 22 | 326 | 24 | 326 | 3.28e-100 | 298 |
| MsG0680033953.01.T01 | MTR_8g035540 | 48.160 | 326 | 149 | 6 | 12 | 326 | 2 | 318 | 3.03e-98 | 293 |
| MsG0680033953.01.T01 | MTR_8g035500 | 37.188 | 320 | 187 | 5 | 12 | 324 | 5 | 317 | 4.04e-74 | 231 |
| MsG0680033953.01.T01 | MTR_6g065430 | 40.161 | 249 | 137 | 5 | 46 | 293 | 58 | 295 | 1.07e-53 | 179 |
| MsG0680033953.01.T01 | MTR_7g406880 | 39.350 | 277 | 144 | 9 | 34 | 293 | 44 | 313 | 5.48e-53 | 178 |
| MsG0680033953.01.T01 | MTR_6g065400 | 36.129 | 310 | 183 | 6 | 24 | 325 | 32 | 334 | 1.52e-52 | 176 |
| MsG0680033953.01.T01 | MTR_0007s0480 | 52.326 | 172 | 78 | 3 | 158 | 326 | 2 | 172 | 1.56e-52 | 171 |
| MsG0680033953.01.T01 | MTR_6g065120 | 36.334 | 311 | 182 | 6 | 24 | 325 | 33 | 336 | 6.29e-52 | 175 |
| MsG0680033953.01.T01 | MTR_1g111280 | 36.364 | 319 | 169 | 8 | 31 | 329 | 42 | 346 | 1.60e-51 | 174 |
| MsG0680033953.01.T01 | MTR_6g065110 | 35.099 | 302 | 184 | 5 | 30 | 326 | 42 | 336 | 3.81e-50 | 170 |
| MsG0680033953.01.T01 | MTR_6g065370 | 35.161 | 310 | 186 | 6 | 24 | 325 | 32 | 334 | 4.29e-50 | 170 |
| MsG0680033953.01.T01 | MTR_6g065270 | 36.331 | 278 | 159 | 5 | 24 | 290 | 30 | 300 | 1.51e-48 | 166 |
| MsG0680033953.01.T01 | MTR_4g050140 | 32.500 | 320 | 192 | 10 | 19 | 327 | 12 | 318 | 5.76e-42 | 148 |
| MsG0680033953.01.T01 | MTR_6g065340 | 34.672 | 274 | 149 | 6 | 24 | 290 | 43 | 293 | 6.71e-42 | 148 |
| MsG0680033953.01.T01 | MTR_4g086510 | 33.779 | 299 | 172 | 9 | 38 | 325 | 35 | 318 | 1.47e-41 | 147 |
| MsG0680033953.01.T01 | MTR_7g107040 | 36.187 | 257 | 143 | 6 | 80 | 324 | 69 | 316 | 2.61e-41 | 146 |
| MsG0680033953.01.T01 | MTR_1g012430 | 34.496 | 258 | 148 | 7 | 38 | 290 | 29 | 270 | 4.56e-40 | 143 |
| MsG0680033953.01.T01 | MTR_7g056207 | 32.660 | 297 | 178 | 9 | 38 | 325 | 67 | 350 | 5.38e-39 | 141 |
| MsG0680033953.01.T01 | MTR_4g086480 | 33.667 | 300 | 170 | 11 | 38 | 326 | 39 | 320 | 3.77e-36 | 133 |
| MsG0680033953.01.T01 | MTR_4g086470 | 34.496 | 258 | 148 | 8 | 38 | 290 | 38 | 279 | 1.71e-34 | 128 |
| MsG0680033953.01.T01 | MTR_1g089310 | 38.009 | 221 | 117 | 6 | 78 | 293 | 103 | 308 | 3.86e-34 | 128 |
| MsG0680033953.01.T01 | MTR_1g089310 | 38.009 | 221 | 117 | 6 | 78 | 293 | 119 | 324 | 5.44e-34 | 128 |
| MsG0680033953.01.T01 | MTR_3g101420 | 31.045 | 335 | 189 | 10 | 8 | 325 | 6 | 315 | 3.82e-33 | 125 |
| MsG0680033953.01.T01 | MTR_7g093950 | 34.156 | 243 | 143 | 5 | 62 | 293 | 78 | 314 | 1.02e-32 | 124 |
| MsG0680033953.01.T01 | MTR_1g082210 | 31.381 | 239 | 135 | 7 | 23 | 244 | 37 | 263 | 1.13e-30 | 119 |
| MsG0680033953.01.T01 | MTR_4g086540 | 29.373 | 303 | 176 | 7 | 27 | 325 | 34 | 302 | 9.60e-30 | 115 |
| MsG0680033953.01.T01 | MTR_3g012440 | 34.225 | 187 | 112 | 3 | 62 | 243 | 74 | 254 | 1.03e-28 | 113 |
| MsG0680033953.01.T01 | MTR_1g105020 | 35.437 | 206 | 119 | 5 | 40 | 237 | 38 | 237 | 3.68e-27 | 108 |
| MsG0680033953.01.T01 | MTR_3g450680 | 29.338 | 317 | 194 | 11 | 24 | 324 | 29 | 331 | 1.68e-26 | 107 |
| MsG0680033953.01.T01 | MTR_8g040860 | 27.586 | 319 | 194 | 12 | 24 | 324 | 29 | 328 | 7.34e-25 | 102 |
| MsG0680033953.01.T01 | MTR_5g005920 | 28.205 | 312 | 181 | 13 | 32 | 324 | 43 | 330 | 2.66e-24 | 101 |
| MsG0680033953.01.T01 | MTR_5g005850 | 27.900 | 319 | 192 | 13 | 26 | 324 | 28 | 328 | 8.38e-24 | 100 |
| MsG0680033953.01.T01 | MTR_6g022710 | 31.053 | 190 | 98 | 1 | 77 | 233 | 157 | 346 | 2.47e-23 | 100 |
| MsG0680033953.01.T01 | MTR_5g005900 | 29.060 | 234 | 139 | 8 | 21 | 237 | 18 | 241 | 1.83e-22 | 96.3 |
| MsG0680033953.01.T01 | MTR_7g051020 | 35.106 | 188 | 103 | 6 | 24 | 201 | 25 | 203 | 2.16e-19 | 87.8 |
| MsG0680033953.01.T01 | MTR_1g104930 | 35.404 | 161 | 89 | 3 | 48 | 201 | 48 | 200 | 7.44e-19 | 86.3 |
| MsG0680033953.01.T01 | MTR_1g104933 | 35.583 | 163 | 86 | 4 | 48 | 201 | 46 | 198 | 1.19e-16 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033953.01.T01 | AT5G62180 | 50.464 | 323 | 156 | 3 | 7 | 326 | 4 | 325 | 6.22e-116 | 338 |
| MsG0680033953.01.T01 | AT2G45600 | 44.277 | 332 | 155 | 6 | 7 | 326 | 4 | 317 | 5.96e-94 | 282 |
| MsG0680033953.01.T01 | AT2G45610 | 40.854 | 328 | 175 | 6 | 8 | 325 | 6 | 324 | 2.07e-79 | 245 |
| MsG0680033953.01.T01 | AT1G68620 | 37.333 | 300 | 171 | 7 | 34 | 328 | 46 | 333 | 9.46e-49 | 166 |
| MsG0680033953.01.T01 | AT5G16080 | 37.175 | 269 | 146 | 7 | 34 | 293 | 51 | 305 | 1.34e-48 | 166 |
| MsG0680033953.01.T01 | AT5G23530 | 34.304 | 309 | 184 | 7 | 21 | 324 | 32 | 326 | 3.43e-46 | 160 |
| MsG0680033953.01.T01 | AT1G19190 | 33.333 | 273 | 161 | 6 | 24 | 290 | 18 | 275 | 4.66e-38 | 138 |
| MsG0680033953.01.T01 | AT1G49640 | 38.788 | 165 | 97 | 3 | 39 | 203 | 34 | 194 | 1.47e-36 | 134 |
| MsG0680033953.01.T01 | AT5G06570 | 34.576 | 295 | 167 | 8 | 46 | 327 | 47 | 328 | 1.04e-35 | 132 |
| MsG0680033953.01.T01 | AT5G06570 | 34.576 | 295 | 167 | 8 | 46 | 327 | 47 | 328 | 1.04e-35 | 132 |
| MsG0680033953.01.T01 | AT5G06570 | 34.576 | 295 | 167 | 8 | 46 | 327 | 62 | 343 | 1.43e-35 | 132 |
| MsG0680033953.01.T01 | AT5G06570 | 34.576 | 295 | 167 | 8 | 46 | 327 | 62 | 343 | 1.43e-35 | 132 |
| MsG0680033953.01.T01 | AT3G48700 | 38.953 | 172 | 97 | 2 | 38 | 201 | 32 | 203 | 2.74e-34 | 128 |
| MsG0680033953.01.T01 | AT5G27320 | 34.615 | 234 | 125 | 7 | 23 | 240 | 37 | 258 | 4.26e-32 | 122 |
| MsG0680033953.01.T01 | AT1G47480 | 28.523 | 298 | 189 | 7 | 38 | 329 | 35 | 314 | 1.30e-31 | 120 |
| MsG0680033953.01.T01 | AT3G63010 | 38.690 | 168 | 95 | 3 | 78 | 244 | 104 | 264 | 3.76e-31 | 120 |
| MsG0680033953.01.T01 | AT1G49660 | 35.465 | 172 | 102 | 3 | 39 | 205 | 33 | 200 | 3.10e-30 | 117 |
| MsG0680033953.01.T01 | AT3G48690 | 35.135 | 185 | 104 | 4 | 27 | 201 | 21 | 199 | 5.14e-30 | 117 |
| MsG0680033953.01.T01 | AT1G49650 | 34.759 | 187 | 111 | 5 | 25 | 205 | 74 | 255 | 1.41e-28 | 114 |
| MsG0680033953.01.T01 | AT3G05120 | 32.245 | 245 | 142 | 6 | 17 | 244 | 27 | 264 | 1.85e-27 | 110 |
| MsG0680033953.01.T01 | AT5G14310 | 31.884 | 207 | 103 | 2 | 76 | 244 | 147 | 353 | 1.89e-25 | 106 |
| MsG0680033953.01.T01 | AT2G03550 | 32.778 | 180 | 108 | 3 | 27 | 201 | 21 | 192 | 2.16e-25 | 103 |
| MsG0680033953.01.T01 | AT3G27320 | 30.290 | 241 | 120 | 7 | 69 | 263 | 123 | 361 | 7.23e-24 | 101 |
| MsG0680033953.01.T01 | AT3G27320 | 30.290 | 241 | 120 | 7 | 69 | 263 | 155 | 393 | 9.38e-24 | 101 |
Find 76 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTCTTCCTTTGATGCTT+AGG | 0.247342 | 6:-77294862 | None:intergenic |
| CTCAATGAAGTTCTTTGCTT+TGG | 0.272954 | 6:+77294899 | None:intergenic |
| ATCATGAGTATTCCAATCTA+AGG | 0.274329 | 6:-77295115 | MsG0680033953.01.T01:CDS |
| GTGGTAGTAGCTTGTTGTTT+AGG | 0.299734 | 6:+77295609 | None:intergenic |
| ATCTCTTCCTTTGATGCTTA+GGG | 0.329295 | 6:-77294861 | None:intergenic |
| TCCATTGGTTGATCGTAATA+AGG | 0.354913 | 6:-77295012 | MsG0680033953.01.T01:CDS |
| ATCATTCCCAACCCTTAGAT+TGG | 0.358675 | 6:+77295103 | None:intergenic |
| TGGAAGCATTGAGTTTGATT+AGG | 0.366794 | 6:-77295421 | MsG0680033953.01.T01:CDS |
| TGTGTTGAACTTTGAGGTAT+TGG | 0.367683 | 6:+77295789 | None:intergenic |
| TGTTTGGTTTGATTGGTTGA+TGG | 0.372466 | 6:+77295676 | None:intergenic |
| TTGGTTGATGGTGAGATCTT+TGG | 0.375462 | 6:+77295688 | None:intergenic |
| GGAATAATCTAAGCCATGTT+TGG | 0.383776 | 6:+77295660 | None:intergenic |
| CTTGAGCCGTTGAAAATTCA+AGG | 0.398268 | 6:-77295275 | MsG0680033953.01.T01:CDS |
| GGTGAAATTGTTGGAGGATA+AGG | 0.406784 | 6:-77294985 | MsG0680033953.01.T01:CDS |
| ATGAAGTTCTTTGCTTTGGA+TGG | 0.409851 | 6:+77294903 | None:intergenic |
| TAAGCCATGTTTGGTTTGAT+TGG | 0.411255 | 6:+77295669 | None:intergenic |
| TTGTGCTGAAATGGCGGATA+CGG | 0.416654 | 6:-77295519 | MsG0680033953.01.T01:CDS |
| TAAGGAGTTGGTGAAATTGT+TGG | 0.420609 | 6:-77294994 | MsG0680033953.01.T01:CDS |
| GTGAGATCTTTGGTTAGAAC+AGG | 0.425005 | 6:+77295698 | None:intergenic |
| GCCGCCGGTAGCCGGTGCTC+CGG | 0.443546 | 6:+77295458 | None:intergenic |
| CATCATATGCCGCCGGTAGC+CGG | 0.451594 | 6:+77295450 | None:intergenic |
| TGGGATTGTGTTGAACTTTG+AGG | 0.458759 | 6:+77295783 | None:intergenic |
| AGGGTGTTGGTGAGTATGAA+TGG | 0.462381 | 6:-77295041 | MsG0680033953.01.T01:CDS |
| GTGAAATTGTTGGAGGATAA+GGG | 0.467275 | 6:-77294984 | MsG0680033953.01.T01:CDS |
| TGATCACGGTCAACACCAAT+TGG | 0.467482 | 6:+77295134 | None:intergenic |
| AGTATTCCAATCTAAGGGTT+GGG | 0.474229 | 6:-77295109 | MsG0680033953.01.T01:CDS |
| CGCACCGGAGCACCGGCTAC+CGG | 0.478223 | 6:-77295462 | MsG0680033953.01.T01:CDS |
| CCACTCATGATCCTTAATCT+TGG | 0.480740 | 6:+77295064 | None:intergenic |
| GGAGGATAAGGGTGTGGAAG+TGG | 0.483734 | 6:-77294973 | MsG0680033953.01.T01:CDS |
| TTTCTAATGGGAAATAGTGC+TGG | 0.493645 | 6:-77295350 | MsG0680033953.01.T01:CDS |
| ATTTCGAGTGAGTGTGTCGT+TGG | 0.495284 | 6:+77295763 | None:intergenic |
| ATCGCCTCGCACCGGAGCAC+CGG | 0.497130 | 6:-77295469 | MsG0680033953.01.T01:CDS |
| TTTCGAGTGAGTGTGTCGTT+GGG | 0.500130 | 6:+77295764 | None:intergenic |
| TAAGGGTGTGGAAGTGGTGA+AGG | 0.501738 | 6:-77294967 | MsG0680033953.01.T01:CDS |
| GTGTGTTAGTGATTTGATGT+GGG | 0.504249 | 6:-77295168 | MsG0680033953.01.T01:CDS |
| TAACTCGGACTCAGTCCTAT+TGG | 0.506530 | 6:+77295220 | None:intergenic |
| TGGGAGTTAGCGTTACCAAT+TGG | 0.507682 | 6:-77295149 | MsG0680033953.01.T01:CDS |
| CCATGAAAGAAAACAATAAG+TGG | 0.534559 | 6:+77295590 | None:intergenic |
| GGTCGAAGCAGTTGTTGCCT+CGG | 0.535521 | 6:-77295498 | MsG0680033953.01.T01:CDS |
| GGTTGATCGTAATAAGGAGT+TGG | 0.536543 | 6:-77295006 | MsG0680033953.01.T01:CDS |
| GGAAGAGAAGTGTCTAATGA+AGG | 0.545290 | 6:+77295719 | None:intergenic |
| TGTGTGTTAGTGATTTGATG+TGG | 0.546036 | 6:-77295169 | MsG0680033953.01.T01:CDS |
| GTATTGGTAAGGATCGTTGA+TGG | 0.548932 | 6:+77295805 | None:intergenic |
| GAGTATTCCAATCTAAGGGT+TGG | 0.553194 | 6:-77295110 | MsG0680033953.01.T01:CDS |
| GGAGTTGGTGAAATTGTTGG+AGG | 0.555220 | 6:-77294991 | MsG0680033953.01.T01:CDS |
| TATTGGTAAGGATCGTTGAT+GGG | 0.557043 | 6:+77295806 | None:intergenic |
| GGTCGATTATCGCCTCGCAC+CGG | 0.575927 | 6:-77295477 | MsG0680033953.01.T01:CDS |
| TGAACTTTGAGGTATTGGTA+AGG | 0.575934 | 6:+77295794 | None:intergenic |
| GTAGCCGGTGCTCCGGTGCG+AGG | 0.576122 | 6:+77295465 | None:intergenic |
| TAAGGATCGTTGATGGGTGG+TGG | 0.577562 | 6:+77295812 | None:intergenic |
| GGCGGCATATGATGATGCTA+TGG | 0.579015 | 6:-77295441 | MsG0680033953.01.T01:CDS |
| GCTACAATTGCATATCATGC+AGG | 0.580603 | 6:-77295326 | MsG0680033953.01.T01:CDS |
| AGAAGTGTCTAATGAAGGTG+AGG | 0.582650 | 6:+77295724 | None:intergenic |
| GGATCATGAGTGGAGGGTGT+TGG | 0.586722 | 6:-77295054 | MsG0680033953.01.T01:CDS |
| ATTGTTGGAGGATAAGGGTG+TGG | 0.586811 | 6:-77294979 | MsG0680033953.01.T01:CDS |
| TTGAGCCGTTGAAAATTCAA+GGG | 0.588282 | 6:-77295274 | MsG0680033953.01.T01:CDS |
| TATGAATGGTGGAGATCCAT+TGG | 0.590004 | 6:-77295027 | MsG0680033953.01.T01:CDS |
| TCTAATGAAGGTGAGGTATG+TGG | 0.593556 | 6:+77295731 | None:intergenic |
| ACCGGAGCACCGGCTACCGG+CGG | 0.597839 | 6:-77295459 | MsG0680033953.01.T01:CDS |
| TTAGGTCAAGAGATGATGAA+TGG | 0.600234 | 6:-77295403 | MsG0680033953.01.T01:CDS |
| ATCATTCTCAAGTCTTAACT+CGG | 0.601816 | 6:+77295205 | None:intergenic |
| TCAACCAATCAAACCAAACA+TGG | 0.608131 | 6:-77295673 | MsG0680033953.01.T01:CDS |
| CAAAGCAAAGAACTTCATTG+AGG | 0.610017 | 6:-77294898 | MsG0680033953.01.T01:CDS |
| TGGTAAGGATCGTTGATGGG+TGG | 0.610868 | 6:+77295809 | None:intergenic |
| GATTAAGGATCATGAGTGGA+GGG | 0.615039 | 6:-77295060 | MsG0680033953.01.T01:CDS |
| TCATGAGTATTCCAATCTAA+GGG | 0.620597 | 6:-77295114 | MsG0680033953.01.T01:CDS |
| ATCAAATCACTAACACACAA+AGG | 0.629463 | 6:+77295173 | None:intergenic |
| TCCTTATTACGATCAACCAA+TGG | 0.629948 | 6:+77295011 | None:intergenic |
| GATTGGAATACTCATGATCA+CGG | 0.632728 | 6:+77295120 | None:intergenic |
| CCAAGATTAAGGATCATGAG+TGG | 0.635104 | 6:-77295064 | MsG0680033953.01.T01:CDS |
| AGATTAAGGATCATGAGTGG+AGG | 0.641256 | 6:-77295061 | MsG0680033953.01.T01:CDS |
| ATAGCATCATCATATGCCGC+CGG | 0.642105 | 6:+77295443 | None:intergenic |
| TGGCAAAGTTTGATTAGACA+TGG | 0.655064 | 6:+77295832 | None:intergenic |
| GTGTTGGTGAGTATGAATGG+TGG | 0.677117 | 6:-77295038 | MsG0680033953.01.T01:CDS |
| AAAATTATGGAACATCGTGG+AGG | 0.720379 | 6:+77295541 | None:intergenic |
| TGCGAGGCGATAATCGACCG+AGG | 0.723884 | 6:+77295481 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCAAAATGTTTTCTAAT+GGG | - | Chr6:77295331-77295350 | MsG0680033953.01.T01:CDS | 15.0% |
| !!! | CTTTTCAAAATGTTTTCTAA+TGG | - | Chr6:77295330-77295349 | MsG0680033953.01.T01:CDS | 20.0% |
| ! | TGAAAAATTTGCCAAGATTA+AGG | - | Chr6:77295618-77295637 | MsG0680033953.01.T01:CDS | 25.0% |
| !!! | GAAACATTTGTTGCTTTTTT+AGG | + | Chr6:77295061-77295080 | None:intergenic | 25.0% |
| ACAAAAATTATGGAACATCG+TGG | + | Chr6:77295158-77295177 | None:intergenic | 30.0% | |
| ATCAAATCACTAACACACAA+AGG | + | Chr6:77295523-77295542 | None:intergenic | 30.0% | |
| ATCATGAGTATTCCAATCTA+AGG | - | Chr6:77295578-77295597 | MsG0680033953.01.T01:CDS | 30.0% | |
| ATCATTCTCAAGTCTTAACT+CGG | + | Chr6:77295491-77295510 | None:intergenic | 30.0% | |
| CCATGAAAGAAAACAATAAG+TGG | + | Chr6:77295106-77295125 | None:intergenic | 30.0% | |
| CCATTTCAGCACAAAAATTA+TGG | + | Chr6:77295168-77295187 | None:intergenic | 30.0% | |
| TCATGAGTATTCCAATCTAA+GGG | - | Chr6:77295579-77295598 | MsG0680033953.01.T01:CDS | 30.0% | |
| ! | ATCAACCCTTGAATTTTCAA+CGG | + | Chr6:77295427-77295446 | None:intergenic | 30.0% |
| ! | ATTGTTTTCTTTCATGGAAG+TGG | - | Chr6:77295109-77295128 | MsG0680033953.01.T01:CDS | 30.0% |
| ! | CCACTTATTGTTTTCTTTCA+TGG | - | Chr6:77295103-77295122 | MsG0680033953.01.T01:CDS | 30.0% |
| ! | CCATAATTTTTGTGCTGAAA+TGG | - | Chr6:77295165-77295184 | MsG0680033953.01.T01:CDS | 30.0% |
| ! | TAATTTTTGTGCTGAAATGG+CGG | - | Chr6:77295168-77295187 | MsG0680033953.01.T01:CDS | 30.0% |
| ! | TTCAAGAAGATGGTTTTCAT+GGG | - | Chr6:77295752-77295771 | MsG0680033953.01.T01:CDS | 30.0% |
| ! | TTTCAAGAAGATGGTTTTCA+TGG | - | Chr6:77295751-77295770 | MsG0680033953.01.T01:CDS | 30.0% |
| !!! | ATATTGCGTCAACCATTTTT+TGG | - | Chr6:77295445-77295464 | MsG0680033953.01.T01:CDS | 30.0% |
| !!! | CATTTGTTGCTTTTTTAGGT+AGG | + | Chr6:77295057-77295076 | None:intergenic | 30.0% |
| AAAATTATGGAACATCGTGG+AGG | + | Chr6:77295155-77295174 | None:intergenic | 35.0% | |
| AGTATTCCAATCTAAGGGTT+GGG | - | Chr6:77295584-77295603 | MsG0680033953.01.T01:CDS | 35.0% | |
| CAAAGCAAAGAACTTCATTG+AGG | - | Chr6:77295795-77295814 | MsG0680033953.01.T01:CDS | 35.0% | |
| CTAACACACAAAGGAAAAAC+AGG | + | Chr6:77295514-77295533 | None:intergenic | 35.0% | |
| CTCAATGAAGTTCTTTGCTT+TGG | + | Chr6:77295797-77295816 | None:intergenic | 35.0% | |
| GATTGGAATACTCATGATCA+CGG | + | Chr6:77295576-77295595 | None:intergenic | 35.0% | |
| GGAATAATCTAAGCCATGTT+TGG | + | Chr6:77295036-77295055 | None:intergenic | 35.0% | |
| GTGAAATTGTTGGAGGATAA+GGG | - | Chr6:77295709-77295728 | MsG0680033953.01.T01:CDS | 35.0% | |
| GTGTGTTAGTGATTTGATGT+GGG | - | Chr6:77295525-77295544 | MsG0680033953.01.T01:CDS | 35.0% | |
| TATTGGTAAGGATCGTTGAT+GGG | + | Chr6:77294890-77294909 | None:intergenic | 35.0% | |
| TCAACCAATCAAACCAAACA+TGG | - | Chr6:77295020-77295039 | MsG0680033953.01.T01:CDS | 35.0% | |
| TCCTTATTACGATCAACCAA+TGG | + | Chr6:77295685-77295704 | None:intergenic | 35.0% | |
| TGTGTGTTAGTGATTTGATG+TGG | - | Chr6:77295524-77295543 | MsG0680033953.01.T01:CDS | 35.0% | |
| TTAGGTCAAGAGATGATGAA+TGG | - | Chr6:77295290-77295309 | MsG0680033953.01.T01:CDS | 35.0% | |
| TTGAGCCGTTGAAAATTCAA+GGG | - | Chr6:77295419-77295438 | MsG0680033953.01.T01:CDS | 35.0% | |
| TTTCTAATGGGAAATAGTGC+TGG | - | Chr6:77295343-77295362 | MsG0680033953.01.T01:CDS | 35.0% | |
| ! | ATGAAGTTCTTTGCTTTGGA+TGG | + | Chr6:77295793-77295812 | None:intergenic | 35.0% |
| ! | TCAAGAAGATGGTTTTCATG+GGG | - | Chr6:77295753-77295772 | MsG0680033953.01.T01:CDS | 35.0% |
| ! | TCCATTGGTTGATCGTAATA+AGG | - | Chr6:77295681-77295700 | MsG0680033953.01.T01:CDS | 35.0% |
| !! | GTGAAGGATTTTCAAGAAGA+TGG | - | Chr6:77295742-77295761 | MsG0680033953.01.T01:CDS | 35.0% |
| !! | TAAGCCATGTTTGGTTTGAT+TGG | + | Chr6:77295027-77295046 | None:intergenic | 35.0% |
| !! | TAAGGAGTTGGTGAAATTGT+TGG | - | Chr6:77295699-77295718 | MsG0680033953.01.T01:CDS | 35.0% |
| !! | TGAACTTTGAGGTATTGGTA+AGG | + | Chr6:77294902-77294921 | None:intergenic | 35.0% |
| !! | TGGAAGCATTGAGTTTGATT+AGG | - | Chr6:77295272-77295291 | MsG0680033953.01.T01:CDS | 35.0% |
| !! | TGTGTTGAACTTTGAGGTAT+TGG | + | Chr6:77294907-77294926 | None:intergenic | 35.0% |
| !! | TGTTTGGTTTGATTGGTTGA+TGG | + | Chr6:77295020-77295039 | None:intergenic | 35.0% |
| AGATTAAGGATCATGAGTGG+AGG | - | Chr6:77295632-77295651 | MsG0680033953.01.T01:CDS | 40.0% | |
| ATCATTCCCAACCCTTAGAT+TGG | + | Chr6:77295593-77295612 | None:intergenic | 40.0% | |
| CCAAGATTAAGGATCATGAG+TGG | - | Chr6:77295629-77295648 | MsG0680033953.01.T01:CDS | 40.0% | |
| CCACTCATGATCCTTAATCT+TGG | + | Chr6:77295632-77295651 | None:intergenic | 40.0% | |
| CTATTGGTCCCACCAAAAAA+TGG | + | Chr6:77295460-77295479 | None:intergenic | 40.0% | |
| CTTGAGCCGTTGAAAATTCA+AGG | - | Chr6:77295418-77295437 | MsG0680033953.01.T01:CDS | 40.0% | |
| GAGTATTCCAATCTAAGGGT+TGG | - | Chr6:77295583-77295602 | MsG0680033953.01.T01:CDS | 40.0% | |
| GATTAAGGATCATGAGTGGA+GGG | - | Chr6:77295633-77295652 | MsG0680033953.01.T01:CDS | 40.0% | |
| GCTACAATTGCATATCATGC+AGG | - | Chr6:77295367-77295386 | MsG0680033953.01.T01:CDS | 40.0% | |
| GGTGAAATTGTTGGAGGATA+AGG | - | Chr6:77295708-77295727 | MsG0680033953.01.T01:CDS | 40.0% | |
| GGTTGATCGTAATAAGGAGT+TGG | - | Chr6:77295687-77295706 | MsG0680033953.01.T01:CDS | 40.0% | |
| GTGAGATCTTTGGTTAGAAC+AGG | + | Chr6:77294998-77295017 | None:intergenic | 40.0% | |
| TCTAATGAAGGTGAGGTATG+TGG | + | Chr6:77294965-77294984 | None:intergenic | 40.0% | |
| TGGGATTGTGTTGAACTTTG+AGG | + | Chr6:77294913-77294932 | None:intergenic | 40.0% | |
| ! | GTATTGGTAAGGATCGTTGA+TGG | + | Chr6:77294891-77294910 | None:intergenic | 40.0% |
| ! | TATGAATGGTGGAGATCCAT+TGG | - | Chr6:77295666-77295685 | MsG0680033953.01.T01:CDS | 40.0% |
| !! | AGAAGTGTCTAATGAAGGTG+AGG | + | Chr6:77294972-77294991 | None:intergenic | 40.0% |
| !! | GGAAGAGAAGTGTCTAATGA+AGG | + | Chr6:77294977-77294996 | None:intergenic | 40.0% |
| !! | GTGGTAGTAGCTTGTTGTTT+AGG | + | Chr6:77295087-77295106 | None:intergenic | 40.0% |
| !! | TTGGTTGATGGTGAGATCTT+TGG | + | Chr6:77295008-77295027 | None:intergenic | 40.0% |
| !!! | CATTTTTTGGTGGGACCAAT+AGG | - | Chr6:77295458-77295477 | MsG0680033953.01.T01:CDS | 40.0% |
| !!! | TGCGTCAACCATTTTTTGGT+GGG | - | Chr6:77295449-77295468 | MsG0680033953.01.T01:CDS | 40.0% |
| !!! | TTGCGTCAACCATTTTTTGG+TGG | - | Chr6:77295448-77295467 | MsG0680033953.01.T01:CDS | 40.0% |
| ATAGCATCATCATATGCCGC+CGG | + | Chr6:77295253-77295272 | None:intergenic | 45.0% | |
| ATTGTTGGAGGATAAGGGTG+TGG | - | Chr6:77295714-77295733 | MsG0680033953.01.T01:CDS | 45.0% | |
| TAACTCGGACTCAGTCCTAT+TGG | + | Chr6:77295476-77295495 | None:intergenic | 45.0% | |
| TGATCACGGTCAACACCAAT+TGG | + | Chr6:77295562-77295581 | None:intergenic | 45.0% | |
| TGGGAGTTAGCGTTACCAAT+TGG | - | Chr6:77295544-77295563 | MsG0680033953.01.T01:CDS | 45.0% | |
| ! | ATTTCGAGTGAGTGTGTCGT+TGG | + | Chr6:77294933-77294952 | None:intergenic | 45.0% |
| ! | GTGTTGGTGAGTATGAATGG+TGG | - | Chr6:77295655-77295674 | MsG0680033953.01.T01:CDS | 45.0% |
| ! | TTTCGAGTGAGTGTGTCGTT+GGG | + | Chr6:77294932-77294951 | None:intergenic | 45.0% |
| !! | AGGGTGTTGGTGAGTATGAA+TGG | - | Chr6:77295652-77295671 | MsG0680033953.01.T01:CDS | 45.0% |
| !! | GGAGTTGGTGAAATTGTTGG+AGG | - | Chr6:77295702-77295721 | MsG0680033953.01.T01:CDS | 45.0% |
| !! | TTGTGCTGAAATGGCGGATA+CGG | - | Chr6:77295174-77295193 | MsG0680033953.01.T01:CDS | 45.0% |
| ! | GGCGGCATATGATGATGCTA+TGG | - | Chr6:77295252-77295271 | MsG0680033953.01.T01:CDS | 50.0% |
| ! | TAAGGATCGTTGATGGGTGG+TGG | + | Chr6:77294884-77294903 | None:intergenic | 50.0% |
| ! | TAAGGGTGTGGAAGTGGTGA+AGG | - | Chr6:77295726-77295745 | MsG0680033953.01.T01:CDS | 50.0% |
| ! | TGGTAAGGATCGTTGATGGG+TGG | + | Chr6:77294887-77294906 | None:intergenic | 50.0% |
| GGTCGAAGCAGTTGTTGCCT+CGG | - | Chr6:77295195-77295214 | MsG0680033953.01.T01:CDS | 55.0% | |
| ! | GGAGGATAAGGGTGTGGAAG+TGG | - | Chr6:77295720-77295739 | MsG0680033953.01.T01:CDS | 55.0% |
| ! | GGATCATGAGTGGAGGGTGT+TGG | - | Chr6:77295639-77295658 | MsG0680033953.01.T01:CDS | 55.0% |
| CATCATATGCCGCCGGTAGC+CGG | + | Chr6:77295246-77295265 | None:intergenic | 60.0% | |
| GGTCGATTATCGCCTCGCAC+CGG | - | Chr6:77295216-77295235 | MsG0680033953.01.T01:CDS | 60.0% | |
| TGCGAGGCGATAATCGACCG+AGG | + | Chr6:77295215-77295234 | None:intergenic | 60.0% | |
| ATCGCCTCGCACCGGAGCAC+CGG | - | Chr6:77295224-77295243 | MsG0680033953.01.T01:CDS | 70.0% | |
| GTAGCCGGTGCTCCGGTGCG+AGG | + | Chr6:77295231-77295250 | None:intergenic | 75.0% | |
| !! | ACCGGAGCACCGGCTACCGG+CGG | - | Chr6:77295234-77295253 | MsG0680033953.01.T01:CDS | 75.0% |
| !! | CGCACCGGAGCACCGGCTAC+CGG | - | Chr6:77295231-77295250 | MsG0680033953.01.T01:CDS | 75.0% |
| ! | GCCGCCGGTAGCCGGTGCTC+CGG | + | Chr6:77295238-77295257 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 77294863 | 77295852 | 77294863 | ID=MsG0680033953.01;Name=MsG0680033953.01 |
| Chr6 | mRNA | 77294863 | 77295852 | 77294863 | ID=MsG0680033953.01.T01;Parent=MsG0680033953.01;Name=MsG0680033953.01.T01;_AED=0.48;_eAED=0.48;_QI=0|-1|0|1|-1|1|1|0|329 |
| Chr6 | exon | 77294863 | 77295852 | 77294863 | ID=MsG0680033953.01.T01:exon:476;Parent=MsG0680033953.01.T01 |
| Chr6 | CDS | 77294863 | 77295852 | 77294863 | ID=MsG0680033953.01.T01:cds;Parent=MsG0680033953.01.T01 |
| Gene Sequence |
| Protein sequence |
