AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000218.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000218.01.T01 MTR_1g021150 100.000 131 0 0 1 131 1 131 3.50e-95 271
MsG0180000218.01.T01 MTR_3g062450 93.130 131 9 0 1 131 1 131 8.28e-91 260
MsG0180000218.01.T01 MTR_7g116940 93.130 131 9 0 1 131 1 131 3.60e-90 258
MsG0180000218.01.T01 MTR_5g075580 92.366 131 10 0 1 131 1 131 3.64e-90 258
MsG0180000218.01.T01 MTR_8g071040 91.603 131 11 0 1 131 1 131 6.24e-89 255
MsG0180000218.01.T01 MTR_4g073240 90.076 131 13 0 1 131 1 131 5.85e-88 253
MsG0180000218.01.T01 MTR_7g116940 88.406 138 9 1 1 131 1 138 4.19e-87 251
MsG0180000218.01.T01 MTR_1g021150 100.000 109 0 0 23 131 31 139 1.76e-78 229
MsG0180000218.01.T01 MTR_5g075580 93.137 102 7 0 30 131 1 102 6.21e-70 206
MsG0180000218.01.T01 MTR_7g116940 89.908 109 11 0 1 109 1 109 1.77e-69 206
MsG0180000218.01.T01 MTR_4g073240 90.196 102 10 0 30 131 1 102 3.51e-67 199
MsG0180000218.01.T01 MTR_8g085690 53.077 130 61 0 2 131 23 152 1.50e-49 156
MsG0180000218.01.T01 MTR_8g468530 48.462 130 67 0 2 131 21 150 6.06e-43 140
MsG0180000218.01.T01 MTR_4g108080 47.692 130 68 0 2 131 5 134 5.50e-42 137
MsG0180000218.01.T01 MTR_2g078010 47.656 128 67 0 4 131 8 135 2.42e-40 132
MsG0180000218.01.T01 MTR_2g078010 47.656 128 67 0 4 131 8 135 3.13e-40 132
MsG0180000218.01.T01 MTR_4g073240 87.879 66 8 0 66 131 4 69 4.90e-39 127
MsG0180000218.01.T01 MTR_3g098780 50.781 128 61 2 5 130 6 133 2.04e-36 124
MsG0180000218.01.T01 MTR_2g078010 42.958 142 67 1 4 131 8 149 3.62e-36 122
MsG0180000218.01.T01 MTR_3g098780 50.781 128 61 2 5 130 30 157 3.97e-36 124
MsG0180000218.01.T01 MTR_1g095510 43.382 136 76 1 3 137 43 178 2.49e-34 119
MsG0180000218.01.T01 MTR_4g108080 48.571 105 54 0 2 106 5 109 4.90e-34 115
MsG0180000218.01.T01 MTR_4g076200 40.876 137 81 0 4 140 35 171 1.26e-33 116
MsG0180000218.01.T01 MTR_1g095510 44.538 119 66 0 19 137 6 124 3.99e-33 114
MsG0180000218.01.T01 MTR_5g009020 39.416 137 83 0 4 140 35 171 3.99e-32 112
MsG0180000218.01.T01 MTR_4g076200 42.857 119 68 0 22 140 12 130 4.61e-32 111
MsG0180000218.01.T01 MTR_1g095510 48.649 111 56 1 3 112 43 153 1.93e-31 110
MsG0180000218.01.T01 MTR_3g110110 41.406 128 72 2 5 129 7 134 6.82e-31 108
MsG0180000218.01.T01 MTR_2g078010 46.535 101 54 0 4 104 8 108 6.96e-30 105
MsG0180000218.01.T01 MTR_4g108080 50.538 93 46 0 39 131 42 134 2.71e-29 104
MsG0180000218.01.T01 MTR_4g094872 40.146 137 75 2 1 130 4 140 2.98e-28 102
MsG0180000218.01.T01 MTR_4g063490 34.965 143 79 2 15 143 18 160 2.09e-27 100
MsG0180000218.01.T01 MTR_5g019480 38.931 131 76 3 5 134 36 163 4.98e-26 97.4
MsG0180000218.01.T01 MTR_5g019480 38.931 131 76 3 5 134 33 160 5.62e-26 97.1
MsG0180000218.01.T01 MTR_5g016630 37.226 137 79 2 1 130 4 140 3.09e-25 94.7
MsG0180000218.01.T01 MTR_5g019480 42.056 107 60 2 28 134 8 112 1.33e-24 92.4
MsG0180000218.01.T01 MTR_7g087590 35.461 141 87 1 4 140 13 153 7.77e-24 93.6
MsG0180000218.01.T01 MTR_2g096690 36.719 128 67 2 15 128 18 145 1.02e-23 90.9
MsG0180000218.01.T01 MTR_2g096690 38.983 118 58 2 15 118 18 135 3.05e-23 89.7
MsG0180000218.01.T01 MTR_8g028920 35.455 110 69 2 26 133 25 134 2.13e-21 85.5
MsG0180000218.01.T01 MTR_4g106690 35.185 108 68 2 26 131 25 132 1.92e-19 80.5
MsG0180000218.01.T01 MTR_8g076490 40.777 103 59 2 1 102 15 116 2.69e-19 79.3
MsG0180000218.01.T01 MTR_8g028920 37.895 95 57 2 43 135 3 97 6.09e-19 78.2
MsG0180000218.01.T01 MTR_8g098595 36.364 99 61 2 39 135 23 121 1.29e-18 77.8
MsG0180000218.01.T01 MTR_4g121960 34.188 117 71 3 2 114 11 125 1.13e-17 77.8
MsG0180000218.01.T01 MTR_5g021260 38.889 108 60 3 1 107 15 117 3.59e-17 73.9
MsG0180000218.01.T01 MTR_2g096690 37.374 99 48 2 15 99 18 116 2.47e-16 70.5
MsG0180000218.01.T01 MTR_8g023380 34.188 117 68 3 4 115 8 120 4.15e-16 72.8
MsG0180000218.01.T01 MTR_7g451800 36.066 122 68 3 4 115 38 159 8.01e-16 72.8
MsG0180000218.01.T01 MTR_7g047620 36.066 122 68 3 4 115 38 159 8.01e-16 72.8
MsG0180000218.01.T01 MTR_7g047570 36.066 122 68 3 4 115 38 159 2.01e-15 72.0
MsG0180000218.01.T01 MTR_7g451770 36.066 122 68 3 4 115 38 159 2.01e-15 72.0
MsG0180000218.01.T01 MTR_7g023760 30.081 123 76 3 3 115 90 212 1.60e-13 66.6
MsG0180000218.01.T01 MTR_0274s0030 30.894 123 75 3 3 115 113 235 3.82e-13 65.5
MsG0180000218.01.T01 MTR_4g020620 32.520 123 73 3 3 115 628 750 6.97e-13 65.1
MsG0180000218.01.T01 MTR_4g020620 32.520 123 73 3 3 115 570 692 7.75e-13 65.1
MsG0180000218.01.T01 MTR_4g086440 32.787 122 72 3 4 115 37 158 1.09e-12 64.3
MsG0180000218.01.T01 MTR_4g088835 32.787 122 72 3 4 115 672 793 1.35e-12 64.3
MsG0180000218.01.T01 MTR_2g013650 31.707 123 74 3 3 115 681 803 3.28e-12 63.2
MsG0180000218.01.T01 MTR_1g092465 32.520 123 67 5 3 115 241 357 1.89e-11 60.8
MsG0180000218.01.T01 MTR_1g112730 32.609 92 52 3 34 115 886 977 3.89e-11 60.1
MsG0180000218.01.T01 MTR_2g079270 29.268 123 77 3 3 115 306 428 4.79e-11 59.7
MsG0180000218.01.T01 MTR_1g092460 27.642 123 79 3 3 115 176 298 5.31e-11 59.7
MsG0180000218.01.T01 MTR_1g073600 29.167 72 50 1 33 103 25 96 6.12e-11 57.0
MsG0180000218.01.T01 MTR_0332s0040 33.333 111 63 4 35 135 188 297 7.66e-11 59.3
MsG0180000218.01.T01 MTR_1g092440 33.696 92 51 3 34 115 411 502 9.62e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000218.01.T01 AT5G53300 93.130 131 9 0 1 131 1 131 1.41e-90 259
MsG0180000218.01.T01 AT5G53300 93.130 131 9 0 1 131 1 131 1.41e-90 259
MsG0180000218.01.T01 AT5G53300 93.130 131 9 0 1 131 1 131 1.41e-90 259
MsG0180000218.01.T01 AT4G27960 93.130 131 9 0 1 131 1 131 1.53e-90 259
MsG0180000218.01.T01 AT5G41700 92.366 131 10 0 1 131 1 131 2.46e-90 259
MsG0180000218.01.T01 AT5G41700 92.366 131 10 0 1 131 1 131 2.46e-90 259
MsG0180000218.01.T01 AT5G41700 92.366 131 10 0 1 131 1 131 2.46e-90 259
MsG0180000218.01.T01 AT1G64230 91.603 131 11 0 1 131 1 131 4.30e-90 258
MsG0180000218.01.T01 AT1G64230 91.603 131 11 0 1 131 1 131 4.30e-90 258
MsG0180000218.01.T01 AT4G27960 93.130 131 9 0 1 131 31 161 7.02e-90 259
MsG0180000218.01.T01 AT5G56150 90.076 131 13 0 1 131 1 131 2.16e-88 254
MsG0180000218.01.T01 AT3G08690 90.076 131 13 0 1 131 1 131 1.03e-87 252
MsG0180000218.01.T01 AT3G08690 90.076 131 13 0 1 131 1 131 1.03e-87 252
MsG0180000218.01.T01 AT5G41700 90.909 132 11 1 1 131 1 132 2.29e-87 251
MsG0180000218.01.T01 AT2G16740 87.023 131 17 0 1 131 1 131 8.81e-86 248
MsG0180000218.01.T01 AT1G64230 85.000 140 12 1 1 131 1 140 1.60e-85 247
MsG0180000218.01.T01 AT1G64230 68.786 173 12 1 1 131 1 173 6.43e-81 237
MsG0180000218.01.T01 AT1G64230 68.786 173 12 1 1 131 1 173 6.43e-81 237
MsG0180000218.01.T01 AT3G08700 78.030 132 28 1 1 131 1 132 3.67e-75 221
MsG0180000218.01.T01 AT3G08700 78.030 132 28 1 1 131 1 132 3.67e-75 221
MsG0180000218.01.T01 AT5G41700 91.346 104 9 0 1 104 1 104 1.26e-69 206
MsG0180000218.01.T01 AT5G53300 88.991 109 10 1 1 107 1 109 8.99e-69 203
MsG0180000218.01.T01 AT5G56150 89.320 103 11 0 1 103 1 103 2.07e-67 200
MsG0180000218.01.T01 AT3G13550 50.000 130 65 0 2 131 37 166 1.25e-47 152
MsG0180000218.01.T01 AT5G62540 52.308 130 62 0 2 131 5 134 1.09e-45 146
MsG0180000218.01.T01 AT1G14400 48.462 130 67 0 2 131 5 134 1.12e-42 139
MsG0180000218.01.T01 AT1G14400 48.462 130 67 0 2 131 5 134 1.12e-42 139
MsG0180000218.01.T01 AT3G13550 50.877 114 56 0 2 115 37 150 1.90e-42 139
MsG0180000218.01.T01 AT2G02760 47.692 130 68 0 2 131 5 134 3.16e-42 137
MsG0180000218.01.T01 AT2G02760 47.692 130 68 0 2 131 5 134 3.16e-42 137
MsG0180000218.01.T01 AT2G02760 47.692 130 68 0 2 131 5 134 3.16e-42 137
MsG0180000218.01.T01 AT2G02760 47.692 130 68 0 2 131 5 134 3.16e-42 137
MsG0180000218.01.T01 AT1G16890 49.219 128 65 0 4 131 8 135 1.25e-41 136
MsG0180000218.01.T01 AT1G78870 48.438 128 66 0 4 131 8 135 1.06e-40 134
MsG0180000218.01.T01 AT1G36340 50.000 130 64 1 2 131 9 137 3.42e-40 132
MsG0180000218.01.T01 AT1G36340 50.000 130 64 1 2 131 9 137 3.42e-40 132
MsG0180000218.01.T01 AT1G16890 46.715 137 64 1 4 131 8 144 9.23e-39 129
MsG0180000218.01.T01 AT1G16890 53.000 100 47 0 32 131 3 102 3.93e-35 118
MsG0180000218.01.T01 AT1G78870 53.000 100 47 0 32 131 3 102 4.48e-35 118
MsG0180000218.01.T01 AT5G50870 48.800 125 62 2 5 127 6 130 5.10e-34 118
MsG0180000218.01.T01 AT1G78870 52.475 101 47 1 32 131 3 103 2.94e-33 114
MsG0180000218.01.T01 AT5G50870 50.862 116 55 2 5 118 6 121 7.44e-33 115
MsG0180000218.01.T01 AT3G20060 39.416 137 83 0 4 140 39 175 4.67e-31 110
MsG0180000218.01.T01 AT5G25760 41.406 128 72 2 5 129 7 134 4.68e-31 109
MsG0180000218.01.T01 AT5G25760 41.406 128 72 2 5 129 7 134 4.68e-31 109
MsG0180000218.01.T01 AT1G50490 40.146 137 82 0 4 140 38 174 6.57e-31 109
MsG0180000218.01.T01 AT1G78870 46.667 105 56 0 4 108 8 112 6.83e-31 107
MsG0180000218.01.T01 AT3G24515 42.657 143 69 3 5 134 10 152 5.69e-30 112
MsG0180000218.01.T01 AT3G20060 40.800 125 72 1 16 140 8 130 8.25e-30 105
MsG0180000218.01.T01 AT3G57870 41.606 137 73 3 1 130 5 141 1.31e-28 103
MsG0180000218.01.T01 AT2G32790 45.255 137 66 4 2 133 30 162 2.37e-27 100
MsG0180000218.01.T01 AT3G24515 37.059 170 69 4 3 134 8 177 4.42e-27 104
MsG0180000218.01.T01 AT3G55380 36.296 135 72 2 15 135 19 153 1.87e-26 98.2
MsG0180000218.01.T01 AT4G36800 39.394 132 74 5 5 134 34 161 1.99e-25 95.9
MsG0180000218.01.T01 AT4G36800 39.394 132 74 5 5 134 34 161 1.99e-25 95.9
MsG0180000218.01.T01 AT5G05080 39.024 123 75 0 4 126 13 135 9.34e-25 95.9
MsG0180000218.01.T01 AT5G05080 39.024 123 75 0 4 126 13 135 9.34e-25 95.9
MsG0180000218.01.T01 AT5G05080 39.024 123 75 0 4 126 13 135 9.34e-25 95.9
MsG0180000218.01.T01 AT5G05080 39.024 123 75 0 4 126 13 135 9.34e-25 95.9
MsG0180000218.01.T01 AT5G59300 35.556 135 73 2 15 135 18 152 3.10e-24 92.4
MsG0180000218.01.T01 AT3G46460 34.815 135 74 2 15 135 18 152 5.54e-24 91.7
MsG0180000218.01.T01 AT2G46030 35.507 138 86 3 1 136 1 137 5.77e-23 89.4
MsG0180000218.01.T01 AT2G46030 35.507 138 86 3 1 136 1 137 5.77e-23 89.4
MsG0180000218.01.T01 AT2G46030 35.507 138 86 3 1 136 73 209 7.68e-23 90.9
MsG0180000218.01.T01 AT2G46030 38.053 113 68 2 26 136 28 140 1.28e-22 88.6
MsG0180000218.01.T01 AT2G46030 38.053 113 68 2 26 136 28 140 1.28e-22 88.6
MsG0180000218.01.T01 AT2G18600 35.938 128 77 4 5 130 35 159 8.07e-22 86.7
MsG0180000218.01.T01 AT2G18600 35.938 128 77 4 5 130 35 159 8.07e-22 86.7
MsG0180000218.01.T01 AT1G63800 41.237 97 55 2 39 133 38 134 1.60e-21 85.9
MsG0180000218.01.T01 AT1G63800 40.404 99 57 2 39 135 23 121 1.67e-21 85.5
MsG0180000218.01.T01 AT5G41340 36.364 110 68 2 26 133 25 134 1.75e-21 85.9
MsG0180000218.01.T01 AT3G17000 36.752 117 68 3 2 114 12 126 1.76e-19 82.8
MsG0180000218.01.T01 AT3G55380 37.719 114 55 3 15 112 19 132 3.11e-19 80.1
MsG0180000218.01.T01 AT5G41340 38.710 93 55 2 45 135 9 101 7.67e-19 78.2
MsG0180000218.01.T01 AT1G75440 39.815 108 59 3 1 107 15 117 2.90e-18 76.6
MsG0180000218.01.T01 AT1G45050 38.835 103 61 2 1 102 15 116 9.59e-18 75.5
MsG0180000218.01.T01 AT5G42990 39.806 103 60 2 1 102 15 116 1.39e-17 75.1
MsG0180000218.01.T01 AT1G17280 35.043 117 67 3 4 115 8 120 3.56e-17 75.5
MsG0180000218.01.T01 AT1G17280 35.043 117 67 3 4 115 8 120 3.56e-17 75.5
MsG0180000218.01.T01 AT1G17280 35.043 117 67 3 4 115 8 120 3.56e-17 75.5
MsG0180000218.01.T01 AT1G17280 35.043 117 67 3 4 115 8 120 3.56e-17 75.5
MsG0180000218.01.T01 AT1G17280 35.043 117 67 3 4 115 8 120 3.56e-17 75.5
MsG0180000218.01.T01 AT1G17280 35.043 117 67 3 4 115 8 120 3.56e-17 75.5
MsG0180000218.01.T01 AT1G17280 35.043 117 67 3 4 115 8 120 3.56e-17 75.5
MsG0180000218.01.T01 AT1G17280 35.043 117 67 3 4 115 8 120 3.56e-17 75.5
MsG0180000218.01.T01 AT4G36410 37.037 108 62 3 1 107 15 117 5.75e-17 73.6
MsG0180000218.01.T01 AT5G50430 32.847 137 82 4 4 134 8 140 5.97e-17 75.1
MsG0180000218.01.T01 AT5G50430 32.847 137 82 4 4 134 8 140 5.97e-17 75.1
MsG0180000218.01.T01 AT1G17280 32.520 123 68 3 4 115 8 126 7.73e-16 72.0
MsG0180000218.01.T01 AT3G46460 31.373 102 57 1 47 135 9 110 8.88e-16 69.3
MsG0180000218.01.T01 AT3G46460 31.373 102 57 1 47 135 9 110 8.88e-16 69.3

Find 71 sgRNAs with CRISPR-Local

Find 301 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTACCTTTGGTGGCTTAAA+TGG 0.184645 1:-3007721 None:intergenic
AACCTTGGAGATGGAATCTT+AGG 0.258527 1:-3005213 None:intergenic
CTCCCATTGCTGTTGATGTT+AGG 0.317472 1:-3008507 None:intergenic
ATAAAACTTGGTTGTTGGTT+TGG 0.323051 1:-3009363 None:intergenic
GCGTCATTGTTCTATTATAT+AGG 0.361002 1:+3009420 MsG0180000218.01.T01:three_prime_UTR
TAAAACTTGGTTGTTGGTTT+GGG 0.363426 1:-3009362 None:intergenic
TTGTACATGTGGGCAATATC+AGG 0.375872 1:-3009111 None:intergenic
TCAGGCACCAAAGGATCATC+TGG 0.377413 1:-3009093 None:intergenic
CCTCCTGTGTCTTGCAGTGC+TGG 0.380892 1:+3006597 MsG0180000218.01.T01:CDS
GGTGGCTTAAATGGATAATC+TGG 0.389530 1:-3007712 None:intergenic
TGATTTGAACATATAGATAA+TGG 0.409991 1:-3009509 None:intergenic
GTCGGATAAAACTTGGTTGT+TGG 0.415903 1:-3009368 None:intergenic
AAGTTCTGTTAGCGAGAGAA+AGG 0.423440 1:-3005185 None:intergenic
TGAAACAGGTCTTCACCAAC+AGG 0.427366 1:-3007613 None:intergenic
TCCCATTGCTGTTGATGTTA+GGG 0.427658 1:-3008506 None:intergenic
TAGTAGCTTGCCAATGAAAC+AGG 0.428793 1:-3007627 None:intergenic
ACATATAGATAATGGTATAT+AGG 0.430215 1:-3009501 None:intergenic
TACTAGATAGTTACCTTTGG+TGG 0.430453 1:-3007730 None:intergenic
TGATATAGTGATTAATATAG+TGG 0.434916 1:-3009446 None:intergenic
TCCAAACCCAGATGATCCTT+TGG 0.446078 1:+3009086 MsG0180000218.01.T01:CDS
ATTCCACTACATAAATTAAA+CGG 0.446686 1:+3009398 MsG0180000218.01.T01:three_prime_UTR
ATAAATGCTTGTGGTTCTAA+AGG 0.456889 1:+3009198 MsG0180000218.01.T01:three_prime_UTR
GGTATATAGGTTATGTAGTA+AGG 0.460900 1:-3009488 None:intergenic
ATGAGACTACTGCCCGGTCT+TGG 0.466598 1:+3009150 MsG0180000218.01.T01:CDS
ACCAAAGGATCATCTGGGTT+TGG 0.469354 1:-3009087 None:intergenic
TTGGTGAAGACCTGTTTCAT+TGG 0.470566 1:+3007617 MsG0180000218.01.T01:CDS
TCACTTAGTCGGATAAAACT+TGG 0.471898 1:-3009375 None:intergenic
ACGCATTACTAAGGAGTTGA+AGG 0.472891 1:+3006560 MsG0180000218.01.T01:CDS
ACCCTAACATCAACAGCAAT+GGG 0.488484 1:+3008505 MsG0180000218.01.T01:CDS
TCATTGGCAAGCTACTATCA+TGG 0.489308 1:+3007633 MsG0180000218.01.T01:CDS
CATATTTCTGAGTCCAAGAC+CGG 0.489374 1:-3009163 None:intergenic
CCGGGCAGTAGTCTCATACT+TGG 0.490655 1:-3009144 None:intergenic
GGCCTCAAAACGCATTACTA+AGG 0.503308 1:+3006551 MsG0180000218.01.T01:CDS
TTCATTAGGTTGAACTGCAA+TGG 0.505699 1:+3006530 MsG0180000218.01.T01:intron
ACGCCGTTTAATTTATGTAG+TGG 0.509779 1:-3009401 None:intergenic
TGTAGTGGAATTCACTTAGT+CGG 0.514363 1:-3009386 None:intergenic
AGGAATACACCACCAGCATA+AGG 0.516668 1:-3007670 None:intergenic
TATACTCATGCAGGCCCTGT+TGG 0.522486 1:+3007598 MsG0180000218.01.T01:intron
GCTTGTCAGTCTTGTACATG+TGG 0.529651 1:-3009122 None:intergenic
ACATGGTAGAAACTCGACTT+AGG 0.539690 1:-3009532 None:intergenic
TCCTGCTCTTACTGTTTCGA+AGG 0.541092 1:+3008563 MsG0180000218.01.T01:CDS
ATCGAAGCAAACCTTGGAGA+TGG 0.543129 1:-3005222 None:intergenic
CACCCTAACATCAACAGCAA+TGG 0.544450 1:+3008504 MsG0180000218.01.T01:CDS
CATTGGCAAGCTACTATCAT+GGG 0.548045 1:+3007634 MsG0180000218.01.T01:CDS
GCAGAGAGCAAATTGACAGC+AGG 0.555230 1:-3009056 None:intergenic
GCAAGCTACTATCATGGGAC+CGG 0.562370 1:+3007639 MsG0180000218.01.T01:CDS
ACCTTGGAGATGGAATCTTA+GGG 0.563827 1:-3005212 None:intergenic
ACCCTAAGATTCCATCTCCA+AGG 0.564855 1:+3005211 MsG0180000218.01.T01:five_prime_UTR
AGTTCTGTTAGCGAGAGAAA+GGG 0.567493 1:-3005184 None:intergenic
GGCTTAAATGGATAATCTGG+TGG 0.570933 1:-3007709 None:intergenic
ACCTTCGAAACAGTAAGAGC+AGG 0.586563 1:-3008564 None:intergenic
CCGGCAGACAGTCCTTATGC+TGG 0.594140 1:+3007658 MsG0180000218.01.T01:CDS
GTGGGAAGTGAATGGTCACT+AGG 0.600222 1:-3007690 None:intergenic
CCAGCATAAGGACTGTCTGC+CGG 0.604386 1:-3007658 None:intergenic
CATTGCTGTTGATGTTAGGG+TGG 0.612271 1:-3008503 None:intergenic
TGGGCAATATCAGGCACCAA+AGG 0.612823 1:-3009102 None:intergenic
TTATCCATTTAAGCCACCAA+AGG 0.622832 1:+3007717 MsG0180000218.01.T01:CDS
GCAGACAGTCCTTATGCTGG+TGG 0.624021 1:+3007661 MsG0180000218.01.T01:CDS
GTTATAGACTAGGCAGAACA+AGG 0.627411 1:-3009598 None:intergenic
ATAATCTGGTGGGAAGTGAA+TGG 0.636084 1:-3007698 None:intergenic
GCTTAAATGGATAATCTGGT+GGG 0.637843 1:-3007708 None:intergenic
CTTGTCAGTCTTGTACATGT+GGG 0.640047 1:-3009121 None:intergenic
CAGGCACCAAAGGATCATCT+GGG 0.640642 1:-3009092 None:intergenic
TTGACATTCTGAAAGAGCAG+TGG 0.642055 1:+3008538 MsG0180000218.01.T01:CDS
CCAAGTATGAGACTACTGCC+CGG 0.645693 1:+3009144 MsG0180000218.01.T01:CDS
TGAACTAGCATAAATGCTTG+TGG 0.646131 1:+3009189 MsG0180000218.01.T01:exon
ATACCAGCACTGCAAGACAC+AGG 0.653347 1:-3006600 None:intergenic
CCAGCACTGCAAGACACAGG+AGG 0.655706 1:-3006597 None:intergenic
ATATTTCTGAGTCCAAGACC+GGG 0.658098 1:-3009162 None:intergenic
CAGCACTGCAAGACACAGGA+GGG 0.671340 1:-3006596 None:intergenic
GAAACAGGTCTTCACCAACA+GGG 0.724000 1:-3007612 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAAAAACTATTTGAT+GGG + Chr1:3007243-3007262 MsG0180000218.01.T01:intron 10.0%
!!! AATTTTGTAAAATTTTGAAA+AGG + Chr1:3005435-3005454 MsG0180000218.01.T01:intron 10.0%
!!! TATATTTTTTGTTATAGAAA+TGG + Chr1:3005700-3005719 MsG0180000218.01.T01:intron 10.0%
!! ATCTATACAACAAATATTAA+AGG - Chr1:3008282-3008301 None:intergenic 15.0%
!! CAAAATTAAAAACTATTTGA+TGG + Chr1:3007242-3007261 MsG0180000218.01.T01:intron 15.0%
!! GTGATATTTATATATGATTA+CGG + Chr1:3005953-3005972 MsG0180000218.01.T01:intron 15.0%
!! TATAATATATAAAGATAACG+AGG - Chr1:3007582-3007601 None:intergenic 15.0%
!! TGATATTTATATATGATTAC+GGG + Chr1:3005954-3005973 MsG0180000218.01.T01:intron 15.0%
!! TTATATTTCGTTATAATTGT+GGG + Chr1:3006170-3006189 MsG0180000218.01.T01:intron 15.0%
!! TTCACTTTAAATTAAGTAAA+TGG - Chr1:3006327-3006346 None:intergenic 15.0%
!!! CATCAAATAGTTTTTAATTT+TGG - Chr1:3007244-3007263 None:intergenic 15.0%
!!! TAAAATTTTGAAAAGGATTA+GGG + Chr1:3005442-3005461 MsG0180000218.01.T01:intron 15.0%
!!! TATTTCATTTTCTATACTTT+TGG + Chr1:3008798-3008817 MsG0180000218.01.T01:intron 15.0%
!!! TTGTTTGAAAATAATGTTTT+TGG + Chr1:3008418-3008437 MsG0180000218.01.T01:intron 15.0%
!! AAAAAAGTAACATGTTCTTA+TGG + Chr1:3006706-3006725 MsG0180000218.01.T01:intron 20.0%
!! AAACTATTGCTTAAAATCTA+TGG + Chr1:3008757-3008776 MsG0180000218.01.T01:intron 20.0%
!! AACAGAATTAAGTTTATTAC+AGG - Chr1:3006404-3006423 None:intergenic 20.0%
!! AGTTATAAATAACATGGAAT+GGG + Chr1:3006350-3006369 MsG0180000218.01.T01:intron 20.0%
!! ATATAACATGTAACTTAAGT+CGG - Chr1:3006156-3006175 None:intergenic 20.0%
!! ATGATTCAACAAAGAAAATA+TGG - Chr1:3006772-3006791 None:intergenic 20.0%
!! ATTCCACTACATAAATTAAA+CGG + Chr1:3009398-3009417 MsG0180000218.01.T01:three_prime_UTR 20.0%
!! ATTGAAATCAATATGTACTT+GGG + Chr1:3007927-3007946 MsG0180000218.01.T01:intron 20.0%
!! GAATTGAGTTATAAATAACA+TGG + Chr1:3006344-3006363 MsG0180000218.01.T01:intron 20.0%
!! GTTATATTTCGTTATAATTG+TGG + Chr1:3006169-3006188 MsG0180000218.01.T01:intron 20.0%
!! TATTGAAATCAATATGTACT+TGG + Chr1:3007926-3007945 MsG0180000218.01.T01:intron 20.0%
!! TGATATAGTGATTAATATAG+TGG - Chr1:3009449-3009468 None:intergenic 20.0%
!! TGATTTGAACATATAGATAA+TGG - Chr1:3009512-3009531 None:intergenic 20.0%
!! TTTATATATTATACTCATGC+AGG + Chr1:3007589-3007608 MsG0180000218.01.T01:intron 20.0%
!! TTTGTCTTAAATTGTTCATT+AGG + Chr1:3006516-3006535 MsG0180000218.01.T01:intron 20.0%
!!! AACTTAATTCTGTTTTGAAA+TGG + Chr1:3006410-3006429 MsG0180000218.01.T01:intron 20.0%
!!! ACATATAGATAATGGTATAT+AGG - Chr1:3009504-3009523 None:intergenic 20.0%
!!! AGTGAAAAAAATGTTGTTTT+GGG + Chr1:3009265-3009284 MsG0180000218.01.T01:three_prime_UTR 20.0%
!!! ATAAGAACATGTTACTTTTT+TGG - Chr1:3006707-3006726 None:intergenic 20.0%
!!! ATTATATTTGGGTTGATATT+GGG + Chr1:3005926-3005945 MsG0180000218.01.T01:intron 20.0%
!!! GAAAATAATGTTTTTGGTTT+AGG + Chr1:3008424-3008443 MsG0180000218.01.T01:intron 20.0%
!!! GTAAAATTTTGAAAAGGATT+AGG + Chr1:3005441-3005460 MsG0180000218.01.T01:intron 20.0%
!!! TATTATATTTGGGTTGATAT+TGG + Chr1:3005925-3005944 MsG0180000218.01.T01:intron 20.0%
!!! TTAATTGTTCTTGTTTATCT+GGG + Chr1:3008079-3008098 MsG0180000218.01.T01:intron 20.0%
!!! TTTAATTGTTCTTGTTTATC+TGG + Chr1:3008078-3008097 MsG0180000218.01.T01:intron 20.0%
!!! TTTTTACTTCTGAATTAACT+TGG - Chr1:3008739-3008758 None:intergenic 20.0%
! AAAGCATAACAAGAACATTA+CGG - Chr1:3006259-3006278 None:intergenic 25.0%
! AAATATTGAAACAACAGGAA+TGG - Chr1:3006662-3006681 None:intergenic 25.0%
! AATATTGAAACAACAGGAAT+GGG - Chr1:3006661-3006680 None:intergenic 25.0%
! AATCAAACTTATTTGGTCAA+TGG - Chr1:3006212-3006231 None:intergenic 25.0%
! ACATAGAAGGATAATAACAA+TGG - Chr1:3005798-3005817 None:intergenic 25.0%
! ACTTTCCAATCAAACTTATT+TGG - Chr1:3006219-3006238 None:intergenic 25.0%
! ATCTCTTATATTCAAGTATC+TGG - Chr1:3008228-3008247 None:intergenic 25.0%
! ATTACTTGAGAAGAATAAAG+TGG + Chr1:3008948-3008967 MsG0180000218.01.T01:intron 25.0%
! ATTGACCAAATAAGTTTGAT+TGG + Chr1:3006211-3006230 MsG0180000218.01.T01:intron 25.0%
! CTGAGGTAATTAAAAAATTC+TGG - Chr1:3008980-3008999 None:intergenic 25.0%
! GAATTATTTCCTGAAGTATA+TGG + Chr1:3006079-3006098 MsG0180000218.01.T01:intron 25.0%
! GAGTTATAAATAACATGGAA+TGG + Chr1:3006349-3006368 MsG0180000218.01.T01:intron 25.0%
! GATAGGTATATTGATGTTTA+TGG + Chr1:3008675-3008694 MsG0180000218.01.T01:intron 25.0%
! TAACTATCTAGTAATGAGAT+GGG + Chr1:3007740-3007759 MsG0180000218.01.T01:intron 25.0%
! TATAACATGTAACTTAAGTC+GGG - Chr1:3006155-3006174 None:intergenic 25.0%
! TGCTTAAATTATTCACAATG+CGG + Chr1:3008448-3008467 MsG0180000218.01.T01:intron 25.0%
! TTACTTGAGAAGAATAAAGT+GGG + Chr1:3008949-3008968 MsG0180000218.01.T01:intron 25.0%
! TTCCAATCAAACAATCATAT+AGG + Chr1:3007418-3007437 MsG0180000218.01.T01:intron 25.0%
!! AACAATTTAAGACAAACTTC+AGG - Chr1:3006512-3006531 None:intergenic 25.0%
!! ATGTTTTATCTTGACTATTG+TGG + Chr1:3007296-3007315 MsG0180000218.01.T01:intron 25.0%
!! GTATAATCATCTAAGATTCT+TGG + Chr1:3007792-3007811 MsG0180000218.01.T01:intron 25.0%
!! TGTTTTATCTTGACTATTGT+GGG + Chr1:3007297-3007316 MsG0180000218.01.T01:intron 25.0%
!!! AGATTCTTGGTTTTTAATTG+TGG + Chr1:3007805-3007824 MsG0180000218.01.T01:intron 25.0%
!!! ATGTTTGTGCTTTTTACTTA+TGG + Chr1:3008642-3008661 MsG0180000218.01.T01:intron 25.0%
!!! GAGTGAAAAAAATGTTGTTT+TGG + Chr1:3009264-3009283 MsG0180000218.01.T01:three_prime_UTR 25.0%
!!! TAATTCTGTTTTGAAATGGA+GGG + Chr1:3006414-3006433 MsG0180000218.01.T01:intron 25.0%
!!! TCTTTTGCCATTTTCAAATA+TGG + Chr1:3006818-3006837 MsG0180000218.01.T01:intron 25.0%
!!! TTAATTCTGTTTTGAAATGG+AGG + Chr1:3006413-3006432 MsG0180000218.01.T01:intron 25.0%
!!! TTACCCAGTTTTTTATACAA+GGG + Chr1:3008908-3008927 MsG0180000218.01.T01:intron 25.0%
!!! TTCTGAAATATTGAAACAAC+AGG - Chr1:3006667-3006686 None:intergenic 25.0%
!!! TTTACCCAGTTTTTTATACA+AGG + Chr1:3008907-3008926 MsG0180000218.01.T01:intron 25.0%
!!! TTTCTACCATGTTTTTATGT+AGG + Chr1:3009543-3009562 MsG0180000218.01.T01:three_prime_UTR 25.0%
!!! TTTCTTGTTTTTCGATTTAC+TGG + Chr1:3005368-3005387 MsG0180000218.01.T01:intron 25.0%
AAATGGGCCATATTTGAAAA+TGG - Chr1:3006828-3006847 None:intergenic 30.0%
AACATGTTCTTATGGTATTC+TGG + Chr1:3006714-3006733 MsG0180000218.01.T01:intron 30.0%
ACAATAATAGGACACATAGA+AGG - Chr1:3005811-3005830 None:intergenic 30.0%
ACTTCCCTTGTATAAAAAAC+TGG - Chr1:3008915-3008934 None:intergenic 30.0%
AGCAAGCCATATTTGAAAAT+GGG - Chr1:3006844-3006863 None:intergenic 30.0%
ATCGGAATAGAATTTCATTC+AGG + Chr1:3005313-3005332 MsG0180000218.01.T01:intron 30.0%
ATGGCACAAATATTGTAAAG+AGG - Chr1:3006753-3006772 None:intergenic 30.0%
ATGTTTATGGAGAAGTTGAA+TGG + Chr1:3008688-3008707 MsG0180000218.01.T01:intron 30.0%
ATTACGTTGTTTATCCTAAC+AGG + Chr1:3005772-3005791 MsG0180000218.01.T01:intron 30.0%
ATTATTACAGTAGACAGTTG+TGG + Chr1:3009003-3009022 MsG0180000218.01.T01:intron 30.0%
CACAAATATTGTAAAGAGGA+AGG - Chr1:3006749-3006768 None:intergenic 30.0%
CATTACTAGATAGTTACCTT+TGG - Chr1:3007736-3007755 None:intergenic 30.0%
CTTATGGAAAAAGTCTTGAT+AGG + Chr1:3008658-3008677 MsG0180000218.01.T01:intron 30.0%
CTTCCCTTGTATAAAAAACT+GGG - Chr1:3008914-3008933 None:intergenic 30.0%
GAATTAAGTTTATTACAGGC+AGG - Chr1:3006400-3006419 None:intergenic 30.0%
GACCATGTCTCATATTAAAA+TGG - Chr1:3008127-3008146 None:intergenic 30.0%
GATATTTATAGCATGCTTGT+AGG + Chr1:3008299-3008318 MsG0180000218.01.T01:intron 30.0%
GCGTCATTGTTCTATTATAT+AGG + Chr1:3009420-3009439 MsG0180000218.01.T01:three_prime_UTR 30.0%
GGGTCACATAATTGTATAAA+AGG + Chr1:3007263-3007282 MsG0180000218.01.T01:intron 30.0%
GGTATATAGGTTATGTAGTA+AGG - Chr1:3009491-3009510 None:intergenic 30.0%
GTAACTATCTAGTAATGAGA+TGG + Chr1:3007739-3007758 MsG0180000218.01.T01:intron 30.0%
GTAGTACCTACATAAAAACA+TGG - Chr1:3009552-3009571 None:intergenic 30.0%
GTCCTATATGATTGTTTGAT+TGG - Chr1:3007423-3007442 None:intergenic 30.0%
TAAAAAACTGGGTAAAAGCT+AGG - Chr1:3008903-3008922 None:intergenic 30.0%
TAGCAAGCCATATTTGAAAA+TGG - Chr1:3006845-3006864 None:intergenic 30.0%
TATTTGGTCAATGGTCAATA+AGG - Chr1:3006203-3006222 None:intergenic 30.0%
TCAATAAGTTAATCCAACCA+AGG - Chr1:3008601-3008620 None:intergenic 30.0%
TCGGAATAGAATTTCATTCA+GGG + Chr1:3005314-3005333 MsG0180000218.01.T01:intron 30.0%
TCTACTGTAATAATCAACTG+AGG - Chr1:3008997-3009016 None:intergenic 30.0%
TCTATGTGTCCTATTATTGT+TGG + Chr1:3005811-3005830 MsG0180000218.01.T01:intron 30.0%
TCTTCTCGCATACTTAAAAT+AGG + Chr1:3007341-3007360 MsG0180000218.01.T01:intron 30.0%
TTCAAACGTCCAACAATAAT+AGG - Chr1:3005823-3005842 None:intergenic 30.0%
TTCAGGAAATAATTCCAACA+AGG - Chr1:3006074-3006093 None:intergenic 30.0%
! AGAATTTCATTCAGGGTTTT+AGG + Chr1:3005321-3005340 MsG0180000218.01.T01:intron 30.0%
! ATAAAACTTGGTTGTTGGTT+TGG - Chr1:3009366-3009385 None:intergenic 30.0%
! ATATGGCCCATTTTCAAATA+TGG + Chr1:3006835-3006854 MsG0180000218.01.T01:intron 30.0%
! GAAGCTTCTTTTCTATGTAT+AGG + Chr1:3007551-3007570 MsG0180000218.01.T01:intron 30.0%
! GAATTTCATTCAGGGTTTTA+GGG + Chr1:3005322-3005341 MsG0180000218.01.T01:intron 30.0%
! TAACGCTTACTTTGTTTGAT+CGG + Chr1:3005295-3005314 MsG0180000218.01.T01:intron 30.0%
! TCCTGTGAAAAACATGTTTT+GGG + Chr1:3009223-3009242 MsG0180000218.01.T01:three_prime_UTR 30.0%
! TTAGTTCAGTTTTTGAATCG+AGG + Chr1:3006484-3006503 MsG0180000218.01.T01:intron 30.0%
!! AGCCATTTTAATATGAGACA+TGG + Chr1:3008122-3008141 MsG0180000218.01.T01:intron 30.0%
!! ATAAATGCTTGTGGTTCTAA+AGG + Chr1:3009198-3009217 MsG0180000218.01.T01:three_prime_UTR 30.0%
!! CTTGTTATGTTTTTCCTTGT+TGG + Chr1:3006057-3006076 MsG0180000218.01.T01:intron 30.0%
!! CTTTTACATCAAGTTGCTTT+AGG + Chr1:3005988-3006007 MsG0180000218.01.T01:intron 30.0%
!! GACTATATAGTAGCCATTTT+AGG - Chr1:3007481-3007500 None:intergenic 30.0%
!! TAAAACTTGGTTGTTGGTTT+GGG - Chr1:3009365-3009384 None:intergenic 30.0%
!! TGTTTTTCGATTTACTGGTT+TGG + Chr1:3005373-3005392 MsG0180000218.01.T01:intron 30.0%
!!! AAGCACTTTTGAGATTGTTT+GGG + Chr1:3005560-3005579 MsG0180000218.01.T01:intron 30.0%
!!! AGTTTTTTCTAGTTAGCTGT+TGG + Chr1:3008836-3008855 MsG0180000218.01.T01:intron 30.0%
!!! GTTTTTCGATTTACTGGTTT+GGG + Chr1:3005374-3005393 MsG0180000218.01.T01:intron 30.0%
!!! TAAGCACTTTTGAGATTGTT+TGG + Chr1:3005559-3005578 MsG0180000218.01.T01:intron 30.0%
AAACAAAGTAAGCGTTACAC+AGG - Chr1:3005292-3005311 None:intergenic 35.0%
AAAGCCAAAAATCCGACATA+TGG + Chr1:3006899-3006918 MsG0180000218.01.T01:intron 35.0%
AATCCATGTTACCACAATTG+AGG - Chr1:3007905-3007924 None:intergenic 35.0%
AATGCATTATTGCGAAAGTC+GGG + Chr1:3007036-3007055 MsG0180000218.01.T01:intron 35.0%
ACTCTTCAACCATATACTTC+AGG - Chr1:3006091-3006110 None:intergenic 35.0%
ATCTACTGTCCATCAAATCT+AGG - Chr1:3007157-3007176 None:intergenic 35.0%
ATGGTTCATGTCATTGACAT+AGG + Chr1:3008190-3008209 MsG0180000218.01.T01:intron 35.0%
CATCTTGTCTGAACTGTATT+GGG + Chr1:3007093-3007112 MsG0180000218.01.T01:intron 35.0%
CGCAATAATGCATTCATATC+AGG - Chr1:3007030-3007049 None:intergenic 35.0%
GAATGCATTATTGCGAAAGT+CGG + Chr1:3007035-3007054 MsG0180000218.01.T01:intron 35.0%
GATAAGGATCCTAGATTTGA+TGG + Chr1:3007145-3007164 MsG0180000218.01.T01:intron 35.0%
GATAATAACAATGGCCTGTT+AGG - Chr1:3005789-3005808 None:intergenic 35.0%
GATTTATCTTGTATTGCTGC+AGG + Chr1:3009032-3009051 MsG0180000218.01.T01:intron 35.0%
GATTTATTGCAACCTCGATA+AGG + Chr1:3007129-3007148 MsG0180000218.01.T01:intron 35.0%
GCTTAAATGGATAATCTGGT+GGG - Chr1:3007711-3007730 None:intergenic 35.0%
GTTTGCTTCGATTTCTTCTT+CGG + Chr1:3005233-3005252 MsG0180000218.01.T01:intron 35.0%
TACTAGATAGTTACCTTTGG+TGG - Chr1:3007733-3007752 None:intergenic 35.0%
TACTTGTTTGAGCTATCTAC+TGG + Chr1:3005534-3005553 MsG0180000218.01.T01:intron 35.0%
TATGGAGAAGTTGAATGGTA+GGG + Chr1:3008693-3008712 MsG0180000218.01.T01:intron 35.0%
TCACTTAGTCGGATAAAACT+TGG - Chr1:3009378-3009397 None:intergenic 35.0%
TGAACTAGCATAAATGCTTG+TGG + Chr1:3009189-3009208 MsG0180000218.01.T01:exon 35.0%
TGTATTGCTAAGGTCAAATG+CGG + Chr1:3007841-3007860 MsG0180000218.01.T01:intron 35.0%
TTATCCATTTAAGCCACCAA+AGG + Chr1:3007717-3007736 MsG0180000218.01.T01:CDS 35.0%
TTATGGAGAAGTTGAATGGT+AGG + Chr1:3008692-3008711 MsG0180000218.01.T01:intron 35.0%
TTGTTGGACGTTTGAAGAAA+TGG + Chr1:3005827-3005846 MsG0180000218.01.T01:intron 35.0%
TTGTTGTCATGATGTAGTTG+AGG + Chr1:3007879-3007898 MsG0180000218.01.T01:intron 35.0%
TTTGACCTTAGCAATACATC+CGG - Chr1:3007839-3007858 None:intergenic 35.0%
! ACGCCGTTTAATTTATGTAG+TGG - Chr1:3009404-3009423 None:intergenic 35.0%
! ATCTTTTCTCCCTTTTCTTG+AGG + Chr1:3008358-3008377 MsG0180000218.01.T01:intron 35.0%
! CTCCTGTGAAAAACATGTTT+TGG + Chr1:3009222-3009241 MsG0180000218.01.T01:three_prime_UTR 35.0%
! TCCCAAAACATGTTTTTCAC+AGG - Chr1:3009227-3009246 None:intergenic 35.0%
! TGAGAGCATGATTTGATACA+AGG + Chr1:3007389-3007408 MsG0180000218.01.T01:intron 35.0%
! TGTAGTGGAATTCACTTAGT+CGG - Chr1:3009389-3009408 None:intergenic 35.0%
!! ATTTGGGTTGATATTGGGAT+TGG + Chr1:3005931-3005950 MsG0180000218.01.T01:intron 35.0%
!! CATGGAATGGGAGTATTATT+TGG + Chr1:3006362-3006381 MsG0180000218.01.T01:intron 35.0%
!! TTCATTAGGTTGAACTGCAA+TGG + Chr1:3006530-3006549 MsG0180000218.01.T01:intron 35.0%
!!! AACATGTTTTGGGATGCAAA+AGG + Chr1:3009233-3009252 MsG0180000218.01.T01:three_prime_UTR 35.0%
AAAAGAAGCTTCAAGCGTAC+TGG - Chr1:3007543-3007562 None:intergenic 40.0%
AACCTTGGAGATGGAATCTT+AGG - Chr1:3005216-3005235 None:intergenic 40.0%
AACTCCGTTCCTCAAGAAAA+GGG - Chr1:3008370-3008389 None:intergenic 40.0%
AAGTTCTGTTAGCGAGAGAA+AGG - Chr1:3005188-3005207 None:intergenic 40.0%
AATATGTACTTGGGCTGATG+TGG + Chr1:3007936-3007955 MsG0180000218.01.T01:intron 40.0%
AATCCATGTGACCACAATTG+AGG - Chr1:3007991-3008010 None:intergenic 40.0%
AATGGCTAAACGCAATGACA+TGG - Chr1:3008109-3008128 None:intergenic 40.0%
ACATGGTAGAAACTCGACTT+AGG - Chr1:3009535-3009554 None:intergenic 40.0%
ACCCTAACATCAACAGCAAT+GGG + Chr1:3008505-3008524 MsG0180000218.01.T01:CDS 40.0%
ACCTTGGAGATGGAATCTTA+GGG - Chr1:3005215-3005234 None:intergenic 40.0%
ACGCATTACTAAGGAGTTGA+AGG + Chr1:3006560-3006579 MsG0180000218.01.T01:CDS 40.0%
ACTGTGGAATTTGGAGAGAT+GGG + Chr1:3007068-3007087 MsG0180000218.01.T01:intron 40.0%
AGTTCTGTTAGCGAGAGAAA+GGG - Chr1:3005187-3005206 None:intergenic 40.0%
AGTTGCTTGTGTTGAGCTTA+CGG + Chr1:3005499-3005518 MsG0180000218.01.T01:intron 40.0%
ATAATCTGGTGGGAAGTGAA+TGG - Chr1:3007701-3007720 None:intergenic 40.0%
ATCTCTCCAAATTCCACAGT+AGG - Chr1:3007068-3007087 None:intergenic 40.0%
ATGTCATTGACATAGGCTGA+TGG + Chr1:3008197-3008216 MsG0180000218.01.T01:intron 40.0%
ATTGAAACAACAGGAATGGG+TGG - Chr1:3006658-3006677 None:intergenic 40.0%
CAATCAAAGCAGAACCTTCA+TGG + Chr1:3008171-3008190 MsG0180000218.01.T01:intron 40.0%
CATTGGCAAGCTACTATCAT+GGG + Chr1:3007634-3007653 MsG0180000218.01.T01:CDS 40.0%
GAAGAAATCGAAGCAAACCT+TGG - Chr1:3005231-3005250 None:intergenic 40.0%
GCATCTTGTCTGAACTGTAT+TGG + Chr1:3007092-3007111 MsG0180000218.01.T01:intron 40.0%
GGCTGATGTGGATTTAATTG+TGG + Chr1:3007948-3007967 MsG0180000218.01.T01:intron 40.0%
GGCTTAAATGGATAATCTGG+TGG - Chr1:3007712-3007731 None:intergenic 40.0%
GGTGGCTTAAATGGATAATC+TGG - Chr1:3007715-3007734 None:intergenic 40.0%
GTACGATAATATGCCTTGGT+TGG + Chr1:3008585-3008604 MsG0180000218.01.T01:intron 40.0%
GTCAATGACATGAACCATGA+AGG - Chr1:3008188-3008207 None:intergenic 40.0%
GTCGGATAAAACTTGGTTGT+TGG - Chr1:3009371-3009390 None:intergenic 40.0%
TACTGTGGAATTTGGAGAGA+TGG + Chr1:3007067-3007086 MsG0180000218.01.T01:intron 40.0%
TATTACAGGCAGGCAGTAAA+AGG - Chr1:3006390-3006409 None:intergenic 40.0%
TCATTGGCAAGCTACTATCA+TGG + Chr1:3007633-3007652 MsG0180000218.01.T01:CDS 40.0%
TCTAACAGTACGTGTGAATC+AGG + Chr1:3007366-3007385 MsG0180000218.01.T01:intron 40.0%
TCTCATGCTCTCACCTAAAA+TGG + Chr1:3007465-3007484 MsG0180000218.01.T01:intron 40.0%
TGATTCACACGTACTGTTAG+AGG - Chr1:3007367-3007386 None:intergenic 40.0%
TGTCATTGACATAGGCTGAT+GGG + Chr1:3008198-3008217 MsG0180000218.01.T01:intron 40.0%
TTCTAACCTTGTTCTGCCTA+GGG + Chr1:3009592-3009611 MsG0180000218.01.T01:three_prime_UTR 40.0%
TTGAAACAACAGGAATGGGT+GGG - Chr1:3006657-3006676 None:intergenic 40.0%
TTGACCTTAGCAATACATCC+GGG - Chr1:3007838-3007857 None:intergenic 40.0%
TTGGTGAAGACCTGTTTCAT+TGG + Chr1:3007617-3007636 MsG0180000218.01.T01:CDS 40.0%
TTGTACATGTGGGCAATATC+AGG - Chr1:3009114-3009133 None:intergenic 40.0%
TTGTGGTCATGTTGTAGTTG+AGG + Chr1:3007965-3007984 MsG0180000218.01.T01:intron 40.0%
TTTAATTGTGGTCTGTGTCC+CGG + Chr1:3007817-3007836 MsG0180000218.01.T01:intron 40.0%
TTTAGGCCTCCAAGTATGTT+GGG + Chr1:3006005-3006024 MsG0180000218.01.T01:intron 40.0%
TTTCTAACCTTGTTCTGCCT+AGG + Chr1:3009591-3009610 MsG0180000218.01.T01:three_prime_UTR 40.0%
! ATTCACAATGCGGCTTTTGT+AGG + Chr1:3008458-3008477 MsG0180000218.01.T01:intron 40.0%
! CAAATCTAGGATCCTTATCG+AGG - Chr1:3007144-3007163 None:intergenic 40.0%
! CTCCTTAGTAATGCGTTTTG+AGG - Chr1:3006556-3006575 None:intergenic 40.0%
! CTTGTCAGTCTTGTACATGT+GGG - Chr1:3009124-3009143 None:intergenic 40.0%
! GAAGGTACGATAATATGCCT+TGG + Chr1:3008581-3008600 MsG0180000218.01.T01:intron 40.0%
! GTGGAACACTTTTGTTCGAA+AGG - Chr1:3008487-3008506 None:intergenic 40.0%
! GTTACCTTTGGTGGCTTAAA+TGG - Chr1:3007724-3007743 None:intergenic 40.0%
! TAGTAGCTTGCCAATGAAAC+AGG - Chr1:3007630-3007649 None:intergenic 40.0%
! TCCCATTGCTGTTGATGTTA+GGG - Chr1:3008509-3008528 None:intergenic 40.0%
! TGCATTCATATCAGGCATTG+AGG - Chr1:3007022-3007041 None:intergenic 40.0%
! TGTTGAGCTTACGGTTTGTT+TGG + Chr1:3005508-3005527 MsG0180000218.01.T01:intron 40.0%
! TTCTCCCTTTTCTTGAGGAA+CGG + Chr1:3008363-3008382 MsG0180000218.01.T01:intron 40.0%
! TTGACATTCTGAAAGAGCAG+TGG + Chr1:3008538-3008557 MsG0180000218.01.T01:CDS 40.0%
! TTTTCTCCTCTTACTCTCGA+CGG - Chr1:3007189-3007208 None:intergenic 40.0%
!! CTTATGGTATTCTGGAGCAT+TGG + Chr1:3006722-3006741 MsG0180000218.01.T01:intron 40.0%
!!! CTGTTTTGAAATGGAGGGAT+AGG + Chr1:3006419-3006438 MsG0180000218.01.T01:intron 40.0%
!!! TGTTGTTTTGGGATGCATGT+TGG + Chr1:3009276-3009295 MsG0180000218.01.T01:three_prime_UTR 40.0%
AACTGGGTAAAAGCTAGGCA+AGG - Chr1:3008898-3008917 None:intergenic 45.0%
ACCAAAGGATCATCTGGGTT+TGG - Chr1:3009090-3009109 None:intergenic 45.0%
ACCCATCACAAAATTGGCCA+TGG - Chr1:3006995-3007014 None:intergenic 45.0%
ACCCTAAGATTCCATCTCCA+AGG + Chr1:3005211-3005230 MsG0180000218.01.T01:five_prime_UTR 45.0%
ACCTTCGAAACAGTAAGAGC+AGG - Chr1:3008567-3008586 None:intergenic 45.0%
ACGATGCCAAGACAACAAAC+AGG - Chr1:3006035-3006054 None:intergenic 45.0%
AGGAATACACCACCAGCATA+AGG - Chr1:3007673-3007692 None:intergenic 45.0%
AGGCATCAACACACTCTCAT+TGG + Chr1:3006121-3006140 MsG0180000218.01.T01:intron 45.0%
AGGCCTCAATTGTGGTAACA+TGG + Chr1:3007899-3007918 MsG0180000218.01.T01:intron 45.0%
ATCGAAGCAAACCTTGGAGA+TGG - Chr1:3005225-3005244 None:intergenic 45.0%
CAACTCCGTTCCTCAAGAAA+AGG - Chr1:3008371-3008390 None:intergenic 45.0%
CACCCTAACATCAACAGCAA+TGG + Chr1:3008504-3008523 MsG0180000218.01.T01:CDS 45.0%
CATCACAAAATTGGCCATGG+CGG - Chr1:3006992-3007011 None:intergenic 45.0%
CGATGCCAAGACAACAAACA+GGG - Chr1:3006034-3006053 None:intergenic 45.0%
CTTTAGGCCTCCAAGTATGT+TGG + Chr1:3006004-3006023 MsG0180000218.01.T01:intron 45.0%
GAAACAGGTCTTCACCAACA+GGG - Chr1:3007615-3007634 None:intergenic 45.0%
GCGTTACACAGGATACAGAA+AGG - Chr1:3005281-3005300 None:intergenic 45.0%
GGCCTCAAAACGCATTACTA+AGG + Chr1:3006551-3006570 MsG0180000218.01.T01:CDS 45.0%
GTCATCAGTGTTATCGACAG+CGG + Chr1:3006876-3006895 MsG0180000218.01.T01:intron 45.0%
TACAAACCGTCGAGAGTAAG+AGG + Chr1:3007180-3007199 MsG0180000218.01.T01:intron 45.0%
TCAGCACCTACTGTGGAATT+TGG + Chr1:3007059-3007078 MsG0180000218.01.T01:intron 45.0%
TCCAAACCCAGATGATCCTT+TGG + Chr1:3009086-3009105 MsG0180000218.01.T01:CDS 45.0%
TCCTGCTCTTACTGTTTCGA+AGG + Chr1:3008563-3008582 MsG0180000218.01.T01:CDS 45.0%
TGAAACAGGTCTTCACCAAC+AGG - Chr1:3007616-3007635 None:intergenic 45.0%
TGTAGTTGAGGCCTCAATTG+TGG + Chr1:3007891-3007910 MsG0180000218.01.T01:intron 45.0%
! CATTGCTGTTGATGTTAGGG+TGG - Chr1:3008506-3008525 None:intergenic 45.0%
! CTCCCATTGCTGTTGATGTT+AGG - Chr1:3008510-3008529 None:intergenic 45.0%
! CTTTTCTTGAGGAACGGAGT+TGG + Chr1:3008369-3008388 MsG0180000218.01.T01:intron 45.0%
! GCCATGGCCAATTTTGTGAT+GGG + Chr1:3006991-3007010 MsG0180000218.01.T01:intron 45.0%
! GCTTGTCAGTCTTGTACATG+TGG - Chr1:3009125-3009144 None:intergenic 45.0%
! GGCACCATATGTCGGATTTT+TGG - Chr1:3006906-3006925 None:intergenic 45.0%
!! ATGGCCAATTTTGTGATGGG+TGG + Chr1:3006994-3007013 MsG0180000218.01.T01:intron 45.0%
!! ATGGTTGAAGAGTGCTATCG+AGG + Chr1:3006098-3006117 MsG0180000218.01.T01:intron 45.0%
!! TTTAAAGAAATATTATATTT+GGG + Chr1:3005915-3005934 MsG0180000218.01.T01:intron 5.0%
!!! TTTTAAAGAAATATTATATT+TGG + Chr1:3005914-3005933 MsG0180000218.01.T01:intron 5.0%
AAGGTCAAATGCGGCTGATG+TGG + Chr1:3007850-3007869 MsG0180000218.01.T01:intron 50.0%
AGGCCTCAATTGTGGTCACA+TGG + Chr1:3007985-3008004 MsG0180000218.01.T01:intron 50.0%
ATACCAGCACTGCAAGACAC+AGG - Chr1:3006603-3006622 None:intergenic 50.0%
CAGGCACCAAAGGATCATCT+GGG - Chr1:3009095-3009114 None:intergenic 50.0%
CCAAGTATGAGACTACTGCC+CGG + Chr1:3009144-3009163 MsG0180000218.01.T01:CDS 50.0%
GAGAGAGAGAGACTGTGCAA+TGG - Chr1:3006631-3006650 None:intergenic 50.0%
GCAAGCTACTATCATGGGAC+CGG + Chr1:3007639-3007658 MsG0180000218.01.T01:CDS 50.0%
GCAGAGAGCAAATTGACAGC+AGG - Chr1:3009059-3009078 None:intergenic 50.0%
GTGGGAAGTGAATGGTCACT+AGG - Chr1:3007693-3007712 None:intergenic 50.0%
GTGTCCCGGATGTATTGCTA+AGG + Chr1:3007831-3007850 MsG0180000218.01.T01:intron 50.0%
TATACTCATGCAGGCCCTGT+TGG + Chr1:3007598-3007617 MsG0180000218.01.T01:intron 50.0%
TCAGGCACCAAAGGATCATC+TGG - Chr1:3009096-3009115 None:intergenic 50.0%
TGCCAAGACAACAAACAGGG+CGG - Chr1:3006031-3006050 None:intergenic 50.0%
TGGGCAATATCAGGCACCAA+AGG - Chr1:3009105-3009124 None:intergenic 50.0%
! CGCCATGGCCAATTTTGTGA+TGG + Chr1:3006990-3007009 MsG0180000218.01.T01:intron 50.0%
! GGTGCCACCCATCACAAAAT+TGG - Chr1:3007001-3007020 None:intergenic 50.0%
!! CTGCACAAAGTGGCGGATAA+CGG + Chr1:3006932-3006951 MsG0180000218.01.T01:intron 50.0%
!! GTTGAAGAGTGCTATCGAGG+AGG + Chr1:3006101-3006120 MsG0180000218.01.T01:intron 50.0%
!!! GGATATCAGTGGCGGGTTTT+TGG + Chr1:3006962-3006981 MsG0180000218.01.T01:intron 50.0%
CAGCACTGCAAGACACAGGA+GGG - Chr1:3006599-3006618 None:intergenic 55.0%
CCAGCATAAGGACTGTCTGC+CGG - Chr1:3007661-3007680 None:intergenic 55.0%
CCGGGCAGTAGTCTCATACT+TGG - Chr1:3009147-3009166 None:intergenic 55.0%
GCAGACAGTCCTTATGCTGG+TGG + Chr1:3007661-3007680 MsG0180000218.01.T01:CDS 55.0%
! AGGATGGCGGCACCATATGT+CGG - Chr1:3006914-3006933 None:intergenic 55.0%
! ATCCGCCACTTTGTGCAGGA+TGG - Chr1:3006930-3006949 None:intergenic 55.0%
! CGTTATCCGCCACTTTGTGC+AGG - Chr1:3006934-3006953 None:intergenic 55.0%
!! AAAGTGGCGGATAACGGCCA+TGG + Chr1:3006938-3006957 MsG0180000218.01.T01:intron 55.0%
!!! GGGTTTTTGGCTTTCCGCCA+TGG + Chr1:3006975-3006994 MsG0180000218.01.T01:intron 55.0%
ACAGGGCGGCCCAACATACT+TGG - Chr1:3006017-3006036 None:intergenic 60.0%
AGTCGGGTCAGCACCTACTG+TGG + Chr1:3007052-3007071 MsG0180000218.01.T01:intron 60.0%
CCAGCACTGCAAGACACAGG+AGG - Chr1:3006600-3006619 None:intergenic 60.0%
CCGGCAGACAGTCCTTATGC+TGG + Chr1:3007658-3007677 MsG0180000218.01.T01:CDS 60.0%
CCTCCTGTGTCTTGCAGTGC+TGG + Chr1:3006597-3006616 MsG0180000218.01.T01:CDS 60.0%
CGCCATCCTGCACAAAGTGG+CGG + Chr1:3006925-3006944 MsG0180000218.01.T01:intron 60.0%
TGCCGCCATCCTGCACAAAG+TGG + Chr1:3006922-3006941 MsG0180000218.01.T01:intron 60.0%
! CGCCACTTTGTGCAGGATGG+CGG - Chr1:3006927-3006946 None:intergenic 60.0%
!! ACGGCCATGGCGGATATCAG+TGG + Chr1:3006951-3006970 MsG0180000218.01.T01:intron 60.0%
!! CCATGGCGGATATCAGTGGC+GGG + Chr1:3006955-3006974 MsG0180000218.01.T01:intron 60.0%
!! GCCATGGCGGATATCAGTGG+CGG + Chr1:3006954-3006973 MsG0180000218.01.T01:intron 60.0%
!! GGCCGCCCTGTTTGTTGTCT+TGG + Chr1:3006026-3006045 MsG0180000218.01.T01:intron 60.0%
CCCGCCACTGATATCCGCCA+TGG - Chr1:3006958-3006977 None:intergenic 65.0%
GGGCGGCCCAACATACTTGG+AGG - Chr1:3006014-3006033 None:intergenic 65.0%
!! GTGGCGGATAACGGCCATGG+CGG + Chr1:3006941-3006960 MsG0180000218.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 3005171 3009612 3005171 ID=MsG0180000218.01;Name=MsG0180000218.01
Chr1 mRNA 3005171 3009612 3005171 ID=MsG0180000218.01.T01;Parent=MsG0180000218.01;Name=MsG0180000218.01.T01;_AED=0.45;_eAED=0.45;_QI=73|1|1|1|0.75|0.6|5|421|146
Chr1 exon 3009054 3009612 3009054 ID=MsG0180000218.01.T01:exon:6351;Parent=MsG0180000218.01.T01
Chr1 exon 3008480 3008584 3008480 ID=MsG0180000218.01.T01:exon:6350;Parent=MsG0180000218.01.T01
Chr1 exon 3007611 3007738 3007611 ID=MsG0180000218.01.T01:exon:6349;Parent=MsG0180000218.01.T01
Chr1 exon 3006538 3006618 3006538 ID=MsG0180000218.01.T01:exon:6348;Parent=MsG0180000218.01.T01
Chr1 exon 3005171 3005232 3005171 ID=MsG0180000218.01.T01:exon:6347;Parent=MsG0180000218.01.T01
Chr1 five_prime_UTR 3005171 3005232 3005171 ID=MsG0180000218.01.T01:five_prime_utr;Parent=MsG0180000218.01.T01
Chr1 five_prime_UTR 3006538 3006548 3006538 ID=MsG0180000218.01.T01:five_prime_utr;Parent=MsG0180000218.01.T01
Chr1 CDS 3006549 3006618 3006549 ID=MsG0180000218.01.T01:cds;Parent=MsG0180000218.01.T01
Chr1 CDS 3007611 3007738 3007611 ID=MsG0180000218.01.T01:cds;Parent=MsG0180000218.01.T01
Chr1 CDS 3008480 3008584 3008480 ID=MsG0180000218.01.T01:cds;Parent=MsG0180000218.01.T01
Chr1 CDS 3009054 3009191 3009054 ID=MsG0180000218.01.T01:cds;Parent=MsG0180000218.01.T01
Chr1 three_prime_UTR 3009192 3009612 3009192 ID=MsG0180000218.01.T01:three_prime_utr;Parent=MsG0180000218.01.T01
Gene Sequence

>MsG0180000218.01.T01

ATGGCCTCAAAACGCATTACTAAGGAGTTGAAGGACTTGCAGAAAGACCCTCCTGTGTCTTGCAGTGCTGGCCCTGTTGGTGAAGACCTGTTTCATTGGCAAGCTACTATCATGGGACCGGCAGACAGTCCTTATGCTGGTGGTGTATTCCTAGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGGTTTCCTTTCGAACAAAAGTGTTCCACCCTAACATCAACAGCAATGGGAGTATCTGTCTTGACATTCTGAAAGAGCAGTGGAGTCCTGCTCTTACTGTTTCGAAGGTCCTGCTGTCAATTTGCTCTCTGCTGACAGATCCAAACCCAGATGATCCTTTGGTGCCTGATATTGCCCACATGTACAAGACTGACAAGCCAAGTATGAGACTACTGCCCGGTCTTGGACTCAGAAATATGCGATGA

Protein sequence

>MsG0180000218.01.T01

MASKRITKELKDLQKDPPVSCSAGPVGEDLFHWQATIMGPADSPYAGGVFLVTIHFPPDYPFKPPKVSFRTKVFHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPDIAHMYKTDKPSMRLLPGLGLRNMR*