Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024772.01.T01 | AES94600.1 | 91.541 | 331 | 26 | 1 | 1 | 329 | 1 | 331 | 0 | 620 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024772.01.T01 | O81098 | 65.854 | 205 | 70 | 0 | 125 | 329 | 1 | 205 | 1.96E-99 | 294 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024772.01.T01 | G7K3Y0 | 91.541 | 331 | 26 | 1 | 1 | 329 | 1 | 331 | 0.0 | 620 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0580024772.01 | MsG0780038480.01 | PPI |
| MsG0480020877.01 | MsG0580024772.01 | PPI |
| MsG0680033646.01 | MsG0580024772.01 | PPI |
| MsG0580024772.01 | MsG0480022790.01 | PPI |
| MsG0580024772.01 | MsG0780040423.01 | PPI |
| MsG0780041139.01 | MsG0580024772.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024772.01.T01 | MTR_5g016220 | 91.541 | 331 | 26 | 1 | 1 | 329 | 1 | 331 | 0.0 | 620 |
| MsG0580024772.01.T01 | MTR_5g016200 | 90.050 | 201 | 17 | 1 | 125 | 325 | 2 | 199 | 3.92e-131 | 372 |
| MsG0580024772.01.T01 | MTR_5g016200 | 79.365 | 126 | 22 | 2 | 1 | 124 | 1 | 124 | 2.36e-61 | 194 |
| MsG0580024772.01.T01 | MTR_5g005470 | 79.512 | 205 | 42 | 0 | 125 | 329 | 2 | 206 | 9.68e-122 | 348 |
| MsG0580024772.01.T01 | MTR_5g005470 | 73.228 | 127 | 31 | 2 | 1 | 124 | 1 | 127 | 2.24e-57 | 184 |
| MsG0580024772.01.T01 | MTR_6g042230 | 61.275 | 204 | 78 | 1 | 126 | 329 | 3 | 205 | 8.57e-82 | 247 |
| MsG0580024772.01.T01 | MTR_6g042230 | 48.872 | 133 | 63 | 2 | 1 | 131 | 1 | 130 | 4.11e-31 | 116 |
| MsG0580024772.01.T01 | MTR_6g088010 | 56.311 | 206 | 88 | 1 | 125 | 328 | 2 | 207 | 5.14e-80 | 243 |
| MsG0580024772.01.T01 | MTR_6g088010 | 47.368 | 133 | 68 | 1 | 1 | 131 | 1 | 133 | 6.55e-31 | 116 |
| MsG0580024772.01.T01 | MTR_6g088020 | 55.825 | 206 | 89 | 1 | 125 | 328 | 2 | 207 | 4.40e-77 | 235 |
| MsG0580024772.01.T01 | MTR_6g088020 | 43.609 | 133 | 73 | 1 | 1 | 131 | 1 | 133 | 2.11e-26 | 104 |
| MsG0580024772.01.T01 | MTR_7g090220 | 37.500 | 200 | 122 | 2 | 130 | 328 | 50 | 247 | 1.58e-39 | 140 |
| MsG0580024772.01.T01 | MTR_3g058520 | 50.769 | 65 | 31 | 1 | 253 | 317 | 95 | 158 | 1.31e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024772.01.T01 | AT3G22320 | 65.854 | 205 | 70 | 0 | 125 | 329 | 1 | 205 | 2.00e-100 | 294 |
| MsG0580024772.01.T01 | AT3G22320 | 55.556 | 126 | 53 | 2 | 2 | 124 | 1 | 126 | 5.28e-40 | 140 |
| MsG0580024772.01.T01 | AT5G57980 | 43.204 | 206 | 113 | 2 | 128 | 329 | 5 | 210 | 9.56e-56 | 181 |
| MsG0580024772.01.T01 | AT5G57980 | 33.071 | 127 | 78 | 4 | 5 | 124 | 5 | 131 | 9.52e-17 | 78.2 |
| MsG0580024772.01.T01 | AT2G41340 | 40.887 | 203 | 117 | 2 | 127 | 328 | 17 | 217 | 3.11e-45 | 154 |
| MsG0580024772.01.T01 | AT3G57080 | 35.484 | 217 | 137 | 2 | 113 | 328 | 7 | 221 | 2.11e-40 | 141 |
| MsG0580024772.01.T01 | AT3G54490 | 32.836 | 201 | 132 | 2 | 130 | 329 | 35 | 233 | 2.84e-31 | 117 |
| MsG0580024772.01.T01 | AT2G41340 | 36.872 | 179 | 101 | 3 | 127 | 304 | 17 | 184 | 3.57e-29 | 111 |
| MsG0580024772.01.T01 | AT2G41340 | 39.264 | 163 | 96 | 2 | 127 | 288 | 17 | 177 | 5.27e-29 | 110 |
| MsG0580024772.01.T01 | AT3G16680 | 44.156 | 77 | 41 | 1 | 207 | 281 | 2 | 78 | 2.93e-14 | 67.8 |
Find 84 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGTTGGCGTCCAGACTTTC+AGG | 0.249538 | 5:-9506672 | MsG0580024772.01.T01:CDS |
| ACATACCGATTTGTTGTCTA+AGG | 0.261902 | 5:-9505552 | None:intergenic |
| GGATCCCTCACCTGGATTCT+AGG | 0.310631 | 5:+9505654 | None:intergenic |
| GATCCTGTTGCAAGATATTA+TGG | 0.316385 | 5:-9505636 | MsG0580024772.01.T01:CDS |
| CAAGAGTTCAGGGAGAAATA+TGG | 0.317600 | 5:-9506787 | MsG0580024772.01.T01:CDS |
| CCAGATTTATGTCTTCTTCC+CGG | 0.347022 | 5:-9506704 | MsG0580024772.01.T01:CDS |
| TCAGTCAGCACCTGATGTTC+TGG | 0.354438 | 5:+9506384 | None:intergenic |
| CTTGCAGGAGGCTGAATTGC+TGG | 0.356558 | 5:-9506433 | MsG0580024772.01.T01:intron |
| ACATGTTAGTAAGGCTGTTC+TGG | 0.357577 | 5:+9506596 | None:intergenic |
| ATGAAATAATGAAGCTGTAT+AGG | 0.373700 | 5:-9507254 | MsG0580024772.01.T01:CDS |
| AATCGCCTCCAAATTTCATT+TGG | 0.374113 | 5:-9506932 | MsG0580024772.01.T01:CDS |
| GTTTGCCTCCAAATTTCATT+TGG | 0.384993 | 5:-9506554 | MsG0580024772.01.T01:CDS |
| ACGTTTGGTGTAAGTCCTTA+AGG | 0.390806 | 5:+9507032 | None:intergenic |
| ACTGACCTGAGTTTCTTTAA+CGG | 0.397368 | 5:+9506329 | None:intergenic |
| GCATCTCCATCACTGTCTTC+CGG | 0.401574 | 5:+9506860 | None:intergenic |
| AAGAGTTCAGGGAGAAATAT+GGG | 0.403486 | 5:-9506786 | MsG0580024772.01.T01:CDS |
| CAAGCTTGTGCCAGAACATC+AGG | 0.413166 | 5:-9506394 | MsG0580024772.01.T01:CDS |
| TAATGAAGCTGTATAGGATC+TGG | 0.428962 | 5:-9507248 | MsG0580024772.01.T01:CDS |
| CCGCTTTAGTAAGGCTGGTC+TGG | 0.431731 | 5:+9506971 | None:intergenic |
| ATGCCATAATATCTTGCAAC+AGG | 0.434750 | 5:+9505633 | None:intergenic |
| ATGAAATATCGAAGCTGTAT+AGG | 0.436885 | 5:-9506885 | MsG0580024772.01.T01:CDS |
| CGCCAACCTTGTCATTCAAC+GGG | 0.438451 | 5:+9507061 | None:intergenic |
| AGGTTGGCGTCCACACCTTA+AGG | 0.442532 | 5:-9507047 | MsG0580024772.01.T01:CDS |
| ACATGTCCAAGCAAGAGTTC+AGG | 0.443893 | 5:-9506798 | MsG0580024772.01.T01:CDS |
| TTGCAACAGGATCCCTCACC+TGG | 0.449627 | 5:+9505646 | None:intergenic |
| ACGCCAACCTTGTCATCCTC+CGG | 0.452689 | 5:+9506685 | None:intergenic |
| TTTCTCCCTGAACTCTTGCT+TGG | 0.453062 | 5:+9506792 | None:intergenic |
| TGGTGTAAGTCCTGAAAGTC+TGG | 0.458394 | 5:+9506662 | None:intergenic |
| ATTCTCGGAGTTCATACGTT+TGG | 0.464348 | 5:+9506642 | None:intergenic |
| GACAAGTTGTCAAGATAATC+CGG | 0.473708 | 5:-9505602 | MsG0580024772.01.T01:CDS |
| ACGGGAAGAACACATAAATC+TGG | 0.480965 | 5:+9507079 | None:intergenic |
| CATGTCCAAGCAAGAGTTCA+GGG | 0.487077 | 5:-9506797 | MsG0580024772.01.T01:CDS |
| GATGGCTCTGTAGACATTCT+CGG | 0.488016 | 5:+9506627 | None:intergenic |
| GATGGCTCTGTAGACATTCT+CGG | 0.488016 | 5:+9507002 | None:intergenic |
| TTCCTGCAGTCTCACTTGGC+CGG | 0.488931 | 5:+9505583 | None:intergenic |
| AGTCCCGTGCCGCTTTAGTA+AGG | 0.491272 | 5:+9506962 | None:intergenic |
| TATCGAAGCTGTATAGGATC+CGG | 0.503346 | 5:-9506879 | MsG0580024772.01.T01:CDS |
| GCTGTTCTGGCAAACGATGA+TGG | 0.506683 | 5:+9506609 | None:intergenic |
| GCTGGTCTGGCAAACGATGA+TGG | 0.506683 | 5:+9506984 | None:intergenic |
| ATTCTCGGAGTCCATACGTT+TGG | 0.507587 | 5:+9507017 | None:intergenic |
| CCGGGAAGAAGACATAAATC+TGG | 0.508593 | 5:+9506704 | None:intergenic |
| CCGTGCCGCTTTAGTAAGGC+TGG | 0.511251 | 5:+9506966 | None:intergenic |
| TGTTCCATGACATGTTAGTA+AGG | 0.511336 | 5:+9506587 | None:intergenic |
| AACTTCCAAATGAAATTTGG+AGG | 0.512170 | 5:+9506549 | None:intergenic |
| AACTTCCAAATGAAATTTGG+AGG | 0.512170 | 5:+9506927 | None:intergenic |
| TAGGATCTGGAAGAAGGTGA+TGG | 0.515671 | 5:-9507235 | MsG0580024772.01.T01:CDS |
| CAGCCTTACTAAAGCGGCAC+GGG | 0.515723 | 5:-9506965 | MsG0580024772.01.T01:CDS |
| GGTTAACATACAAGACTTCA+AGG | 0.520090 | 5:-9507172 | MsG0580024772.01.T01:CDS |
| TGATGGAGATGCTTCGTGAC+AGG | 0.522662 | 5:-9506849 | MsG0580024772.01.T01:CDS |
| TGATGGAGATGCTTCGCGAC+AGG | 0.523509 | 5:-9507218 | MsG0580024772.01.T01:CDS |
| TATCTTCCTGCAGTCTCACT+TGG | 0.525204 | 5:+9505579 | None:intergenic |
| CGCCAACCTTGTCATCCTCC+GGG | 0.525327 | 5:+9506686 | None:intergenic |
| ATCTCAGCTGCCTAGAATCC+AGG | 0.526579 | 5:-9505664 | MsG0580024772.01.T01:intron |
| GAAATCCTTAGACAACAAAT+CGG | 0.526850 | 5:+9505547 | None:intergenic |
| TTCCCGGAGGATGACAAGGT+TGG | 0.531846 | 5:-9506688 | MsG0580024772.01.T01:CDS |
| TTACCTCGTAGAAGATTTCG+AGG | 0.547378 | 5:-9507193 | MsG0580024772.01.T01:CDS |
| GCTGTATAGGATCTGGAAGA+AGG | 0.551009 | 5:-9507241 | MsG0580024772.01.T01:CDS |
| CCAGACCAGCCTTACTAAAG+CGG | 0.552518 | 5:-9506971 | MsG0580024772.01.T01:CDS |
| ACGCCAACCTTGTCATTCAA+CGG | 0.558382 | 5:+9507060 | None:intergenic |
| TTCCCGTTGAATGACAAGGT+TGG | 0.562118 | 5:-9507063 | MsG0580024772.01.T01:CDS |
| AACGGTGTATCTCTCAAGTA+CGG | 0.566449 | 5:+9506347 | None:intergenic |
| CTTCTTCCCGGAGGATGACA+AGG | 0.570040 | 5:-9506692 | MsG0580024772.01.T01:CDS |
| AACACATAAATCTGGTCAGA+GGG | 0.577483 | 5:+9507087 | None:intergenic |
| AGATATTATGGCATGAAGCG+TGG | 0.584475 | 5:-9505624 | MsG0580024772.01.T01:CDS |
| ACAGCCTTACTAACATGTCA+TGG | 0.590641 | 5:-9506591 | MsG0580024772.01.T01:CDS |
| AAGACATAAATCTGGTCAGA+GGG | 0.592633 | 5:+9506712 | None:intergenic |
| ATCCGGCCAAGTGAGACTGC+AGG | 0.593487 | 5:-9505585 | MsG0580024772.01.T01:CDS |
| AAGGACTTACACCAAACGTA+TGG | 0.593798 | 5:-9507028 | MsG0580024772.01.T01:CDS |
| TGGTGTAAGTCCTTAAGGTG+TGG | 0.594467 | 5:+9507037 | None:intergenic |
| CAAGACTTCAAGGAGAAGTA+CGG | 0.597427 | 5:-9507162 | MsG0580024772.01.T01:CDS |
| AGCTGCCTAGAATCCAGGTG+AGG | 0.614847 | 5:-9505659 | MsG0580024772.01.T01:CDS |
| TAGGATCCGGAAGACAGTGA+TGG | 0.617671 | 5:-9506866 | MsG0580024772.01.T01:CDS |
| ATACACCGTTAAAGAAACTC+AGG | 0.619813 | 5:-9506334 | MsG0580024772.01.T01:intron |
| GCTGCCTAGAATCCAGGTGA+GGG | 0.628324 | 5:-9505658 | MsG0580024772.01.T01:CDS |
| GTTCTTCCCGTTGAATGACA+AGG | 0.631293 | 5:-9507067 | MsG0580024772.01.T01:CDS |
| GAAGACATAAATCTGGTCAG+AGG | 0.641158 | 5:+9506711 | None:intergenic |
| AGAGTTCAGGGAGAAATATG+GGG | 0.649147 | 5:-9506785 | MsG0580024772.01.T01:CDS |
| CCAGCCTTACTAAAGCGGCA+CGG | 0.649264 | 5:-9506966 | MsG0580024772.01.T01:CDS |
| GAACACATAAATCTGGTCAG+AGG | 0.650182 | 5:+9507086 | None:intergenic |
| CGTGACAGGAATTACCTCGT+AGG | 0.675089 | 5:-9506835 | MsG0580024772.01.T01:CDS |
| GATTTATGTCTTCTTCCCGG+AGG | 0.681678 | 5:-9506701 | MsG0580024772.01.T01:CDS |
| AGAAGACCTTGTCATCAACA+AGG | 0.684606 | 5:-9506749 | MsG0580024772.01.T01:CDS |
| TAACCTCAAAATCTCCTACG+AGG | 0.757108 | 5:+9506821 | None:intergenic |
| TAACCTCGAAATCTTCTACG+AGG | 0.763929 | 5:+9507190 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCACTATATCTAATATTTA+TGG | - | Chr5:9507132-9507151 | MsG0580024772.01.T01:CDS | 15.0% |
| !! | AAAAACTTCCAAATGAAATT+TGG | + | Chr5:9505903-9505922 | None:intergenic | 20.0% |
| !! | TATATAATAGTATTTCACCT+AGG | - | Chr5:9506577-9506596 | MsG0580024772.01.T01:CDS | 20.0% |
| !! | TTTATTTGCATGAAATACAA+TGG | + | Chr5:9506887-9506906 | None:intergenic | 20.0% |
| !!! | GATCAATCAATCAAATTTTA+TGG | - | Chr5:9506318-9506337 | MsG0580024772.01.T01:intron | 20.0% |
| !!! | TATAACTTTACTTTAGAATC+AGG | + | Chr5:9506695-9506714 | None:intergenic | 20.0% |
| ! | AGATAATATGCAAACAAGAA+CGG | + | Chr5:9507060-9507079 | None:intergenic | 25.0% |
| ! | ATGAAATAATGAAGCTGTAT+AGG | - | Chr5:9505570-9505589 | MsG0580024772.01.T01:CDS | 25.0% |
| ! | GTCAGTTATAAAAAACATTG+TGG | - | Chr5:9506512-9506531 | MsG0580024772.01.T01:intron | 25.0% |
| ! | TCCAAATCTAAATTAGAATC+AGG | + | Chr5:9506829-9506848 | None:intergenic | 25.0% |
| ! | TCCTGATTCTAATTTAGATT+TGG | - | Chr5:9506825-9506844 | MsG0580024772.01.T01:CDS | 25.0% |
| !! | AATTTTATGGTGGTTGTTAA+TGG | - | Chr5:9506331-9506350 | MsG0580024772.01.T01:intron | 25.0% |
| !! | ATTTCATTTGGAAGTTTTTC+AGG | - | Chr5:9505904-9505923 | MsG0580024772.01.T01:intron | 25.0% |
| !! | CAATCAATCAAATTTTATGG+TGG | - | Chr5:9506321-9506340 | MsG0580024772.01.T01:intron | 25.0% |
| !! | GCTTTTGAATCTATTTACAT+TGG | - | Chr5:9506981-9507000 | MsG0580024772.01.T01:CDS | 25.0% |
| AAATAGATTCAAAAGCTCTC+AGG | + | Chr5:9506977-9506996 | None:intergenic | 30.0% | |
| AACTAGATTGTACATCATCA+TGG | + | Chr5:9506672-9506691 | None:intergenic | 30.0% | |
| AACTTCCAAATGAAATTTGG+AGG | + | Chr5:9505900-9505919 | None:intergenic | 30.0% | |
| ATGAAATATCGAAGCTGTAT+AGG | - | Chr5:9505939-9505958 | MsG0580024772.01.T01:intron | 30.0% | |
| CTGCTTTAATCTTTGTCTAA+TGG | - | Chr5:9507029-9507048 | MsG0580024772.01.T01:CDS | 30.0% | |
| ! | GGAAGTTTTTCATGTGTTTT+CGG | - | Chr5:9505913-9505932 | MsG0580024772.01.T01:intron | 30.0% |
| ! | TTTACATTGGATAGTTCTAC+TGG | - | Chr5:9506994-9507013 | MsG0580024772.01.T01:CDS | 30.0% |
| ! | TTTTAACCTTTCTTCTTTCC+TGG | - | Chr5:9506644-9506663 | MsG0580024772.01.T01:CDS | 30.0% |
| !! | CAGAAATTTTTCAAATGCCT+AGG | + | Chr5:9506597-9506616 | None:intergenic | 30.0% |
| AACACATAAATCTGGTCAGA+GGG | + | Chr5:9505740-9505759 | None:intergenic | 35.0% | |
| AAGACATAAATCTGGTCAGA+GGG | + | Chr5:9506115-9506134 | None:intergenic | 35.0% | |
| AAGAGTTCAGGGAGAAATAT+GGG | - | Chr5:9506038-9506057 | MsG0580024772.01.T01:intron | 35.0% | |
| AATCGCCTCCAAATTTCATT+TGG | - | Chr5:9505892-9505911 | MsG0580024772.01.T01:intron | 35.0% | |
| ACTGACCTGAGTTTCTTTAA+CGG | + | Chr5:9506498-9506517 | None:intergenic | 35.0% | |
| ATACACCGTTAAAGAAACTC+AGG | - | Chr5:9506490-9506509 | MsG0580024772.01.T01:intron | 35.0% | |
| ATGCCATAATATCTTGCAAC+AGG | + | Chr5:9507194-9507213 | None:intergenic | 35.0% | |
| ATTGAACCAGGAAAGAAGAA+AGG | + | Chr5:9506787-9506806 | None:intergenic | 35.0% | |
| GACAAGTTGTCAAGATAATC+CGG | - | Chr5:9507222-9507241 | MsG0580024772.01.T01:CDS | 35.0% | |
| GATCCTGTTGCAAGATATTA+TGG | - | Chr5:9507188-9507207 | MsG0580024772.01.T01:CDS | 35.0% | |
| GGTTAACATACAAGACTTCA+AGG | - | Chr5:9505652-9505671 | MsG0580024772.01.T01:CDS | 35.0% | |
| GTTTGCCTCCAAATTTCATT+TGG | - | Chr5:9506270-9506289 | MsG0580024772.01.T01:intron | 35.0% | |
| TAATGAAGCTGTATAGGATC+TGG | - | Chr5:9505576-9505595 | MsG0580024772.01.T01:CDS | 35.0% | |
| TGTTCCATGACATGTTAGTA+AGG | + | Chr5:9506240-9506259 | None:intergenic | 35.0% | |
| TTGTACATCATCATTGAACC+AGG | + | Chr5:9506799-9506818 | None:intergenic | 35.0% | |
| ! | AAATTGTACTGACACTGACA+TGG | - | Chr5:9507109-9507128 | MsG0580024772.01.T01:CDS | 35.0% |
| ! | AGTTTTTCATGTGTTTTCGG+AGG | - | Chr5:9505916-9505935 | MsG0580024772.01.T01:intron | 35.0% |
| !!! | TTTTGGCTTTCTTGATGACA+AGG | + | Chr5:9505709-9505728 | None:intergenic | 35.0% |
| AACGGTGTATCTCTCAAGTA+CGG | + | Chr5:9506480-9506499 | None:intergenic | 40.0% | |
| AAGGACTTACACCAAACGTA+TGG | - | Chr5:9505796-9505815 | MsG0580024772.01.T01:intron | 40.0% | |
| ACAGCCTTACTAACATGTCA+TGG | - | Chr5:9506233-9506252 | MsG0580024772.01.T01:intron | 40.0% | |
| ACATGTTAGTAAGGCTGTTC+TGG | + | Chr5:9506231-9506250 | None:intergenic | 40.0% | |
| ACGGGAAGAACACATAAATC+TGG | + | Chr5:9505748-9505767 | None:intergenic | 40.0% | |
| AGAAGACCTTGTCATCAACA+AGG | - | Chr5:9506075-9506094 | MsG0580024772.01.T01:intron | 40.0% | |
| AGAGTTCAGGGAGAAATATG+GGG | - | Chr5:9506039-9506058 | MsG0580024772.01.T01:intron | 40.0% | |
| AGATATTATGGCATGAAGCG+TGG | - | Chr5:9507200-9507219 | MsG0580024772.01.T01:CDS | 40.0% | |
| ATGGAACCAGGAAAGAAGAA+AGG | + | Chr5:9506653-9506672 | None:intergenic | 40.0% | |
| ATGGTGGTTGTTAATGGTTG+AGG | - | Chr5:9506337-9506356 | MsG0580024772.01.T01:CDS | 40.0% | |
| ATTCTCGGAGTTCATACGTT+TGG | + | Chr5:9506185-9506204 | None:intergenic | 40.0% | |
| CAAGACTTCAAGGAGAAGTA+CGG | - | Chr5:9505662-9505681 | MsG0580024772.01.T01:intron | 40.0% | |
| CAAGAGTTCAGGGAGAAATA+TGG | - | Chr5:9506037-9506056 | MsG0580024772.01.T01:intron | 40.0% | |
| CCAGATTTATGTCTTCTTCC+CGG | - | Chr5:9506120-9506139 | MsG0580024772.01.T01:intron | 40.0% | |
| GAACACATAAATCTGGTCAG+AGG | + | Chr5:9505741-9505760 | None:intergenic | 40.0% | |
| GAAGACATAAATCTGGTCAG+AGG | + | Chr5:9506116-9506135 | None:intergenic | 40.0% | |
| TAACCTCAAAATCTCCTACG+AGG | + | Chr5:9506006-9506025 | None:intergenic | 40.0% | |
| TAACCTCGAAATCTTCTACG+AGG | + | Chr5:9505637-9505656 | None:intergenic | 40.0% | |
| TATCGAAGCTGTATAGGATC+CGG | - | Chr5:9505945-9505964 | MsG0580024772.01.T01:intron | 40.0% | |
| TTACCTCGTAGAAGATTTCG+AGG | - | Chr5:9505631-9505650 | MsG0580024772.01.T01:CDS | 40.0% | |
| TTGTACATCATCATGGAACC+AGG | + | Chr5:9506665-9506684 | None:intergenic | 40.0% | |
| ! | TTACCTCGTAGGAGATTTTG+AGG | - | Chr5:9506000-9506019 | MsG0580024772.01.T01:intron | 40.0% |
| !! | ACGTTTGGTGTAAGTCCTTA+AGG | + | Chr5:9505795-9505814 | None:intergenic | 40.0% |
| !!! | GTCAGAGGGATTGTCTTTTT+TGG | + | Chr5:9505726-9505745 | None:intergenic | 40.0% |
| !!! | TTTTGGCCTTGTTGATGACA+AGG | + | Chr5:9506084-9506103 | None:intergenic | 40.0% |
| ACATGTCCAAGCAAGAGTTC+AGG | - | Chr5:9506026-9506045 | MsG0580024772.01.T01:intron | 45.0% | |
| ACGCCAACCTTGTCATTCAA+CGG | + | Chr5:9505767-9505786 | None:intergenic | 45.0% | |
| ATTCTCGGAGTCCATACGTT+TGG | + | Chr5:9505810-9505829 | None:intergenic | 45.0% | |
| CATGTCCAAGCAAGAGTTCA+GGG | - | Chr5:9506027-9506046 | MsG0580024772.01.T01:intron | 45.0% | |
| CCGGGAAGAAGACATAAATC+TGG | + | Chr5:9506123-9506142 | None:intergenic | 45.0% | |
| GATTTATGTCTTCTTCCCGG+AGG | - | Chr5:9506123-9506142 | MsG0580024772.01.T01:intron | 45.0% | |
| GCACACACACACACTAACAA+CGG | + | Chr5:9506366-9506385 | None:intergenic | 45.0% | |
| GCTGTATAGGATCTGGAAGA+AGG | - | Chr5:9505583-9505602 | MsG0580024772.01.T01:CDS | 45.0% | |
| GTTCTTCCCGTTGAATGACA+AGG | - | Chr5:9505757-9505776 | MsG0580024772.01.T01:intron | 45.0% | |
| TAGGATCTGGAAGAAGGTGA+TGG | - | Chr5:9505589-9505608 | MsG0580024772.01.T01:CDS | 45.0% | |
| TATCTTCCTGCAGTCTCACT+TGG | + | Chr5:9507248-9507267 | None:intergenic | 45.0% | |
| TGGTGTAAGTCCTGAAAGTC+TGG | + | Chr5:9506165-9506184 | None:intergenic | 45.0% | |
| TGGTGTAAGTCCTTAAGGTG+TGG | + | Chr5:9505790-9505809 | None:intergenic | 45.0% | |
| TTCCCGTTGAATGACAAGGT+TGG | - | Chr5:9505761-9505780 | MsG0580024772.01.T01:intron | 45.0% | |
| TTTCTCCCTGAACTCTTGCT+TGG | + | Chr5:9506035-9506054 | None:intergenic | 45.0% | |
| ! | GATGGCTCTGTAGACATTCT+CGG | + | Chr5:9505825-9505844 | None:intergenic | 45.0% |
| ATCTCAGCTGCCTAGAATCC+AGG | - | Chr5:9507160-9507179 | MsG0580024772.01.T01:CDS | 50.0% | |
| CAAGCTTGTGCCAGAACATC+AGG | - | Chr5:9506430-9506449 | MsG0580024772.01.T01:intron | 50.0% | |
| CCAGACCAGCCTTACTAAAG+CGG | - | Chr5:9505853-9505872 | MsG0580024772.01.T01:intron | 50.0% | |
| CGCCAACCTTGTCATTCAAC+GGG | + | Chr5:9505766-9505785 | None:intergenic | 50.0% | |
| CGTGACAGGAATTACCTCGT+AGG | - | Chr5:9505989-9506008 | MsG0580024772.01.T01:intron | 50.0% | |
| GCATCTCCATCACTGTCTTC+CGG | + | Chr5:9505967-9505986 | None:intergenic | 50.0% | |
| GCTGTTCTGGCAAACGATGA+TGG | + | Chr5:9506218-9506237 | None:intergenic | 50.0% | |
| TAGGATCCGGAAGACAGTGA+TGG | - | Chr5:9505958-9505977 | MsG0580024772.01.T01:intron | 50.0% | |
| TCAGGACAAGCGAACGACAA+AGG | + | Chr5:9506959-9506978 | None:intergenic | 50.0% | |
| TCAGTCAGCACCTGATGTTC+TGG | + | Chr5:9506443-9506462 | None:intergenic | 50.0% | |
| TGATGGAGATGCTTCGTGAC+AGG | - | Chr5:9505975-9505994 | MsG0580024772.01.T01:intron | 50.0% | |
| ACGCCAACCTTGTCATCCTC+CGG | + | Chr5:9506142-9506161 | None:intergenic | 55.0% | |
| AGCTGCCTAGAATCCAGGTG+AGG | - | Chr5:9507165-9507184 | MsG0580024772.01.T01:CDS | 55.0% | |
| AGGTTGGCGTCCACACCTTA+AGG | - | Chr5:9505777-9505796 | MsG0580024772.01.T01:intron | 55.0% | |
| AGGTTGGCGTCCAGACTTTC+AGG | - | Chr5:9506152-9506171 | MsG0580024772.01.T01:intron | 55.0% | |
| CAGCCTTACTAAAGCGGCAC+GGG | - | Chr5:9505859-9505878 | MsG0580024772.01.T01:intron | 55.0% | |
| CCAGCCTTACTAAAGCGGCA+CGG | - | Chr5:9505858-9505877 | MsG0580024772.01.T01:intron | 55.0% | |
| CTTCTTCCCGGAGGATGACA+AGG | - | Chr5:9506132-9506151 | MsG0580024772.01.T01:intron | 55.0% | |
| CTTGCAGGAGGCTGAATTGC+TGG | - | Chr5:9506391-9506410 | MsG0580024772.01.T01:CDS | 55.0% | |
| GCTGCCTAGAATCCAGGTGA+GGG | - | Chr5:9507166-9507185 | MsG0580024772.01.T01:CDS | 55.0% | |
| GGATCCCTCACCTGGATTCT+AGG | + | Chr5:9507173-9507192 | None:intergenic | 55.0% | |
| TGATGGAGATGCTTCGCGAC+AGG | - | Chr5:9505606-9505625 | MsG0580024772.01.T01:CDS | 55.0% | |
| TTCCCGGAGGATGACAAGGT+TGG | - | Chr5:9506136-9506155 | MsG0580024772.01.T01:intron | 55.0% | |
| TTCCTGCAGTCTCACTTGGC+CGG | + | Chr5:9507244-9507263 | None:intergenic | 55.0% | |
| TTGCAACAGGATCCCTCACC+TGG | + | Chr5:9507181-9507200 | None:intergenic | 55.0% | |
| ! | CCGCTTTAGTAAGGCTGGTC+TGG | + | Chr5:9505856-9505875 | None:intergenic | 55.0% |
| ! | GCTGGTCTGGCAAACGATGA+TGG | + | Chr5:9505843-9505862 | None:intergenic | 55.0% |
| !! | AGTCCCGTGCCGCTTTAGTA+AGG | + | Chr5:9505865-9505884 | None:intergenic | 55.0% |
| ATCCGGCCAAGTGAGACTGC+AGG | - | Chr5:9507239-9507258 | MsG0580024772.01.T01:CDS | 60.0% | |
| CGCCAACCTTGTCATCCTCC+GGG | + | Chr5:9506141-9506160 | None:intergenic | 60.0% | |
| !! | CCGTGCCGCTTTAGTAAGGC+TGG | + | Chr5:9505861-9505880 | None:intergenic | 60.0% |
| GTGTGTGTGCGCGCGCTTGC+AGG | - | Chr5:9506376-9506395 | MsG0580024772.01.T01:CDS | 70.0% | |
| TGTGTGCGCGCGCTTGCAGG+AGG | - | Chr5:9506379-9506398 | MsG0580024772.01.T01:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 9505554 | 9507292 | 9505554 | ID=MsG0580024772.01;Name=MsG0580024772.01 |
| Chr5 | mRNA | 9505554 | 9507292 | 9505554 | ID=MsG0580024772.01.T01;Parent=MsG0580024772.01;Name=MsG0580024772.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|1|1|3|0|329 |
| Chr5 | exon | 9506543 | 9507292 | 9506543 | ID=MsG0580024772.01.T01:exon:26487;Parent=MsG0580024772.01.T01 |
| Chr5 | exon | 9506335 | 9506448 | 9506335 | ID=MsG0580024772.01.T01:exon:26486;Parent=MsG0580024772.01.T01 |
| Chr5 | exon | 9505554 | 9505679 | 9505554 | ID=MsG0580024772.01.T01:exon:26485;Parent=MsG0580024772.01.T01 |
| Chr5 | CDS | 9506543 | 9507292 | 9506543 | ID=MsG0580024772.01.T01:cds;Parent=MsG0580024772.01.T01 |
| Chr5 | CDS | 9506335 | 9506448 | 9506335 | ID=MsG0580024772.01.T01:cds;Parent=MsG0580024772.01.T01 |
| Chr5 | CDS | 9505554 | 9505679 | 9505554 | ID=MsG0580024772.01.T01:cds;Parent=MsG0580024772.01.T01 |
| Gene Sequence |
| Protein sequence |
