Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024695.01.T01 | XP_003611499.1 | 96.703 | 91 | 3 | 0 | 2 | 92 | 121 | 211 | 1.60E-52 | 177 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024695.01.T01 | Q9T072 | 60.494 | 81 | 28 | 1 | 5 | 85 | 131 | 207 | 9.78E-24 | 95.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024695.01.T01 | G7K131 | 96.703 | 91 | 3 | 0 | 2 | 92 | 121 | 211 | 7.65e-53 | 177 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0580024695.01.T01 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000218.01 | MsG0580024695.01 | -0.821077 | 4.889959e-53 | 3.938866e-50 |
| MsG0180004814.01 | MsG0580024695.01 | 0.802299 | 5.991055e-49 | 2.924519e-46 |
| MsG0480023978.01 | MsG0580024695.01 | 0.816835 | 4.506741e-52 | 3.228254e-49 |
| MsG0580024695.01 | MsG0580029919.01 | 0.820974 | 5.165253e-53 | 4.148700e-50 |
| MsG0380017803.01 | MsG0580024695.01 | 0.800894 | 1.163600e-48 | 5.481284e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024695.01.T01 | MTR_5g014600 | 96.703 | 91 | 3 | 0 | 2 | 92 | 121 | 211 | 1.94e-56 | 177 |
| MsG0580024695.01.T01 | MTR_4g097950 | 59.551 | 89 | 29 | 2 | 6 | 87 | 39 | 127 | 1.38e-26 | 98.6 |
| MsG0580024695.01.T01 | MTR_5g014520 | 59.302 | 86 | 30 | 1 | 12 | 92 | 134 | 219 | 5.73e-25 | 95.9 |
| MsG0580024695.01.T01 | MTR_4g092700 | 65.714 | 70 | 23 | 1 | 29 | 97 | 157 | 226 | 6.63e-25 | 95.5 |
| MsG0580024695.01.T01 | MTR_2g104550 | 65.333 | 75 | 25 | 1 | 16 | 90 | 125 | 198 | 7.90e-25 | 95.1 |
| MsG0580024695.01.T01 | MTR_5g014560 | 55.172 | 87 | 33 | 1 | 13 | 93 | 108 | 194 | 4.01e-24 | 93.2 |
| MsG0580024695.01.T01 | MTR_2g010450 | 70.492 | 61 | 18 | 0 | 28 | 88 | 175 | 235 | 5.15e-24 | 93.6 |
| MsG0580024695.01.T01 | MTR_4g097940 | 56.818 | 88 | 31 | 2 | 1 | 85 | 127 | 210 | 6.33e-24 | 92.8 |
| MsG0580024695.01.T01 | MTR_0246s0020 | 54.651 | 86 | 36 | 1 | 10 | 92 | 175 | 260 | 1.26e-23 | 92.8 |
| MsG0580024695.01.T01 | MTR_0246s0020 | 54.651 | 86 | 36 | 1 | 10 | 92 | 175 | 260 | 1.35e-23 | 92.4 |
| MsG0580024695.01.T01 | MTR_4g097920 | 56.322 | 87 | 31 | 2 | 1 | 84 | 112 | 194 | 2.13e-23 | 91.3 |
| MsG0580024695.01.T01 | MTR_4g097920 | 56.322 | 87 | 31 | 2 | 1 | 84 | 127 | 209 | 2.25e-23 | 91.3 |
| MsG0580024695.01.T01 | MTR_6g047550 | 52.564 | 78 | 37 | 0 | 15 | 92 | 158 | 235 | 2.73e-22 | 87.8 |
| MsG0580024695.01.T01 | MTR_5g014640 | 51.136 | 88 | 41 | 1 | 2 | 89 | 128 | 213 | 4.97e-22 | 87.8 |
| MsG0580024695.01.T01 | MTR_0011s0260 | 60.000 | 65 | 26 | 0 | 25 | 89 | 178 | 242 | 9.55e-22 | 87.4 |
| MsG0580024695.01.T01 | MTR_0011s0210 | 60.938 | 64 | 25 | 0 | 25 | 88 | 178 | 241 | 1.18e-21 | 87.0 |
| MsG0580024695.01.T01 | MTR_0246s0050 | 48.837 | 86 | 42 | 1 | 1 | 84 | 120 | 205 | 5.79e-21 | 84.7 |
| MsG0580024695.01.T01 | MTR_4g098035 | 48.837 | 86 | 42 | 1 | 1 | 84 | 141 | 226 | 8.31e-21 | 84.7 |
| MsG0580024695.01.T01 | MTR_0250s0040 | 51.316 | 76 | 37 | 0 | 17 | 92 | 75 | 150 | 1.02e-20 | 83.6 |
| MsG0580024695.01.T01 | MTR_6g047570 | 52.000 | 75 | 36 | 0 | 18 | 92 | 147 | 221 | 1.96e-20 | 83.6 |
| MsG0580024695.01.T01 | MTR_2g104490 | 59.722 | 72 | 28 | 1 | 16 | 87 | 124 | 194 | 4.46e-20 | 82.4 |
| MsG0580024695.01.T01 | MTR_2g104490 | 59.722 | 72 | 28 | 1 | 16 | 87 | 124 | 194 | 4.58e-20 | 82.0 |
| MsG0580024695.01.T01 | MTR_8g009020 | 63.333 | 60 | 22 | 0 | 29 | 88 | 142 | 201 | 3.32e-19 | 80.1 |
| MsG0580024695.01.T01 | MTR_2g104560 | 49.254 | 67 | 34 | 0 | 24 | 90 | 48 | 114 | 5.44e-19 | 78.2 |
| MsG0580024695.01.T01 | MTR_4g067010 | 47.436 | 78 | 38 | 1 | 14 | 88 | 128 | 205 | 7.03e-19 | 79.3 |
| MsG0580024695.01.T01 | MTR_4g066460 | 49.412 | 85 | 38 | 1 | 2 | 86 | 132 | 211 | 1.01e-18 | 79.0 |
| MsG0580024695.01.T01 | MTR_4g009540 | 51.220 | 82 | 40 | 0 | 6 | 87 | 128 | 209 | 1.20e-18 | 78.6 |
| MsG0580024695.01.T01 | MTR_4g009540 | 51.220 | 82 | 40 | 0 | 6 | 87 | 128 | 209 | 1.30e-18 | 78.6 |
| MsG0580024695.01.T01 | MTR_4g066380 | 47.619 | 84 | 39 | 1 | 2 | 85 | 130 | 208 | 1.41e-18 | 78.6 |
| MsG0580024695.01.T01 | MTR_7g096350 | 58.065 | 62 | 25 | 1 | 30 | 90 | 355 | 416 | 2.08e-18 | 79.0 |
| MsG0580024695.01.T01 | MTR_7g080780 | 48.684 | 76 | 38 | 1 | 13 | 87 | 134 | 209 | 2.26e-18 | 77.8 |
| MsG0580024695.01.T01 | MTR_7g080780 | 48.684 | 76 | 38 | 1 | 13 | 87 | 147 | 222 | 2.55e-18 | 77.8 |
| MsG0580024695.01.T01 | MTR_2g104590 | 56.716 | 67 | 28 | 1 | 18 | 84 | 58 | 123 | 8.25e-18 | 75.1 |
| MsG0580024695.01.T01 | MTR_4g009110 | 59.677 | 62 | 25 | 0 | 30 | 91 | 174 | 235 | 1.04e-17 | 76.3 |
| MsG0580024695.01.T01 | MTR_8g009010 | 60.000 | 60 | 24 | 0 | 29 | 88 | 133 | 192 | 1.71e-17 | 75.5 |
| MsG0580024695.01.T01 | MTR_7g117670 | 53.571 | 56 | 26 | 0 | 30 | 85 | 402 | 457 | 6.16e-16 | 71.6 |
| MsG0580024695.01.T01 | MTR_1g072320 | 50.820 | 61 | 30 | 0 | 28 | 88 | 468 | 528 | 6.73e-16 | 71.6 |
| MsG0580024695.01.T01 | MTR_8g027495 | 50.847 | 59 | 29 | 0 | 30 | 88 | 458 | 516 | 1.33e-15 | 70.9 |
| MsG0580024695.01.T01 | MTR_8g069740 | 53.731 | 67 | 30 | 1 | 18 | 84 | 101 | 166 | 3.66e-15 | 68.6 |
| MsG0580024695.01.T01 | MTR_8g067280 | 45.833 | 72 | 39 | 0 | 12 | 83 | 444 | 515 | 5.00e-15 | 69.3 |
| MsG0580024695.01.T01 | MTR_8g024790 | 37.805 | 82 | 48 | 1 | 7 | 88 | 271 | 349 | 2.87e-14 | 67.0 |
| MsG0580024695.01.T01 | MTR_5g030430 | 51.852 | 54 | 26 | 0 | 30 | 83 | 493 | 546 | 4.06e-14 | 66.6 |
| MsG0580024695.01.T01 | MTR_8g024770 | 36.842 | 76 | 45 | 1 | 7 | 82 | 259 | 331 | 8.83e-13 | 62.8 |
| MsG0580024695.01.T01 | MTR_7g110810 | 44.118 | 68 | 38 | 0 | 15 | 82 | 197 | 264 | 9.01e-13 | 62.8 |
| MsG0580024695.01.T01 | MTR_2g104500 | 41.975 | 81 | 35 | 2 | 9 | 88 | 94 | 163 | 1.78e-11 | 58.5 |
| MsG0580024695.01.T01 | MTR_1g112680 | 42.647 | 68 | 39 | 0 | 23 | 90 | 310 | 377 | 2.30e-11 | 58.9 |
| MsG0580024695.01.T01 | MTR_2g104530 | 50.847 | 59 | 28 | 1 | 31 | 88 | 106 | 164 | 2.49e-11 | 58.2 |
| MsG0580024695.01.T01 | MTR_2g104650 | 55.556 | 45 | 20 | 0 | 30 | 74 | 94 | 138 | 5.70e-11 | 57.4 |
| MsG0580024695.01.T01 | MTR_8g098275 | 31.868 | 91 | 57 | 1 | 2 | 92 | 378 | 463 | 6.47e-11 | 57.4 |
| MsG0580024695.01.T01 | MTR_8g098275 | 31.868 | 91 | 57 | 1 | 2 | 92 | 285 | 370 | 6.57e-11 | 57.4 |
| MsG0580024695.01.T01 | MTR_8g098275 | 31.868 | 91 | 57 | 1 | 2 | 92 | 221 | 306 | 7.86e-11 | 57.4 |
| MsG0580024695.01.T01 | MTR_1g019240 | 46.774 | 62 | 33 | 0 | 25 | 86 | 90 | 151 | 8.35e-11 | 56.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024695.01.T01 | AT4G37850 | 60.494 | 81 | 28 | 1 | 5 | 85 | 131 | 207 | 9.97e-25 | 95.1 |
| MsG0580024695.01.T01 | AT4G37850 | 60.494 | 81 | 28 | 1 | 5 | 85 | 131 | 207 | 9.97e-25 | 95.1 |
| MsG0580024695.01.T01 | AT2G22750 | 69.118 | 68 | 18 | 1 | 15 | 79 | 108 | 175 | 1.06e-24 | 94.7 |
| MsG0580024695.01.T01 | AT2G22750 | 69.118 | 68 | 18 | 1 | 15 | 79 | 108 | 175 | 1.13e-24 | 94.7 |
| MsG0580024695.01.T01 | AT2G22750 | 69.118 | 68 | 18 | 1 | 15 | 79 | 136 | 203 | 1.41e-24 | 94.7 |
| MsG0580024695.01.T01 | AT2G22750 | 69.118 | 68 | 18 | 1 | 15 | 79 | 136 | 203 | 1.58e-24 | 94.7 |
| MsG0580024695.01.T01 | AT2G22750 | 69.118 | 68 | 18 | 1 | 15 | 79 | 132 | 199 | 1.58e-24 | 94.7 |
| MsG0580024695.01.T01 | AT2G22760 | 63.333 | 60 | 22 | 0 | 28 | 87 | 117 | 176 | 2.58e-19 | 80.1 |
| MsG0580024695.01.T01 | AT2G22770 | 68.421 | 57 | 18 | 0 | 29 | 85 | 131 | 187 | 2.94e-19 | 80.5 |
| MsG0580024695.01.T01 | AT2G22760 | 63.333 | 60 | 22 | 0 | 28 | 87 | 117 | 176 | 3.33e-19 | 79.7 |
| MsG0580024695.01.T01 | AT2G46510 | 47.297 | 74 | 39 | 0 | 12 | 85 | 377 | 450 | 9.53e-18 | 77.0 |
| MsG0580024695.01.T01 | AT1G01260 | 38.272 | 81 | 50 | 0 | 8 | 88 | 411 | 491 | 2.58e-15 | 70.1 |
| MsG0580024695.01.T01 | AT1G01260 | 38.272 | 81 | 50 | 0 | 8 | 88 | 411 | 491 | 2.58e-15 | 70.1 |
| MsG0580024695.01.T01 | AT1G01260 | 38.272 | 81 | 50 | 0 | 8 | 88 | 411 | 491 | 2.58e-15 | 70.1 |
| MsG0580024695.01.T01 | AT4G16430 | 40.476 | 84 | 46 | 1 | 4 | 87 | 298 | 377 | 4.95e-15 | 69.3 |
| MsG0580024695.01.T01 | AT1G32640 | 41.379 | 87 | 46 | 1 | 12 | 93 | 434 | 520 | 2.27e-14 | 67.4 |
| MsG0580024695.01.T01 | AT4G17880 | 50.980 | 51 | 25 | 0 | 30 | 80 | 416 | 466 | 1.01e-13 | 65.5 |
| MsG0580024695.01.T01 | AT5G46760 | 50.000 | 54 | 27 | 0 | 30 | 83 | 415 | 468 | 1.13e-13 | 65.5 |
| MsG0580024695.01.T01 | AT4G09820 | 39.726 | 73 | 44 | 0 | 15 | 87 | 348 | 420 | 1.80e-12 | 62.0 |
| MsG0580024695.01.T01 | AT2G16910 | 45.000 | 60 | 33 | 0 | 31 | 90 | 315 | 374 | 2.39e-12 | 61.6 |
| MsG0580024695.01.T01 | AT4G00870 | 45.283 | 53 | 29 | 0 | 31 | 83 | 250 | 302 | 1.58e-11 | 59.3 |
| MsG0580024695.01.T01 | AT5G57150 | 42.647 | 68 | 38 | 1 | 17 | 83 | 41 | 108 | 1.91e-11 | 58.2 |
| MsG0580024695.01.T01 | AT4G36930 | 43.478 | 69 | 39 | 0 | 26 | 94 | 197 | 265 | 1.97e-11 | 58.9 |
| MsG0580024695.01.T01 | AT5G57150 | 42.647 | 68 | 38 | 1 | 17 | 83 | 41 | 108 | 2.05e-11 | 58.2 |
| MsG0580024695.01.T01 | AT5G57150 | 42.647 | 68 | 38 | 1 | 17 | 83 | 40 | 107 | 2.31e-11 | 58.2 |
| MsG0580024695.01.T01 | AT5G57150 | 42.029 | 69 | 39 | 1 | 16 | 83 | 40 | 108 | 2.42e-11 | 58.2 |
| MsG0580024695.01.T01 | AT5G57150 | 42.647 | 68 | 38 | 1 | 17 | 83 | 40 | 107 | 2.47e-11 | 57.8 |
| MsG0580024695.01.T01 | AT4G00050 | 37.805 | 82 | 47 | 1 | 5 | 86 | 196 | 273 | 4.56e-11 | 57.8 |
| MsG0580024695.01.T01 | AT1G09530 | 40.789 | 76 | 41 | 1 | 7 | 82 | 328 | 399 | 5.57e-11 | 57.8 |
| MsG0580024695.01.T01 | AT1G09530 | 40.789 | 76 | 41 | 1 | 7 | 82 | 328 | 399 | 5.57e-11 | 57.8 |
| MsG0580024695.01.T01 | AT1G09530 | 40.789 | 76 | 41 | 1 | 7 | 82 | 328 | 399 | 5.57e-11 | 57.8 |
| MsG0580024695.01.T01 | AT1G09530 | 40.789 | 76 | 41 | 1 | 7 | 82 | 328 | 399 | 5.57e-11 | 57.8 |
| MsG0580024695.01.T01 | AT1G09530 | 40.789 | 76 | 41 | 1 | 7 | 82 | 328 | 399 | 5.57e-11 | 57.8 |
| MsG0580024695.01.T01 | AT1G09530 | 40.789 | 76 | 41 | 1 | 7 | 82 | 328 | 399 | 5.57e-11 | 57.8 |
| MsG0580024695.01.T01 | AT4G00050 | 37.805 | 82 | 47 | 1 | 5 | 86 | 196 | 273 | 7.72e-11 | 57.4 |
| MsG0580024695.01.T01 | AT1G63650 | 36.986 | 73 | 45 | 1 | 11 | 83 | 387 | 458 | 9.91e-11 | 57.0 |
| MsG0580024695.01.T01 | AT1G63650 | 36.986 | 73 | 45 | 1 | 11 | 83 | 387 | 458 | 9.91e-11 | 57.0 |
| MsG0580024695.01.T01 | AT1G63650 | 36.986 | 73 | 45 | 1 | 11 | 83 | 387 | 458 | 9.91e-11 | 57.0 |
Find 24 sgRNAs with CRISPR-Local
Find 53 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGTGATCTTGAGCATTTC+TGG | 0.145443 | 5:-8322359 | None:intergenic |
| ATGGATAAGGCTTCTGTATT+AGG | 0.248877 | 5:+8322556 | MsG0580024695.01.T01:CDS |
| CTCTCTTGAATATTGCGTTT+TGG | 0.303171 | 5:-8322316 | None:intergenic |
| TGGATAAGGCTTCTGTATTA+GGG | 0.314098 | 5:+8322557 | MsG0580024695.01.T01:CDS |
| ACTCCTTCCAGACTTGAAAA+AGG | 0.315242 | 5:+8322438 | MsG0580024695.01.T01:CDS |
| GACACTCTTGCCTCAACTTC+AGG | 0.353101 | 5:-8322786 | None:intergenic |
| CTAGTAGTGTGCATTGCTAT+TGG | 0.373914 | 5:+8322902 | MsG0580024695.01.T01:three_prime_UTR |
| TCAGACACCTCATCAAATTC+TGG | 0.375463 | 5:+8322709 | MsG0580024695.01.T01:three_prime_UTR |
| AGATTTGTACGTTGTTCCTT+TGG | 0.377524 | 5:-8322639 | None:intergenic |
| AGATGAGAGTCTCTATCTCT+TGG | 0.448727 | 5:-8322872 | None:intergenic |
| CATTTGGATGTAGATGGATA+AGG | 0.492545 | 5:+8322543 | MsG0580024695.01.T01:intron |
| ATATCATACCTCAGCAATGA+TGG | 0.498759 | 5:-8322946 | None:intergenic |
| ACCTCATCAAATTCTGGCTA+TGG | 0.514888 | 5:+8322715 | MsG0580024695.01.T01:three_prime_UTR |
| TTTCTTGAAGCTGTTTCACA+TGG | 0.520049 | 5:-8322591 | None:intergenic |
| GAAGTTCAGCCTAAGCGTGC+AGG | 0.528653 | 5:+8323236 | MsG0580024695.01.T01:three_prime_UTR |
| CACTCTTATGTTTCTCACAA+TGG | 0.534111 | 5:-8322833 | None:intergenic |
| TAGCTAGCTCCTGCACGCTT+AGG | 0.538929 | 5:-8323245 | None:intergenic |
| TAGGTCACTGCCTGAAGTTG+AGG | 0.613765 | 5:+8322776 | MsG0580024695.01.T01:three_prime_UTR |
| TATTGGAGGAAAAGAACCAA+AGG | 0.643739 | 5:+8322623 | MsG0580024695.01.T01:CDS |
| ACCATAGCCAGAATTTGATG+AGG | 0.651808 | 5:-8322716 | None:intergenic |
| ACTCACACCTCAAAACAAGT+AGG | 0.653322 | 5:+8322757 | MsG0580024695.01.T01:three_prime_UTR |
| GGATAAGGCTTCTGTATTAG+GGG | 0.656232 | 5:+8322558 | MsG0580024695.01.T01:CDS |
| AGGAACAACGTACAAATCTG+TGG | 0.661305 | 5:+8322643 | MsG0580024695.01.T01:CDS |
| TGACATAACCATCATTGCTG+AGG | 0.668356 | 5:+8322938 | MsG0580024695.01.T01:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAATGATACTAATTAA+TGG | + | Chr5:8322508-8322527 | MsG0580024695.01.T01:intron | 10.0% |
| !! | TAAATAACACTTATTTAAAA+TGG | + | Chr5:8323091-8323110 | MsG0580024695.01.T01:intron | 10.0% |
| !!! | TGATTTTTTAACATCAAAAT+AGG | + | Chr5:8323130-8323149 | MsG0580024695.01.T01:intron | 15.0% |
| !!! | ATAACACTTATTTAAAATGG+AGG | + | Chr5:8323094-8323113 | MsG0580024695.01.T01:intron | 20.0% |
| !!! | CACTTATATTTTTAAAACAG+TGG | - | Chr5:8322981-8323000 | None:intergenic | 20.0% |
| !!! | TAACACTTATTTAAAATGGA+GGG | + | Chr5:8323095-8323114 | MsG0580024695.01.T01:intron | 20.0% |
| ! | ATGGTTACTCATTAATCATT+TGG | + | Chr5:8322527-8322546 | MsG0580024695.01.T01:intron | 25.0% |
| ! | ATTAATCATTTGGATGTAGA+TGG | + | Chr5:8322537-8322556 | MsG0580024695.01.T01:intron | 25.0% |
| ! | TCAAGAAAAAGTGAAACTAT+TGG | + | Chr5:8322606-8322625 | MsG0580024695.01.T01:CDS | 25.0% |
| ! | TCCTTAGAAAACCAAAAAAA+GGG | + | Chr5:8322292-8322311 | MsG0580024695.01.T01:CDS | 25.0% |
| AGAAAAAGTGAAACTATTGG+AGG | + | Chr5:8322609-8322628 | MsG0580024695.01.T01:CDS | 30.0% | |
| GTCCTTAGAAAACCAAAAAA+AGG | + | Chr5:8322291-8322310 | MsG0580024695.01.T01:CDS | 30.0% | |
| GTTGAATCAATGTTCAACAT+TGG | - | Chr5:8322219-8322238 | None:intergenic | 30.0% | |
| ! | ATGATTAAAACCTTGCCTTT+TGG | - | Chr5:8322249-8322268 | None:intergenic | 30.0% |
| ! | ATGGTTATGTCAAGTTTTTG+TGG | - | Chr5:8322930-8322949 | None:intergenic | 30.0% |
| !! | AAAAGGCAAGGTTTTAATCA+TGG | + | Chr5:8322248-8322267 | MsG0580024695.01.T01:intron | 30.0% |
| !! | AAAGGCAAGGTTTTAATCAT+GGG | + | Chr5:8322249-8322268 | MsG0580024695.01.T01:intron | 30.0% |
| !! | GATTCAACTTTGAAACCAAA+AGG | + | Chr5:8322231-8322250 | MsG0580024695.01.T01:intron | 30.0% |
| !! | TACTTAGTTTGTCTATCTTC+TGG | + | Chr5:8323194-8323213 | MsG0580024695.01.T01:intron | 30.0% |
| !!! | AATTGAACCTTTTTCAAGTC+TGG | - | Chr5:8322448-8322467 | None:intergenic | 30.0% |
| !!! | TCCCTTTTTTTGGTTTTCTA+AGG | - | Chr5:8322296-8322315 | None:intergenic | 30.0% |
| AGATTTGTACGTTGTTCCTT+TGG | - | Chr5:8322642-8322661 | None:intergenic | 35.0% | |
| ATATCATACCTCAGCAATGA+TGG | - | Chr5:8322949-8322968 | None:intergenic | 35.0% | |
| ATGGATAAGGCTTCTGTATT+AGG | + | Chr5:8322556-8322575 | MsG0580024695.01.T01:CDS | 35.0% | |
| CACTCTTATGTTTCTCACAA+TGG | - | Chr5:8322836-8322855 | None:intergenic | 35.0% | |
| CATTTGGATGTAGATGGATA+AGG | + | Chr5:8322543-8322562 | MsG0580024695.01.T01:intron | 35.0% | |
| GGGAAATCTTTAACCTCAAA+GGG | + | Chr5:8322269-8322288 | MsG0580024695.01.T01:intron | 35.0% | |
| TATGTGATCTTGAGCATTTC+TGG | - | Chr5:8322362-8322381 | None:intergenic | 35.0% | |
| TATTGGAGGAAAAGAACCAA+AGG | + | Chr5:8322623-8322642 | MsG0580024695.01.T01:CDS | 35.0% | |
| TGGATAAGGCTTCTGTATTA+GGG | + | Chr5:8322557-8322576 | MsG0580024695.01.T01:CDS | 35.0% | |
| TGGGAAATCTTTAACCTCAA+AGG | + | Chr5:8322268-8322287 | MsG0580024695.01.T01:intron | 35.0% | |
| ! | CTCTCTTGAATATTGCGTTT+TGG | - | Chr5:8322319-8322338 | None:intergenic | 35.0% |
| ! | TTTCTTGAAGCTGTTTCACA+TGG | - | Chr5:8322594-8322613 | None:intergenic | 35.0% |
| !! | AACTTTGAAACCAAAAGGCA+AGG | + | Chr5:8322236-8322255 | MsG0580024695.01.T01:intron | 35.0% |
| ACCATAGCCAGAATTTGATG+AGG | - | Chr5:8322719-8322738 | None:intergenic | 40.0% | |
| ACTCACACCTCAAAACAAGT+AGG | + | Chr5:8322757-8322776 | MsG0580024695.01.T01:three_prime_UTR | 40.0% | |
| ACTCCTTCCAGACTTGAAAA+AGG | + | Chr5:8322438-8322457 | MsG0580024695.01.T01:CDS | 40.0% | |
| AGATGAGAGTCTCTATCTCT+TGG | - | Chr5:8322875-8322894 | None:intergenic | 40.0% | |
| AGGAACAACGTACAAATCTG+TGG | + | Chr5:8322643-8322662 | MsG0580024695.01.T01:CDS | 40.0% | |
| CTAGTAGTGTGCATTGCTAT+TGG | + | Chr5:8322902-8322921 | MsG0580024695.01.T01:three_prime_UTR | 40.0% | |
| GGATAAGGCTTCTGTATTAG+GGG | + | Chr5:8322558-8322577 | MsG0580024695.01.T01:CDS | 40.0% | |
| TCAGACACCTCATCAAATTC+TGG | + | Chr5:8322709-8322728 | MsG0580024695.01.T01:three_prime_UTR | 40.0% | |
| TCTTCTGGTACAAATGCAGA+TGG | + | Chr5:8323209-8323228 | MsG0580024695.01.T01:intron | 40.0% | |
| TGACATAACCATCATTGCTG+AGG | + | Chr5:8322938-8322957 | MsG0580024695.01.T01:three_prime_UTR | 40.0% | |
| ! | ACCTCATCAAATTCTGGCTA+TGG | + | Chr5:8322715-8322734 | MsG0580024695.01.T01:three_prime_UTR | 40.0% |
| !! | TGCGTTTTGGTCCCTTTTTT+TGG | - | Chr5:8322306-8322325 | None:intergenic | 40.0% |
| !!! | GAACCTTTTTCAAGTCTGGA+AGG | - | Chr5:8322444-8322463 | None:intergenic | 40.0% |
| !! | GGTTTTCTAAGGACCCTTTG+AGG | - | Chr5:8322285-8322304 | None:intergenic | 45.0% |
| !!! | GCAGTGACCTACTTGTTTTG+AGG | - | Chr5:8322767-8322786 | None:intergenic | 45.0% |
| GACACTCTTGCCTCAACTTC+AGG | - | Chr5:8322789-8322808 | None:intergenic | 50.0% | |
| TAGGTCACTGCCTGAAGTTG+AGG | + | Chr5:8322776-8322795 | MsG0580024695.01.T01:three_prime_UTR | 50.0% | |
| GAAGTTCAGCCTAAGCGTGC+AGG | + | Chr5:8323236-8323255 | MsG0580024695.01.T01:three_prime_UTR | 55.0% | |
| TAGCTAGCTCCTGCACGCTT+AGG | - | Chr5:8323248-8323267 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 8322219 | 8323359 | 8322219 | ID=MsG0580024695.01;Name=MsG0580024695.01 |
| Chr5 | mRNA | 8322219 | 8323359 | 8322219 | ID=MsG0580024695.01.T01;Parent=MsG0580024695.01;Name=MsG0580024695.01.T01;_AED=0.35;_eAED=0.35;_QI=0|0.66|0.5|1|0|0|4|416|97 |
| Chr5 | exon | 8322219 | 8322221 | 8322219 | ID=MsG0580024695.01.T01:exon:26278;Parent=MsG0580024695.01.T01 |
| Chr5 | exon | 8322289 | 8322459 | 8322289 | ID=MsG0580024695.01.T01:exon:26279;Parent=MsG0580024695.01.T01 |
| Chr5 | exon | 8322556 | 8322959 | 8322556 | ID=MsG0580024695.01.T01:exon:26280;Parent=MsG0580024695.01.T01 |
| Chr5 | exon | 8323228 | 8323359 | 8323228 | ID=MsG0580024695.01.T01:exon:26281;Parent=MsG0580024695.01.T01 |
| Chr5 | CDS | 8322219 | 8322221 | 8322219 | ID=MsG0580024695.01.T01:cds;Parent=MsG0580024695.01.T01 |
| Chr5 | CDS | 8322289 | 8322459 | 8322289 | ID=MsG0580024695.01.T01:cds;Parent=MsG0580024695.01.T01 |
| Chr5 | CDS | 8322556 | 8322675 | 8322556 | ID=MsG0580024695.01.T01:cds;Parent=MsG0580024695.01.T01 |
| Chr5 | three_prime_UTR | 8322676 | 8322959 | 8322676 | ID=MsG0580024695.01.T01:three_prime_utr;Parent=MsG0580024695.01.T01 |
| Chr5 | three_prime_UTR | 8323228 | 8323359 | 8323228 | ID=MsG0580024695.01.T01:three_prime_utr;Parent=MsG0580024695.01.T01 |
| Gene Sequence |
| Protein sequence |
