AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680033952.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680033952.01.T01 MTR_6g464320 92.424 330 25 0 1 330 1 330 0.0 640
MsG0680033952.01.T01 MTR_6g464280 84.049 326 51 1 1 326 1 325 0.0 561
MsG0680033952.01.T01 MTR_6g464510 69.419 327 94 4 2 326 5 327 5.00e-160 450
MsG0680033952.01.T01 MTR_1g102160 53.776 331 141 5 1 325 1 325 1.59e-115 337
MsG0680033952.01.T01 MTR_1g102170 52.215 316 142 3 11 324 29 337 4.91e-113 331
MsG0680033952.01.T01 MTR_6g464120 53.968 315 139 5 4 317 8 317 1.53e-107 324
MsG0680033952.01.T01 MTR_0007s0520 49.240 329 146 7 2 326 14 325 1.65e-99 296
MsG0680033952.01.T01 MTR_8g035520 47.720 329 156 5 8 329 9 328 1.86e-95 286
MsG0680033952.01.T01 MTR_8g035540 46.296 324 154 6 13 325 2 316 3.32e-89 270
MsG0680033952.01.T01 MTR_8g035500 36.562 320 189 6 13 325 5 317 4.22e-73 229
MsG0680033952.01.T01 MTR_1g111280 35.629 334 175 9 17 330 33 346 1.27e-54 182
MsG0680033952.01.T01 MTR_0007s0480 54.651 172 72 4 159 326 2 171 1.46e-52 171
MsG0680033952.01.T01 MTR_7g406880 34.505 313 178 9 35 326 44 350 3.52e-52 176
MsG0680033952.01.T01 MTR_6g065430 38.306 248 143 4 47 294 58 295 4.01e-48 165
MsG0680033952.01.T01 MTR_6g065120 38.559 236 131 5 25 249 33 265 1.42e-46 161
MsG0680033952.01.T01 MTR_6g065110 34.333 300 185 6 32 326 43 335 1.72e-45 158
MsG0680033952.01.T01 MTR_6g065400 33.546 313 187 8 25 326 32 334 5.82e-45 157
MsG0680033952.01.T01 MTR_6g065270 36.667 240 138 4 17 245 22 258 2.39e-44 155
MsG0680033952.01.T01 MTR_7g107040 37.838 259 136 9 81 325 69 316 9.45e-44 153
MsG0680033952.01.T01 MTR_6g065370 32.907 313 189 8 25 326 32 334 2.08e-43 152
MsG0680033952.01.T01 MTR_4g050140 30.031 323 195 6 20 328 13 318 1.69e-42 149
MsG0680033952.01.T01 MTR_1g012430 32.836 268 167 5 25 291 15 270 1.49e-41 147
MsG0680033952.01.T01 MTR_7g056207 33.220 295 176 9 39 326 67 347 5.14e-41 147
MsG0680033952.01.T01 MTR_4g086510 31.879 298 179 9 39 326 35 318 2.01e-39 142
MsG0680033952.01.T01 MTR_4g086480 32.215 298 173 10 39 325 39 318 1.86e-36 134
MsG0680033952.01.T01 MTR_6g065340 34.272 213 117 4 37 245 58 251 1.96e-35 131
MsG0680033952.01.T01 MTR_1g089310 36.638 232 135 5 79 309 103 323 2.10e-35 131
MsG0680033952.01.T01 MTR_3g101420 31.230 317 186 9 23 326 18 315 2.42e-35 130
MsG0680033952.01.T01 MTR_1g089310 36.638 232 135 5 79 309 119 339 2.45e-35 132
MsG0680033952.01.T01 MTR_7g093950 32.753 287 173 7 53 326 68 347 2.60e-35 131
MsG0680033952.01.T01 MTR_4g086470 32.171 258 154 7 39 291 38 279 1.77e-34 128
MsG0680033952.01.T01 MTR_1g082210 30.592 304 183 9 15 305 31 319 4.59e-31 120
MsG0680033952.01.T01 MTR_4g086540 28.571 301 181 7 28 326 34 302 4.68e-30 116
MsG0680033952.01.T01 MTR_1g105020 30.745 322 196 12 17 325 15 322 1.31e-29 115
MsG0680033952.01.T01 MTR_3g012440 30.802 237 149 5 63 294 74 300 1.96e-28 112
MsG0680033952.01.T01 MTR_3g450680 29.618 314 193 11 27 325 31 331 2.88e-28 112
MsG0680033952.01.T01 MTR_8g040860 29.022 317 192 13 25 325 29 328 4.18e-27 108
MsG0680033952.01.T01 MTR_5g005900 27.217 327 200 13 20 325 17 326 5.26e-26 106
MsG0680033952.01.T01 MTR_5g005850 28.528 326 195 12 20 325 21 328 1.56e-25 104
MsG0680033952.01.T01 MTR_5g005920 26.129 310 190 11 33 325 43 330 7.40e-25 103
MsG0680033952.01.T01 MTR_6g022710 31.250 208 109 3 75 248 154 361 6.55e-23 99.0
MsG0680033952.01.T01 MTR_7g051020 29.747 316 188 12 27 325 27 325 1.85e-22 96.3
MsG0680033952.01.T01 MTR_1g104930 30.830 253 149 8 49 291 48 284 4.98e-21 92.4
MsG0680033952.01.T01 MTR_1g104933 31.765 255 140 10 49 291 46 278 2.65e-18 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680033952.01.T01 AT5G62180 46.729 321 167 3 8 325 4 323 3.10e-102 303
MsG0680033952.01.T01 AT2G45600 43.769 329 161 7 8 327 4 317 9.24e-89 269
MsG0680033952.01.T01 AT2G45610 39.939 328 178 6 9 326 6 324 1.79e-78 243
MsG0680033952.01.T01 AT5G16080 36.431 269 148 7 35 294 51 305 2.06e-48 166
MsG0680033952.01.T01 AT1G68620 36.513 304 172 8 2 302 15 300 9.63e-48 164
MsG0680033952.01.T01 AT5G23530 36.842 228 130 4 22 245 32 249 5.11e-41 146
MsG0680033952.01.T01 AT5G06570 35.354 297 162 10 47 328 47 328 4.89e-38 138
MsG0680033952.01.T01 AT5G06570 35.354 297 162 10 47 328 47 328 4.89e-38 138
MsG0680033952.01.T01 AT5G06570 35.354 297 162 10 47 328 62 343 5.24e-38 138
MsG0680033952.01.T01 AT5G06570 35.354 297 162 10 47 328 62 343 5.24e-38 138
MsG0680033952.01.T01 AT1G19190 31.250 272 168 7 25 291 18 275 1.49e-35 131
MsG0680033952.01.T01 AT1G47480 28.025 314 202 8 23 330 19 314 3.87e-34 127
MsG0680033952.01.T01 AT1G49640 34.197 193 123 3 12 204 6 194 5.87e-34 127
MsG0680033952.01.T01 AT5G27320 34.940 249 131 8 15 247 31 264 3.01e-33 125
MsG0680033952.01.T01 AT3G48700 32.000 250 156 5 39 280 32 275 3.94e-33 125
MsG0680033952.01.T01 AT3G63010 34.156 243 139 6 54 294 86 309 8.01e-32 122
MsG0680033952.01.T01 AT3G48690 29.123 285 178 8 17 291 12 282 9.63e-31 119
MsG0680033952.01.T01 AT3G05120 39.053 169 95 3 80 247 105 266 1.72e-27 110
MsG0680033952.01.T01 AT1G49660 33.140 172 106 3 40 206 33 200 9.08e-27 108
MsG0680033952.01.T01 AT5G14310 27.444 266 150 3 21 248 96 356 3.91e-25 105
MsG0680033952.01.T01 AT1G49650 31.977 172 107 4 40 206 89 255 7.96e-25 103
MsG0680033952.01.T01 AT2G03550 30.939 181 110 4 28 202 21 192 1.70e-23 99.0
MsG0680033952.01.T01 AT3G27320 30.137 219 111 4 70 248 123 339 2.64e-23 100
MsG0680033952.01.T01 AT3G27320 30.137 219 111 4 70 248 155 371 3.16e-23 100

Find 84 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACACATAATTCATGAAATT+TGG 0.180622 6:+77274626 None:intergenic
GTGGCAGTAACTTGTTATTT+TGG 0.184949 6:+77274700 None:intergenic
ATAAATTTCTTTGCTTTAGA+TGG 0.233057 6:+77273994 None:intergenic
TTGGTTGATGTTAAGATCTT+TGG 0.327803 6:+77274779 None:intergenic
CTATTCTAAGTGTTACCTAA+TGG 0.334421 6:-77274454 MsG0680033952.01.T01:CDS
TCATGAATTATGTGTTGATA+TGG 0.358457 6:-77274619 MsG0680033952.01.T01:CDS
TAAGGGTGTGGATGTTGTTA+AGG 0.362095 6:-77274058 MsG0680033952.01.T01:CDS
TGGAAGCATTGAGTTTGATT+AGG 0.366794 6:-77274512 MsG0680033952.01.T01:CDS
TATTCTAAGTGTTACCTAAT+GGG 0.394316 6:-77274453 MsG0680033952.01.T01:CDS
TTAAGATCTTTGGTAAGAAC+AGG 0.400333 6:+77274789 None:intergenic
TGGGAGTTGGCATTACCTAT+TGG 0.407630 6:-77274240 MsG0680033952.01.T01:CDS
GGAATAATCGAAGCCATGTT+TGG 0.417087 6:+77274751 None:intergenic
CATCATATGCCGCCGGTAAC+CGG 0.417101 6:+77274541 None:intergenic
CGCACCGGAGCACCGGTTAC+CGG 0.420881 6:-77274553 MsG0680033952.01.T01:CDS
ATATCGAGTAAGTGTATCAT+TGG 0.426484 6:+77274854 None:intergenic
CAACTCTGATTCAGTCCTAT+TGG 0.435907 6:+77274311 None:intergenic
GTGTGTTAGTGATTTGTGTT+GGG 0.440638 6:-77274259 MsG0680033952.01.T01:CDS
TGATCACGATCAACTCCAAT+AGG 0.440937 6:+77274225 None:intergenic
GGATCAAGGGTGGAGGCTAT+TGG 0.445047 6:-77274145 MsG0680033952.01.T01:CDS
CTCCAGCACTATTACCCATT+AGG 0.447172 6:+77274439 None:intergenic
TAAGGATCGGTTGTCGGTGG+TGG 0.465102 6:+77274903 None:intergenic
GAAGCCATGTTTGGTTTGAT+TGG 0.466485 6:+77274760 None:intergenic
TGTCAACGGTGGGGATCTAT+TGG 0.468178 6:-77274118 MsG0680033952.01.T01:CDS
GCCGCCGGTAACCGGTGCTC+CGG 0.468450 6:+77274549 None:intergenic
CTAACACACAAAGGAAAATC+CGG 0.478583 6:+77274273 None:intergenic
TGTGTGTTAGTGATTTGTGT+TGG 0.479150 6:-77274260 MsG0680033952.01.T01:CDS
TAGTGATTTGTGTTGGGAGT+TGG 0.482769 6:-77274253 MsG0680033952.01.T01:CDS
TCAACATCAATCTCAACCAT+TGG 0.489151 6:+77274189 None:intergenic
TACCTAATGGGTAATAGTGC+TGG 0.489408 6:-77274441 MsG0680033952.01.T01:CDS
GCTACCATTGCATACCATGC+AGG 0.493871 6:-77274417 MsG0680033952.01.T01:CDS
TTAGATAAGATAAAGGATCA+AGG 0.495282 6:-77274159 MsG0680033952.01.T01:CDS
GTTGAGACTTGAGAATGATC+CGG 0.497765 6:-77274292 MsG0680033952.01.T01:CDS
ACATAATTCATGAAATTTGG+TGG 0.500259 6:+77274629 None:intergenic
TTTGAGGAGTTGGTAAGGAT+CGG 0.503990 6:+77274890 None:intergenic
GTGTATCATTGGGATGGTGG+TGG 0.506884 6:+77274865 None:intergenic
AAAAGAGTTGGTGCAATTGA+TGG 0.507179 6:-77274085 MsG0680033952.01.T01:CDS
ATCAACCCTTGGATCTTCAA+TGG 0.512904 6:+77274360 None:intergenic
GGTGCAATTGATGGAGGATA+AGG 0.517686 6:-77274076 MsG0680033952.01.T01:CDS
TTTCAAGAAGATGGTTGCCA+TGG 0.523109 6:-77274033 MsG0680033952.01.T01:CDS
AGTTGGTAAGGATCGGTTGT+CGG 0.523290 6:+77274897 None:intergenic
GAAATTTATTGAGTTAGTGA+AGG 0.523975 6:-77273980 MsG0680033952.01.T01:CDS
CCATGAAAGAAAACAATAAG+TGG 0.524990 6:+77274681 None:intergenic
TGTCGAAGCAGTTGTCGCCT+CGG 0.526890 6:-77274589 MsG0680033952.01.T01:CDS
TATCGAGTAAGTGTATCATT+GGG 0.528344 6:+77274855 None:intergenic
TTAGGTCAAGCAAAGATGAA+TGG 0.530318 6:-77274494 MsG0680033952.01.T01:CDS
ATCGCCTCGCACCGGAGCAC+CGG 0.536876 6:-77274560 MsG0680033952.01.T01:CDS
TTTGAGCCATTGAAGATCCA+AGG 0.542044 6:-77274366 MsG0680033952.01.T01:CDS
AAATTTATTGAGTTAGTGAA+GGG 0.543509 6:-77273979 MsG0680033952.01.T01:CDS
GGAAGAGAAGTGTCTAATGA+AGG 0.545290 6:+77274810 None:intergenic
GGTTGTCGGTGGTGGATGCA+TGG 0.545849 6:+77274911 None:intergenic
TAGATAAGATAAAGGATCAA+GGG 0.557087 6:-77274158 MsG0680033952.01.T01:CDS
TATTGGTGAGTGTCAACGGT+GGG 0.568537 6:-77274128 MsG0680033952.01.T01:CDS
GGCGGCATATGATGATGCTA+TGG 0.579015 6:-77274532 MsG0680033952.01.T01:CDS
TTGAGCCATTGAAGATCCAA+GGG 0.580380 6:-77274365 MsG0680033952.01.T01:CDS
GTAACCGGTGCTCCGGTGCG+AGG 0.582296 6:+77274556 None:intergenic
AGAAGTGTCTAATGAAGGTG+AGG 0.582650 6:+77274815 None:intergenic
TAATTCATGAAATTTGGTGG+AGG 0.583966 6:+77274632 None:intergenic
ATTGATGGAGGATAAGGGTG+TGG 0.586811 6:-77274070 MsG0680033952.01.T01:CDS
ATAAGATAAAGGATCAAGGG+TGG 0.587545 6:-77274155 MsG0680033952.01.T01:CDS
GTGCAATTGATGGAGGATAA+GGG 0.588351 6:-77274075 MsG0680033952.01.T01:CDS
GTTGACGCAATATCAACCCT+TGG 0.594787 6:+77274349 None:intergenic
CAACTACACGTAGCCCTGCA+TGG 0.595917 6:+77274403 None:intergenic
AGATAAAGGATCAAGGGTGG+AGG 0.597761 6:-77274152 MsG0680033952.01.T01:CDS
AGGCTATTGGTGAGTGTCAA+CGG 0.603086 6:-77274132 MsG0680033952.01.T01:CDS
CGAAGCAGTTGTCGCCTCGG+TGG 0.606345 6:-77274586 MsG0680033952.01.T01:CDS
GGTGGATTATCGCCTCGCAC+CGG 0.611850 6:-77274568 MsG0680033952.01.T01:CDS
GGTTGATCGTGCAAAAGAGT+TGG 0.615439 6:-77274097 MsG0680033952.01.T01:CDS
TCAACCAATCAAACCAAACA+TGG 0.620670 6:-77274764 MsG0680033952.01.T01:CDS
CACAAATCACTAACACACAA+AGG 0.622904 6:+77274264 None:intergenic
CTACCATTGCATACCATGCA+GGG 0.623078 6:-77274416 MsG0680033952.01.T01:CDS
GAGTAAGTGTATCATTGGGA+TGG 0.623555 6:+77274859 None:intergenic
ATTGGTGAGTGTCAACGGTG+GGG 0.628502 6:-77274127 MsG0680033952.01.T01:CDS
TAGCCCTGCATGGTATGCAA+TGG 0.633352 6:+77274413 None:intergenic
AGAGTTGGTGCAATTGATGG+AGG 0.635224 6:-77274082 MsG0680033952.01.T01:CDS
TGGTAAGGATCGGTTGTCGG+TGG 0.635695 6:+77274900 None:intergenic
ATAGCATCATCATATGCCGC+CGG 0.638454 6:+77274534 None:intergenic
ACCGGAGCACCGGTTACCGG+CGG 0.650002 6:-77274550 MsG0680033952.01.T01:CDS
TGAATTATGTGTTGATATGG+CGG 0.656830 6:-77274616 MsG0680033952.01.T01:CDS
TAAGTGTATCATTGGGATGG+TGG 0.658508 6:+77274862 None:intergenic
TCATGAGTATTGCAATCCAA+TGG 0.662746 6:-77274205 MsG0680033952.01.T01:CDS
TCTAATGAAGGTGAGGTGTG+TGG 0.664418 6:+77274822 None:intergenic
GTTTAATTAAGCATCGAACG+TGG 0.668258 6:+77273948 None:intergenic
CTATTGGTGAGTGTCAACGG+TGG 0.715797 6:-77274129 MsG0680033952.01.T01:CDS
TGCGAGGCGATAATCCACCG+AGG 0.794949 6:+77274572 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAAAATTAGATAAGATAA+AGG - Chr6:77274712-77274731 MsG0680033952.01.T01:CDS 15.0%
!! AAATTTATTGAGTTAGTGAA+GGG - Chr6:77274899-77274918 MsG0680033952.01.T01:CDS 20.0%
!! AACACATAATTCATGAAATT+TGG + Chr6:77274255-77274274 None:intergenic 20.0%
!!! ATAAATTTCTTTGCTTTAGA+TGG + Chr6:77274887-77274906 None:intergenic 20.0%
!!! GAAATATTTGTTGCTTTTTT+AGG + Chr6:77274155-77274174 None:intergenic 20.0%
! ACATAATTCATGAAATTTGG+TGG + Chr6:77274252-77274271 None:intergenic 25.0%
! GAAATTTATTGAGTTAGTGA+AGG - Chr6:77274898-77274917 MsG0680033952.01.T01:CDS 25.0%
! TAGATAAGATAAAGGATCAA+GGG - Chr6:77274720-77274739 MsG0680033952.01.T01:CDS 25.0%
! TATTCTAAGTGTTACCTAAT+GGG - Chr6:77274425-77274444 MsG0680033952.01.T01:CDS 25.0%
! TTAGATAAGATAAAGGATCA+AGG - Chr6:77274719-77274738 MsG0680033952.01.T01:CDS 25.0%
!! TCATGAATTATGTGTTGATA+TGG - Chr6:77274259-77274278 MsG0680033952.01.T01:CDS 25.0%
!!! TATTTGTTGCTTTTTTAGGT+AGG + Chr6:77274151-77274170 None:intergenic 25.0%
ATATCGAGTAAGTGTATCAT+TGG + Chr6:77274027-77274046 None:intergenic 30.0%
CCATGAAAGAAAACAATAAG+TGG + Chr6:77274200-77274219 None:intergenic 30.0%
CTATTCTAAGTGTTACCTAA+TGG - Chr6:77274424-77274443 MsG0680033952.01.T01:CDS 30.0%
TATCGAGTAAGTGTATCATT+GGG + Chr6:77274026-77274045 None:intergenic 30.0%
TTAAGATCTTTGGTAAGAAC+AGG + Chr6:77274092-77274111 None:intergenic 30.0%
! ATTGTTTTCTTTCATGGTAG+TGG - Chr6:77274203-77274222 MsG0680033952.01.T01:CDS 30.0%
! CCACTTATTGTTTTCTTTCA+TGG - Chr6:77274197-77274216 MsG0680033952.01.T01:CDS 30.0%
! TAATTCATGAAATTTGGTGG+AGG + Chr6:77274249-77274268 None:intergenic 30.0%
! TGAATTATGTGTTGATATGG+CGG - Chr6:77274262-77274281 MsG0680033952.01.T01:CDS 30.0%
! TTGGTTGATGTTAAGATCTT+TGG + Chr6:77274102-77274121 None:intergenic 30.0%
!! GTTAAGGATTTTCAAGAAGA+TGG - Chr6:77274836-77274855 MsG0680033952.01.T01:CDS 30.0%
!!! ATATTGCGTCAACCATTTTT+TGG - Chr6:77274539-77274558 MsG0680033952.01.T01:CDS 30.0%
ATAAGATAAAGGATCAAGGG+TGG - Chr6:77274723-77274742 MsG0680033952.01.T01:CDS 35.0%
CACAAATCACTAACACACAA+AGG + Chr6:77274617-77274636 None:intergenic 35.0%
CTAACACACAAAGGAAAATC+CGG + Chr6:77274608-77274627 None:intergenic 35.0%
TCAACATCAATCTCAACCAT+TGG + Chr6:77274692-77274711 None:intergenic 35.0%
TCAACCAATCAAACCAAACA+TGG - Chr6:77274114-77274133 MsG0680033952.01.T01:CDS 35.0%
TTAGGTCAAGCAAAGATGAA+TGG - Chr6:77274384-77274403 MsG0680033952.01.T01:CDS 35.0%
! GTGTGTTAGTGATTTGTGTT+GGG - Chr6:77274619-77274638 MsG0680033952.01.T01:CDS 35.0%
! TCATGAGTATTGCAATCCAA+TGG - Chr6:77274673-77274692 MsG0680033952.01.T01:CDS 35.0%
! TGTGTGTTAGTGATTTGTGT+TGG - Chr6:77274618-77274637 MsG0680033952.01.T01:CDS 35.0%
!! AAAAGAGTTGGTGCAATTGA+TGG - Chr6:77274793-77274812 MsG0680033952.01.T01:CDS 35.0%
!! TGGAAGCATTGAGTTTGATT+AGG - Chr6:77274366-77274385 MsG0680033952.01.T01:CDS 35.0%
!!! GTGGCAGTAACTTGTTATTT+TGG + Chr6:77274181-77274200 None:intergenic 35.0%
ATCAACCCTTGGATCTTCAA+TGG + Chr6:77274521-77274540 None:intergenic 40.0%
CAACTCTGATTCAGTCCTAT+TGG + Chr6:77274570-77274589 None:intergenic 40.0%
CTATTGGTCCCACCAAAAAA+TGG + Chr6:77274554-77274573 None:intergenic 40.0%
GAGTAAGTGTATCATTGGGA+TGG + Chr6:77274022-77274041 None:intergenic 40.0%
GCTCAAAAAACTCAACTCCA+TGG + Chr6:77274865-77274884 None:intergenic 40.0%
GGAATAATCGAAGCCATGTT+TGG + Chr6:77274130-77274149 None:intergenic 40.0%
GTGCAATTGATGGAGGATAA+GGG - Chr6:77274803-77274822 MsG0680033952.01.T01:CDS 40.0%
GTTGAGACTTGAGAATGATC+CGG - Chr6:77274586-77274605 MsG0680033952.01.T01:CDS 40.0%
TAAGTGTATCATTGGGATGG+TGG + Chr6:77274019-77274038 None:intergenic 40.0%
TGATCACGATCAACTCCAAT+AGG + Chr6:77274656-77274675 None:intergenic 40.0%
TTGAGCCATTGAAGATCCAA+GGG - Chr6:77274513-77274532 MsG0680033952.01.T01:CDS 40.0%
TTTCAAGAAGATGGTTGCCA+TGG - Chr6:77274845-77274864 MsG0680033952.01.T01:CDS 40.0%
TTTGAGCCATTGAAGATCCA+AGG - Chr6:77274512-77274531 MsG0680033952.01.T01:CDS 40.0%
! TAAGGGTGTGGATGTTGTTA+AGG - Chr6:77274820-77274839 MsG0680033952.01.T01:CDS 40.0%
! TACCTAATGGGTAATAGTGC+TGG - Chr6:77274437-77274456 MsG0680033952.01.T01:CDS 40.0%
! TAGTGATTTGTGTTGGGAGT+TGG - Chr6:77274625-77274644 MsG0680033952.01.T01:CDS 40.0%
!! AGAAGTGTCTAATGAAGGTG+AGG + Chr6:77274066-77274085 None:intergenic 40.0%
!! GAAGCCATGTTTGGTTTGAT+TGG + Chr6:77274121-77274140 None:intergenic 40.0%
!! GGAAGAGAAGTGTCTAATGA+AGG + Chr6:77274071-77274090 None:intergenic 40.0%
!! TTTGAGGAGTTGGTAAGGAT+CGG + Chr6:77273991-77274010 None:intergenic 40.0%
!!! CATTTTTTGGTGGGACCAAT+AGG - Chr6:77274552-77274571 MsG0680033952.01.T01:CDS 40.0%
!!! TGCGTCAACCATTTTTTGGT+GGG - Chr6:77274543-77274562 MsG0680033952.01.T01:CDS 40.0%
!!! TGGATTTTGAGGAGTTGGTA+AGG + Chr6:77273996-77274015 None:intergenic 40.0%
!!! TTGCGTCAACCATTTTTTGG+TGG - Chr6:77274542-77274561 MsG0680033952.01.T01:CDS 40.0%
AGATAAAGGATCAAGGGTGG+AGG - Chr6:77274726-77274745 MsG0680033952.01.T01:CDS 45.0%
AGGCTATTGGTGAGTGTCAA+CGG - Chr6:77274746-77274765 MsG0680033952.01.T01:CDS 45.0%
ATAGCATCATCATATGCCGC+CGG + Chr6:77274347-77274366 None:intergenic 45.0%
ATTGATGGAGGATAAGGGTG+TGG - Chr6:77274808-77274827 MsG0680033952.01.T01:CDS 45.0%
CTACCATTGCATACCATGCA+GGG - Chr6:77274462-77274481 MsG0680033952.01.T01:CDS 45.0%
CTCCAGCACTATTACCCATT+AGG + Chr6:77274442-77274461 None:intergenic 45.0%
GGTGCAATTGATGGAGGATA+AGG - Chr6:77274802-77274821 MsG0680033952.01.T01:CDS 45.0%
GGTTGATCGTGCAAAAGAGT+TGG - Chr6:77274781-77274800 MsG0680033952.01.T01:CDS 45.0%
GTTGACGCAATATCAACCCT+TGG + Chr6:77274532-77274551 None:intergenic 45.0%
TATTGGTGAGTGTCAACGGT+GGG - Chr6:77274750-77274769 MsG0680033952.01.T01:CDS 45.0%
TCTAATGAAGGTGAGGTGTG+TGG + Chr6:77274059-77274078 None:intergenic 45.0%
TGGGAGTTGGCATTACCTAT+TGG - Chr6:77274638-77274657 MsG0680033952.01.T01:CDS 45.0%
!! AGAGTTGGTGCAATTGATGG+AGG - Chr6:77274796-77274815 MsG0680033952.01.T01:CDS 45.0%
!! AGTTGGTAAGGATCGGTTGT+CGG + Chr6:77273984-77274003 None:intergenic 45.0%
ATTGGTGAGTGTCAACGGTG+GGG - Chr6:77274751-77274770 MsG0680033952.01.T01:CDS 50.0%
CTATTGGTGAGTGTCAACGG+TGG - Chr6:77274749-77274768 MsG0680033952.01.T01:CDS 50.0%
GCTACCATTGCATACCATGC+AGG - Chr6:77274461-77274480 MsG0680033952.01.T01:CDS 50.0%
TAGCCCTGCATGGTATGCAA+TGG + Chr6:77274468-77274487 None:intergenic 50.0%
TGTCAACGGTGGGGATCTAT+TGG - Chr6:77274760-77274779 MsG0680033952.01.T01:CDS 50.0%
! GGCGGCATATGATGATGCTA+TGG - Chr6:77274346-77274365 MsG0680033952.01.T01:CDS 50.0%
! GTGTATCATTGGGATGGTGG+TGG + Chr6:77274016-77274035 None:intergenic 50.0%
!!! GGTGGTGGATTTTGAGGAGT+TGG + Chr6:77274001-77274020 None:intergenic 50.0%
!!! TGGGATGGTGGTGGATTTTG+AGG + Chr6:77274007-77274026 None:intergenic 50.0%
CAACTACACGTAGCCCTGCA+TGG + Chr6:77274478-77274497 None:intergenic 55.0%
CATCATATGCCGCCGGTAAC+CGG + Chr6:77274340-77274359 None:intergenic 55.0%
GGATCAAGGGTGGAGGCTAT+TGG - Chr6:77274733-77274752 MsG0680033952.01.T01:CDS 55.0%
TAAGGATCGGTTGTCGGTGG+TGG + Chr6:77273978-77273997 None:intergenic 55.0%
TGGTAAGGATCGGTTGTCGG+TGG + Chr6:77273981-77274000 None:intergenic 55.0%
TGTCGAAGCAGTTGTCGCCT+CGG - Chr6:77274289-77274308 MsG0680033952.01.T01:CDS 55.0%
TGCGAGGCGATAATCCACCG+AGG + Chr6:77274309-77274328 None:intergenic 60.0%
!! GGTGGATTATCGCCTCGCAC+CGG - Chr6:77274310-77274329 MsG0680033952.01.T01:CDS 60.0%
!! GGTTGTCGGTGGTGGATGCA+TGG + Chr6:77273970-77273989 None:intergenic 60.0%
CGAAGCAGTTGTCGCCTCGG+TGG - Chr6:77274292-77274311 MsG0680033952.01.T01:CDS 65.0%
ATCGCCTCGCACCGGAGCAC+CGG - Chr6:77274318-77274337 MsG0680033952.01.T01:CDS 70.0%
GTAACCGGTGCTCCGGTGCG+AGG + Chr6:77274325-77274344 None:intergenic 70.0%
!! ACCGGAGCACCGGTTACCGG+CGG - Chr6:77274328-77274347 MsG0680033952.01.T01:CDS 70.0%
!! CGCACCGGAGCACCGGTTAC+CGG - Chr6:77274325-77274344 MsG0680033952.01.T01:CDS 70.0%
GCCGCCGGTAACCGGTGCTC+CGG + Chr6:77274332-77274351 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr6 gene 77273954 77274946 77273954 ID=MsG0680033952.01;Name=MsG0680033952.01
Chr6 mRNA 77273954 77274946 77273954 ID=MsG0680033952.01.T01;Parent=MsG0680033952.01;Name=MsG0680033952.01.T01;_AED=0.48;_eAED=0.48;_QI=0|-1|0|1|-1|1|1|0|330
Chr6 exon 77273954 77274946 77273954 ID=MsG0680033952.01.T01:exon:475;Parent=MsG0680033952.01.T01
Chr6 CDS 77273954 77274946 77273954 ID=MsG0680033952.01.T01:cds;Parent=MsG0680033952.01.T01
Gene Sequence

>MsG0680033952.01.T01

ATGTCTAATCAAACCATGCATCCACCACCGACAACCGATCCTTACCAACTCCTCAAAATCCACCACCATCCCAATGATACACTTACTCGATATTTTGAAGATCCACACACCTCACCTTCATTAGACACTTCTCTTCCTGTTCTTACCAAAGATCTTAACATCAACCAATCAAACCAAACATGGCTTCGATTATTCCTACCTAAAAAAGCAACAAATATTTCAAACCAAAATAACAAGTTACTGCCACTTATTGTTTTCTTTCATGGTAGTGGCTTCATCGTACAAAGTGCAGCCTCCACCAAATTTCATGAATTATGTGTTGATATGGCGGATACTGTCGAAGCAGTTGTCGCCTCGGTGGATTATCGCCTCGCACCGGAGCACCGGTTACCGGCGGCATATGATGATGCTATGGAAGCATTGAGTTTGATTAGGTCAAGCAAAGATGAATGGTTGACTAAATATGTTGACTATTCTAAGTGTTACCTAATGGGTAATAGTGCTGGAGCTACCATTGCATACCATGCAGGGCTACGTGTAGTTGAAAACGTGAATGATTTTGAGCCATTGAAGATCCAAGGGTTGATATTGCGTCAACCATTTTTTGGTGGGACCAATAGGACTGAATCAGAGTTGAGACTTGAGAATGATCCGGATTTTCCTTTGTGTGTTAGTGATTTGTGTTGGGAGTTGGCATTACCTATTGGAGTTGATCGTGATCATGAGTATTGCAATCCAATGGTTGAGATTGATGTTGATGAAAAATTAGATAAGATAAAGGATCAAGGGTGGAGGCTATTGGTGAGTGTCAACGGTGGGGATCTATTGGTTGATCGTGCAAAAGAGTTGGTGCAATTGATGGAGGATAAGGGTGTGGATGTTGTTAAGGATTTTCAAGAAGATGGTTGCCATGGAGTTGAGTTTTTTGAGCCATCTAAAGCAAAGAAATTTATTGAGTTAGTGAAGGGCTTCATTTCCACGTTCGATGCTTAA

Protein sequence

>MsG0680033952.01.T01

MSNQTMHPPPTTDPYQLLKIHHHPNDTLTRYFEDPHTSPSLDTSLPVLTKDLNINQSNQTWLRLFLPKKATNISNQNNKLLPLIVFFHGSGFIVQSAASTKFHELCVDMADTVEAVVASVDYRLAPEHRLPAAYDDAMEALSLIRSSKDEWLTKYVDYSKCYLMGNSAGATIAYHAGLRVVENVNDFEPLKIQGLILRQPFFGGTNRTESELRLENDPDFPLCVSDLCWELALPIGVDRDHEYCNPMVEIDVDEKLDKIKDQGWRLLVSVNGGDLLVDRAKELVQLMEDKGVDVVKDFQEDGCHGVEFFEPSKAKKFIELVKGFISTFDA*